LOCUS       DATLQL010000001         1068 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_888864, whole genome shotgun sequence.
ACCESSION   DATLQL010000001 DATLQL010000000
VERSION     DATLQL010000001.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1068)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1068)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1068
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_888864"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(277..>1068)
                     /locus_tag="VNB68_00005"
     CDS             complement(277..>1068)
                     /locus_tag="VNB68_00005"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HVD35761.1"
                     /translation="GSIFIHLDWHVVHYVKVIMDEIFKLENFRNEIIIKRGRRKNLLY
                     QFKSIDRMHNSNDSILWYSRSPNTRYPHPLIEYASESKWMGFWSNVNRPTMRYEIFGY
                     VPERGQWKWSRDRALRAIRNFSVYRQKFNSISLDNYWKHTGKKLEFIRKRDGVKYPEY
                     WIPAKTHKILDNIWTDIEAYDYSTGYGTEKHKALLERIIGKFSKPGDLIADFFCGSGT
                     TLAVASTLRRQWIGCDSSSLAMKVTRKRLTGCDFRLLMTKCSSKR"
BASE COUNT          289 a          213 c          192 g          374 t
ORIGIN      
        1 ttagcgcctt tggaaattcc ataaaatttc taaatatagt gcgttgtcct tgccaattaa
       61 tttgaggaga gggaatttcc agtctagagg cctctttcct agaagtattg cccaaccgac
      121 cttgtaaacg cttcagtaag ctttcatagt ctgacttcgt ttgttggctc acggtcttgt
      181 attgtcagac ctctttaatg tacgttatga tccatggatg atggtttcat caagggaatg
      241 ttttgtgatt tacaaggcgg atggtaagtt aggcatctac cgttttgagg aacattttgt
      301 cattagcaat ctgaaatcgc aacctgtaag tctttttctt gtcactttca tagccaatga
      361 ggatgaatcg caacctatcc attgccttcg caatgtgctg gcaactgcta gtgtggtacc
      421 cgaaccgcaa aagaaatcag caatcagatc tccgggctta gaaaattttc cgattatcct
      481 ttcaagcagt gctttgtgtt tttctgtacc ataacctgtt gaatagtcat atgcttctat
      541 atctgtccaa atgttatcga gtattttatg agtcttagcg ggaatccaat attctggata
      601 tttcactccg tcacgctttc gaataaattc cagttttttc cctgtgtgct tccagtagtt
      661 gtctaaagaa atagaattaa atttctgtcg atatacacta aaatttctaa ttgctcttaa
      721 cgctctatcc ctagaccatt tccattgtcc cctttcaggt acatacccga atatttcgta
      781 cctcattgta ggcctattga cattgctcca aaaccccatc cattttgatt cagatgcata
      841 ttcgataagg ggatgtggat atcttgtgtt aggggacctg gaataccata gtatcgaatc
      901 atttgaattg tgcattctat cgatagactt gaattggtaa agtagatttt tccttcgtcc
      961 tcttttaatt ataatttcgt tacgaaagtt ttcaagtttg aaaatttcat ccataattac
     1021 ttttacataa tggacaacat gccaatctag atgaataaaa attgaacc
//
LOCUS       DATLQL010000002         1402 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2487527, whole genome shotgun sequence.
ACCESSION   DATLQL010000002 DATLQL010000000
VERSION     DATLQL010000002.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1402)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1402)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1402
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2487527"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            292..807
                     /locus_tag="VNB68_00010"
     CDS             292..807
                     /locus_tag="VNB68_00010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HVD35762.1"
                     /translation="MKILIAEDERDVALLYKNALERRNHQVILAENGKMCLDIYHKEF
                     EHMLSESPISSIPFDATILDHKMPKINGMDVAKEILAINPRQRIIFASAFVKETLATS
                     IRELKQVVELLQKPFGINLLIDTLEDRNIYKELKKLNVDLEIIRAVNPTHEQISDLLT
                     RLQRIQRGRGS"
     gene            complement(931..1317)
                     /locus_tag="VNB68_00015"
     CDS             complement(931..1317)
                     /locus_tag="VNB68_00015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8e"
                     /protein_id="HVD35763.1"
                     /translation="MRKSIENLFGRKYTGGRKVPLRGRRKYEIDRYPNEAVVGTTEMV
                     SRRTRGNNFKFALKSAEFANVSDTLSKTTKRLKIIRVIKNPANKDYERRGVISKGALF
                     ETEEGIAKVVSRPGQNGSVNAVLVRR"
BASE COUNT          422 a          275 c          254 g          451 t
ORIGIN      
        1 tagactacat gtcgttgaaa atctctagct cataattgag gtatcactat gtcggttgta
       61 aaacagactg acttacctgg taaaaccaga atcgtatgtg gcccaatagc tacaccgcta
      121 tcttttatga tcacatattc ttgattagtt agttaatcaa tttatgcata ttgtcctcat
      181 atagtacttt taacgagttt agtagagcta ataagtatga atatgaatcg gaaggcaaat
      241 aagaccagct tggtgagatc tctgaatttt ggctatgtcg aataaacact catgaaaata
      301 ctcattgctg aagacgaaag agacgttgcg ctgctttata aaaacgcact tgagagaaga
      361 aatcaccagg ttatattggc tgaaaatggt aaaatgtgcc ttgatattta ccataaagaa
      421 tttgaacaca tgctatctga aagtccaata tcctctatac cctttgacgc aactatattg
      481 gatcataaaa tgccgaagat taacggaatg gatgttgcaa aggaaatcct tgctataaat
      541 cctcgccagc gaatcatatt tgcatcggct tttgttaaag agacactggc aacctcgata
      601 agagaactta agcaggtagt agaactactg cagaaacctt ttggcatcaa tctgttgata
      661 gatactttag aggatagaaa catctacaaa gaactgaaaa aactaaatgt agatttagaa
      721 ataattcgag ctgtgaatcc cacacatgaa cagatatctg atttgttaac tagattgcaa
      781 agaattcaaa gggggagggg cagttgaacc ttattcttat ccttctagtc aatttttacc
      841 tttagatgcc aagtgaactt tgtcaatttg gctaaactat cagattccaa gtctaacaaa
      901 agataacttt tagaacgtcg gccagattga ctaacgtctt acgaggacag cattaacgct
      961 tccattttgc ccgggtctgg aaactacctt tgcaatgcct tcttccgtct caaataaggc
     1021 tcccttgctt atcactcctc ttctctcgta atccttattt gcaggattct ttatcacccg
     1081 aataatcttt aatctctttg tcgttttaga gagagtatca gagacatttg caaattctgc
     1141 gctcttaaga gcaaatttaa aattattacc tcgtgtgcgt cggctgacca tctccgttgt
     1201 tccaacaact gcttcattag gatatctgtc gatttcatat ttcctcctgc ctcggagtgg
     1261 taccttgcgg cctcctgtgt attttcgtcc gaagaggttc tctatagact tacgcattag
     1321 acaccattgt tgatcctcta tgctaattaa tcttttactg atcttttatt gtctgttatt
     1381 tttgttgtct tgtgaaatca tg
//
LOCUS       DATLQL010000003         1255 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_179318, whole genome shotgun sequence.
ACCESSION   DATLQL010000003 DATLQL010000000
VERSION     DATLQL010000003.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1255)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1255)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1255
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_179318"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(70..411)
                     /locus_tag="VNB68_00020"
     CDS             complement(70..411)
                     /locus_tag="VNB68_00020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35764.1"
                     /translation="MGNETVDNRLTDFLNEGKDWERKQTNVPGVILLKLPAFRSRPAC
                     IAIEIDALSRGGGGGNRRRGLIIRSKEEIEQLSNILTNDKVNELASAVEKVNPVQTNT
                     SSTMDSEVFEI"
     gene            891..>1255
                     /locus_tag="VNB68_00025"
     CDS             891..>1255
                     /locus_tag="VNB68_00025"
                     /inference="COORDINATES: protein motif:HMM:NF012241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HVD35765.1"
                     /translation="MGPDGKPRIREFGNARPASKGLMQQSNVLQPLIDTNFDAKENAL
                     TITAEMPGITKQDVKVGVEEGRVTIHAEKGDKKYHAELPVDGELNADTAKATYTNGIL
                     ELKIKIREPPKQKAKEIRV"
BASE COUNT          430 a          241 c          237 g          347 t
ORIGIN      
        1 gtttcacaat aaagtgtcga taccatctga gccctctatt ttctcaatac tgataagcga
       61 cattaactgt cagatctcaa atacctcaga gtccatagtc gacgaagtat ttgtttgaac
      121 aggatttact ttttctacag cagatgccaa ttcgttaact ttatcattag taagaatatt
      181 tgataattgc tctatctctt ctttggatct gataattaat cctcttcttc tattacctcc
      241 ccctcctcct cgactcaaag catcaatttc tatcgcaata caggcgggtc tacttctaaa
      301 agcaggtaac ttcaatagga taacgcctgg tacgttcgtc tgttttctct cccagtcctt
      361 accctcattc aaaaaatctg ttaacctatt atcaaccgtt tcatttccca tatccatatt
      421 ggtacattaa acaaaataaa ttgtaagata ccatcacgta cttttagtac cgcgtaaaac
      481 atcagtccaa aattttctaa tagctttgac ttgctttgtt gagaaagctg gtaggggcta
      541 tgtggattat cgcaagtgta acccctgacc agctatgaaa gatgacttgt ataattttat
      601 gaaagagaaa tttaatttat atctttctga atccacaaat ctattgcaat tggtaacgat
      661 agcaagagag tgtttaagaa aaaaatatat attgtcatat ccattaattt acgttaggtg
      721 atatatcaat gtggagagat ccatgggggt ataacaacag aatttttgaa cagatagaca
      781 aagaatttta agacgcagaa gacatgctga acaggatgtt cagaacagta agagaatcag
      841 gcgctggcat accagagaca tttccctact attactggta acagataacg atgggaccag
      901 atggaaagcc tcgcattaga gaatttggaa atgcaagacc ggcgtccaag ggcctgatgc
      961 agcagagcaa tgttctccaa ccgctcatag atacaaactt tgacgcaaag gaaaatgctc
     1021 taaccatcac agccgagatg cctggaataa ctaaacaaga tgtaaaggtt ggagtagaag
     1081 aaggacgagt aacgattcat gcagaaaagg gggacaaaaa atatcatgcg gaactgccag
     1141 ttgatggtga attgaatgct gatactgcaa aggcgaccta tacaaatgga atactggaac
     1201 taaaaataaa gatcagagaa cctccaaagc aaaaagcaaa ggaaataaga gtgga
//
LOCUS       DATLQL010000004         1318 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_357204, whole genome shotgun sequence.
ACCESSION   DATLQL010000004 DATLQL010000000
VERSION     DATLQL010000004.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1318)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1318)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1318
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_357204"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(36..245)
                     /gene="rpmC"
                     /locus_tag="VNB68_00030"
     CDS             complement(36..245)
                     /gene="rpmC"
                     /locus_tag="VNB68_00030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HVD35766.1"
                     /translation="MARLKLKTLHEMNDSDLTDKLSDLKADLAKLRSEGAKGTLKKRT
                     GDIRWVRRDIARIMTLLNERKENAK"
     gene            complement(238..978)
                     /locus_tag="VNB68_00035"
     CDS             complement(238..978)
                     /locus_tag="VNB68_00035"
                     /inference="COORDINATES: protein motif:HMM:NF003219.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HVD35767.1"
                     /translation="MSAVKNVMKNNYRNMELNEYLAASLKDAGYGGVDVQKTPIGTRI
                     TLYVTRPGLVIGRKGSGIKDLTSRLEHNFGLTNPQISVLEVPVPELNPKIMSNRIGQL
                     IERGTAFRRASLWTINTIMNAGALGVEVSVAGKLRSERSHFEKHSAGIVPKSGDIAER
                     VVKVGVTHVLTKMGLMGIQLRIALKDEVPPEFELSNMSTNTKQQGVDSQEPITDDSAL
                     PKHTTNAPTTISSAQEHGAIVNGGNTNG"
     gene            complement(975..>1318)
                     /gene="rplV"
                     /locus_tag="VNB68_00040"
     CDS             complement(975..>1318)
                     /gene="rplV"
                     /locus_tag="VNB68_00040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HVD35768.1"
                     /translation="KARDFLNNVIAKKIAVPYRRYNNEVAHRSNVRDGFFAGRFPQKS
                     AKEFLKLLDNLETNAEYKGMDLDRLRIISAVVHKGTKLERFTPRAMGKASPKFDTLIH
                     IELVAQESRSE"
BASE COUNT          336 a          294 c          217 g          471 t
ORIGIN      
        1 aatcaattca ttggctacaa tgttatccgc actaatcatt ttgcattctc ctttctttca
       61 ttcagtagtg tcattattcg agcgatgtct ctacgtaccc accgaatatc tccagtccgc
      121 tttttgagag tgcccttagc accttcagat ctcagtttag caagatcagc ctttaggtca
      181 gataacttat ccgtcaagtc actatcattc atttcgtgga gtgtttttaa tttaagtcta
      241 gccattggta tttcccccgt tgactatagc tccatgttct tgtgctgaag aaattgtcgt
      301 tggagcatta gttgtatgtt ttggtagtgc cgagtcatca gtaataggct cttgagaatc
      361 tacgccttgt tgtttagtat ttgttgacat attagacagt tcaaattctg gtgggacttc
      421 atctttcaat gcaattctca gctgtattcc catcaatccc atttttgtta agacatgagt
      481 aactcctacc ttcaccaccc tctcagcaat atctccactt tttggaacta ttcctgcaga
      541 gtgtttttca aaatgagatc gctcgctcct tagtttacct gccacagata cctctactcc
      601 caaggcgcct gcattcataa tggtgttaat tgtccaaagc gaagctcgtc taaaagctgt
      661 acctctttca attagttgtc ctattctatt gctcattatt tttggattca gttcaggaac
      721 aggtacttct aaaacagaaa tctgaggatt tgtcaagcca aaattatgtt caagtctaga
      781 ggttagatct ttaatacccg aaccctttct accaatcact agtcctggtc ttgtaacata
      841 aagtgttatc ctggttccga taggagtctt ttgtacgtcg acaccgccat atcctgcatc
      901 ttttaaactt gccgcaagat actcgttaag ttccatattt cgataattat tcttcattac
      961 attttttaca gcgctcattc tgatctgctc tcctgtgcga ctaattcaat gtgaatcaga
     1021 gtgtcgaact ttggacttgc ttttcccatg gcacgaggtg taaatcgttc aagttttgtt
     1081 cctttatgaa caactgcgct aataatcctt aatcgatcca gatccatacc tttatactca
     1141 gcattcgttt ctaaattatc aagaagtttc aaaaattctt tagctgattt ttgagggaac
     1201 cttcctgcaa aaaaaccatc acgaacgttt gaacggtgtg cgacttcatt gttatacctt
     1261 ctataaggaa ctgcaatttt ttttgcaata acattgttca aaaaatctct tgcttttt
//
LOCUS       DATLQL010000005         1361 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1955287, whole genome shotgun sequence.
ACCESSION   DATLQL010000005 DATLQL010000000
VERSION     DATLQL010000005.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1361)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1361)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1361
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1955287"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1361
                     /locus_tag="VNB68_00045"
     CDS             <1..>1361
                     /locus_tag="VNB68_00045"
                     /inference="COORDINATES: protein motif:HMM:NF012544.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HVD35769.1"
                     /translation="LFTAMGYAELGSAMQEAGGGYLWVREGLPRPNAFISGWMAWFAH
                     IVAGSLYAVGYGSFQFSLFKMTGLIGDEPLFGIIPFDKLFAVVAIVAFVYINVRGASE
                     TGKVGIIVTLIQLGTIFALISAGVISMQGDSSWYSNIINNYAPLGIGGIVAAMGLTFI
                     AFEGYEIIVQTGEEVKNPKRNIPRAIFISLILVVVLYCLVAFVSIGAFTSVDTNGQPA
                     WKYIGTYGDLGIMKAAESFLPFGPLIILSGGIVSSLAALNATTYSSARVAFAMGRHYN
                     LPHQLSQIHPKFKTPFIATITSGVIMIVMACSLPLTDIALAAGVIFLLLFTQVNISVI
                     TIRRIYGDKLDYGFKTPFFPIIPIIAIFLKIGLAIYLLFIQPISWGISVLWILIGFGI
                     YRLYTFKKEIEHYAPIITSEGDITRKDFRILVPYTPENPDRLTKYAIRIAKDNDGEIN
                     ILR"
BASE COUNT          391 a          255 c          291 g          424 t
ORIGIN      
        1 actttttacg gcaatgggtt atgctgagct aggatcagcc atgcaagaag caggcggggg
       61 ctatctttgg gttagagaag gattacccag acccaatgcc tttataagcg gatggatggc
      121 ctggtttgct catatcgtcg caggtagcct ttacgccgtg ggctatggct catttcaatt
      181 cagtttattc aagatgaccg gattaattgg agacgagcct ttattcggta ttattccctt
      241 tgataagcta tttgccgtcg ttgctattgt agcgtttgta tatatcaatg ttcgaggggc
      301 atctgagaca ggtaaggtcg gaataatagt caccctaatt caattgggaa caattttcgc
      361 attaatatct gctggtgtta tttctatgca aggtgattcc agttggtatt cgaatataat
      421 aaacaattat gctcctttgg gaataggggg aatagttgct gctatgggat tgacatttat
      481 tgcctttgaa ggatatgaaa taatcgtcca gactggggag gaggtaaaga atccaaagag
      541 gaatatacct agagcaattt tcatctccct tattcttgta gtagtgttat attgcctagt
      601 agcgttcgtg tctataggag cgttcacttc tgtagacacg aacggacaac cagcttggaa
      661 atacataggc acgtatggtg atttaggcat aatgaaagct gctgaatcct tcttaccgtt
      721 tggacctctc ataatcctca gtggtggtat cgtctctagc ttggcagctt tgaatgcaac
      781 tacatattcc tcagcaaggg tagcatttgc tatgggtaga cattacaatt taccacacca
      841 attgagtcaa attcatccta aattcaaaac accgttcatc gccacaataa catccggagt
      901 aataatgata gtcatggcgt gtagcttgcc acttactgat atagctctag ctgctggtgt
      961 tatatttttg ctcctgttca cacaagtaaa catatctgtc atcactataa ggagaattta
     1021 tggagataag cttgattatg gattcaagac gcccttcttt ccaatcattc caatcatcgc
     1081 gatattttta aagatagggc ttgcaattta cctattattt atccagccaa tcagttgggg
     1141 tattagcgta ctctggattt tgataggctt tggaatatat cgactttata ctttcaaaaa
     1201 agaaattgaa cattacgcac caatcattac cagtgaaggt gatattacaa ggaaagactt
     1261 tagaatttta gttccatata ctccagaaaa tcccgaccga ctgacaaagt acgctatacg
     1321 cattgcaaaa gataatgatg gagaaattaa tatccttagg g
//
LOCUS       DATLQL010000006         2296 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_535682, whole genome shotgun sequence.
ACCESSION   DATLQL010000006 DATLQL010000000
VERSION     DATLQL010000006.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2296)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2296)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2296
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_535682"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            751..1845
                     /locus_tag="VNB68_00050"
     CDS             751..1845
                     /locus_tag="VNB68_00050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35770.1"
                     /translation="MKNVFPYMKEMKKNIEPHLLFLILIVAFLPPINPLMSFDELIMA
                     DDVYNPEVNDMTSTPFTTVQNWPFVNNVKRIMGAYIPDTLHLEEMEGTDQTLTILEFL
                     QQGFDEYYFVMDNFWDAGEIESTERLLNAADNTGLKIVIILLPPSEGGSMSSYDWKGW
                     INYFNDLKSRHPSSFSGFAIDDFNWISTRNDTKFRRNIDFMIDSNLTDALVSKRSDVK
                     FCPVVYFEGLGNQVVADEYAKYIDTLVWVSASYYNVSRLETNLSMFKEMFPGKPTRYI
                     VYPTITYNYSRQGYDPPSDRLVMATLSIATRSVDGIILWHKIDGHLARDYLNYRENPD
                     YLHAISVMEQLQIADERNTLVQPVDKQKNN"
     gene            complement(2021..>2296)
                     /locus_tag="VNB68_00055"
     CDS             complement(2021..>2296)
                     /locus_tag="VNB68_00055"
                     /inference="COORDINATES: protein motif:HMM:NF016908.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FkbM family methyltransferase"
                     /protein_id="HVD35771.1"
                     /translation="EVNADTLDNLLHRVGIDKVNWIKIDVEGAELEALKGAEGLLSRS
                     TDIALLVEVHSPHLVKPIVELCGSYKFGVQFKKNYENGSSHILLKKN"
BASE COUNT          706 a          446 c          430 g          714 t
ORIGIN      
        1 ttcttataat aagagttatt actcgtcatt ccatgtcttc ataccataat ccaatgtcgc
       61 acatgtattg tcaaaagtgt gacagaagct atccgatgtc ttttaccaaa tgcacaatat
      121 gtgaaggaaa attagttgca aaagagtacg tcgaatagcc agtagtaacc tattctaatt
      181 gatagaaatt cgaatttggt cttttgggtc aaatttagaa ggaatctcat cataagagat
      241 tcttgaagga cttcgtctac aatctcggct aaaatcgttt aacgcactct tggcatctgt
      301 gtatgtccga ctcttgtccg atgggccacc tgagacccct atctcgacta gattttgggt
      361 ccatttgata tgccgagtgg agaccttgag gttatgattt ggatttttct tcttctggtt
      421 ttcagctttc agcaatacct gattagtgta cagttgactc cacgtttcgc aataagaaat
      481 atgctaatag agtgacggat taaatcagtc acttgacaaa gtttgagggg atatcactta
      541 ggaaacctca tagaaatctg tgcaaaactt taaaggctac tcgtgaggct gtttttcgac
      601 ctatgatttt actctcaagc aagctcgata tctattctat tgactgtaaa tgcaaggatt
      661 tgtcaccggt taggggaacc aaggcattga taaagctggt taaactcatt ctagaaccgg
      721 attattaaaa tttagaaagc tctgacagct atgaagaatg tatttcctta catgaaagaa
      781 atgaagaaga atattgagcc ccacttacta tttctcatac tcattgtagc ttttttacct
      841 ccaataaatc ctctaatgtc gtttgatgaa ctgattatgg cggatgacgt gtataatccg
      901 gaagtcaacg acatgactag tactcccttt actaccgtac agaattggcc atttgtaaac
      961 aatgtaaaaa gaatcatggg agcgtatatt ccagacacac ttcatttaga agaaatggag
     1021 ggaactgacc aaaccctcac catattggaa tttcttcaac agggatttga tgaatattat
     1081 tttgtaatgg ataatttctg ggatgctggg gaaatagaat caacggaaag gttgctcaac
     1141 gctgcagaca atacgggact gaaaatagtt attattcttt tacctccatc cgaaggcggt
     1201 tctatgagca gctatgactg gaaggggtgg ataaattatt tcaatgatct taaatctaga
     1261 catccttctt cattcagcgg tttcgccata gacgatttca attggatcag tacaagaaat
     1321 gacacaaagt ttcgtagaaa cattgacttt atgatagatt ccaatcttac tgacgccctg
     1381 gtaagcaaga gaagcgatgt aaaattttgt cctgtagtgt attttgaagg tttgggaaat
     1441 caagtggtag ccgatgaata tgccaaatat atagacaccc tagtttgggt aagtgcaagc
     1501 tattacaatg tttcaaggct tgaaacaaac ctatcgatgt ttaaggaaat gtttcctgga
     1561 aaacctactc gatacatagt ttatcccaca ataacataca attattcaag acaaggatat
     1621 gacccgccat ccgataggtt agtaatggcc acgctttcga tagcaacaag atccgttgat
     1681 ggaataatac tatggcataa gattgatggc catctagcca gagattatct taattataga
     1741 gaaaatccag actatttgca tgcaatttct gtaatggagc agctgcagat agcagatgag
     1801 agaaatacct tggtacagcc tgtcgacaag caaaaaaata attgaaccct atttttctag
     1861 agtccgactt acttttaacc gataatttat aaattctctg atcgcacccg atagggctcg
     1921 cctatagctt ctgagacaag atttatacga aaattcgtta tccacgtagt tactgtgttg
     1981 ctcacaatct tttctgaaca cctacttggc aacgaggttc ttaattcttc tttaacaaga
     2041 tgtggctact tccgttctca tagttctttt tgaattgtac tccaaactta tatgacccac
     2101 ataattctac tatgggctta accaaatgtg gactatgtac ttcaaccaga agtgctatat
     2161 ccgtacttct tgacagtaat ccttctgctc ccttcaaggc ttctaattct gcaccctcca
     2221 catcaatctt tatccaattt accttgtcta taccaacacg atgtaataaa ttgtctaagg
     2281 tatctgcgtt cacttc
//
LOCUS       DATLQL010000007         1141 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_535730, whole genome shotgun sequence.
ACCESSION   DATLQL010000007 DATLQL010000000
VERSION     DATLQL010000007.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1141)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1141)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1141
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_535730"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1010
                     /locus_tag="VNB68_00060"
     CDS             <1..1010
                     /locus_tag="VNB68_00060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cobalamin-binding protein"
                     /protein_id="HVD35772.1"
                     /translation="LSCPVSSGAKLSGEKRCRIASFLPSSTEILYEVGAGDQITGVTH
                     ECNYPDDAMSKPRVINSAFDPSNMTSREIDNAIVGLMKTGGDIYTVDEKALKEARPDL
                     IIAQGVCEVCAPFTKEIDHAKSVLGYDPDVLVLDPHDLDDILTSIIDVAKRVGRLDEG
                     TKVIESLLNRINDIKRRVGERRTKSNDFTNSKKRDDPNIVCIEWIDPFFSAGHWIPQM
                     VDIAGGYNGLSTRGQPSRRISLEQISEFNPDKIILMPCGFDVDRTLREAKLLDNLSIW
                     ASLEAVQRNEVYAVNANAYFSKPGPRIVTGLAILAKIINPVTFADVDLPPNSFTKVIN
                     S"
BASE COUNT          399 a          191 c          246 g          305 t
ORIGIN      
        1 ttcttagttg tcctgtgtca tcaggagcaa agttgagtgg agaaaaaagg tgtaggatag
       61 cttcattttt accaagttcc accgaaatac tatacgaggt gggcgcagga gatcaaataa
      121 caggagtaac acacgaatgt aactaccctg atgacgctat gagcaaaccg cgggttataa
      181 actctgcatt cgatccttcc aatatgacta gcagagaaat cgataatgca atagtgggat
      241 taatgaagac ggggggagat atatacactg tagatgaaaa agcattaaaa gaagcaagac
      301 cagatctcat tattgcccaa ggtgtttgtg aagtatgtgc accatttacc aaagagatag
      361 atcatgcaaa atctgtatta ggatatgatc cagatgtact agttcttgat cctcatgatc
      421 tggatgatat cttaacaagt ataatagatg tagcaaaaag agttggaaga ttggatgaag
      481 gtactaaagt aatagaatca ttgctgaata gaataaatga cataaagaga agagtaggag
      541 aaagaaggac caaaagcaat gattttacaa attccaaaaa aagagacgac ccaaatattg
      601 tttgcataga atggattgat cctttcttca gtgccggaca ttggattcca cagatggtag
      661 atatcgcagg gggttataat ggattaagca ctagaggaca accatcccgt cgtatctccc
      721 tagagcaaat tagcgaattt aatccggata aaataattct aatgccctgt gggtttgacg
      781 tagacagaac attaagagag gcaaagttac tagataatct ttctatatgg gcctccttag
      841 aagctgtaca aaggaatgaa gtttatgccg ttaatgcaaa tgcgtatttc agcaagccag
      901 gaccaagaat agttacagga ttagctatac ttgcgaagat aattaaccca gtaacttttg
      961 cagatgtcga tttgccccca aattcattca ccaaagtaat aaatagttag aagcgaagct
     1021 attgggattc aaagctatta gtactagtta caaatcttgt tgccagagct gcttgaatcc
     1081 aatggcaact ccaatgcaca atatcagcta tgtcattctt ttcagcattt gatgtttgta
     1141 g
//
LOCUS       DATLQL010000008         3222 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1955830, whole genome shotgun sequence.
ACCESSION   DATLQL010000008 DATLQL010000000
VERSION     DATLQL010000008.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3222)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3222)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3222
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1955830"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            119..1273
                     /locus_tag="VNB68_00065"
     CDS             119..1273
                     /locus_tag="VNB68_00065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitase X catalytic domain-containing protein"
                     /protein_id="HVD35773.1"
                     /translation="MHLSKQDEKALDGEFGSSLSVAYKILLAIGEATEAEKLVSIKWA
                     HISGVNYNTIGDAGLKFLREFSKDARVSVPTTLNPMGYDKHKKSIISDEFQDKQTSIV
                     KSYMKMGILPSFSCVPYEIFDMPRKGTRVSFAESSAAIMANSMYGLLTNKESALSALA
                     SAITGKAPYSELHNEDLRRPTAQVRVDTPLSNELDYGLLGYFAGNAISKSCVSLGCHG
                     KDLNIMKAKSLSAALGTAGSCGMFTQEETNSEKIGFGKKEKDTVRDELNTTDNGDLIA
                     LGSPQLGINELELISKSVVGKKFSKPCMIFCPRAIFNEAFKLGIAQQIENAGGNLICD
                     ACTCLTPLITSDEYDGIITNSIKGSYYFNKFNRIPVCLKDLKTILKEHLK"
     gene            1275..1688
                     /locus_tag="VNB68_00070"
     CDS             1275..1688
                     /locus_tag="VNB68_00070"
                     /inference="COORDINATES: protein motif:HMM:NF014091.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF126 domain-containing protein"
                     /protein_id="HVD35774.1"
                     /translation="MIEYVKCKKIVGGIGTGRIVYTKYPLNFLSSVDTHTGVVSDPSH
                     DLIGISLKNSILIFPYAIGSSVGAYSIFALKSNGVAPSGIICTIKVDSTTASGCAIAG
                     IPLAQTFKGDQLQGLSDNFEAILDANNGSLKINKV"
     gene            1986..2900
                     /locus_tag="VNB68_00075"
     CDS             1986..2900
                     /locus_tag="VNB68_00075"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: protein motif:HMM:NF014641.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004852 - uroporphyrinogen-III synthase
                     activity [Evidence IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HVD35775.1"
                     /translation="MSLANLTVAITSSRRATELAHLIKTFGGIPYIVPTIGIADAQPI
                     SNEVDFFINTVLRDKIDYFVFMTGPSVHYFFRIASNLGMKEELISVIRGSTVVSRSDK
                     PSHVLRSFGIYTDLFPHENTERGILKLLKGRDMKDKKIAIIWHGASSRRFKMELESEG
                     SNVLELSSYSYSLSLDESADTILKQMGYKYIKPKIETILKLIDDAAGGLIDVITFTSP
                     PSVLELMKIADIHNYRESLLSSLNQRVIVTSVGPSTTESLNRHGITVDVMPSVYKMGP
                     MVKALSDYVSLQGQQNPKLGKLMKDGKL"
     gene            3012..>3222
                     /locus_tag="VNB68_00080"
     CDS             3012..>3222
                     /locus_tag="VNB68_00080"
                     /inference="COORDINATES: protein motif:HMM:NF019876.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TFIIB-type zinc ribbon-containing protein"
                     /protein_id="HVD35776.1"
                     /translation="MTSFCPECGGELKFDISTKNFICRSCGLYASREKIDELRDKTHQ
                     NNNSDDRRKHDDYLDWWQSSKKDKQK"
BASE COUNT         1049 a          567 c          696 g          910 t
ORIGIN      
        1 gcttgatcta tgagtgctga acaggtaatg caaagtcaag gatatataca cgaaccagaa
       61 aaaaccgact ttggagatct ggcattgtaa taaataagtc cttctacaaa tatgtgtagt
      121 gcacctttct aaacaagatg agaaggcact tgatggagaa tttggatctt cgctttcagt
      181 tgcatataag atattgctgg caattggaga agccacggaa gctgaaaaat tagtgagcat
      241 aaaatgggct cacatttcag gagttaatta caatacaata ggggatgcgg ggcttaaatt
      301 tctgagggag tttagcaaag atgcgagagt ttcggtacca actacgctaa atccaatggg
      361 ctacgacaaa cataagaaat caataatttc ggacgagttt caagataagc aaacaagtat
      421 tgtgaaatcg tatatgaaga tgggaattct cccatcgttt tcctgcgtcc catatgagat
      481 cttcgatatg cccagaaaag gcacccgtgt gagctttgca gaaagcagcg ctgcgattat
      541 ggccaactct atgtacggat tactaacaaa taaggaaagt gccctcagtg cattagctag
      601 tgccattact ggaaaagcgc catactccga acttcataat gaggatctgc gacgaccaac
      661 agctcaggtt agagttgaca cgcctctctc aaatgaattg gattatggct tacttggtta
      721 cttcgcaggt aatgcgataa gcaaaagttg tgtatctctg ggctgtcatg ggaaagacct
      781 gaacataatg aaggctaaat ctttatctgc tgcacttgga actgccggct cttgtggaat
      841 gttcacccaa gaagaaacaa acagtgaaaa aattgggttt ggaaaaaagg aaaaggacac
      901 tgttagagat gagttgaaca cgacagataa cggggacctt attgcactcg ggagtcctca
      961 actaggcata aacgagttag aattaatatc aaagagtgta gttggaaaga aattctcaaa
     1021 accttgcatg atcttttgtc cccgtgccat ttttaacgaa gccttcaagt tgggcatagc
     1081 tcagcagatc gagaatgctg gaggaaattt aatttgtgat gcctgcacat gtctcactcc
     1141 tctaataacc agtgacgaat atgatggtat aatcacaaac agtataaagg gatcttatta
     1201 ctttaacaag tttaatcgta tcccagtgtg tctaaaagat ttgaaaacca ttctgaaaga
     1261 gcatctgaaa taatttgata gagtatgtca agtgtaaaaa aattgtcgga gggataggca
     1321 cgggaaggat cgtttacaca aagtacccac tcaatttttt gtcgtcagtt gatacgcata
     1381 ctggtgtggt atctgatcct tcacatgatt taataggaat ctctctgaag aatagtattt
     1441 tgatttttcc gtatgcaatt gggagtagtg ttggtgccta ttccatattt gctctgaaat
     1501 caaatggtgt tgcaccgtcg ggaattatat gtactattaa ggtggatagc actactgcat
     1561 caggatgtgc tatagcaggc ataccgttag cccaaacctt taaaggagat caactacagg
     1621 gactatcgga taactttgaa gcgatattag atgcaaacaa tggttcctta aagatcaata
     1681 aagtttaagt gattactgca ttaaccgaaa attggtgtgt ggcatttgac gggcgaacgg
     1741 actacccgat ctagttggtg gaatgaagag aaaagtccac acaccgactg ctgtggaatc
     1801 ataatcaaag ccaagtaaat gatattaaga cagaaaacta gaggttaatc taatagtatg
     1861 tttgctcata gtatcataat gcctaagcag ggtttatgtc tcattatttc gtatcttgat
     1921 caaaaacccc ctaatttcca taatttccat tttcaaacta tttgctttcc ggagaattca
     1981 gtaacgtgtc attggctaac ttaaccgtag caattaccag tagccgaaga gcaactgaac
     2041 ttgcacacct gataaagaca ttcggtggaa ttccttatat cgttcccaca ataggtattg
     2101 cggatgctca accaatttca aatgaagttg atttttttat taatactgta cttagagata
     2161 agattgacta tttcgtcttc atgactggtc caagtgtgca ttattttttt agaattgctt
     2221 caaatttggg aatgaaagaa gaacttatct cagttattcg tggctctact gtcgtctcaa
     2281 ggagcgataa gccatctcac gtactccgta gttttggaat ctataccgat ctttttccac
     2341 acgaaaatac tgaaagggga atactgaaat tgcttaaagg aagagatatg aaagacaaaa
     2401 aaattgctat catatggcat ggagccagta gcagaaggtt caaaatggaa ttagaatctg
     2461 agggatctaa tgttttggag ctatcgtcgt attcctactc gttatcgctt gatgaatcgg
     2521 cagataccat cttgaaacag atgggataca aatacatcaa gccgaaaatc gaaactattt
     2581 taaagctcat tgacgacgca gccggcggtc ttattgatgt aatcactttt acaagtccgc
     2641 cgtcggtatt agaactgatg aagattgcag atatccataa ttacagagaa tcgttgttgt
     2701 cttctttgaa tcaaagagta atagtcacct cagtaggccc atctactacc gaatcattaa
     2761 accggcatgg gataactgtt gatgtaatgc ctagcgtgta caagatgggt ccaatggtaa
     2821 aggctctttc tgattatgtc tcactgcaag gacagcaaaa tccaaagtta ggaaagctga
     2881 tgaaggatgg gaagctgtga tgtattatga gaatattctc gtaagtagac acataaaaat
     2941 taaggttgtt gaggctccta gactacaata tacgtattac tttttattag gaaatctgca
     3001 gaaatactat attgactagc ttctgtcctg aatgcggtgg agaactaaaa tttgatattt
     3061 cgacgaagaa ttttatttgt agaagttgtg gtctttatgc gtcaagggaa aaaattgatg
     3121 aactgaggga caagacacat caaaataata attctgatga tagaagaaag cacgacgact
     3181 accttgattg gtggcaatca tccaagaagg acaagcaaaa gc
//
LOCUS       DATLQL010000009         1049 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2311927, whole genome shotgun sequence.
ACCESSION   DATLQL010000009 DATLQL010000000
VERSION     DATLQL010000009.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1049)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1049)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1049
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2311927"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1049
                     /locus_tag="VNB68_00085"
     CDS             <1..>1049
                     /locus_tag="VNB68_00085"
                     /EC_number="5.6.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF013311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase"
                     /protein_id="HVD35777.1"
                     /translation="DVNGNRSKYPIFDVKWMPILEQRNVKGKKTATRAVQIIRTISLL
                     SQKATRFVHACDYDQEGEVIGYNILEYACKNKYQSSLRAKFSTLTDEEIRNSFDNLLK
                     PSKGLAEAGRSRHMIDFIYGVNLSRALTQSFKVSNDGKRYCNLSIGRVQGPALAFVVD
                     KEMEIRKHVPEPYWIIYGEFEKNGHIIKAHYYQQKINTLSQATSIVSACANEDGVVRG
                     IEHQKATLKAPTPFNLGDLQKEAFRVFKFSPSYTLTIAERLYIEALISYPRTASQKLP
                     KSINYKKIISALSKIAFPVDGDNESSEGSGTYTNLTMSLLLKEKLSPNEGSKTDPAHP
                     AIYPSGEDPKGKLEGV"
BASE COUNT          374 a          197 c          211 g          267 t
ORIGIN      
        1 gatgttaacg gaaaccgaag taagtatcct atatttgatg ttaaatggat gccaatttta
       61 gagcagagaa atgtaaaagg taaaaagaca gccacaagag cagtccagat catacgaacg
      121 atatccttgc tttcccaaaa agctacaagg tttgttcatg cttgtgatta tgatcaggaa
      181 ggcgaggtaa taggctataa cattctcgaa tatgcatgta agaacaaata tcaaagttca
      241 ctaagagcta aattttcaac tcttacagat gaggaaataa gaaattcatt tgataatctg
      301 ttaaagccaa gcaaaggatt agctgaagcc gggagatctc gccatatgat cgattttatt
      361 tatggagtta acctctctag agcactcaca caatccttta aggttagtaa cgacggtaaa
      421 agatattgta acctgtccat aggcagggtt cagggtccgg ctcttgcctt tgtagtggac
      481 aaagaaatgg agatcagaaa acatgtcccg gaaccatact ggattatata tggagaattt
      541 gaaaaaaatg gacatataat taaagcacac tactatcaac aaaaaataaa caccctatct
      601 caagccactt caatagttag tgcctgtgca aacgaagatg gtgtggttag aggaattgaa
      661 catcaaaagg ccacactcaa agctccaact ccttttaact taggtgatct acagaaggaa
      721 gcatttagag tattcaaatt ttctcccagt tacacactaa cgattgcaga gagattatac
      781 attgaggcac tgatttctta tccaaggaca gctagccaaa agctgcctaa atcaataaac
      841 tataaaaaaa ttatttcagc cctttcaaaa attgcgtttc ctgttgatgg tgataatgaa
      901 agtagcgaag gtagcggtac ctatactaac ctcactatga gcctgttatt aaaggagaaa
      961 ctttctccga acgaaggaag caagactgat ccagcacatc cagcgatcta cccatcaggg
     1021 gaggacccaa aaggtaaact ggagggcgt
//
LOCUS       DATLQL010000010         1010 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2384, whole genome shotgun sequence.
ACCESSION   DATLQL010000010 DATLQL010000000
VERSION     DATLQL010000010.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1010)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1010)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1010
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2384"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..955
                     /locus_tag="VNB68_00090"
     CDS             <1..955
                     /locus_tag="VNB68_00090"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HVD35778.1"
                     /translation="FLAAPTGASAILIIFLLLWNSSLGKEVKKRTRELQESNRLLGVI
                     NEQLRERDRMQNEFINIAAHEMRTPIQPILGLSDIILQRIMNIAKQLQRGEEEVVYEQ
                     LQDSSGVPTRSNSIFRSSLSLSVEKIIPMVEIISRNARRLEKLTNNLLDVTRMENNKS
                     IELNKEPFAIDSVIRDCIIDVGQRIEKKNLKFSYVPAEDSRRVIIKADRVRIAQVLTN
                     LLDNSINSSQGGIISVTTAIDPDTNSIIVSVKDAGSGINPNIIPRLFSKFATASDKGT
                     GLGLYISKNIIEAHGGRIWAENNPDGKGATFSFSLPLSSQD"
BASE COUNT          339 a          185 c          219 g          267 t
ORIGIN      
        1 atttttggca gcccctactg gggctagtgc aatcttgata atatttctat tactttggaa
       61 ctccagccta ggaaaggaag taaagaaaag gactagggag ttacaggaat caaataggct
      121 cctcggtgtt atcaatgaac agttaaggga gcgagatcgt atgcaaaatg aattcataaa
      181 tatagctgcg catgagatgc gaacgccaat acaaccaatt cttgggttat ctgatattat
      241 actgcaaaga ataatgaaca ttgccaaaca attgcaaagg ggagaggagg aggttgttta
      301 cgaacagcta caggattcct ctggcgttcc gactcgatct aattcaatct ttaggtcctc
      361 tttgtcacta tctgtagaga agattatccc aatggtagag atcataagta ggaatgcaag
      421 aaggctcgag aagctgacca ataatttgct tgacgttaca cgaatggaaa acaacaaatc
      481 tatagaacta aacaaggagc cattcgctat tgattccgtc atccgagatt gtataatcga
      541 tgtcggtcag cgtattgaaa agaaaaatct taaattttca tatgtgccag cagaggacag
      601 ccgacgggta ataatcaaag cagatagggt tagaattgca caggttttaa cgaatcttct
      661 ggataactcg ataaactcta gtcaaggggg aattatctct gtgactacag ctattgaccc
      721 tgacacaaat agtataattg taagcgtgaa agatgcaggg tctggaataa atcccaatat
      781 aattccaaga ttattttcaa agtttgcaac agcatcggac aaaggcactg gccttggatt
      841 gtacatttca aagaacatta ttgaagctca tggtggcagg atatgggccg aaaataatcc
      901 tgatggaaaa ggtgcaacgt tcagttttag tctaccactt tccagtcaag attaaaggaa
      961 ggaaacctta aagcttaaac ctctccctcc tctcagtaga aagctacttt
//
LOCUS       DATLQL010000011         1012 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_180997, whole genome shotgun sequence.
ACCESSION   DATLQL010000011 DATLQL010000000
VERSION     DATLQL010000011.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1012)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1012)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1012
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_180997"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..938
                     /locus_tag="VNB68_00095"
     CDS             <1..938
                     /locus_tag="VNB68_00095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35779.1"
                     /translation="LLILLLLFLGIFSSLSSYNSGIHAQMVERLKVTITYPDVKEEVP
                     VGNLTIYGTSSDDAIRSCHILILLNDDKPYQSALATGPEGKDDYSRWTFTFDPYSSLI
                     KQGENEIVSKIVCIQQGVANSNNLSASYNKINVTGSRGIYQQTDSSSSIGPAINQIRL
                     PEFGTPPNTPAYEAVTQDDIANTNVTTATSPDVDVTSISNIVPSTRTDNDNDIPHDKP
                     SISNDTLFDKTKSPPPNANITIQPDQRTVAIDTNTTLSMVSDLTREHFEALRDSVNGS
                     LEALYDNDLVAALQSLNEADSQLLKITNDLRSPVS"
BASE COUNT          330 a          202 c          180 g          300 t
ORIGIN      
        1 tattgttaat cctattgtta ttgttcttag gaatcttttc ttctctttct tcatataatt
       61 caggtattca tgctcagatg gttgaaaggc ttaaggtaac tatcacttat ccagatgtca
      121 aggaagaagt ccccgtgggt aacttgacta tttatgggac atcttcagac gatgctataa
      181 ggtcttgcca tatattaatt ctcttaaatg atgacaagcc ttatcaaagt gctttagcta
      241 cgggaccgga aggcaaggat gactattcta gatggacgtt tacgtttgac ccatattctt
      301 ctcttattaa gcagggggaa aatgaaattg tgtcaaaaat tgtctgtatt caacaaggtg
      361 ttgctaacag caataaccta tctgcttcct ataataaaat aaatgttaca ggaagcaggg
      421 gaatatatca acaaactgac agtagtagca gtattggtcc tgctataaat caaatacggc
      481 ttccagaatt tggaactcca ccaaacactc cagcttatga agcagtaaca caagatgata
      541 ttgcgaatac gaatgttact actgccactt ctcctgatgt cgatgttacc agtatatcca
      601 atattgttcc atctactcga acagacaatg ataatgatat tccccatgat aaaccttcaa
      661 tatctaatga tacccttttt gacaagacaa agagtcctcc tccgaatgct aatattacaa
      721 tacaacctga tcaaagaaca gtagcaattg ataccaacac aacgctatca atggtttcag
      781 acttaacacg agaacatttt gaggctttac gagacagtgt aaatgggtct ctggaggcac
      841 tatatgataa cgatttagta gcagctcttc aatccctgaa tgaagctgat agccaattat
      901 taaaaataac taatgatcta aggtccccgg tctcatagga accccgtaag aagctataat
      961 cccagaacct ataaaacaac gtgtttttgt aagtgatgct gaccgcgata ct
//
LOCUS       DATLQL010000012         1082 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_891054, whole genome shotgun sequence.
ACCESSION   DATLQL010000012 DATLQL010000000
VERSION     DATLQL010000012.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1082)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1082)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1082
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_891054"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..288
                     /locus_tag="VNB68_00100"
     CDS             <1..288
                     /locus_tag="VNB68_00100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35780.1"
                     /translation="GLYIFIGAVPHTDAAVGLIERDANGFILTGQDLMQNGHMRPRGW
                     TLDRQPFLLETNVPGIFAAGDVRHGSTKRVATGVGEGSIAVQLAHQYLTRV"
     gene            299..>1082
                     /locus_tag="VNB68_00105"
     CDS             299..>1082
                     /locus_tag="VNB68_00105"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030551 - cyclic nucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic nucleotide-binding domain-containing
                     protein"
                     /protein_id="HVD35781.1"
                     /translation="MLDINNYNNKNNEEINDKTMSIRASNNSDITHDHETFLHQIRLF
                     SGLTDQELKTIEKGEEVWFDAGDKILAEGEHDTFYVLLDGKVEVILRDESKEAVLSSY
                     DSGDHFGELPIILGWSNHQCAAYATKKSHLLKWDEDAFWRMIYSSPSLIRQILHSMAK
                     LLETLETVLQHNQKLIALGGLAAGLAHELNNPAAAANRTITQLSDSIYEWRSLVQKLN
                     VQHGMTAQQWSYVSELRNNTLKFDSNSPTRYPLYQNSTTSDLT"
BASE COUNT          352 a          180 c          234 g          316 t
ORIGIN      
        1 gggctgtata tatttattgg tgctgtgcca catactgatg cagctgttgg actgatagag
       61 cgagatgcaa atggttttat tttgactggc caagatttga tgcaaaatgg gcatatgcgt
      121 ccgcgaggtt ggacattgga tcgtcaacca tttttacttg agacaaatgt gccgggcata
      181 tttgctgctg gagacgtgcg ccatggttct acaaaaagag ttgctacagg agtaggagaa
      241 ggatctatag ctgtccagtt ggcacatcaa tatttgacaa gagtgtgaaa aagggtttat
      301 gttagatatc aataattata ataataaaaa taatgaagaa atcaatgaca agactatgag
      361 tatccgtgct agtaataata gtgatatcac tcatgatcac gagacatttc ttcatcaaat
      421 acgactgttt tcaggattaa ctgatcagga gctaaagacc atagaaaaag gagaagaggt
      481 atggtttgat gcaggagata aaatacttgc tgagggagag catgatactt tttatgtatt
      541 gttagatgga aaagtggaag tcatattgag agatgaatct aaagaagcag tactttcctc
      601 ttatgattca ggagaccatt ttggagagct tccaattatt cttgggtggt caaatcatca
      661 atgcgctgct tatgctacga agaaaagcca tctgttaaaa tgggacgaag atgcattctg
      721 gcgaatgata tatagttctc cttctttgat cagacagatt ctgcattcaa tggcaaagct
      781 tcttgaaaca ttagaaacag tattacaaca taatcaaaag cttatagcac ttggtggact
      841 ggctgccggt ctcgctcatg aattgaataa tcctgcagca gctgctaata ggacaataac
      901 gcaattatct gattctattt atgaatggag atctcttgtc caaaagttaa atgtacagca
      961 cggaatgact gctcaacaat ggtcatatgt ttccgaatta agaaataata cattaaagtt
     1021 cgattcaaat tccccaaccc gataccctct ttatcaaaat tctacgacta gcgatcttac
     1081 ta
//
LOCUS       DATLQL010000013         1564 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1956731, whole genome shotgun sequence.
ACCESSION   DATLQL010000013 DATLQL010000000
VERSION     DATLQL010000013.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1564)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1564)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1564
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1956731"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1073)
                     /locus_tag="VNB68_00110"
     CDS             complement(<1..1073)
                     /locus_tag="VNB68_00110"
                     /inference="COORDINATES: protein motif:HMM:NF012296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HVD35782.1"
                     /translation="MPGKLVSEFIGDPIKMLTKVAQQYGDISYFKLGREHVYLINNPD
                     LIEKILIHDHRNFKKGKRLQIAKGLLGEGLVTSEGEFHNRQRRLIQPIFHPKQIRSYG
                     NIMTDYAERMTDSWGDGEVLDINQEMMELTLGIICKSVLNYDITSEAQQVGKALTTCR
                     NYSKRLQNPIGQVLDKVPILPKVRGARKAMKELNTLVYELITDRRSKEIEYGDLLTRL
                     LRAQDTEIDHNSNSANTENFAGRMSDKQVRDEVMTIFIAGHETTANALTWTFYLLSEN
                     QDVERQLHEELDSILTNSNNDGTRTRRIVSTDDIPKLQYTEKVFRESMRLYPPVWTIG
                     RYVENDYSVGEYHIPSGSSILMS"
BASE COUNT          441 a          303 c          296 g          524 t
ORIGIN      
        1 tggctcatta gtattgaaga accagaaggt atatgatatt ctccaacaga ataatcattt
       61 tcaacataac ggccaatagt ccaaacagga ggatacaatc tcattgattc tctaaagact
      121 ttttccgtgt attgtaattt tgggatgtca tcagttgaga caattcgtct ggttctagta
      181 ccatcgttgt tactattggt aagaatagag tctagttctt catgtagttg tctctcgaca
      241 tcctgatttt cagaaagcaa gtaaaatgtc cacgtgagtg cattagccgt ggtctcatga
      301 cctgcgataa atattgtcat aacctcatct cttacctgtt tatccgacat tctgcctgca
      361 aaattttcag tattagcact attggagtta tggtcgatct ctgtatcttg tgcccgaagt
      421 aatctcgtca gcaggtcacc gtattctatt tctttacttc ttcgatctgt tattagttcg
      481 taaactagtg tattcaattc cttcattgct ttgcgagcac ctctaacctt gggcagtatg
      541 gggaccttat caagaacctg gcctatcgga ttctgaagcc tctttgagta gttacgacag
      601 gtggtcaacg ctttgccgac ttgttgggct tctgatgtta tatcgtaatt tagtacagat
      661 ttacatataa tgccaagtgt tagctccatc atctcctggt tgatatctaa cacctctcca
      721 tctccccaac tatcagtcat tcgctcggca taatctgtca tgatatttcc atatgaccta
      781 atttgcttag gatgaaatat tggttgtatt aatcgtctct gacggttatg gaactctcct
      841 tcacttgtta ctaatccttc tcctagcagt ccttttgcga tctgtagtct cttccccttt
      901 ttgaaattgc gatgatcgtg tatgaggatc ttttctatta gatcaggatt gttaattagg
      961 tatacgtgct cgcgtccaag tttgaaataa gatatgtcgc cgtattgttg agctactttc
     1021 gttaacattt tgataggatc accaataaat tcactaacca gcttacctgg cattttgtat
     1081 gccggacctg gaggatactg cgttaattga ctcatcagag ggtttccggt actggtgatt
     1141 ataaggttta ttgatttggt cggcaggtca gaatttgtcc ataacgaata acttaacacc
     1201 gtgaaactgt gtatctagag tagtaagatt agtatgacgt acaccaccgt gcaagacaaa
     1261 aacttgtatt ttttatttgt agcaacgatt tggaactcct gtcttatctt ctaaggggaa
     1321 ttgcaagcat attattagaa tcaatcatac atactgacac aacatctttt tatttattga
     1381 tgtagtataa gttataataa tgactggtca ggacagtaaa tcaaaaaaag ataatggtaa
     1441 tgtaacacca gaaacttgga ctgacgcgac aatgaaatca aaagaagaaa gagtagtttc
     1501 tttatcacca caacatgcca ttacaacagg tgaagatatg acttcggatc aaaatgagaa
     1561 aaga
//
LOCUS       DATLQL010000014         1885 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_181653, whole genome shotgun sequence.
ACCESSION   DATLQL010000014 DATLQL010000000
VERSION     DATLQL010000014.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1885)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1885)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1885
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_181653"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..360
                     /locus_tag="VNB68_00115"
     CDS             <1..360
                     /locus_tag="VNB68_00115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitase family protein"
                     /protein_id="HVD35783.1"
                     /translation="TNSRLEDLIEASLVVKGRKVSAQVRAMIVPGSQQVKIQAEKLGL
                     NKIFKEAGFEWRESGCSMCLGMNPDILAPGERCASTSNRNFEGRQGSGGRTHLVSPIM
                     AAAAAIQGHFVDVREWV"
     gene            402..980
                     /gene="leuD"
                     /locus_tag="VNB68_00120"
     CDS             402..980
                     /gene="leuD"
                     /locus_tag="VNB68_00120"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HVD35784.1"
                     /translation="MDSFKTIKSKITPLDIINVDTDQIIPKQFLKLVQKTGYGNFLFY
                     DWRFDQKNKLRNDFILNDPKYAERLILLTRENFGCGSSREHAVWALFDYGFRVIIAPS
                     FADIFFNNCFKTGMLPIVLESAEIDYFFSLDPNNYVEVNLMEQTLSTDKKIINFKIDP
                     MKRRMLLEGTDEIDYTLQLEDRITNYEKRYHR"
     gene            complement(1103..1396)
                     /locus_tag="VNB68_00125"
     CDS             complement(1103..1396)
                     /locus_tag="VNB68_00125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HVD35785.1"
                     /translation="MPIAILPDVDEQRCIGCALCVEICTALGPDVLRVKPVEGWKRGK
                     AFVFYPERCISDGACLGVCPTHAIFWMRPMEYTSGQPVALHKNGVFDKGWEEG"
     gene            complement(1516..1782)
                     /locus_tag="VNB68_00130"
     CDS             complement(1516..1782)
                     /locus_tag="VNB68_00130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35786.1"
                     /translation="MSKRLIKFELNLFVMARSFEEWWTSVPLDLKQKARKGDEANKPL
                     LNQVNYVLLHLHLAGKHDAKPSHEELKDWLHSGQVDVLRMAPKK"
BASE COUNT          611 a          319 c          380 g          575 t
ORIGIN      
        1 accaattcaa gattggaaga ccttatagaa gcttcgttgg ttgtcaaggg aagaaaggtt
       61 tctgctcaag taagagccat gatagttccg ggatctcaac aggtaaaaat acaagccgaa
      121 aaattaggtt tgaacaagat cttcaaagag gcaggctttg aatggagaga atctggatgt
      181 agcatgtgtt tgggtatgaa tcctgacata ttggctcctg gagagcgttg tgcgagtaca
      241 tcgaacagaa attttgaggg aagacaaggc agtggtggaa gaacgcatct tgttagtcct
      301 atcatggccg ccgcagctgc aattcaggga cattttgttg atgtaagaga atgggtgtga
      361 ctagtgttta gtcattagag aaattagttg attgatttaa tatggattca tttaagacta
      421 ttaaaagtaa aataacgcct ttagacataa tcaatgtaga tactgatcaa ataataccga
      481 aacaatttct caaattagtt caaaagactg gctatggtaa ctttcttttt tatgattggc
      541 gttttgatca gaagaacaaa ttgaggaatg atttcatatt gaacgatcca aaatacgcag
      601 aaaggctaat tttgcttact agagaaaact ttggatgcgg tagttcccgt gaacatgccg
      661 tatgggcatt atttgattat ggttttcgag tcataatagc tccctctttt gcagacatct
      721 tttttaataa ttgcttcaag acgggaatgt tgcctattgt acttgaaagc gcggaaattg
      781 attatttctt tagtctcgat cctaataatt atgtagaagt gaatttgatg gagcaaacac
      841 tttcaactga caagaagatc ataaatttca aaattgatcc gatgaaaaga agaatgttac
      901 ttgaaggaac tgatgaaatt gattataccc ttcaattaga ggataggatc actaactatg
      961 aaaagagata tcacagatag gtacagatag gtagtaggat cgttttgtaa tataaaagta
     1021 gattgtaagc tatgtcaggt catagtatag acgcgtatag tgaataaaag taaaaaatag
     1081 tggttatgaa aagatgtttt gtttaacctt cttcccagcc cttgtcgaag acaccgttct
     1141 tgtgcagagc aactggttgt ccagaggtat attccattgg tctcatccag aatattgcat
     1201 gtgttggaca tacaccaaga catgctccat cggaaataca tctctctgga tagaagacaa
     1261 atgctttgcc tctcttccat ccttcaactg gttttactct taatacatct ggcccgagag
     1321 cggtgcaaat ttctacacac agtgcacagc caatacacct ttgttcatca acatctggta
     1381 gtatagcaat tggcattcat taattcacta caggtgcata tgtttgaaac tatttaaaca
     1441 ctatgccttg ttcaaaacag tgttataaca tacggtaaaa agaaaagaaa agaaaaataa
     1501 aataaataat ggtttttact tcttaggtgc cattcttagt acgtctactt gaccgctatg
     1561 cagccaatcc tttagctctt catgactagg cttcgcatca tgcttccctg ctagatgaag
     1621 atgcagtaga acgtagttaa cctggtttaa taacggcttg tttgcttcat cacctttgcg
     1681 agctttttgc tttaaatcaa gtgggacaga cgtccaccat tcttcgaacg aacgtgccat
     1741 aacaaacaag ttaagttcga actttataag ccttttggac atcagggcat agctgaatta
     1801 atttgtagtc aacttagtta caaaaaatat aatactattg aatgcatcaa aatgtttcca
     1861 tacgataacg catgccattt gaaat
//
LOCUS       DATLQL010000015         1191 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1957355, whole genome shotgun sequence.
ACCESSION   DATLQL010000015 DATLQL010000000
VERSION     DATLQL010000015.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1191)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1191)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1191
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1957355"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1191)
                     /locus_tag="VNB68_00135"
     CDS             complement(<1..>1191)
                     /locus_tag="VNB68_00135"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HVD35787.1"
                     /translation="AAILDEIRKEVGVGGSGGGGGIVVGGSGVVVGTAPALASNRTSS
                     TPFSTSSFTSASSNITNNNIINKPKFHILHLSRSVGKKQAVEAASQIAKGEIYAFMDS
                     DCDMAIDAVEKAAQVFISDKQLGALTSHGRVRGAHTGNVLQKMQDVYIDGSCRAIKAM
                     ETTFSSVTCCSGSLSFYRRAAIQHFIHDWAHDRFLGMDFKFCTDRRMTAYVLGTKPTL
                     VRDKDEDQKGVEGEKVRANNNTTTAFASPILQTGNDDLNTLKSTSDPDIDDTKAPQHY
                     WNVKYSQNIRVNVGVPTTLMALLKQQIRWKKSFIRSLSSTGGMYWRRPFYPALLYYIQ
                     TAMKFLRPYILFHALFVLPFEGDIRSTILWLLGVLFTGMIYSVDFRLRNPGDRLWIYR
                     PVFT"
BASE COUNT          348 a          252 c          202 g          389 t
ORIGIN      
        1 atgtaaagac tggacggtat atccatagcc tatctcctgg attacgtagt ctaaagtcta
       61 ctgaatagat catcccagta aatagcactc ctagaagcca aagaatagtt gaccttatat
      121 caccttcaaa tggaagcaca aaaagtgcat gaaataatat ataaggacga agaaatttca
      181 tggcagtttg gatataatat aataacgctg gataaaatgg ccgtctccaa tacataccac
      241 ctgttgaaga aagacttctg ataaagctct ttttccatcg aatttgctgt tttagaagtg
      301 ccatcagtgt ggtaggcact ccaacattca ctctaatatt ttgactatac tttacgttcc
      361 agtaatgttg tggagctttt gtatcatcta tatctggatc tgaagttgat ttcagtgtat
      421 tcaaatcatc atttccagtt tgcagtatgg gagaagcaaa agcagtagta gtattattat
      481 tagctcttac tttttctcct tctactcctt tttgatcttc atctttatct cgtactagcg
      541 taggctttgt tccaagcaca tatgcagtca tacgcctatc tgtacaaaac ttaaaatcca
      601 ttccaagaaa gcggtcgtga gcccaatcat gtatgaaatg ctgaatagct gctcttctat
      661 agaaactaag agatccagag cagcatgtaa cagaagaaaa agtggtttcc attgccttta
      721 tagccctaca tgaaccgtct atgtatacat cttgcatctt ttgtaagaca ttaccagtat
      781 gtgcacccct tactcttcca tgtgaagtca aggctccaag ttgtttatct gatataaaga
      841 cctgtgctgc cttctctact gcatcgatag ccatatcgca gtcactgtcc ataaaggcat
      901 aaatttcacc ttttgctatt tggcttgcag cttctactgc ctgctttttg ccaacactcc
      961 tagatagatg aagaatatgg aattttggtt tattaataat attattatta gtaatgttag
     1021 aagaagcaga agtaaaagaa gaagtactaa agggggttga tgatgttcta tttgatgcta
     1081 atgctggtgc tgttcctact actactccac ttcctcctac tactattcca cctcctcctc
     1141 cacttcctcc tactcctact tcctttcgta tctcatctaa aattgcagct g
//
LOCUS       DATLQL010000016         2203 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1602895, whole genome shotgun sequence.
ACCESSION   DATLQL010000016 DATLQL010000000
VERSION     DATLQL010000016.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2203)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2203)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2203
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1602895"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..650)
                     /locus_tag="VNB68_00140"
     CDS             complement(<1..650)
                     /locus_tag="VNB68_00140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid--tRNA ligase-related protein"
                     /protein_id="HVD35788.1"
                     /translation="MTSPIQRSHFANQLDETLIGHKISIGGWIEDIRDIGKLVFLMVR
                     DITGVVQVVITEDKIHLIKNAPRQSSIILSGLVQMSKAKDFAVEVKVEDLTVFTKAIH
                     PLPIDPTGRIESVLDKRLDSRALDLRNPKVSALFSIRSEALHIIRSTFQGKRFIEVNT
                     PKIIGSATEGGANLFEFKYFRKNAYLAQSPQLYKEQLILALDRVFEIGPYFRAEKS"
     gene            complement(664..1176)
                     /locus_tag="VNB68_00145"
     CDS             complement(664..1176)
                     /locus_tag="VNB68_00145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35789.1"
                     /translation="MKTPICSFDAKTGILCTKCETKLKSGHLKQAEIEAAIRLTRIAE
                     RNQDINKFTMVGAAEVDSDSVLILRGSDISILRANPTLMKEVKEEFQRQVWFIEAEAT
                     DRRFMENLFFPCKVQSINLIWLPDGSKLTKVVIESRCDSMIPFDLQQIQKIAQTLRNI
                     ELHIEFEKPK"
     gene            complement(1557..>2203)
                     /locus_tag="VNB68_00150"
     CDS             complement(1557..>2203)
                     /locus_tag="VNB68_00150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35790.1"
                     /translation="DTDISIFNRQEFPINLIWNAIIIGGNNSSSIQRTLQPQTSTAIV
                     CRDLLPMFEIQNSSQQMIEGFVTIRVPQDGTVMESHPKNNAVTATGPTPQDDMNLLDV
                     QVFYTANAISTLPHPVLMDKIVFSIGKDPSGKIPGKMLLKILDASVPSKVNATSDPEW
                     QIKNILAKEYKLSVEDLRLLNIRISGVSMSVGTMIDDHAISSLRVNPQVLAYGH"
BASE COUNT          605 a          438 c          405 g          755 t
ORIGIN      
        1 tgagattttt ctgctctaaa atacggtcca atttcaaaca ctctatctag ggccagaatt
       61 agttgctctt tatataactg agggctttga gccaaatagg cattttttct aaaatatttg
      121 aattcaaaca aatttgctcc gccttcggtt gcacttccaa ttatttttgg tgtattcact
      181 tcaataaacc ttttaccttg aaatgtggag cgtatgatat gcagcgcttc cgatcttatg
      241 gaaaagagag cagatacttt aggatttcta agatcaagtg ctcttgaatc taatcgttta
      301 tctaacacag actcaattct gcccgttgga tcgataggca gaggatgaat ggcctttgta
      361 aaaacagtca agtcttcgac tttcacttct actgcaaaat cctttgcttt actcatttgt
      421 actaatcctg agagtataat ggaactctgt ctaggagcat ttttgattag atgtatctta
      481 tcttcagtta ttaccacttg aacaactcca gttatatccc taaccatcaa aaatactagc
      541 tttccaatat cacgaatatc ttctatccat ccgccaatgc ttatcttatg cccaatgagc
      601 gtttcatcta attgatttgc aaaatgggac ctttgaatcg ggctagtcat gtggttgatc
      661 tttctactta ggtttctcaa attctatatg taattctata ttacgtaagg tttgggcgat
      721 tttttgaatt tgttgaaggt caaatggtat cattgagtca catcgacttt ctattaccac
      781 ttttgtcaat ttgctaccgt caggaagcca gattaggttg atcgattgaa ccttacatgg
      841 aaagaaaagg ttctccatga accttctatc tgttgcttct gcctctataa accaaacttg
      901 cctttgaaat tcctctttaa cttctttcat tagagttgga tttgcgcgta aaatactgat
      961 atccgatcct ctcaatatca agaccgaatc tgagtccact tcggctgccc ctaccatagt
     1021 aaacttattt atgtcttgat tacgttctgc gattctggtg agccttatgg ccgcctcgat
     1081 ttctgcctgt ttcaaatgtc cagattttag ctttgtttca cattttgtgc aaagtatacc
     1141 cgtttttgca tcaaaagaac aaattggagt tttcaatgtt taccactttg taataatctt
     1201 aaaatgtact gtctttcctt aatataacct gttggagatt aagagctttg aaaggactct
     1261 cgagcagcct ttttctacat caataaattg gtcagcacaa atataaccga atagctaggg
     1321 ttaaagacat aaaattcaaa atttgacctt attttgtcct cctcctattc ttgaattaaa
     1381 aataaggcac agtacaatgt gaaagaaatt accatgggtc caagaggctt cctgcattat
     1441 ttagaatcat tattgtaatt acagactggc tctatcgttg tattgcagcc ctgaaccacg
     1501 tttaggatca aaatgagtta aagatcaaaa tttgattctt gtttccaaaa gggggatcaa
     1561 tgaccatacg ctaagacttg cgggtttact ctcaatgatg agatcgcatg atcgtctatc
     1621 atggttccta cgctcatact aactccgctg atcctgatat ttaggagcct taaatcttca
     1681 acagatagct tatattcctt tgctaagatg tttttgatct gccattcagg gtctgacgtt
     1741 gcgttcactt ttgaaggtac agaggcgtcc agtattttca acaacatctt tccggggatc
     1801 tttcctgatg gatcctttcc aatagagaag acaatcttgt ccattaatac tggatgtggc
     1861 agagttgaaa tggcatttgc tgtataaaat acttgaacgt cgagtagatt catgtcgtct
     1921 tgtggcgtgg ggccggtagc agttaccgca ttgtttttag gatgagattc catgactgtt
     1981 ccgtcctgag gaacgcgtat agttacgaaa ccctctatca tttgctggct gctgttttga
     2041 atctcaaaca ttgggagtaa atccctacag actatggccg tggatgtctg aggttgcaaa
     2101 gttctttgta ttgaactgct gttattacca ccaatgatta tggcattcca aatcagattg
     2161 ataggaaatt cctgcctatt gaaaatgctg atgtcagtgt cgt
//
LOCUS       DATLQL010000017         2055 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_537890, whole genome shotgun sequence.
ACCESSION   DATLQL010000017 DATLQL010000000
VERSION     DATLQL010000017.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2055)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2055)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2055
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_537890"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..385)
                     /locus_tag="VNB68_00155"
     CDS             complement(<1..385)
                     /locus_tag="VNB68_00155"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020640.1"
                     /note="produces ATP from ADP in the presence of a proton
                     gradient across the membrane; the B subunit is part of the
                     catalytic core of the ATP synthase complex; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATP synthase subunit B"
                     /protein_id="HVD35791.1"
                     /translation="MIIDGVTTASFDELVEIETDDGERRLGKVLEIGNGKAVVQVFEG
                     TTGLAITGTRVKFLGKTMAMPVSQELLGRVFDGLGRPNDGLPDPVADKFLDVNGEPMN
                     PQSREYPTSFIQTGVSVIDGMLTLVR"
     gene            complement(435..>2055)
                     /locus_tag="VNB68_00160"
     CDS             complement(435..>2055)
                     /locus_tag="VNB68_00160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="V-type ATP synthase subunit A"
                     /protein_id="HVD35792.1"
                     /translation="TSGLKPGEEVVGTGQPLSVLLGPGIIGRIYDGIQRPLDDIAEKS
                     GAFIGRGITTSPVDMKKKFKFNPTVKKEDTIFGGSILGTVEETPLLTHKILVPPNNAE
                     ATITEIVKEGDYDLEDVIAQAKSKSADKIELKMYHKWPVRKPRPYAERYDPTVPLITG
                     QRIIDTYFPIAKGGTGAIPGGFGTGKTVTLHQIAKWADSKVVVYIGCGERGNEMTEVL
                     VEFPHLIDPRSQRPLMERTVLVANTSNMPVAAREASIYTGVTIAEYYRDMGYDVVLVA
                     DSTSRWAEALREMSGRLEEMPAEEGYPSYLASRLAEFYERAGRIRALGSPDRSGSVTI
                     VGAVSPSGADFTEPVTTHTIRFIKTFWALDTRLAYSRHYPSINWMQSYSGYLEDISKW
                     WKENVSPDWYDLRAESYHILQREDTLKEIVRLLGPEALPDEEKLVMEVARMLKIGILQ
                     QNSFDKVDTYCSPVKQLKLVRLMVKFYKESQKALKEGKSLADIRALPIITTLLKAKFE
                     VTDEQISKLDEIDKQLSDSFKGDIEEVKVSV"
BASE COUNT          565 a          472 c          330 g          688 t
ORIGIN      
        1 ctcttaccaa agtcaacatc ccgtcaatga cagaaactcc tgtttgaata aatgaagttg
       61 gatattctct actttgagga ttcatgggct ctccgttaac atcaagaaat ttatcagcaa
      121 cgggatcagg caagccatcg tttggtcttc caaggccatc aaatacgcgt ccaagtaatt
      181 cttgggatac tggcatggcc atagtttttc caagaaactt gactcttgtt ccagtaattg
      241 ctaatcccgt cgttccttca aaaacctgaa ctacagcctt gccgttccct atttctagaa
      301 cttttcctaa tcgtcgttca ccatcatctg tttctatttc tacaagttca tcaaatgaag
      361 ctgttgttac tccatctatt atcataagtg gtccttttat ttctgctatt ttggtatact
      421 caattccagt tgttttagac agataccttt acctcctcaa tgtccccttt gaatgaatct
      481 gatagttgtt tatctatttc atctaacttt gaaatctgtt catccgtaac ttcaaatttt
      541 gcttttaata gagtggttat tattggcaaa gctctaatat ctgctaatga ctttccttct
      601 ttaagtgcct tctgtgattc tttatagaac tttaccataa gtctcaccaa ttttaattgt
      661 ttaactggac tacaataagt atcaacctta tcaaaagagt tctgctgcaa aataccaatc
      721 tttaacattc tagctacttc catgacaagc ttctcttcat ctggaagtgc ttcaggtccc
      781 aataatctaa caatttcttt tagagtatct tcacgttgca gtatatggta tgattcagct
      841 ctcaagtcat accaatcagg gcttacgttt tccttccacc atttagaaat atcttcaaga
      901 taaccagaat aagactgcat ccaattaatt gatggatagt gtctagaata tgctaatcta
      961 gtatccaatg cccagaaagt cttgataaat cgaattgtat gagtcgttac tggttcggta
     1021 aagtccgcac ctgatggaga tactgcgccc actattgtca cagacccaga acgatctggt
     1081 gaacctaatg ctcttattcg tccagctctt tcataaaatt cagcgagtct tgatgccaag
     1141 tatgacggat aaccctcttc tgcaggcatt tcttccaatc gacctgacat ctcccgaagt
     1201 gcttctgccc atctacttgt agaatcagct acgagaacca catcataccc catatcgcga
     1261 taatactcgg caatagtaac acctgtataa attgatgctt ctctagcggc gaccggcatg
     1321 ttactggtat tagcaacaag tactgttctt tccattaacg gcctttgaga tctagggtca
     1381 attaaatgtg gaaattctac aagaacttct gtcatttcat tacctcgttc tccacatcca
     1441 atatagacaa ctaccttaga gtctgcccat ttagctattt gatgcaaagt tacagtcttt
     1501 cccgtaccaa atccacctgg aatagcacca gttcctcctt ttgcaatagg aaaataagta
     1561 tcgataattc tttggcccgt aattagtggt actgtaggat catatctttc agcatagggt
     1621 cgcggttttc taacaggcca cttgtgatac atctttaatt caattttatc tgcactcttg
     1681 cttttcgcct gtgcaatgac atcttctaaa tcataatcac cctcctttac aatttcagta
     1741 attgttgcct cagcattatt tggtggaacc aaaattttgt gagttaaaag aggagtttct
     1801 tcaactgtcc cgagaataga tcctccaaaa atagtatcct cttttttcac agttggatta
     1861 aatttgaatt ttttcttcat atcaacaggg ctagtagtta tgcctcttcc gatgaatgct
     1921 ccagattttt ctgcaatgtc atccaacggt ctctgtatac cgtcataaat ccttccaata
     1981 attccgggac caagaaggac cgaaagtggt tgtcctgtac caacaacctc ttctcctggt
     2041 ttaagaccgg atgta
//
LOCUS       DATLQL010000018         3195 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_183204, whole genome shotgun sequence.
ACCESSION   DATLQL010000018 DATLQL010000000
VERSION     DATLQL010000018.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3195)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3195)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3195
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_183204"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1023
                     /gene="serS"
                     /locus_tag="VNB68_00165"
     CDS             <1..1023
                     /gene="serS"
                     /locus_tag="VNB68_00165"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004828 - serine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006434 - seryl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HVD35793.1"
                     /translation="LDLQMSTTETKFNELIFSVPNLLDESVPIGKNSEDNVLVKVFGD
                     IKKKNFRYQDHVDLSNSLGLLDLDRAAKVAGARFYFLKNDLVKLNQALINYALDYLAE
                     NGYTLIQPPFMIRGDAIKGAVILNDFQDVIYKIDQEDLYMIGTSEHAIASMHMEEILD
                     GKKLPIRYGGLSPCFRKEAGAHGKDMKGIFRVHQFEKVEQFVYSNPESSNAEHERMLS
                     LTEKFYKNLNLPYRVMLLCSGDTGKISSKTYDLEAWMPGQDAYREIVSCSHCKEYQAR
                     RLSIRYRDRIDQETQFVHTLNSTLVATERTMVAILENYQTAEGDVIIPEALRKYMSGV
                     SEIRPK"
     gene            complement(1137..2018)
                     /locus_tag="VNB68_00170"
     CDS             complement(1137..2018)
                     /locus_tag="VNB68_00170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HVD35794.1"
                     /translation="MELLYDYPLYRPPSEANSLIFQVTLGCSFNKCSFCNMYRTKQYV
                     ERSWGEIKNEIDIAHESQPDAGRIFLADGDALSLSTSRLIQILEYLQGKFSKLERISC
                     YAMPRNLIQKNPSELSQLRRAGLGMLYVGIESGNDLLLKRVTKGATSRGIIQGCTRAK
                     ECGFTLSCMVILGLGGKKYTQDHIKDTARILSEISPHYLGALTLILEEGIYAEFMTKF
                     GEKFEHLDDFEILDELQRLIEFLQPNSPIIFRANHASNIYSVGGTLPEDKGRLTSLIM
                     ELRRHPEMLKPKVLRRF"
     gene            complement(2331..2645)
                     /locus_tag="VNB68_00175"
     CDS             complement(2331..2645)
                     /locus_tag="VNB68_00175"
                     /inference="COORDINATES: protein motif:HMM:NF014013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030677 - ribonuclease P complex
                     [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0001682 - tRNA 5'-leader removal [Evidence
                     IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rpp14/Pop5 family protein"
                     /protein_id="HVD35795.1"
                     /translation="MLRRKNKRRYLAVMYDPNTSQTQVKGDIQGRFMELFGSIATELA
                     YLRAYHSKQNGILILSCDLEYLERILFTIAMMEQPMTVVMMSGTIRKLRERLIQSEIS
                     LN"
     gene            complement(2639..>3195)
                     /locus_tag="VNB68_00180"
     CDS             complement(2639..>3195)
                     /locus_tag="VNB68_00180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35796.1"
                     /translation="IRAIDLGIDFDSIGEAIIMARRLNIETIGVKNTPDLNSSCDVVL
                     RVKNRYPVQGNFRQLVVCEDISGIGSKTDLLTIQDFSRIRNDLAKKIRPNLGLEISIA
                     DARRLDANALGRWLSQAKYVYRLCKSARCQFIISSGAQSIFGMVSSRTFESILTMLNI
                     SPANYWAELSAWLDSKDTVRSYVC"
BASE COUNT          948 a          653 c          613 g          981 t
ORIGIN      
        1 ttagatcttc aaatgtccac taccgaaaca aaatttaatg agcttatctt ttctgttccc
       61 aatctgttag atgagtcggt acccatcggc aagaattcag aggataacgt tctcgtgaaa
      121 gtttttggtg acattaaaaa aaagaatttc aggtatcaag atcacgtaga cttgtctaat
      181 tccctgggtt tgcttgatct tgaccgcgca gcaaaggtcg ccggtgcgag attttacttt
      241 ctgaaaaatg atctagttaa gttaaatcaa gcattaatca attatgcact ggactatctt
      301 gcagaaaatg ggtatacttt gatccaacca ccattcatga taaggggaga tgcaataaag
      361 ggagctgtga tcttgaacga ttttcaggat gtaatttaca aaatagatca agaagacctt
      421 tacatgatag ggacttcgga acacgctatt gcgtcgatgc atatggaaga aatattggac
      481 gggaaaaagc tgccaattag gtacggtggt ctaagtccat gttttagaaa ggaggctggg
      541 gctcatggca aggacatgaa agggattttc agggttcatc agtttgaaaa ggtagaacaa
      601 tttgtgtatt caaatccaga aagttctaat gcggagcatg agagaatgtt atcccttact
      661 gaaaaattct ataagaacct caacctacct tatcgagtga tgctattatg tagcggagac
      721 acaggcaaga tttcatccaa aacttatgat ttggaagcat ggatgcccgg acaggacgcc
      781 tacagagaga tagtttcttg ctctcattgc aaagagtatc aggcgcgtag gttaagcatt
      841 cggtatagag ataggataga tcaagagacc cagtttgttc ataccctcaa tagcactttg
      901 gtagccactg aacgaacaat ggtcgccatt ctcgaaaatt atcaaacagc tgaaggagat
      961 gtcattattc cagaagccct tcgcaaatac atgtccggtg tttctgaaat tagaccaaaa
     1021 taacatgttg tccgtgatgt gtcgcacacg acttgtgtga aacaatcgtt cggcaatagg
     1081 taattgtacc aaaaaatcta ctaggataca ttggacgtgg ggaagttatc tgatcgttag
     1141 aaccttctca ataccttagg ttttagcatt tccgggtgcc gccttaattc cattattaaa
     1201 gacgttaatc tacccttgtc ttcgggcagt gttcctccaa cagaatatat gtttgaagca
     1261 tggtttgccc tgaaaataat tggcgagttt ggctgcaaga attctatcaa tctttggagt
     1321 tcatcgagta tctcaaaatc atctaggtgt tcaaattttt caccgaattt tgtcatgaat
     1381 tcggcataaa tcccttcttc caagatcaac gttaatgcac caagataatg tggagatatt
     1441 tcactcaata ttctcgccgt atcttttata tgatcttggg tgtatttttt tcctcccagg
     1501 cccaagatta ccatgcaaga aagagtgaat ccacattctt tggctcgagt gcatccttga
     1561 attattccac gcgatgtagc cccttttgta accctcttga gcaacaaatc attgccagat
     1621 tctatcccca catataacat acccaatcct gcgcgtctca attgagataa ctcagacggg
     1681 tttttttgga tgagatttct aggcatagcg taacaagata tccgctccaa tttggagaat
     1741 tttccttgga gatactcaag tatttggatt aacctggaag tagaaagact caatgcgtct
     1801 ccatcggcga gaaaaattct gccagcgtca ggctgtgact cgtgggctat atctatttca
     1861 tttttaattt ctccccatga tctttcaaca tattgtttag ttctgtacat gttgcaaaag
     1921 gaacatttat tgaaagaaca ccccaaagtg acttgaaaga tcaatgaatt agcttcagaa
     1981 ggaggtctat acaacgggta atcatataat aattccataa ggatttaaaa tcagttggca
     2041 tcacatttaa cctatacgaa ggaccaatta aaatctggat ttcttatcta ctgtacctca
     2101 aaaaggtgaa gactatgttt tggtttcatt tgtcttctac ttgaggtgag ttatcactag
     2161 attttgccga taatttaata ccctggtttt ctgcctaaca tagtgtaatg aaatatgcta
     2221 ttattttcgg gtcagttcgt cgcgagttcg tcatcgtatt aaactcagac tggagcagca
     2281 tatactcact tcatccccat gggtacaaat cctatcacat ttttaagcgt tcagtttaga
     2341 ctaatttcac tttgaatcag acgttcccga agcttcctta tagttcctga catcatcaca
     2401 acagtcattg gctgctccat cattgctatc gtaaaaagga ttctttcaag gtactccaaa
     2461 tcacaactca atatcaggat cccattttgt tttgaatggt acgcccttaa atatgccaat
     2521 tccgtggcta tgcttccaaa aagttccata aaacgtccct gtatatcccc cttcacttgg
     2581 gtttgagatg tatttggatc gtacattact gcaagataac gacgcttatt ttttctcctt
     2641 aacatacgta agatcttacc gtatcttttg agtctaacca tgccgataat tcggcccagt
     2701 aattcgcagg agatatattt aacattgtca ggatggattc gaatgtacgt gatgatacca
     2761 tcccgaagat cgattgagcg ccacttgaaa ttatgaactg acatcgagct gatttacaaa
     2821 gtcggtaaac atatttagct tgcgacaacc accgtcctaa agcgtttgca tctagccttc
     2881 tggcgtcagc aatagaaatt tctaagccca agtttggcct gattttcttc gcaaggtcat
     2941 tgcgaattct cgagaaatcc tgaattgtca aaagatcagt cttgctacca ataccggata
     3001 tatcttcaca aacgaccaat tgacgaaaat taccttgcac ggggtatcta ttttttaccc
     3061 gtaatacgac atcgcagctc gaatttaagt cgggggtatt tttcactcct atagtttcaa
     3121 tattaagtct cctagccatt ataatagcct ctccaatact atcaaaatct attccaagat
     3181 ctattgccct gatga
//
LOCUS       DATLQL010000019         1053 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1603882, whole genome shotgun sequence.
ACCESSION   DATLQL010000019 DATLQL010000000
VERSION     DATLQL010000019.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1053)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1053)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1053
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1603882"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1053)
                     /locus_tag="VNB68_00185"
     CDS             complement(<1..>1053)
                     /locus_tag="VNB68_00185"
                     /inference="COORDINATES: protein motif:HMM:NF012897.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aconitase family protein"
                     /protein_id="HVD35797.1"
                     /translation="GVKVKVPIQITPGSEMIRGTIERDGQMKALKDIGANVLANACGP
                     CIGQWNRPELKKGEPNTIVTSYNRNFPGRNDGSRETMNFIGSPELVIALALGGRLSFN
                     PLIDELTANDCTKFKLIPPKVAPEIPSNGFVYNQDVYLPPTKESQNVDVLIDPNSSRL
                     QKLEPFPHWDGNDFEKLPMLVKIKGKCTTDHISPAGPWLMYRGHLDKISDNLLLGAVN
                     AFHEDQVGKGKNIINHEMELLPYIAREYKSRKIRWIIIGDSNYGEGSSREHAAMTPRY
                     LGCCAVISRSFARIHETNLKKQGILALTFVNPNEYDKILEDDRLSILGLKNLQEGKHL
                     TCIIHHSNATDDEILL"
BASE COUNT          278 a          226 c          190 g          359 t
ORIGIN      
        1 tttaacaaga tttcatcatc agttgcgtta ctatggtgga taatacatgt aagatgttta
       61 ccttcctgga gatttttaag acctaatatg cttaacctat catcctctaa aatcttatca
      121 tactcatttg ggtttacaaa agtaagagca agtatccctt gttttttcag gtttgtttca
      181 tgtatccttg caaagctcct tgaaataact gcacaacagc ccagatagcg tggagtcatt
      241 gcggcgtgtt ctcgactact tccttcaccg tagttactat cgccaattat tatccatctt
      301 atttttcttg atttgtattc acgtgctata tagggtagta attccatctc atgattgatg
      361 atgttcttac cctttccaac ttgatcttca tgaaacgcat taaccgcacc aagaagaaga
      421 ttatcgctaa ttttgtctag atgacctcga tacattaacc aggggccagc aggtgaaata
      481 tgatcagtgg tacacttacc tttgatcttt accagcattg gtagcttttc aaaatcgttc
      541 ccatcccagt gagggaatgg ttccagcttt tgtagtctgg aactatttgg atcgattagt
      601 acatccacat tttgagattc tttggtaggt gggaggtaaa catcttgatt atatacaaaa
      661 ccatttgaag ggatctctgg cgccaccttg gggggaatta gcttgaattt agtacaatca
      721 tttgcggtca attcgtcaat taaaggatta aacgaaagcc taccacctaa agctaatgct
      781 attaccaatt ccgggctgcc aatgaagttc attgtttccc tactcccatc atttcgaccc
      841 ggaaaatttc tattataaga tgttactatg gtattaggtt cacctttctt aagctcgggt
      901 ctattccact gtccaataca aggaccacaa gcatttgcta gtacatttgc tccgatatcc
      961 tttagtgctt tcatctgtcc gtccctttcg attgtgccgc gaatcatttc agatcctggg
     1021 gtaatttgga taggaacctt tactttcact cct
//
LOCUS       DATLQL010000020         1151 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_538116, whole genome shotgun sequence.
ACCESSION   DATLQL010000020 DATLQL010000000
VERSION     DATLQL010000020.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1151)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1151)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1151
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_538116"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            218..643
                     /locus_tag="VNB68_00190"
     CDS             218..643
                     /locus_tag="VNB68_00190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35798.1"
                     /translation="MSDPPIATESDSDEVKVRLKHNDWEVEITCKEDKLKSVIENVLS
                     GVDSTGIETPGIANELVELKRQIEELKSRLTSVESLPSTVGVNYGERRPSQRIGMTCR
                     SLIDSLLSDNFFTEERQLGQIHEEISRRGYNYDRTAVSH"
     gene            complement(749..>1151)
                     /locus_tag="VNB68_00195"
     CDS             complement(749..>1151)
                     /locus_tag="VNB68_00195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35799.1"
                     /translation="LDLAKRISLHYSTTELIEQFGYFVKITPEGPMVDVSFSQIKLSD
                     KQVVVLYLVAMKIAKELGKAENEKVSIPQIQSTTGLNPKSISSRLSELVKSGLVIKES
                     NKNGPQIGLYIISTAGIHWLASSLSKKKNPL"
BASE COUNT          365 a          209 c          233 g          344 t
ORIGIN      
        1 ctcttaatgc accacctaca ctcaaaaatg aatctagcgg tgacatttct aagatgctcc
       61 ccaatagttt ggaatccata tgttgttgaa gatttaattg tgcattcatg ttgaacaaca
      121 atatacctta gtggttattt attaatattg cgcatgatgc acaatatgaa caccaacaag
      181 tttatgttat tctgacagtt acccaaaaga tactttaatg agcgaccccc caatcgcgac
      241 tgaatctgac tctgatgaag tcaaagtcag gctaaagcat aatgattggg aggtcgagat
      301 cacatgcaag gaagataaac taaagagcgt gattgaaaac gtgttgtcgg gagttgattc
      361 gacggggatt gaaactcccg gtattgcaaa tgagttagtt gaattaaaac gtcaaattga
      421 agaattgaaa tctagactaa catcagttga atcgttgcct tcaacggtgg gcgtaaatta
      481 tggcgaacgg cgaccatctc aaaggattgg tatgacttgt agaagtttaa tagattcatt
      541 gctaagtgat aatttcttta ctgaagaaag acaactgggt caaattcatg aggagatttc
      601 aaggcggggt tacaattatg acagaacagc agtatcacat taactaacag acatggtccg
      661 agagaggact ttggtaagag tcgggactat acgaaattac cgctatattc aaaaggaata
      721 catatctccg gacacaaacc atcaaactct ataagggatt cttttttttc gaaaggctcg
      781 acgcaagcca gtgaattcct gcagtgctaa taatatacaa tcctatttgt ggtccgtttt
      841 tatttgattc ctttatcaca agtcctgact tgaccaattc tgaaagtcgt gagctaattg
      901 attttggatt taaacccgta gttgattgaa tctgcggtat agatactttt tcgttctcag
      961 ccttgcccaa ctcctttgct attttcatag cgactaggta cagaacaacc acctgtttgt
     1021 cagataattt tatctgagag aaagagacat ccaccatagg tccttcaggc gttattttta
     1081 cgaaatagcc aaattgttca atgagttcgg ttgtagaata atgtaacgat attcttttgg
     1141 ctaagtcaag a
//
LOCUS       DATLQL010000021         1197 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1071178, whole genome shotgun sequence.
ACCESSION   DATLQL010000021 DATLQL010000000
VERSION     DATLQL010000021.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1197)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1197)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1197
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1071178"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            263..970
                     /locus_tag="VNB68_00200"
     CDS             263..970
                     /locus_tag="VNB68_00200"
                     /inference="COORDINATES: protein motif:HMM:NF017758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF892 family protein"
                     /protein_id="HVD35800.1"
                     /translation="MELARNKSSKSTKGKRQKKTRRARNTSRQNAKRLTLGEKLAQYL
                     NETLSFENAAVSRLQSRIKEPQLEDAKQQLQQHLEVTREQQNRLKQLIINLGARPTND
                     SGQLPILIPPRTLANTLKKSMTSAEQQIKSAKEDLIIENAEITMYDTLLQVAQLMNAG
                     DAIPVLNQNLAEERSMADWIRANTPAMITQLYPEIQSSIVLPEGEEGREVVTEGAVTP
                     ATEDEEEKRMGPTAAEA"
BASE COUNT          437 a          224 c          233 g          303 t
ORIGIN      
        1 tcttgacagc atagctgagg tttactggga caaggagtcc gcttctgata atgctatgcc
       61 tctgtatgtc agatcataac tcactgattc cttatttcag aaactgcgtt gtatctaagt
      121 cggaggaaaa ttttttctca cacatccatt ggatcgccaa aaaaattgta gttagacaat
      181 aagaaatgga ggtcgatcta gttaaatcat atactagtag tttattcttg aaggattaat
      241 acaaatagag tgtcttcttg cattggaatt ggcacgcaac aagagcagta aatcgacaaa
      301 aggcaaaaga caaaagaaaa caagaagagc aagaaatacc agcaggcaaa atgctaaaag
      361 attaacactt ggagagaaac tagcccaata tctcaacgag acactatctt ttgaaaatgc
      421 agcagtatca aggctgcaat caagaataaa agaaccacag ttagaagacg caaagcagca
      481 gctccaacaa catttagagg tgacaagaga gcagcaaaat aggctaaagc aacttatcat
      541 aaatctcgga gcaagaccaa ccaacgattc tggacaacta cctattttaa tacctcctag
      601 aacccttgcc aataccttaa aaaaatcaat gacttctgca gaacagcaaa taaagtcagc
      661 gaaggaagac ctgataatag agaatgcgga aattacaatg tatgatacat tgcttcaagt
      721 ggcacaatta atgaatgctg gagatgctat acctgtatta aatcaaaact tggcagagga
      781 aagatctatg gctgactgga taagggccaa tacccctgca atgataaccc aactttatcc
      841 agaaatacag tcatctattg ttctacccga gggagaagaa ggacgagagg tggttacaga
      901 aggagctgta acacctgcaa cagaagacga agaggagaag agaatgggtc ctaccgcagc
      961 cgaggcttaa atcaagtatt attggcccta tctatacaag aatatctttc ctgaaaaaat
     1021 cccatcaagg gactcaaatc ggcattaatt ttttttgcta tataagatgt gttattactt
     1081 cttaaactta ggtggtaaac attacgatgt tgagctgaaa attactttcc tgtttttttg
     1141 tggtcatcaa gagtcactta ttgctctttt ctaatacatc aaaatctatt aaagcga
//
LOCUS       DATLQL010000022         1149 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_538155, whole genome shotgun sequence.
ACCESSION   DATLQL010000022 DATLQL010000000
VERSION     DATLQL010000022.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1149)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1149)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1149
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_538155"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            404..>1149
                     /locus_tag="VNB68_00205"
     CDS             404..>1149
                     /locus_tag="VNB68_00205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HVD35801.1"
                     /translation="MVVEIGPFLQDFTIIMIVASVMAMVSYKLKQPMVIGYIIAGMII
                     GPFTPPFSLIRNFDVLNLFAEIGVILLLFVVGMEFPIEKLRKIGKRAFVIASSEALGT
                     FTIGFLVSQALNYSLSNSLFLALAISVTSTVIVMRILEELAMIKEEASVIILGVAVIE
                     DIIIISMLAILQSVSTSGQLSGIELVTSVGTVLAFIGGALFIGSKAVPRFVNIIGKTN
                     QHDVLIVGILGVAFGLSFIAFEIGISVATGA"
BASE COUNT          339 a          206 c          241 g          363 t
ORIGIN      
        1 gaagaatccg gcaatgtatt cctcacaata gacgcctcct caatggaacc ctaatggaat
       61 ttcaaatatt ctaaggaccc caagcctgtt gatccgggcc ttgagatata tgatgcaaat
      121 gtaacaactc tggaggattg ctacacagag agacaaatct aatccacgta acttctccaa
      181 atcctccgag ctcaaattag ttaaccgaag tctggtccag aagttctttt ggcctcaata
      241 tttcactcca ttttaattga tgaaagaagg tcatagttgg tctgtattat agtagcgcga
      301 tttagtagtc aagccatcca ttactgaaaa gcattattct gctaaaaatt gtaagacatt
      361 tattaaatgg aatttgtaaa ttcataagga taattgttaa agtatggtag tcgaaattgg
      421 tcccttttta caggatttca cgataattat gatagtcgcg tcggtaatgg caatggtttc
      481 atataaactc aagcaaccca tggtaatagg atatatcatc gctggtatga taataggacc
      541 ttttactcca cctttcagct taatccgtaa ttttgatgtc ctgaatttgt tcgccgagat
      601 aggagttatt ttgcttttgt ttgttgtagg tatggagttt ccaatagaaa aattaagaaa
      661 aattggcaag cgggcatttg tcatagcttc aagcgaggcg ttgggtacat tcaccatagg
      721 attcttggta agtcaagcat tgaattactc gctgtctaac agcctcttct tggcattggc
      781 catttcagta acaagtacgg tgattgtaat gcgcatacta gaagagctag ccatgataaa
      841 agaagaagcg tcggtcataa ttctgggcgt tgccgtaatc gaggacatta taatcatatc
      901 tatgctggcc atattgcagt cagtttctac aagcggtcaa ttgtctggaa tagaactagt
      961 tacttcagtt ggtacagttt tagcatttat cggaggcgct ttattcatag gttcgaaggc
     1021 agtaccaagg tttgtaaata ttattgggaa aaccaaccaa catgatgttc tcatagtggg
     1081 gattcttgga gttgcatttg gtctctcatt tattgcattt gaaattggta tatctgtagc
     1141 cacaggagc
//
LOCUS       DATLQL010000023         1233 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2314972, whole genome shotgun sequence.
ACCESSION   DATLQL010000023 DATLQL010000000
VERSION     DATLQL010000023.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1233)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1233)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1233
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2314972"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..256)
                     /locus_tag="VNB68_00210"
     CDS             complement(<1..256)
                     /locus_tag="VNB68_00210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017682.1"
                     /note="binds directly to 16S rRNA where it nucleates
                     assembly of the head domain of the 30S subunit; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HVD35802.1"
                     /translation="MSSREYNNMLLFNKWDPRKIDINDLGLQRVISLSPSVIPVTFGR
                     HEHQRLRKAEVHLAERLVNKLMRFGKKYAKNTGRMGGKKAR"
     gene            complement(262..699)
                     /locus_tag="VNB68_00215"
     CDS             complement(262..699)
                     /locus_tag="VNB68_00215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018039449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HVD35803.1"
                     /translation="MAKSPLGLFAGRVLKSKRKVLRWSNKYYKRRMLMLDKKANPLEG
                     APQARGIVLEKVGIESKQPNSAVRKCVRVQLIKNGKSITAFLPRDGALNYVDEHDEVM
                     LEGIGGSMGGAMGDIPGVRWQVFKVNEVSLKELVYGRKEKPRR"
     gene            complement(700..>1233)
                     /locus_tag="VNB68_00220"
     CDS             complement(700..>1233)
                     /locus_tag="VNB68_00220"
                     /inference="COORDINATES: protein motif:HMM:TIGR01952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NusA-like transcription termination
                     signal-binding factor"
                     /protein_id="HVD35804.1"
                     /translation="LSFNYVFFCQEIIKRSINMTEKIKLTSDELRLMSLFQNVTAAVA
                     RDCIVDEKMDRVIFIVNKGQMGLAIGKGGATIRQLQNVVARKVELVEFSDDPSEFLSN
                     VLNSDMINEIKIDNRFDGTKQAVVVVDSNKKGVVVGKEGRNAEKARLLAKRYFQISTV
                     MIVSEEQIPNRNNQVEL"
BASE COUNT          316 a          307 c          180 g          430 t
ORIGIN      
        1 ttcgagcttt tttacccccc attctacctg tgttttttgc gtatttcttg ccaaagcgca
       61 taagtttatt taccaatctt tctgctaagt gcacttctgc cttgcgtaat ctctggtgtt
      121 catgtcttcc aaaggttaca ggaatgacac tgggggaaag ggatatgaca cgttgaagtc
      181 caagatcatt tatgtctatt tttctaggat cccatttatt gaacaaaagc atgttattat
      241 attctctact gctcattact actatctcct tggtttttct ttccttccat aaaccaattc
      301 tttgagtgaa acttcattta ccttgaagac ctgccatctg acaccaggga tatcgcccat
      361 cgcaccaccc atagatccac caataccctc caacatgact tcatcgtgct cgtcaacata
      421 gttcaaagct ccgtctcgtg gcaaaaaagc agttatcgat tttccattct ttatcagctg
      481 cactcgtaca cattttctta ctgcagagtt aggttgtttg gattctattc ctactttctc
      541 aagtactatc cccctcgctt gaggagcgcc ttctaacgga ttggctttct tgtccaacat
      601 gagcattcgc cttttgtaat atttgtttga ccacctaagc acctttctct tagacttcaa
      661 aactcttcca gcaaataatc ccaatggtga ttttgccaat tataattcca cctggttgtt
      721 cctgtttgga atttgttcct cgctaactat cataacagtg gatatctgaa aatacctctt
      781 cgccagtaga cgtgcctttt cagcattcct gccctcttta cctacaacaa ctcctttctt
      841 gtttgaatcc accacgacca cagcctgctt agttccatca aatctattat caatctttat
      901 ttcatttatc atatcggaat tcagtacatt acttagaaac tcagaaggat catcggaaaa
      961 ctcaactagt tccacttttc gagcaactac attttggagt tgtcttattg tggcgcctcc
     1021 ttttcctatt gcaagaccca tctgaccttt attaactatg aagataactc gatccatctt
     1081 ctcgtctact atacaatctc ttgctaccgc agccgttaca ttctgaaaca atgacattag
     1141 tctcaattca tctgatgtga gcttaatctt ttcagtcatg tttattgatc tcttaataat
     1201 ttcctgacaa aagaagacat aattgaatga caa
//
LOCUS       DATLQL010000024         3860 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_538810, whole genome shotgun sequence.
ACCESSION   DATLQL010000024 DATLQL010000000
VERSION     DATLQL010000024.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3860)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3860)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3860
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_538810"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(108..656)
                     /locus_tag="VNB68_00225"
     CDS             complement(108..656)
                     /locus_tag="VNB68_00225"
                     /inference="COORDINATES: protein motif:HMM:NF028455.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35805.1"
                     /translation="MQGSASDIFVLDATAFYQGFHLRVSEKCITTDQIINEVSHIRKN
                     ISLMNFLIEGQKISILEPKQESINRVKTIARQIGDSKISGPDISVISLAIDYGGTIVS
                     DDYRVCNLAKVMCVRTWNLASLGIKGIRKWTKVCKECRKQYSSSASSCSICGNSLSVR
                     YRERKFDDGASQKKKSITHIIK"
     gene            complement(637..1461)
                     /locus_tag="VNB68_00230"
     CDS             complement(637..1461)
                     /locus_tag="VNB68_00230"
                     /inference="COORDINATES: protein motif:HMM:NF039482.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+)/NADH kinase"
                     /protein_id="HVD35806.1"
                     /translation="MERQLEIRNVAIVTKFNNPVAIDAGRKIAEYFKTRNVQVFSVNN
                     IDRSDVILVSPEKIRDLDLDLVFAVGGDGTTLRTFRMVPNMTPVFSINIGGTRGILAE
                     VGHSDIGTQLEAIVKDEYFLDSRIRLQAQIEGKILGPALNDVVVTRVNLTRTPTLRIS
                     LLNEHVSQRMDGIIISTPTGSTGHSLSLDGPIIHEQVKCLLIHPVAPVNKMPCLIVEP
                     QDISITSSNDSNVVIDGQEVFDVKAESPITISRYPFDGMFVRLNKRGIQQVARLGF"
     gene            1582..1655
                     /locus_tag="VNB68_00235"
     tRNA            1582..1655
                     /locus_tag="VNB68_00235"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1616..1618,aa:Ile,seq:gat)
     gene            complement(1724..2452)
                     /locus_tag="VNB68_00240"
     CDS             complement(1724..2452)
                     /locus_tag="VNB68_00240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35807.1"
                     /translation="MNIWYLDKSVSQLEFPVNYVQVQQRFLDSLLSGNDTEAKNLVYN
                     LITSDITKEHLLIDVVLPTINIVDNLYNRGRIGESERLSILTFAMDLVAFIRFLPYDA
                     RNKLRAHSLCVAGSEDSIHFAKIASTLMHLSGWDSTFIGNVEQKIDPFFDIDIQRYIL
                     KSYGNRNGLILILIFSFSENTLRFLCNALKSSKARFSGDIRLILFTKEDLYDMALTLG
                     PDFVSSDFGSLIKWVEHEYKKSYE"
     gene            complement(2449..2640)
                     /locus_tag="VNB68_00245"
     CDS             complement(2449..2640)
                     /locus_tag="VNB68_00245"
                     /inference="COORDINATES: protein motif:HMM:NF024804.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HVD35808.1"
                     /translation="MSLYRRYTLEEITRKVYSELSESHAGLSGVELAARTKINRMTLA
                     RYLDLMLAKGLVRKKKLGR"
     gene            3166..>3860
                     /locus_tag="VNB68_00250"
     CDS             3166..>3860
                     /locus_tag="VNB68_00250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004055 - argininosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase domain-containing
                     protein"
                     /protein_id="HVD35809.1"
                     /translation="MIQETSWRNRKFRDLAAITNHSSKAKRRLTTKKYKFSLKLLALA
                     MTKDKVVLAFSGGLDTSVCVKYLQMEHNMDVITTTVDCGQDDDFDAIRRKSELLGAIK
                     HVYVDSRTDFVENYVAKAIRANALYQGKYPLATALARPLIASRTMEVARKEEARYVSH
                     GCTGKGNDQVRLDLALRAIDPKIRIIAPIRDMNLTRDIEIKYANEHNIPVNEETKRYS
                     IDVNLWGRAIEGG"
BASE COUNT         1180 a          767 c          708 g         1205 t
ORIGIN      
        1 atcttaacaa aattgggaat gaggcaaaga tgatatgtga tcctgagaaa gcaataggaa
       61 atcgtgttca tctaaaacta tccaacccaa tatctaattc agaataatca ctttataatg
      121 tgagtaattg actttttctt ctgactcgcg ccatcatcga atttacgttc tctgtatctg
      181 actgatagag aattaccaca gatggaacat gaacttgcac ttgacgaata ttgctttcta
      241 cattctttgc aaactttggt ccattttctt attcctttta ttcccaagct ggccagattc
      301 caggtgcgaa cgcacattac cttagccaag ttgcaaactc tatagtcatc tgacacaatt
      361 gtacctccat agtcaattgc caaagatatt actgatatat caggcccaga aattttggaa
      421 tctcctattt gtcgggcaat ggtcttaact cgattgatag attcttgttt tggttctaga
      481 attgaaattt tttgtccttc tattaagaaa ttcatgagcg aaatattttt tcttatgtga
      541 gaaacctcat taattatctg gtctgtggta atgcactttt cactaactct tagatggaat
      601 ccctgataga aagccgtcgc atccaagaca aaaatgtcag aagccgagcc ttgcaacctg
      661 ctgtatccct cttttgttta gtcggacaaa cattccgtca aatggatatc gtgagattgt
      721 tataggagat tctgccttca catcgaaaac ttcttgtcca tcaatcacta cgttagaatc
      781 gttggaagaa gttatggata tgtcttgagg ttctacgatc aaacatggca tcttattaac
      841 tggggcgaca ggatggatca gcaaacattt tacctgttca tgaattatgg gtccatccaa
      901 tgagagtgag tgtcctgttg aacctgtggg tgtagaaata attataccgt ccattctttg
      961 ggaaacatgt tcgtttaaaa gacttattct gagtgtcggg gttcgcgtta aattcactct
     1021 agtgactact acatcattca atgcaggacc aagtatcttt ccttcgattt gagcttgcag
     1081 ccttatccta gaatcaagaa agtactcatc tttaacaata gcctctaatt gggtgccgat
     1141 atcagaatgt ccaacttctg ccaaaattcc tcttgtacca ccaatattaa tgctgaaaac
     1201 aggcgtcata tttgggacca ttctaaatgt ccgcagagtt gttccgtctc ctccaactgc
     1261 gaagactaaa tccaaatcga gatccctaat tttttctgga gaaaccaaaa ttacatcaga
     1321 acgatcgata ttgtttactg agaaaacctg cacattcctt gtcttgaagt actccgcaat
     1381 ttttctacct gcatctatgg ctacaggatt attaaatttt gtaactatag ccacgttacg
     1441 gatttccaat tgtctttcca accttcactc ccatttgtga ctcttaaatg cattgttgtg
     1501 ctaagatggc aaattcggaa ttgctgaaat tcattcgaaa tatccacaag aataaataac
     1561 gacaataaaa atgattttgg tgggccgata gctcagcttg gtggagcgtt cgactgataa
     1621 tcgaaaggtc aagggtccaa atccctttcg gcccactata cattatgacc tatctcgatt
     1681 gcgagatttt tctcaacttt gaccacgttc gattcatttg aaactactcg taagacttct
     1741 tatattcatg ttctacccac ttgataagag acccaaaatc tgagcttaca aaatcaggcc
     1801 ctagtgtcag agccatatca tatagatctt ccttagtaaa aagaattaat ctaatatcac
     1861 ctgaaaatct agctttcgaa cttttcaagg cattgcaaag aaatcgtagg gtgttctctg
     1921 agaacgagaa aatcagaatc agaattaggc catttctgtt tccatatgat ttcaaaatgt
     1981 atctttgtat atctatgtca aagaaaggat ctattttttg ctcgacattt ccgatgaaag
     2041 ttgaatccca accagaaagg tgcattaaag tagaggcgat tttcgcaaaa tgaattgaat
     2101 cttcagatcc tgccacacat aaagaatgcg cccttaattt gtttcgagca tcatacggaa
     2161 ggaatctgat gaatgccaca agatccatgg cgaaggtaag aatagaaagc ctctcgcttt
     2221 ccccaatccg ccctctgtta tagagattgt cgacaatatt tatagttggt aatacgacat
     2281 cgattaatag gtgctccttt gttatatcag aagttataag attgtagaca agattctttg
     2341 cttctgtatc attaccagaa agtaaagaat ctagaaacct ctgctgaact tgaacgtaat
     2401 tgacgggaaa ttcgagttga gagacgcttt tgtctaaata ccatatattc aacgccccaa
     2461 tttttttttt ctaacaagtc ctttggccag catcaaatcc aaatatcttg ccaacgtcat
     2521 tctatttatc ttggttctag ctgccaactc tacaccagaa agcccagcat gactttcaga
     2581 gagctctgaa tatactttcc ttgttatctc ttctaaagta tatcttctgt acaatgacat
     2641 ataaaatatc agttattctg ttttttaatg gtttcctttg aatgatttgc caaaaagcca
     2701 agtcaaacgg atcgactgga tagttatctt caaaatgaca ggtgagtttg tgtgagcttt
     2761 tgagtattct gttcgtaaaa aaacttgttt atttatattc ggcgattatc ttttactgat
     2821 tttgttttaa attcatcaat gaccaattag cttattgtgg ctccgcccta cttcattaca
     2881 acaaattaca tcctttagat gcgatacaga actttagcga atttttgcga agcacaacac
     2941 ttggtaatgt ataacctctc aaatatgagt ttccttatat ggtaactttg aagtgtgaaa
     3001 caaatcagga ttctaacgta aaccggatca gatcgtctat acaaagcgga tccgtcttga
     3061 ttagtcttat ctgctaacaa aatgaagtga ttattatcct gttggatatt accatccatg
     3121 attcaacgtt gccatttaga agataccaac aggacccaga ttggaatgat tcaggaaaca
     3181 agctggcgaa atcgcaagtt tcgtgaccta gccgctatta ctaatcattc gagcaaagcc
     3241 aaacgacgtc taacaaccaa aaaatataaa tttagtttga aattgcttgc attagccatg
     3301 acgaaagaca aggtggttct ggctttttct ggaggtctcg atacatcagt ttgcgtcaag
     3361 tatcttcaga tggagcataa catggatgtt atcacaacaa cggttgattg cggacaggat
     3421 gatgattttg atgcaatacg tcgaaaatct gaattattag gtgctataaa acatgtgtat
     3481 gttgactcta gaactgattt tgttgaaaat tatgtggcta aagctattag agccaatgcc
     3541 ctatatcaag gaaagtatcc tcttgccact gccttagctc gtcccctcat tgcatccaga
     3601 acaatggaag tcgcacgcaa agaagaggct agatatgttt cacatggctg tactgggaaa
     3661 gggaacgatc aggtgaggtt ggaccttgca ctacgtgcaa ttgatcccaa aattaggatc
     3721 atcgccccga taagagatat gaatttgacc agagatattg aaatcaaata tgccaacgaa
     3781 cacaacatac ccgttaatga ggaaactaaa cggtatagca ttgacgtaaa cttgtggggt
     3841 agagctattg agggcggaca
//
LOCUS       DATLQL010000025         1762 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1249317, whole genome shotgun sequence.
ACCESSION   DATLQL010000025 DATLQL010000000
VERSION     DATLQL010000025.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1762)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1762)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1762
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1249317"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..533)
                     /locus_tag="VNB68_00255"
     CDS             complement(<1..533)
                     /locus_tag="VNB68_00255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiA family prenyltransferase"
                     /protein_id="HVD35810.1"
                     /translation="MGFLISQAKVGSILKNYYELTKPKIWYLLVFTAFASALTGSLLF
                     DIEVQPLTWVLLIGGVAAGSAAADALTGYNDRDIDAIMDRTKARPIPSGRISPRNALI
                     FGLVLAAISLVFSWFINIWAFFLMVFGLFDNIVVYSVWLKRKSQLNIILGGFSGGAPA
                     LIGYVAVTTQHIELGLV"
     gene            complement(594..1058)
                     /locus_tag="VNB68_00260"
     CDS             complement(594..1058)
                     /locus_tag="VNB68_00260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HVD35811.1"
                     /translation="MGRIDDLDLKILSELAQDASISVPKLSKKISVNASVVYSRIKRL
                     VKRGLIKKFTIVINDEALGFGVKALTGINMDSKLRDNVLNELFKIPEVREVAEVTGRF
                     DILVTMTSRSLDEMHQLISEKVGRIEGVQRTETFIEMRKTLREILYPASIAK"
     gene            complement(1149..>1762)
                     /locus_tag="VNB68_00265"
     CDS             complement(1149..>1762)
                     /locus_tag="VNB68_00265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="Asd/ArgC dimerization domain-containing protein"
                     /protein_id="HVD35812.1"
                     /translation="TTTGLAISLKPIIDKFGIDIVFMTSMQALSGAGRSPGVVALDIM
                     DNVIPYIPKEEEKVQVETKKILGHLNSNSIVSSEIKISCTCTRVPVLDGHTESVFVKT
                     RKPTTPEKVKSEMLKFSEAVAMDELPTAPKEYIMVHDDPTRPQPRLDREVNDGMTTVI
                     GRIRKDTAFENGIKYILFSHNEKMGSAKGAVLLAELFKHKAIL"
BASE COUNT          530 a          375 c          308 g          549 t
ORIGIN      
        1 ataactagac caagttcaat atgctgagtt gtaactgcaa cataacctat taacgcagga
       61 gctcctccag aaaatccacc taatatgatg tttagctggc tttttcgctt caaccacaca
      121 ctgtagacca caatattgtc aaataatcca aaaaccataa gaaagaaagc ccatatattg
      181 atgaaccatg aaaataccaa agaaattgca gccagtacaa gtccgaatat gagtgcgttt
      241 ctcggggaaa ttcgccctga cgggatgggc cttgccttgg ttctgtccat tatcgcgtct
      301 atatcgcggt cgttataacc cgtcaaagca tcagcagcgg ctgacccagc agctactcct
      361 ccaattaata atacccacgt taatggttga acttcaatat caaataacaa agatcccgtc
      421 agtgctgaag caaatgcagt aaaaactaag agataccaga tcttaggttt ggtaagctca
      481 taatagtttt ttagaatact gccaaccttc gcctgagaaa tgaggaatcc cataacaact
      541 attttctcca gatctcttat aaaagccgta tacctaagaa ttatgctctt gcatcatttg
      601 gctatagagg caggatagag aatttcacga agggtttttc tcatctcaat aaaagtttct
      661 gtcctttgaa ctccttcaat acgacctacc ttttctgata tcaattgatg catctcatcc
      721 agcgaacggg aagtcatagt aaccaaaatg tcaaatctgc cagtaacttc agcaacctct
      781 ctaacctcgg gtatcttgaa taattcgttg aggacattat ctcttagctt agaatccata
      841 ttaatgccag tgagcgcttt aacaccgaat cctaaagcct cgtcattgat tacgatagta
      901 aactttttaa ttagacctct ttttacaagt ctttttattc tactgtatac aactgaagca
      961 ttaacgctaa ttttcttaga aagcttggga acggagatac ttgcatcctg ggcaagctcg
     1021 cttaaaatct tgagatctaa atcgtcaatt cttcccatat ggttttcaga ttatatcttt
     1081 agttaagttg ttaataaatg tattaatttc aaatttaaac gtattttttt aataataata
     1141 actggatatc agagtatagc cttatgttta aataattcag cgagcaagac cgccccttta
     1201 gcagagccca tcttttcatt gtgggaaaat aatatgtatt ttatgccgtt ttcaaaagcc
     1261 gtgtcttttc tgattctgcc aataactgta gtcattccat catttacctc cctatctagc
     1321 cgaggctgag gccttgtcgg atcatcatgc accatgatat actctttggg agcggtaggc
     1381 aactcatcca tggcaacagc ctctgagaac ttcagcattt cggatttaac cttctctgga
     1441 gttgtgggtt ttctagtctt gacaaatact gattcagtat gtccgtctaa aactggaacc
     1501 cttgtacatg tacagcttat cttgatttct gaggatacga ttgagttaga atttaggtga
     1561 cctagaattt tttttgtttc gacctgaact ttttcttcct ccttaggtat gtaagggatc
     1621 acattatcca tgatatcgag agcaacaacg ccaggagatc ttccagctcc agataatgct
     1681 tgcatagaag tcatgaacac aatgtctatc ccaaatttat ctatgatagg tttgagagat
     1741 atagccaaac ctgtagtggt ac
//
LOCUS       DATLQL010000026         1063 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2137616, whole genome shotgun sequence.
ACCESSION   DATLQL010000026 DATLQL010000000
VERSION     DATLQL010000026.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1063)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1063)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1063
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2137616"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            247..>1063
                     /locus_tag="VNB68_00270"
     CDS             247..>1063
                     /locus_tag="VNB68_00270"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HVD35813.1"
                     /translation="MPVVADRMEFKNLVAPVALLFILSLGFGNMQAFGQPMTKDANLR
                     IESTVQGLSFPTSMLFLDADHILVLEKEGNVRLVSSGVLQPSPVLSLPAVNKNERGLL
                     GIEKIGENVFLYITESDGGAKNRVYRYDISGSSLTNQKLLLDLPAGPGTNHQGGKLVS
                     GKDNSLYSVTGELQRNGKDQNIKDGPDPDFSGAILRVNPENGSPAQNNPFPTSNSSSD
                     LLGHYYAYGIRNSFGLAIDPVSGSLWDTENGEDVYDEINLVTPGFNSGWKLVMG"
BASE COUNT          324 a          184 c          246 g          309 t
ORIGIN      
        1 caagatcagg agacttcctg taattttcga tggcaaggtt atcggaataa tcactgtgac
       61 tgatttggca aaacacctca gaacaatcct gttgatcgaa ggaattcttt ccgatgaaaa
      121 ttaaagtcat cttgtttctt attaagagaa tcatttgata ttctactaat gggatctatt
      181 ctttgtaaat tcgaacagaa tagaattgtt tagccacgtt aagatccaaa agtataaaag
      241 cattccatgc ccgttgtagc tgataggatg gagtttaaaa atcttgtagc cccagtggca
      301 ctgttgttta tcctaagttt ggggtttgga aacatgcagg ctttcggtca gcccatgaca
      361 aaggatgcta atttgagaat agaatcgaca gtacaaggat tatcatttcc tactagcatg
      421 ttgtttctgg atgcggatca tattttagtt ttggaaaaag aagggaatgt tcgacttgtc
      481 tctagtggtg ttttacaacc aagccctgtc ctttctttgc ctgcagtaaa taagaatgag
      541 agaggactgt tgggcatcga aaagattgga gagaatgtgt ttttgtacat tacagaatct
      601 gatggtggcg cgaagaatag agtatacaga tacgacataa gtggatcttc tttaacaaat
      661 cagaagttgc ttctggatct tcctgccgga cctggaacta atcatcaagg aggaaaatta
      721 gtttcgggaa aagacaattc actttattct gtcacgggcg aactacaacg aaatggcaag
      781 gaccagaata ttaaagacgg gccagatcct gatttcagtg gtgcaattct tagagtaaat
      841 ccggaaaatg gcagccctgc acagaacaat cctttcccta caagtaattc atcatcagat
      901 ctgctgggtc attactatgc gtatggcatc agaaatagtt ttggactcgc gatagaccct
      961 gtgagtggtt cattatggga cacggaaaat ggcgaagatg tatatgatga gatcaatcta
     1021 gtgacgccag gattcaacag tggttggaaa ctggtgatgg gtc
//
LOCUS       DATLQL010000027         1247 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1960498, whole genome shotgun sequence.
ACCESSION   DATLQL010000027 DATLQL010000000
VERSION     DATLQL010000027.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1247)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1247)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1247
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1960498"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..920)
                     /locus_tag="VNB68_00275"
     CDS             complement(<1..920)
                     /locus_tag="VNB68_00275"
                     /inference="COORDINATES: protein motif:HMM:NF012706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HVD35814.1"
                     /translation="MTSFDIRAQNEKKGAFVDGARFIQYLDDNVALQEIKAGNLDTYY
                     FRVPLEVVPDIKNNPNLKEYDRNAGTFGVLLNPAPSKTADSVNPFQFKKIRFAVNYLI
                     NRDFVVNEILKGFGTPIVDPFGVYSPEYLNVLDTIESFGFRYNPHFANKMISDALTNA
                     GAVNRAGKWTFNNKPIIIKMLIRNDDPQRRSVGELIASEFEKVGFVVQRDFGDLNKAN
                     SIVYGSDPQDFQWHVYTEAYAGTSAFVKYNPVITSQMYAPYFGRMPGGTNPSFWHYQN
                     VTLDKITQRIAFFNFTSQHERNELVKNATKA"
     gene            complement(1018..>1247)
                     /locus_tag="VNB68_00280"
     CDS             complement(1018..>1247)
                     /locus_tag="VNB68_00280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35815.1"
                     /translation="AVSSPASIFCEVSEVLETNDQTNVRNIASDLARSRYSAMEGIDI
                     TKYLSSRYLNHSFATKTPQKEKNNIFTNYDP"
BASE COUNT          358 a          242 c          255 g          392 t
ORIGIN      
        1 gctttggttg cattcttaac aagctcattt ctttcatgtt gagaggtaaa gttaaagaag
       61 gcaatacgtt gcgtaatttt gtcgagcgtc acattctgat aatgccagaa actggggtta
      121 gtcccaccag gcatgcgacc gaaataaggc gcatacatct gtgaagtaat tacagggttg
      181 tactttacaa atgcggaagt ccctgcataa gcttcagtat atacatgcca ttggaaatct
      241 tggggatcag aaccataaac tattgaattg gctttattca aatctccaaa atcacgctga
      301 actacaaatc cgactttttc gaactcggat gctatcagtt ctccaactga acgtctttga
      361 gggtcgtcat ttctgattaa catctttatg attatcggct tattgttgaa tgtccatttt
      421 cctgcgcgat taaccgcacc agcattcgta agagcgtcag aaatcatctt attcgcaaaa
      481 tgaggattgt atcggaaccc aaatgattca attgtgtcta aaacattcag atactctggt
      541 gaatagacgc caaacggatc aactattggt gtaccaaagc ccttcaatat ttcatttaca
      601 acaaaatcac ggtttatcag gtaatttaca gcaaagcgaa tcttcttaaa ttgaaatggg
      661 ttaactgagt cggcagtttt ggaaggtgcc gggtttaaca ggacaccgaa ggttcctgcg
      721 tttctgtcat attctttgag gtttggatta tttttaatgt cgggaacaac ctctaatggt
      781 accctgaaat aataggtatc taagttacct gcctttattt cttggagtgc tacgttgtcg
      841 tccaagtatt ggatgaacct cgcgccgtca acgaaggcac ctttcttttc attctgtgca
      901 cgaatgtcaa aggaggtcat aaagagaaaa atagttaata tggcaaagat agcgtatcct
      961 gccaagaaca ttagcttata ccgaagcgta gttctttttc caccttataa gaaaggatta
     1021 gggatcataa tttgtgaaga tattgttttt ttctttttga ggcgtttttg tcgcaaatga
     1081 gtgatttaaa tacctacttg ataggtactt tgtgatatct atcccctcca tggcactata
     1141 tctgctacga gctaggtcgg acgcgatatt tcgaacattt gtctgatcgt tagtctctag
     1201 gacttccgaa acttcacaaa agatactagc aggtgaagat acggctt
//
LOCUS       DATLQL010000028         1252 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_362736, whole genome shotgun sequence.
ACCESSION   DATLQL010000028 DATLQL010000000
VERSION     DATLQL010000028.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1252)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1252)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1252
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_362736"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..585
                     /locus_tag="VNB68_00285"
     CDS             <1..585
                     /locus_tag="VNB68_00285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HVD35816.1"
                     /translation="PVPDSARPAALGYAQQLGLPFEEGLLKDIYRKKGLMRSFIEPYQ
                     EDRLEINKGIIPIRDVIEGKNVVIVDDSIVRGTSSASIVKTLRSARAKQINMIVTYPP
                     IRYPCYAGIDFPSQSELLAYQQAKGEISKVDLEAKVARVIGADFVAYNNTFNLADAIG
                     LPEEELCFTCTTGDYSSLGIKPIFKTREEMKGDE"
     gene            740..1132
                     /locus_tag="VNB68_00290"
     CDS             740..1132
                     /locus_tag="VNB68_00290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35817.1"
                     /translation="MIYETIFMRIMIIMLAVTVIFTVTLITILLISIIPTKDYSVDVD
                     AIKDEQSLFVNARITLTNTGRQPLTDVVVNYGNRNEFIKMINPGEKIYLSPPEGSRLD
                     IVEVTAKEGIKVAKEYRKPIKLPGMIGS"
BASE COUNT          393 a          232 c          242 g          385 t
ORIGIN      
        1 ccagtacctg attctgcacg gccagctgcg ttgggatacg ctcagcaatt aggtctacct
       61 tttgaggaag gtctactcaa agatatatac agaaaaaagg gactaatgag aagtttcata
      121 gaaccatacc aggaagatag attggaaatc aacaagggca tcatacctat ccgtgatgta
      181 attgaaggaa aaaacgtggt tattgttgac gatagtattg tcaggggaac aagctctgct
      241 tctattgtaa agacattacg ttctgctaga gcaaagcaaa taaacatgat cgtcacttat
      301 cctcccatac gctatccatg ttatgcgggc attgactttc cttcacaaag tgagctttta
      361 gcttatcaac aggcaaaagg tgaaatctct aaggtcgatc ttgaagctaa agttgcgaga
      421 gtcattggtg ctgattttgt agcctataat aatactttta acttggcaga tgcaattgga
      481 ctgccggaag aggagctctg ttttacctgt acaacaggtg attactcctc tcttggcata
      541 aaaccaattt tcaagacaag agaagagatg aaaggcgatg aataataata ttataggtaa
      601 taattacgat accaaaaacc tctcgttaat gttctttgtt tattttcatc cagattactc
      661 tattttaaaa aagcaacgat taatgtagag attgctcctc ttgcttctaa cgtattaaac
      721 aagggctaac ttaataatat tgatttatga gactatattc atgcgcatta tgataataat
      781 gttagctgtt actgttatct ttactgtgac actcataacc attctgctaa tttctatcat
      841 tcctactaaa gattattctg tcgatgtgga tgcaatcaag gatgaacaat ctttgtttgt
      901 aaatgcaaga attactctaa cgaatacagg aagacagcca ttaacagatg ttgtggtcaa
      961 ttatggcaac cgaaatgagt tcatcaaaat gataaatcct ggagaaaaaa tttatctatc
     1021 tccgcccgaa ggcagccgct tagacattgt cgaggttacc gctaaggaag gcatcaaggt
     1081 ggcgaaagaa tatagaaagc ctattaagct tcctggcatg ataggctcat gaatttttat
     1141 cgttgatctt cgattttagg atactacttt tttgtgtcac cctgtgatct ctctgctagg
     1201 tatttctcaa atccgatcct ttccagcttc tctgcgtgac gaattacact at
//
LOCUS       DATLQL010000029         1331 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_363088, whole genome shotgun sequence.
ACCESSION   DATLQL010000029 DATLQL010000000
VERSION     DATLQL010000029.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1331)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1331)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1331
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_363088"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            367..>1331
                     /gene="ilvC"
                     /locus_tag="VNB68_00295"
     CDS             367..>1331
                     /gene="ilvC"
                     /locus_tag="VNB68_00295"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HVD35818.1"
                     /translation="MPAKKWFDNDVTLDLLKSKTVAVVGYGIQGRAQANNMKDSGLDV
                     IVGLRKEGKTWDLAEKDGHIVKEVADASNSANIIHILVPDMEQALVYTNNIAPKLSRG
                     KTLSFSHGASIHWNWIDPPKDVDVIMVAPKGPGQRVRELFQEGFGTPSLVAINQNYTG
                     KALDIVLGIAKAIGSTRPGVIETTFKEEVETDWFGEQVDLCGGTHSLVLNAFETLVEA
                     GYQPEVAYYECLHELKLIVDLIHKYGISGMYNRVSETARYGGLTRGPRIINSDVKKNM
                     KKVLEDIQSGEFANEWLSDYKKNGKNSFEKFMKELENHQIETVGT"
BASE COUNT          454 a          191 c          314 g          372 t
ORIGIN      
        1 ttgtcctcag cattgcataa gatagtattc tgctcctaat ttaattagta acagaaggta
       61 tgtaaaaatg acatgaaaaa tcgaattatt tgtaggtgtg gataattgag tagtcctcaa
      121 cgatcatgtc caatttgtac aagatgtgga tataaaaaat tctacagtat tgacaaatct
      181 aatgacagat gtctagtgaa atgtaagaaa tgttttttca taatgaaaat ttgacatcat
      241 tgtcttcgtt gaacaaactg aattgtgttt gatttcaaat caggtaccaa agaattgaga
      301 taatatgtgg ggtgggatgc tccaacacta atagggcata tatagagtat cattacacca
      361 aaacatgtgc cagctaaaaa gtggtttgat aatgatgtca ctttggattt gttaaagagt
      421 aagactgtcg cagttgtagg gtatggaatt caaggtagag ctcaagcgaa taatatgaaa
      481 gattcaggat tggatgttat tgtgggcctc cgaaaagaag gtaaaacgtg ggatttggct
      541 gaaaaagatg gacatatagt taaggaagtg gctgacgctt ccaattcggc aaatattatc
      601 catatattgg tcccggatat ggaacaagca ttagtttata cgaataatat tgctccgaaa
      661 ttgtctcgtg gcaagacatt gagtttttcg catggagcgt ctattcattg gaactggatc
      721 gatccaccta aggacgtaga tgttataatg gttgcaccta aagggccagg acaaagggtc
      781 agggaacttt ttcaggaagg atttggaaca ccgtctcttg ttgctataaa ccagaattat
      841 actggtaaag cgttagatat tgtcttgggt attgccaagg caataggcag tactaggcca
      901 ggggttatag aaacaacatt caaagaagaa gtagaaacag attggtttgg tgagcaagta
      961 gacttgtgtg gagggacaca ttcgcttgta ttaaacgcgt ttgagacgct agttgaagca
     1021 ggataccaac ccgaagtagc ttactacgag tgcttgcatg aacttaagct catagtagac
     1081 ttgatacaca agtacggaat ctccggaatg tataatcgag ttagtgaaac cgcaagatat
     1141 ggaggtctaa ctcggggacc cagaatcata aattcggatg taaagaaaaa catgaagaaa
     1201 gtacttgagg atattcagtc cggggaattt gctaatgaat ggttaagtga ttacaagaag
     1261 aatggtaaaa attctttcga aaaattcatg aaggaactag agaatcatca gatagaaaca
     1321 gtaggtactg a
//
LOCUS       DATLQL010000030         1203 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_717694, whole genome shotgun sequence.
ACCESSION   DATLQL010000030 DATLQL010000000
VERSION     DATLQL010000030.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1203)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1203)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1203
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_717694"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..263
                     /locus_tag="VNB68_00300"
     CDS             <1..263
                     /locus_tag="VNB68_00300"
                     /inference="COORDINATES: protein motif:HMM:NF018201.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35819.1"
                     /translation="GFIPSVTEPFCNQCDRIRLTSDGRFLTCLFESPGYDIKSYLRRG
                     ASDEELSQCLIHCMTMKQEGIVSLIRINGLKPKLNLMHTIGG"
     gene            271..540
                     /locus_tag="VNB68_00305"
     CDS             271..540
                     /locus_tag="VNB68_00305"
                     /inference="COORDINATES: protein motif:HMM:NF014636.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HVD35820.1"
                     /translation="MRSNVSDNDKIKVRLFAILREVVGEREITITVPSGVTVSYLNNE
                     ILKKYPQLNSFSNKFVTSVNCKVTTGDTIITSKDEIALLPPVSGG"
     gene            503..961
                     /locus_tag="VNB68_00310"
     CDS             503..961
                     /locus_tag="VNB68_00310"
                     /inference="COORDINATES: protein motif:HMM:NF014448.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HVD35821.1"
                     /translation="MKLLFCHQSAGVESLISITNKHLSLQEVMRELEDNSAGALSIFM
                     GNVRNRGRFGNVSEIYYEAYSEMAEEKMREIENEAQTKWGIKKLVAIHRIGNLKVGET
                     SIIIGVSSEHRHEAFEACKYIINNVKTRVPIWKKEISEESQKWVDGILLE"
     gene            954..>1203
                     /locus_tag="VNB68_00315"
     CDS             954..>1203
                     /locus_tag="VNB68_00315"
                     /inference="COORDINATES: protein motif:HMM:NF014070.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HVD35822.1"
                     /translation="MSKEKKNDKKRRGMFDVGTKPDSHRTAQAKAVLSIDAKTAVLIR
                     QGKSPKGDIVEAAKIAATSGAKKTSDIIPYCHPIPIDQI"
BASE COUNT          422 a          195 c          278 g          308 t
ORIGIN      
        1 tcggatttat tccctctgta acagagccct tctgcaatca gtgtgatagg ataagattga
       61 cttctgatgg gagatttctt acatgtctat ttgaaagccc tggctacgac atcaagagtt
      121 atctgcgcag aggagcatca gatgaggagc ttagccaatg cttgattcac tgtatgacta
      181 tgaaacagga agggatagtg agcttgataa gaattaatgg tcttaagcca aaactaaacc
      241 tcatgcatac gattggtgga taagctcaat atgagatcga atgtctctga taacgacaaa
      301 ataaaagtca gattatttgc aatattgaga gaagtggtgg gtgaaaggga aataacaata
      361 actgtaccta gtggcgtcac agtgagctac ttaaataatg aaatattaaa gaaatatcca
      421 cagcttaact cgtttagtaa caaatttgta acttctgtaa attgtaaggt tactactggc
      481 gataccatta ttacttccaa ggatgaaatt gctcttttgc caccagtcag cgggggttga
      541 atccttgatt agtattacca acaaacatct aagtttgcaa gaggtaatgc gtgaactaga
      601 ggacaattct gcaggtgcat tatccatctt catggggaat gtccgtaatc gaggcaggtt
      661 tggtaacgtt tcggaaatct attacgaggc ttacagtgag atggcagaag aaaaaatgag
      721 agaaattgaa aatgaagcac aaacaaaatg gggaataaaa aaattagttg caattcatag
      781 gatcggcaat ttaaaagtcg gtgagaccag tattataatt ggggtatctt ctgagcatag
      841 gcacgaagct tttgaggcat gcaaatatat cattaataat gtgaaaactc gggtacccat
      901 atggaaaaag gaaatatctg aagaaagtca gaaatgggtt gatgggatcc tacttgagta
      961 aagaaaaaaa gaatgataaa aagcgcaggg gcatgtttga tgttggtact aagccagatt
     1021 cccacagaac cgcacaagca aaggcggtat tgagcataga cgccaaaacg gcagtattga
     1081 ttagacaagg aaagtctccc aagggggata ttgtggaggc agcgaagata gcagctacgt
     1141 cgggcgctaa aaaaacatca gacattatac catactgtca tccaatacct atagatcaaa
     1201 tta
//
LOCUS       DATLQL010000031         1351 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2138163, whole genome shotgun sequence.
ACCESSION   DATLQL010000031 DATLQL010000000
VERSION     DATLQL010000031.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1351)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1351)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1351
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2138163"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..295
                     /locus_tag="VNB68_00320"
     CDS             <1..295
                     /locus_tag="VNB68_00320"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HVD35823.1"
                     /translation="VPFARGFSYPSNHVASITALAYIAWFELNRKFGRSAMFIWALPM
                     IISVSRLYLMQHHFTDVVAGFFLGLIISVILSNLMHLDQPFLMSRFHGNDSVA"
     gene            488..961
                     /locus_tag="VNB68_00325"
     CDS             488..961
                     /locus_tag="VNB68_00325"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HVD35824.1"
                     /translation="MDDYIIRRCERDDLAAVVDINLLTLPEHYSDYFFEAILRELPES
                     FIVAELEKKIVGYIMCKVEFGFSNFRKLGFVKKGHVVSVAVLEEHRNKGLGMALMVES
                     TNGIMNRKSDEMYLEVRVSNKSAIGMYQKLGFQIKSKLHAYYRDGEDAYLMCLEF"
BASE COUNT          395 a          234 c          291 g          431 t
ORIGIN      
        1 tgtgccgttc gcacgtggtt tctcctatcc atcaaatcat gttgcgagca tcaccgctct
       61 agcatacata gcttggttcg aactaaatcg aaagtttggt aggtcagcta tgttcatttg
      121 ggccttacca atgattattt ccgtatccag attgtacctg atgcaacacc attttacgga
      181 tgtggtagca ggattctttc ttggattaat tatttcagtg atcttaagca atctaatgca
      241 tctagaccag ccttttttaa tgtccagatt tcatggaaat gactcggttg cgtgatccta
      301 tcaaactagg cagtcctatg ctctgccaga tcgtctacct agcattgtag aagctctaca
      361 caaaagtgga ttgagagcag aagcgcttga atctaaattg gacggttaat atttttcatg
      421 atgacctgat aaagtatata atttggcgtg ccataattta attaacttgc aaagtgctct
      481 gcggacgttg gacgattaca ttattcgtcg atgcgagcgg gatgaccttg ctgcagtagt
      541 ggatataaat ttgcttactc ttccagaaca ctattctgat tacttttttg aagcaatact
      601 aagggaattg ccagaatctt ttattgtcgc tgagctggaa aagaaaatcg taggttatat
      661 catgtgtaag gtagagtttg gattttctaa tttcaggaaa ttaggatttg tgaaaaaggg
      721 tcacgtggtt tctgttgccg tcctggaaga acaccgcaat aagggtttag gcatggctct
      781 aatggttgag agtaccaatg gcatcatgaa tcgaaaaagt gacgaaatgt acttggaggt
      841 cagggtgagc aataaatcag ctatcggtat gtatcaaaag cttggttttc agataaaatc
      901 taaattacat gcttattata gagatggaga ggatgcttat ttgatgtgtt tagaatttta
      961 gaattgaaac cttacggata aagattagac gattggatag atagatccat gaagtacatg
     1021 cttccagata acagaaattc caatgcgact ttacattata ctttttggtt tacttgcatc
     1081 tgtagctgat tgaatgttct acctagagac tcatggattt gtgctaacaa gagttttgaa
     1141 atcaaaggtg attagcgata tcagactggc aatctaaaat cctgatttta taggatcttc
     1201 cggtttcatt agctcacgta gcaaagtcgt ggcataggaa cccttaggaa gtttaaaaaa
     1261 tagagaaagt gagccttgat gcataaatcc tgagcaccct aatttgcttt gtctaaatcc
     1321 accaggagaa cttagctcgt ccatttcctt t
//
LOCUS       DATLQL010000032         1655 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_6730, whole genome shotgun sequence.
ACCESSION   DATLQL010000032 DATLQL010000000
VERSION     DATLQL010000032.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1655)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1655)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1655
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6730"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1145)
                     /locus_tag="VNB68_00330"
     CDS             complement(<1..1145)
                     /locus_tag="VNB68_00330"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HVD35825.1"
                     /translation="MNSTSITNEYPHFVLQDYHSHHAKALSSKYPEVGLPSPKGPTIL
                     DPNLKAKVVFRGLGYPTSMAFLGPNDMLVTEKDAGTVRRIVNSTELPQPLLEVNVATL
                     AHRGLLGIAIVPHATAVVALSDHGTANGHNNDNNIIAYVFLYYTQAQTRTGDNIIEGT
                     QPLGNRLYRYELINDNKLVNPKLLLDLPATPGAIGIGGKVIVGPDNNLYVTVGDVGID
                     GHSTKAQNILNGSEPDGTSGILRVNQDGQPALPGILGNKFPLNLYYSYGMWNSFGLAF
                     DPITRILWDTQIGLPFGDEINRVDPGFNSGYKKIDGLWLRGYNIDQTEKQHIASLHPN
                     DLVNFGGKGKYHPPQFTWFRKVVPAGITFLNSNRIGNLYKNDMFVADV"
BASE COUNT          508 a          319 c          318 g          510 t
ORIGIN      
        1 acatcggcaa caaacatatc atttttgtat agatttccta tcctgttaga attgaggaat
       61 gtgattccag ccggaaccac tttccgaaac caagtaaact gagggggatg gtattttcct
      121 ttcccaccaa aattgactaa atcatttgga tgaagagagg caatatgctg cttctcagtt
      181 tgatctatat tatagccacg taaccataag ccatcaatct ttttgtagcc gctgttgaat
      241 cctgggtcaa cccgattgat ttcatcacca aatggtaaac caatttgcgt atcccataga
      301 attcttgtta tagggtcaaa agcaagtcca aagctattcc acattccata ggaatagtaa
      361 aggtttaatg gaaatttatt tcccaagata ccgggcagtg ctggctgacc atcttgatta
      421 actctgagta tcccacttgt tccatccggc tcacttccat tcaggatatt ttgtgcttta
      481 gtgctatgtc cgtcgatgcc aacatcacca acagtaacat agagattatt atcaggtccg
      541 acaatcacct taccgccaat acctatagct cctggagttg ctgggagatc taacaacaat
      601 tttggattta ctaacttgtt gtcgttgatc aattcatatc tatataggcg gttacccagt
      661 ggttgtgttc cctctataat attatcacca gtacgagtct gagcttgagt atagtatagg
      721 aaaacgtatg cgataatatt attatcatta ttatgaccat tagcagttcc atggtcagat
      781 agagcgacaa cggcagtagc gtgaggaacg atggcaattc ctaacaaacc tctatgagct
      841 aatgtagcaa cgttaacctc aagcaaaggt tgcggtaatt cagtactgtt aacaattctt
      901 cgtactgtgc ctgcatcttt ctctgtgact aacatatcat taggacctaa aaaggccata
      961 ctggtagggt atcctaatcc tctgaaaact acttttgcct tcagattagg atcaagtatc
     1021 gttggtcctt taggagaagg aagaccgact tctggatatt ttgaagataa ggctttagca
     1081 tgatgactat gataatcttg tagtacgaag tgtggatatt cgtttgttat ggaggtagaa
     1141 ttcaaggtta agattgcaac caaaattata cttactaagc aagatgatga cagtaacata
     1201 gaatgaggtt ttagaaactt cattgaagaa cttgttgaag atacggaggt ggtttcctat
     1261 atctatttgg tcgtaattag catcgagaaa attcctttca atatctatcg caccttttct
     1321 gttattattg agccttagtc atagtcaaaa tcgcggatat ttacgaatta tcgctaagtt
     1381 agtcaagcgt tggaaaatta atatactgca gtctccatat gcggagactg tagcaactga
     1441 agaagttata tgaacgccaa cgaaggagtc aatacaacaa ccccaacagc ttccacaaac
     1501 tctgatttag gctttgctac taattctaac taccagaatc tggccaactg ctgagatttt
     1561 ttactcaatt aatagcaaaa tgccatattt atgtgaaaag attttctgta aaaaattttg
     1621 tggaaaatag gggaggtgca attttcccaa gatca
//
LOCUS       DATLQL010000033         1352 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_894942, whole genome shotgun sequence.
ACCESSION   DATLQL010000033 DATLQL010000000
VERSION     DATLQL010000033.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1352)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1352)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1352
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_894942"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..681)
                     /locus_tag="VNB68_00335"
     CDS             complement(<1..681)
                     /locus_tag="VNB68_00335"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HVD35826.1"
                     /translation="MQIYSNLTLRIRPANKEDRQDVLRFCNDTFEWGDYIDQVWDLWY
                     LDRNGLLIVVEEEEQEDKIQRSKKQSSVIAVSHVSLCPNRNIWLEGIRVNPNYRRRSI
                     ATALLNKMISYGKERGAREASAVVAYNNIASQLMMQKMDFVVISRWNYYSINKIPKRV
                     GKLEARSKVATLNDIEMICNYLRHSETYKSSGETYVSSWRWYSLDLYSDALPDLVKNK
                     KVLVIENER"
     gene            995..>1352
                     /locus_tag="VNB68_00340"
     CDS             995..>1352
                     /locus_tag="VNB68_00340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35827.1"
                     /translation="MNNNNIASSNIKFKRIAVAAITVTLLLILFVYNNNQKPIPFAVG
                     LYENTHPGPPGPRGPPGAPGQPGNAGSASATASATATVIIKNEPASIKSYSGTITPTS
                     QPGSASSAFADVETIRL"
BASE COUNT          382 a          285 c          229 g          456 t
ORIGIN      
        1 tcgctcattt tctattacaa gtactttttt gttcttcaca agatctggta aggcatcgga
       61 atatagatct agcgagtacc atcgccatga gctgacgtat gtttctcctg acgatttgta
      121 agtttctgaa tgtctcagat aattgcatat catctcaata tcattcaagg ttgcaacttt
      181 agacctagct tcaagtttac cgactctttt gggaattttg tttatgctgt aataattcca
      241 tcttgatatc acaacaaaat ccatcttttg catcattaac tgtgaagcaa tgttattgta
      301 cgccaccact gcagaggctt ctcttgctcc tcgttccttg ccatatgata tcattttatt
      361 caataacgct gttgcaatgg atctacgcct ataattggga ttaaccctga tgccttccaa
      421 ccagatgttt ctgttaggac ataaagatac atgagaaaca gctattactg atgactgttt
      481 tttgctgcgt tgtattttat cctcttgctc ctcctcctct actactatta aaagtccatt
      541 tcggtctaaa taccacaaat cccatacttg gtctatgtag tctccccatt cgaatgtatc
      601 attgcaaaat cttaagacgt cttgcctatc ctctttgttt gcaggtctaa tcctcaatgt
      661 gaggttacta tatatctgca ctaagtattt tttccttctt gtatgatatc tatttagcag
      721 agtgctggtt aaaatgcttg atacaaagtc gagatttgga tcagctgtat ttgcataacg
      781 tgagtgcaat caaaggttgt aagattatcc ttatgtaatc cattaccttt ttgtcaaaac
      841 atcattattg acacataatt cattggtgtg acagcattgc agctgacttg cagctgattt
      901 gcgtcgttct ttgtgagaag aacaaactaa aaataatata cagaaatccg attgaaatcg
      961 atttcttttt atataatgct aacttttgcc agacatgaat aataataata ttgcttcatc
     1021 gaatataaaa tttaaacgta tagctgttgc tgcaataact gtcactctac tactaatctt
     1081 attcgtgtac aacaataacc aaaagcctat tccttttgct gttggattat atgaaaacac
     1141 gcatccagga ccgcctggtc cacgcggccc tccaggagcc cctggtcagc caggtaatgc
     1201 agggtctgct tcagctactg ctagcgctac tgctactgta attatcaaga atgaacctgc
     1261 aagtatcaaa agttattcag gaacgataac tccaacatct cagccaggga gtgcttcatc
     1321 tgcatttgca gatgtagaaa caataaggct ag
//
LOCUS       DATLQL010000034         1080 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_895065, whole genome shotgun sequence.
ACCESSION   DATLQL010000034 DATLQL010000000
VERSION     DATLQL010000034.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1080)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1080)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1080
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_895065"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(304..426)
                     /locus_tag="VNB68_00345"
     CDS             complement(304..426)
                     /locus_tag="VNB68_00345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35828.1"
                     /translation="MKQDEEKEQLRVTSASTPAEDEEEGEAKDEKKKKEGTTTK"
BASE COUNT          274 a          233 c          190 g          383 t
ORIGIN      
        1 gcattgcgtt gacgcagaga gcccctctct cttacactct cccttcagtg ctagctgaaa
       61 tttttgaata cacagctgtc cgctgctgtc aaagataaac gataaccata agctgaggtc
      121 gtgggttcaa ctcatcccac ccggtccatt tctttctgcg cgggaactac gccattaaat
      181 tacgtttgtt ttgagcaatt gtccgacaaa aagcccagca atgccatata gtaagacctg
      241 aaaaagcatc acgactgtaa ttcttaggat agactatttt ttaattatcg tctcatatta
      301 gtatcacttg gtagttgtcc cctctttttt cttcttctca tccttcgctt ctccttcctc
      361 ttcgtcttca gcaggcgttg atgcactcgt tactcgaagt tgctccttct cctcatcttg
      421 cttcaatgag gtatttcgtt agtatatgag aaatatatct tatccctatt ttctttttca
      481 tggtctactg cagaattgca gatttagcct attgcttgtc tctgctatta ctcgtggatt
      541 gcgattatcc tgcgaaaagc tgtatggtaa caataatctt tgctttcgct cccacccatc
      601 aggaggacac gttgtattat tgaaataata taatttccat tatctctaat atgcctgcaa
      661 acattctaag ctgaccttct tcagtagctt gatttggaat ttatgctctt tttagtcgag
      721 ctttttctcc tcttctttat atttttcatg attcgctgca tattagtagc gtgtactatt
      781 tgggtatgat gcataacaac aacattatag aatgtgcatt gcacattctt tcatttcata
      841 gctgagttaa gtaattcttg gaacaagcat ctgagcagaa ctccaaaacg cctatggtag
      901 agcttgaata taatacgccc atggtaaggt tttgaaattc tttgccgcat gatttacata
      961 cttttatcat tttctatctg gctatattat ttatgccgac cagccttaag gttctttgca
     1021 tcagagtgaa gaggaaaagg cagaattata tatcgtcgtc aggatatgtt aaagatgagg
//
LOCUS       DATLQL010000035         1456 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1428620, whole genome shotgun sequence.
ACCESSION   DATLQL010000035 DATLQL010000000
VERSION     DATLQL010000035.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1456)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1456)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1456
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1428620"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..404)
                     /locus_tag="VNB68_00350"
     CDS             complement(<1..404)
                     /locus_tag="VNB68_00350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35829.1"
                     /translation="MLVLLIPAAFGFNREQQANPPKAYEVAKTHNTERFVFPYSASNY
                     DRKHPLVYTYDKPIGVNWILTIQNNMTYALRQDAKTVIKMQEQSPSDKFVEITMFGDA
                     SKKLLVAVNTKESGYVRVYQKDTDGWSREQPL"
     gene            complement(791..1063)
                     /locus_tag="VNB68_00355"
     CDS             complement(791..1063)
                     /locus_tag="VNB68_00355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35830.1"
                     /translation="MASTIFRVQSHKFSQDNIHTTLVCSKCDEVFSKEFPLALEGQTI
                     EFKCPVCGVPGEADIPYKSAEEREEFEEDFEETEEEEGGEDFEEEY"
     gene            complement(1271..>1456)
                     /locus_tag="VNB68_00360"
     CDS             complement(1271..>1456)
                     /locus_tag="VNB68_00360"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I"
                     /protein_id="HVD35831.1"
                     /translation="RMGVKGVIVIAEGEHLCMKMRGVKNSSVIMTAAHRGIMEQKEIR
                     HNILALIYNSKPEYQSI"
BASE COUNT          408 a          315 c          243 g          490 t
ORIGIN      
        1 attaatggct gttctctaga ccaaccatca gtatcctttt gatataccct tacgtatcca
       61 gattcttttg tgttaacagc taccagcaac tttttggaag catcaccaaa cattgtgatt
      121 tcgacgaatt tatcgcttgg tgattgttct tgcatcttta tgacagtttt tgcatcttgc
      181 ctaagagcat atgtcatatt attttggatc gtcaaaatcc aattgactcc tattggttta
      241 tcataggtat aaacgagggg gtgctttctg tcatagtttg acgcagaata gggaaagaca
      301 aaccgctcgg tgttatgcgt tttcgcaact tcgtacgctt taggtggatt tgcttgctgc
      361 tctctattga acccaaacgc agcgggaatt aacagaacta acattagacc taagataatc
      421 aaataacgca caagatctaa tctttaattt agtaatataa tcctagttta atttcaactt
      481 tgatgttctt ctaatcttgg tctattttgc tacaagacac tgtttacgtt tctcctaatc
      541 gaagagatag gactatgctt caacagaagt aataaagaat taggttatta ggaacgaaca
      601 agtaaaaccc gtggaaaact ttattttatc ttggaacatc catctctaaa tgaaatgcaa
      661 tcgaaatgga agccgcctgg agtttgatac cgcaattttc taatgcgtaa tgtctttcca
      721 aatcggggta caattcggta tcatattagg agatgcagtc tttcatgaca ggcgatgcta
      781 ctaacattgg ctaatattcc tcctcaaaat cctctcctcc ttcttcttcc tctgtttctt
      841 caaaatcctc ctcaaattct tctctttctt ctgcactctt gtacggaata tctgcttcgc
      901 caggcacgcc gcagaccgga catttgaatt ctattgtctg accctcaaga gccaggggaa
      961 attccttcga aaacacctca tcacacttcg aacatactaa tgtagtatga atattatctt
     1021 ggctaaattt atgtgactgc actctaaaga ttgtacttgc cattcttctt acctatagaa
     1081 aatatacttt tttataagcc ttgttatgca cgattcacaa aagtagataa tagcttttct
     1141 aagcgccttc agtgatcagg gtttcgcatg attagatgta tattattata gtatatgccc
     1201 tttaaacctc tcaggcatct aagactgatt tcttcactga tgattcggcg catagctacg
     1261 acaaaagtct tcaaatagac tgatactccg gttttgagtt ataaatgagg gcaagaatat
     1321 tatgacgaat ctccttctgt tccataatgc ctcggtgtgc tgctgtcatt ataacactac
     1381 tgttctttac ccctcgcatc ttcatacaca agtgttcacc ttctgctatc actatgactc
     1441 cttttacacc catccg
//
LOCUS       DATLQL010000036         2350 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2494700, whole genome shotgun sequence.
ACCESSION   DATLQL010000036 DATLQL010000000
VERSION     DATLQL010000036.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2350)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2350)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2350
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2494700"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..961
                     /locus_tag="VNB68_00365"
     CDS             <1..961
                     /locus_tag="VNB68_00365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HVD35832.1"
                     /translation="NHAQAVIGVGNGAFQKSLGDNIEIKRFIFNAGPSAIEALFAKQI
                     DATYVGPNPAINGYIVSGGKDVRIVAGASSGGAVFVVRNDSGIQSPKDFAGKKFASPQ
                     LGNTQDVALRKYLLDNGYQTKEHGGNVEVVPAKNADILTLLLKKQVDGAWVPEPWGER
                     FIKEANSRLFLDERDLWPDGKFVTANILVRTDYLQNNPDVIKKLLASHVDETQWINTH
                     QDEAIKQFNIELKKLTGQIIPEDVLKQSLPRLELTWDPIISSLIKSANDAFDIGFLGK
                     TRPDLSGIYDLKLLNEVLKDKGLQTIDESPRSGNATTTAANAT"
     gene            complement(1236..2231)
                     /locus_tag="VNB68_00370"
     CDS             complement(1236..2231)
                     /locus_tag="VNB68_00370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphosulfolactate synthase"
                     /protein_id="HVD35833.1"
                     /translation="MTHLLDELVKDRVDAKKPREEGLSYTIDKLRAFDRENFEIIAPM
                     IDVVKIYSAFPLLIPDSFLKKKIQFYHGFDILVSTGSTLTEFAISEDSFDEFLKESAR
                     VGFDIIEIGENNIDLDKDRKKRLAESVLAAGLKFNWKIGKKDPRHQLRIDNALSKVEE
                     ALSVGAKKVILEANEGINVGIYNENGAIRWNYLAALTAKYPPNTFIFEAPLESQQSAL
                     VAEFGQRVNLAEIAIDHVVSIESQRRGFLSKSSFGMSFMQKEIGGGPASKFIYYLINT
                     KYPIEQSDLINITHLPRRTIQSAIEDLRDQGFIIERNSLDDTRRKVYYPVQSEWL"
BASE COUNT          763 a          448 c          455 g          684 t
ORIGIN      
        1 taatcatgcc caagcagtaa ttggggtagg aaatggagcc tttcaaaagt ccttggggga
       61 caacatagag atcaaacgat tcatctttaa tgcaggaccc tcggctatcg aagcgttatt
      121 tgctaaacaa attgatgcca catatgtggg tccaaatccc gcaataaacg gatatatcgt
      181 atcaggtgga aaagacgtga ggatagtggc aggtgcatca agtggaggag ctgtattcgt
      241 tgtcaggaat gattcaggga ttcaatcacc caaggacttt gcaggcaaaa agtttgcctc
      301 acctcagcta gggaatactc aggatgtagc tctcagaaag tatcttttgg ataatggata
      361 ccaaacaaaa gaacatggag gaaatgtgga agtcgttcct gccaaaaatg cagatatctt
      421 gacactccta ctaaagaaac aagttgatgg agcatgggtg ccagaacctt ggggagaacg
      481 ctttattaaa gaagctaatt caagactgtt cctagatgag agagacttgt ggccagatgg
      541 taagttcgta actgcgaaca ttcttgtaag aacagattac cttcaaaata atccggatgt
      601 cataaagaaa cttttggcta gtcatgtaga cgaaacacaa tggataaaca ctcatcaaga
      661 cgaagcaata aagcaattca atattgagtt gaaaaaactt actggacaga taattccaga
      721 ggatgttcta aagcaatctt taccaagact ggagttgacc tgggatccta taatatcatc
      781 attgatcaag tctgcaaatg atgcatttga tattggattc cttggtaaaa cgcgaccaga
      841 cttatctggg atctatgatt taaagcttct aaatgaagtt cttaaagaca aaggactaca
      901 gacaatagac gaaagtccta gatccggtaa cgctacaaca acagcagcta atgctactta
      961 acaacatctt ctaatgctac aaatgcaaca aaatagtagg ttggtagtgt aaaatgacat
     1021 ctacatacat atcagaaagc tcctatgccc ggccagaaat cctaatggtg cacaatggct
     1081 gcaagacctg ataaataaca aaagacttga attgcacaag tcgataatga tcaatttgta
     1141 cacatttcga ctaagaaagt ataggccgat aggtaaaata atgatctagg attattcgca
     1201 ttttagaatc aatgaggttc ctagatatga ctagttcaaa gccattctga ttgaactgga
     1261 tagtacacct ttcttctagt atcatccaag ctgttcctct cgattatgaa gccttggtct
     1321 ctcaagtctt cgattgcact ctgaattgtt cttctaggta gatgggttat gttaattaaa
     1381 tcgctctgtt caattggata ttttgtattt attaaataat aaatgaactt tgaagcagga
     1441 cctcctccaa tttccttctg catgaacgac ataccaaatg aggatttaga aagaaaccct
     1501 cttctctgag attctattga aacaacatgg tctatggcaa tttcagcaag atttacacgt
     1561 tgaccaaatt cggctaccag agcagattgc tgggattcaa ggggagcttc aaaaatgaaa
     1621 gtgtttggag ggtattttgc ggtaagagca gcgagatagt tccatctaat tgcaccattt
     1681 tcattatata ttcctacatt gataccttcg ttggcctcaa gaattacctt cttcgcacca
     1741 acacttagtg cttcctcgac cttcgacagt gcattgtcaa tccgaagctg atggcgagga
     1801 tccttctttc ctattttcca attaaatttt aagcctgcag caagaactga ttcagctaac
     1861 ctcttctttc tatctttatc taaatcaata ttattctcac caatttctat tatatcaaac
     1921 ccgactcgag cagactcctt aaggaactcg tcaaaagaat cttctgatat cgcaaattct
     1981 gtaagcgtac ttccggtcga aaccaaaata tcaaaaccat gataaaattg tatttttttc
     2041 ttaagaaagg aatctggaat taataatgga aatgcgctat aaatcttaac tacgtcaatc
     2101 ataggtgcta tgatctcgaa gttttctctg tcaaatgctc gaagtttatc aatagtataa
     2161 gataatccct cttcgcgagg cttcttggcg tctactctgt ctttgacaag ctcgtctaac
     2221 aaatgggtca ctgtttgagt aaaatttgca tatatggaac gtaggatata tggaacgtag
     2281 gatatatgca aaaaatgaat aaggtgctat ctacaggatg ttttccttca tcttgtatta
     2341 ttctttgcat
//
LOCUS       DATLQL010000037         1243 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_7759, whole genome shotgun sequence.
ACCESSION   DATLQL010000037 DATLQL010000000
VERSION     DATLQL010000037.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1243)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1243)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1243
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7759"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..306)
                     /locus_tag="VNB68_00375"
     CDS             complement(<1..306)
                     /locus_tag="VNB68_00375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35834.1"
                     /translation="MSSSRKYFGIIGKKLHSLAKAELVCLFKTYQARSIQYDHLSSVV
                     RAEGSAELERIAKRAVLTKYFAEQIEEDEYEKRFHSKTFNCILFGTDKKIAMEVLVKK
                     "
     gene            738..>1243
                     /locus_tag="VNB68_00380"
     CDS             738..>1243
                     /locus_tag="VNB68_00380"
                     /inference="COORDINATES: protein motif:HMM:NF015947.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate uptake regulator PhoU"
                     /protein_id="HVD35835.1"
                     /translation="MLFSENSEVRKIQYTGRSTYILSIPKKWISEMHLQAGDSVTIVR
                     EANHSLSIFPNTVRAPIASGDVHSIVAKEDRENTLKRKVVSMYLTGYNVINLKSKSGR
                     IYPHQREAIREVVRRNLVGTEIIAESSDIMTIQVLSSLPELSVKTAVRRMFLIGTSMH
                     KDAMAALS"
BASE COUNT          394 a          230 c          230 g          389 t
ORIGIN      
        1 ttttttcact agaacttcca tggcaatctt cttgtcagtt ccaaatagta tgcagttaaa
       61 ggttttacta tgaaaccttt tttcatattc atcttcttct atctgttcgg caaaatactt
      121 cgtaagtact gccctttttg ctattctttc taattctgcg gagccttcgg ccctgactac
      181 ggaagataag tgatcatact gaattgatct ggcttgatac gtcttgaaaa gacaaacaag
      241 ctctgctttc gccaacgagt gtaatttttt accaattatt ccaaaatact ttcttgaaga
      301 actcatgaaa atatcacgat taggatctaa ctacaaacat caagaaatat caacattcaa
      361 gaatcattct agaatttgtc tattcctcaa taccatccaa ttttcatctt gaaaccaagg
      421 tagaggaaaa gcaaatatcg gactaacacg tatatcttgt ttcttgttaa tcttcttagt
      481 ctcatcatcc gatatttgat aaaggacata tcaatcatct aatcagagtt atctataggt
      541 cttctctatt tattaatgga atttgtctta atttagcgat agtataggta attaattaga
      601 tttaagtgaa ctgtagtgac aggaggcatt acaaattgtc tcatcagaac tttgcttcaa
      661 aatgtacggc tatatagatc tatatagtaa attaacataa catgtttaag ggtacgagta
      721 tatggtgatc tatattgatg ttattttccg aaaatagtga agtaagaaaa atacaatata
      781 ctgggcgttc tacatatatt ctctccatcc ctaaaaaatg gattagtgaa atgcatctcc
      841 aggccggaga ttctgttacg atcgtacgtg aggcaaatca ttcactctca atatttccga
      901 atacggtgag agcgccgata gcaagtggtg atgtccattc catcgtggca aaagaggacc
      961 gagaaaatac actcaaacgg aaggttgtat caatgtattt gactggttat aatgtgatca
     1021 atctaaagtc aaagtcgggc aggatatacc ctcaccagcg ggaggcaatt agggaggtgg
     1081 ttcgaagaaa cttggtgggc accgaaatca ttgcagagtc atccgacata atgacaattc
     1141 aagtcctttc gagcctacca gagttgtcag ttaaaactgc cgtgagaagg atgttcttga
     1201 ttggaacatc aatgcacaag gatgccatgg ctgcgctatc aga
//
LOCUS       DATLQL010000038         1007 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_7861, whole genome shotgun sequence.
ACCESSION   DATLQL010000038 DATLQL010000000
VERSION     DATLQL010000038.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1007)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1007)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1007
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7861"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..215
                     /locus_tag="VNB68_00385"
     CDS             <1..215
                     /locus_tag="VNB68_00385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35836.1"
                     /translation="SHIHILAPKSRPPLNFSEQLLMLNLVSESSYWAIFLNEFSAAID
                     KVGKTRAGLIFPSVDKKFQIRCLFVT"
     gene            complement(295..570)
                     /locus_tag="VNB68_00390"
     CDS             complement(295..570)
                     /locus_tag="VNB68_00390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35837.1"
                     /translation="MAENLRLCPQCCEGHMRPISKVAEEDGIIEFYECDNEYCRYKSA
                     NTGMDQGVSVGEQTNEPIMCSKCNIIFNTELEYKQHYDEKHKASTSN"
BASE COUNT          294 a          209 c          178 g          326 t
ORIGIN      
        1 atagccatat acatatcttg gctccaaagt caagaccacc tctgaatttc tcggaacagt
       61 tacttatgtt aaatttggtc agtgagtcat catattgggc catctttcta aatgagtttt
      121 ccgccgcaat cgacaaagta ggaaagacga gggcaggatt aatttttccc tcggtagaca
      181 aaaagttcca gataagatgc cttttcgtaa cataaggaca aacgaatggt tcgatacctc
      241 ttcagtcact ggtgactaca gaacggaact tctaagcaaa catggagaac tttttcaatt
      301 tgaagtagat gccttatgct tttcatcata atgctgtttg tactctaact cagtattgaa
      361 tatgatatta cacttactgc acattatagg ttcatttgtt tgttctccca cgcttacccc
      421 ttggtccatt cctgtatttg cactcttgta tctacaatac tcgttatcgc attcatagaa
      481 ttcaatgatg ccatcttctt cagcgacctt actgattggt ctcatatgac cttcacagca
      541 ttgaggacag agtctcaaat tctcagccat ttacttcctt cctttgatct atctatatgc
      601 gcactaatga actatacttt tggagagcat aacacatttg aggaacttga taggacatac
      661 tttccattta gacctgttag ggagattaac tcctgaaata tctattacac tccaaccata
      721 cgccataact aataaacgaa ttaaataatt tcattgatat ggaaaatctg cgatgaaatg
      781 tctgaaagta ttaatcgcga tcctgcacaa tttatcattt taaattaatt ttcttaatgc
      841 atcaatgacg gaattcaggg atgttgactc tgtggtgtgt tctgtagtca actggatcta
      901 cctttactgt atgtgagttg cgtggttgcg tgtaccatca gaaccacgct acgaaacgga
      961 ttcatgctaa ggctttctaa cagacagact atcaggtagt ggcgaca
//
LOCUS       DATLQL010000039         1817 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1962612, whole genome shotgun sequence.
ACCESSION   DATLQL010000039 DATLQL010000000
VERSION     DATLQL010000039.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1817)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1817)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1817
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1962612"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            180..299
                     /gene="rrf"
                     /locus_tag="VNB68_00395"
     rRNA            180..299
                     /gene="rrf"
                     /locus_tag="VNB68_00395"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(405..980)
                     /locus_tag="VNB68_00400"
     CDS             complement(405..980)
                     /locus_tag="VNB68_00400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35838.1"
                     /translation="MPILQIKEIIDMLRGLGIQSRVGVMESDIDELYKPYYEQWLGNR
                     DGFIKILTGNIDYVGTEEIMRLGPFHNMYCLIHNSHLMETHPDHPKLLNALPCYKLNK
                     GKVDEIGWNGSILAERLNKDNILCSRISRNIVDEEVRSISIRVVNYGCLIQTKVWDPK
                     GFVTIYDIIDSIGKSVKNLLEEIHIGEEISN"
     gene            complement(1051..>1817)
                     /locus_tag="VNB68_00405"
     CDS             complement(1051..>1817)
                     /locus_tag="VNB68_00405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aminopeptidase"
                     /protein_id="HVD35839.1"
                     /translation="FGTKDKEVRCLLVGKAVTFDTGGISLKPSEKMDEMKFDKCGGCN
                     VIAIIKAIAQLCLPINVVGIIPAVENMPSGSSYRPGDIIKMYNGKTVEVGNTDAEGRI
                     ILADALSYGVKTYSPAAIIDMATLTGASIIALGSNVAALLGNDPKLVDKLIHAANQSG
                     EKLWQLPIFEEHEEQLKSSIADMKNIGGRSAGAITAAVFLSNFVDSTPWVHLDIAGTA
                     WFQEGSSEKSYIPKGATGFGIRTIIRLLMEMSTLQA"
BASE COUNT          502 a          396 c          329 g          590 t
ORIGIN      
        1 aaaattgtaa tagcaagata ttataatcgt tgagttttta cttctaggcc ccattctgat
       61 actattcatt atctagaatt ggcttgatac aaaaacgtcc tactctgtta aggatttcct
      121 ttctcatgtt gggtgtgttt aacacaatag gattaaatta ggagaaggca aaagataggt
      181 aagccggcca tagcgatagg gcgcgacccg gtccctttcc gaacccggaa gtcaaaccta
      241 tcgtcgctgc tgtgttactg atctgcgtga gcggttggga agcagcagtg ctggcattag
      301 ttttggaact aatccaattt gtatttgaat cagcattata aactcgaact agcttgcagt
      361 aaattatgac caggtactcg aaaacatttt ttcgagttct agagtcaatt gctaatttct
      421 tcgcctatat gaatctcttc taacaaattc ttgacacttt tcccgatact gtcaataatg
      481 tcgtatatag tcacaaaacc tttggggtcc catactttag tctgaatgag acatccatag
      541 ttaactactc gtatagagat tgatctaact tcttcatcga caatgtttct actaattcta
      601 gagcataaaa tgttatcctt gtttagtcgc tcggcaagaa tacttccatt ccaaccgatc
      661 tcatccactt ttcctttgtt caacttgtaa catggaagag cattcaacaa tttagggtga
      721 tcggggtgag tctccatcaa atggctattg tgtataagac agtacatatt gtgaaaaggt
      781 ccaagtctca ttatctcctc ggtaccaaca taatcaatat tcccagttag tatttttatg
      841 aaaccatccc tatttcccaa ccactgctca taatatggtt tgtaaagttc gtcaatgtca
      901 gattccatga cgcccactct gctctgaatc cccaatccac gcagcatatc aattatctct
      961 ttaatttgta gaattggcat taatgaataa ttgttattga tgtactttaa ttttttaaca
     1021 attcaaactc gaggcgtttt cattatatcg ttatgcctgc aaggtggaca tttccattaa
     1081 tagtctaatg attgtccgaa ttccgaatcc cgttgctcct ttcggaatat agcttttctc
     1141 agaagatcct tcttggaacc aagccgttcc agcaatatct aggtgaaccc atggagtact
     1201 atcaacgaaa tttgagagaa agaccgcagc ggttatagca cctgcggatc ttcctccaat
     1261 atttttcatg tctgcaatag agcttttcag ttgttcttca tgttcctcga agatagggag
     1321 ttgccacaat ttttcacctg attggttcgc agcatgaatt aatttatcga ctaatttcgg
     1381 atcattgcct aataatgcgg ccacgtttga tcctagtgca atgatggagg cgcctgttag
     1441 tgttgccata tcaatgatag cggcaggcga atatgtcttt actccatatg acaaggcatc
     1501 agccaaaatt atcctacctt ccgcatcagt gtttcctact tccacagttt ttccattata
     1561 catcttaatg atatccccag gtctatacga agaccctgaa ggcatattct ctactgcggg
     1621 tatgatgcct acaacgttga tcggtagaca aagctgagct attgccttaa ttattgcaat
     1681 aacgttacag cctccgcatt tgtcaaattt catttcatcc atcttctctg atggcttaag
     1741 ggaaatcccg ccagtatcaa aagtcactgc cttgcctacg agaaggcaac ggacttcttt
     1801 gtctttggtt ccaaagt
//
LOCUS       DATLQL010000040         2967 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_8693, whole genome shotgun sequence.
ACCESSION   DATLQL010000040 DATLQL010000000
VERSION     DATLQL010000040.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2967)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2967)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2967
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8693"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..492)
                     /locus_tag="VNB68_00410"
     CDS             complement(<1..492)
                     /locus_tag="VNB68_00410"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015325.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HVD35840.1"
                     /translation="MAKIAVIVGSVRRDRQGIKVAKWIEKKLLSRNHTVLFIDPLELK
                     LPLLDRMYKEMTDPTQELKNLRNKIKNAEGYVAITPEYNRSTSAAMKNTLDYFLEEYF
                     FKPSAIVSYSPGIFGGVNAAQQLRLVFAELGAPSIPSAFTIPRVTNAFSENGDLTDET
                     YDKK"
     gene            complement(734..1798)
                     /locus_tag="VNB68_00415"
     CDS             complement(734..1798)
                     /locus_tag="VNB68_00415"
                     /inference="COORDINATES: protein motif:HMM:NF024883.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HVD35841.1"
                     /translation="MLNYLIGNILAIHNNNNIFHIFLVVDEIDRILLVQLGKNSRASS
                     YEITRYLQNLGYRITDRTVRHRLVKLEKSDVILGYSLLLNPTLLSEKINRTILLKFKY
                     TASTSVMTSRLEKYCEESSFCIYSAKLTGDFDWVCHFVFDSVEQYEFESNNFLNRFVE
                     LIKDFHSYESSMVKASPYVLIDDFDAREQKWRVYKILNSLQKYEKLNEKLQFIVESLV
                     KHFDAKFARIWLLDKERKNLILKFTAGKYKNLNGEFSKVPADSNKIGNIVITGKPTIT
                     NDVINDKRIRYPEWAKRERLQSFGGYPLTHSHNVIGVLAMFSTKRLQAADFEILGVFS
                     DQVSKELEGVFDAIDFLIPK"
     gene            1916..2221
                     /locus_tag="VNB68_00420"
     CDS             1916..2221
                     /locus_tag="VNB68_00420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35842.1"
                     /translation="MDFFEIDRVVEDLAKNYAAPCTTTWFKVTNNKKPSDEEYRAKVV
                     EFMKQFENILLARFPDSEQATLCLEYVKKQLQAQISLIRRGNNKEVERRFQYYVNYN"
     gene            2324..2923
                     /locus_tag="VNB68_00425"
     CDS             2324..2923
                     /locus_tag="VNB68_00425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35843.1"
                     /translation="MLDITRLAVPAIAILAIGGVISFLLAYSFYPEKHENVTVDGKCY
                     ELLGTAHEQYVNLAARRDIETLRLQLSKVEPKDAIIPIILSGRDSDIEHLRHSYQLNL
                     ISQQKVKYYPNIDASVVTANIAKNQLQNIAGNLTLKDVYPSAKTIAGSIGIEPNNYIT
                     SAEGMDISIKSKEFMSNGIREIIANSDGVKSAYCRTGVY"
BASE COUNT          956 a          573 c          539 g          899 t
ORIGIN      
        1 ttttttatcg tatgtttcat ccgttagatc accattttca gagaacgcgt tagtcaccct
       61 tggtatcgta aaggctgatg gaattgaagg agctcccagt tcagcaaata ccaatctgag
      121 ctgttgtgct gcattcaccc caccgaatat tccaggtgaa taagatacta tggcagaagg
      181 tttgaagaaa tattcttcaa gaaagtaatc aagagtattc ttcattgccg cagaagtact
      241 tcgattatat tctggcgtaa tggccacgta cccttccgca ttttttattt tgtttcgaag
      301 attcttcaat tcctgggtag ggtcagtcat ctccttatac attctatcta atagaggaag
      361 tttcaactca agcgggtcga taaagagcac agtatgattt cgactcagta gcttcttctc
      421 gatccatttc gctaccttaa ttccttgacg atcacgtcta actgaaccta caattacggc
      481 gatctttgcc atgatcccac ttcactaagc aataatattt aatattagtt actccagcta
      541 tcataaagaa aaatattctg gctttcgata tgaagatgga tgcctctacc ttggataccg
      601 attctaacag gaatgataat gcatctacta gggcagaaga gaataaagac tattgcgagg
      661 aatactgcat gtgtgctgtt ttgtccaagt aattagtttg cagtatactc gagaacagct
      721 agtagaagat attttacttt ggaatcaaga aatctattgc atcgaatact ccttcgagtt
      781 ctttggatac ctgatctgag aacactccta gaatttcaaa gtcagccgct tggagtctct
      841 tggtgctaaa catcgcaagg actcctatga cattgtgact atgagtcaga ggatatcctc
      901 caaatgattg caatctttct ctcttagccc attcaggata tcttattctc ttgtcattaa
      961 taacatcatt tgtaattgtt ggtttaccag taattactat attccctatc ttatttgaat
     1021 cggcaggaac ctttgaaaac tccccattaa gattcttgta cttgccggct gtaaatttca
     1081 aaatcaggtt ttttcgttcc ttatctaaca gccatatcct agcaaactta gcatcgaaat
     1141 gtttcaccaa actttcgact ataaactgga gcttttcgtt tagcttttca tatttctgta
     1201 aagaattgag aatcttgtaa acccgccatt tttgttctct tgcatcgaag tcatcaatca
     1261 gtacataagg tgaggctttt accatacttg attcataaga atggaaatct tttatcaatt
     1321 caacaaatct attcaagaaa ttgttacttt caaattcata ttgctcaaca gaatcgaaaa
     1381 caaaatgaca tacccaatca aaatctcccg tcagtttagc ggagtaaata caaaatgatg
     1441 attcctcaca atatttttca agacgagagg tcatgacaga tgtgctagct gtatatttga
     1501 atttaagaag aattgtacga tttatttttt cagatagtaa agttggattt agaaggagag
     1561 agtatccaag tataacgtcg gatttctcta atttcaccaa tctatggcgt acagttctat
     1621 cggtaattct gtaccctaaa ttttggagat acctcgttat ctcatatgag gacgcacgtg
     1681 aattcttccc tagctggact agcaggattc tatcaatttc gtctaccact aaaaaaatat
     1741 ggaagatatt gttattatta tgtattgcca aaatattgcc aattaggtaa ttcaacaacg
     1801 aaaaaatata tattgttgat atcagtctgt ggtaggattt cctaatcggc aacgaagggc
     1861 ctcatttgtt tccggagaga atataatcta atttcatgca tactaagata tgaaaatgga
     1921 cttttttgaa atagatagag tggttgagga tctcgcaaaa aactatgcgg cgccatgcac
     1981 tacaacatgg ttcaaggtaa caaacaataa gaaaccatcc gacgaagaat accgtgcaaa
     2041 ggtagtagaa ttcatgaaac aattcgaaaa tattctcttg gcgcgattcc cagatagtga
     2101 acaagccacc ctctgtttag agtatgtcaa aaagcaatta caagcccaaa tttcactaat
     2161 tcgaagagga aataataaag aagtagaaag gcggttccaa tactatgtca attataatta
     2221 atgattatac ttgggataaa tgctccgcat tgactacgtt gaattgtcaa tcgttccatc
     2281 ttgccctaaa attagataca gtaactaata gctcccatga cccatgttag acataaccag
     2341 acttgcggta ccagccatag caatactcgc tatcggtgga gtaattagct ttcttcttgc
     2401 ttatagtttc tatcctgaaa agcatgagaa tgttactgtc gatggcaagt gttacgagtt
     2461 actcggtaca gcccatgagc agtatgtgaa tcttgctgca agaagggaca tagagacctt
     2521 aaggctacaa ttgagcaagg tcgaaccaaa agatgcaata atacccatca tccttagtgg
     2581 cagggactcc gatatcgagc atcttagaca tagctaccaa ctaaacctaa tatctcaaca
     2641 aaaagtgaaa tactatccca atattgatgc aagtgtagta acggcgaata ttgccaaaaa
     2701 tcaacttcaa aatatagcag gaaatctgac acttaaggat gtctatccat cggctaagac
     2761 tatagctgga agtattggaa tcgaaccaaa taattacata acgtcagcag aaggaatgga
     2821 tatttcaatt aaatcaaagg aattcatgag caacggaatt agggaaataa ttgccaattc
     2881 agatggcgta aaatcagctt attgccgtac tggagtgtac taattagaca tgaagtcgtg
     2941 gacgactaca acccgtggtt tagccca
//
LOCUS       DATLQL010000041         2050 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1430446, whole genome shotgun sequence.
ACCESSION   DATLQL010000041 DATLQL010000000
VERSION     DATLQL010000041.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2050)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2050)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2050
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1430446"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1193
                     /locus_tag="VNB68_00430"
     CDS             <1..1193
                     /locus_tag="VNB68_00430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HVD35844.1"
                     /translation="DITDIIKLMKEEGVDHVQLNTNGIKLALSPETMRQVRAAGVSNL
                     YLSFDGVTPRTNPKNHWEVPYALQSARKCGMTVVFVPTVIKSINDHELGGIIRYAQKN
                     MDVVHAVNFQPVSLTGRMTKKEREKYRITIPDCIERIEEHTNGEIPTDAWFPVPSCMP
                     LTNVIEAFSKKPKYELSIHFACGAGTYVFEDIETKKLTPLTAFVDIKGLLEYFEEKAD
                     EIKSGSNRYWTMLEVIRKLNQFVDRSKQPHGLDLAKMFSSILLKRNFDSVGSWHVRSL
                     FLGMMHFQDKYNEDLERLQRCDIHYLTPDLRIIPFCAFNVIPEWYRDRIQKKFSIPVE
                     EWEKSHGQTLEAGLYRGLMRRGKPEAEMGCALSEMHRAAAATESATNDDHKGVELRNS
                     MAGA"
     gene            1367..>2050
                     /locus_tag="VNB68_00435"
     CDS             1367..>2050
                     /locus_tag="VNB68_00435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HVD35845.1"
                     /translation="MSTMKYIQLEPKEDIAVIKINRLEALNAMNTDVIAELSRTIDIV
                     GFDDGIKAVIITGAGERSFCAGADIAYMVNIDPIGAERYASSAQAVLNKIEKLEKPVI
                     AAINGFALGGGCELAMVCDLRIASSNAKIGQPEVTIGITPGWGGTQRLLRIVGPAKAK
                     ELVFTGKMITAEEAYQIGLVNKVVSLDDNDKLPPEIPKGDVSKEKERTGEVAKILNKK
                     LIEECLNLSK"
BASE COUNT          692 a          350 c          443 g          565 t
ORIGIN      
        1 atgatattac ggacattata aaactcatga aggaggaagg cgttgaccat gtccagctaa
       61 acacaaatgg catcaagcta gcattgtctc cagaaacgat gcgacaggta cgggctgcag
      121 gagtaagcaa tctttatctc tcttttgacg gtgttactcc ccggaccaat cctaagaatc
      181 attgggaagt accttatgca ttgcagtctg ctagaaaatg tggcatgact gtagtgtttg
      241 taccaactgt aattaaatca attaacgatc atgagcttgg tggtattatt agatatgcac
      301 aaaagaatat ggatgtagtt catgcagtca acttccaacc tgtttccttg actggaagaa
      361 tgacgaagaa agagcgtgag aaatatagaa taactattcc tgattgtatc gagagaatcg
      421 aagagcatac aaatggtgaa attccaaccg atgcgtggtt tccagttcct tcatgcatgc
      481 ctttaacaaa tgtaattgag gcattcagta agaaaccaaa atacgaactt tcaattcatt
      541 ttgcctgtgg cgcaggaaca tatgtttttg aagatattga gacaaagaaa ttaactcctt
      601 tgactgcttt tgttgatatc aaaggtttac tagaatactt tgaggaaaaa gcggacgaaa
      661 tcaaatctgg ttctaataga tattggacaa tgttagaggt gatacgtaag ctgaatcagt
      721 tcgtggatag gagtaagcaa cctcatggac ttgatcttgc caaaatgttt tcaagcattc
      781 tgctaaagcg taacttcgat tcagtcggtt cttggcatgt aagatccctt ttcctaggaa
      841 tgatgcactt ccaagacaag tataatgaag acctcgaaag actacaaaga tgtgatatcc
      901 attatctgac ccccgatctt agaatcattc cattctgtgc atttaacgtg attccagaat
      961 ggtatagaga tagaatacag aagaagttca gcatacctgt ggaagaatgg gaaaagtcac
     1021 atggccaaac cttagaggct ggtctttata gaggtctcat gagaagaggc aagcctgaag
     1081 ctgagatggg gtgcgcttta tccgagatgc acagggcagc tgcagctact gaatcagcaa
     1141 caaatgatga tcacaaagga gtagaacttc gcaatagcat ggctggagca taaataataa
     1201 gaatatctat ttcatacaca ttactctcaa atattcgtta gacaagaagt attaaagaac
     1261 catcttgaat ttattttcgc ataagtgttc tattctcatc tcctagtaat attccatact
     1321 ttatggacaa gatttaattg aaagataaga gttgcctttt atctatatgt ctacgatgaa
     1381 atatattcaa ctcgaaccaa aagaagacat agctgttatc aaaattaata gactagaggc
     1441 tctcaatgct atgaatacag atgtaattgc tgaactatca cgtaccattg acattgtggg
     1501 atttgatgat ggtattaagg ccgtaattat taccggagct ggcgaaagat cattttgtgc
     1561 aggtgctgat attgcatata tggtaaatat agatcctatt ggagctgaga gatatgcctc
     1621 ttctgcacaa gcagtgctta ataaaataga gaaattagag aaaccagtta ttgcagcaat
     1681 taacggtttt gcattgggtg gaggttgtga acttgcaatg gtatgtgatc tcaggatcgc
     1741 atctagcaat gccaagattg gtcagccaga agttacaatt ggtattacac cagggtgggg
     1801 aggaactcaa agattattga gaattgtagg cccagcaaag gcaaaagaat tggtcttcac
     1861 aggtaaaatg attacagctg aggaagcata ccaaattgga ctagtcaata aagtagtcag
     1921 cctagatgat aacgataagt taccacccga aataccaaaa ggcgatgtat ctaaagaaaa
     1981 ggaaagaaca ggtgaagtgg ctaagatact caacaaaaaa ttgattgaag aatgccttaa
     2041 cctttcgaag
//
LOCUS       DATLQL010000042         1536 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_8728, whole genome shotgun sequence.
ACCESSION   DATLQL010000042 DATLQL010000000
VERSION     DATLQL010000042.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1536)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1536)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1536
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8728"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            173..349
                     /locus_tag="VNB68_00440"
     CDS             173..349
                     /locus_tag="VNB68_00440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35846.1"
                     /translation="MAGAEHPEKYNWWLNELESLGVNTLEKNGLNNHKEASDLTEAVK
                     QTLYEDYLQVYSEK"
     gene            556..966
                     /locus_tag="VNB68_00445"
     CDS             556..966
                     /locus_tag="VNB68_00445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35847.1"
                     /translation="MNNDQKGQRDLTDDVKIMPDDVNFVKPGKANPKIIDKANPKIID
                     PTLKETYPSEIHALKIDANHIKIDGHEYLVVHDKLITTDRREIADTLYEWAGRMECAA
                     NAAMTAPDKINDDLLIKYRKLIALLEEHEMLDKL"
BASE COUNT          499 a          277 c          300 g          460 t
ORIGIN      
        1 ctttttatag aaattatata gccttgacct ttgaaagaag tccgacaagg taaggatatg
       61 atgtccgtgg ctttgatttc taaggaaaca aaaagaaata ccactcttac tgatactcta
      121 ttgcggcata tagtctcaga tgtgttatat atcatagagg cggacgccat gtatggctgg
      181 tgctgaacat cctgaaaaat ataactggtg gcttaatgaa cttgaatctc taggtgttaa
      241 tacactggag aaaaatggat taaacaacca caaagaagca agtgatttaa cagaagccgt
      301 caagcagaca ctttatgaag attatcttca agtctatagt gaaaaataat acaaaaaata
      361 cgtgtaacga cctgaaagat gcttgcgagc cgacatatga gattaacact ggactttaca
      421 aggcctgcag cttaatcttg ttatccatct ctttttctat gatttcacaa gtcgatttta
      481 gtacttgatt cattcctgta aggttacgcg atcccttgaa aagttaaatt ctaacgttgg
      541 cctataagtc ccctaatgaa taatgaccag aaaggtcagc gagatcttac ggacgatgtc
      601 aagattatgc cagacgatgt gaactttgta aagccaggta aggccaatcc taagatcata
      661 gataaggcca atcctaagat catagacccg acattaaagg aaacataccc aagtgaaatc
      721 catgccctga agattgatgc caaccacata aagatagacg gccatgagta cctagtagtt
      781 catgacaaac ttatcacaac agacagacga gagattgcgg acacgttata cgaatgggct
      841 ggcagaatgg aatgtgcagc caatgcggca atgaccgcgc cagacaaaat taatgatgat
      901 ctgttaataa aatacaggaa actcattgca ttattggaag aacatgagat gttagataaa
      961 ctatgaaagc ttggctttac attactatag cttagtccat attgtatcaa gttgggatac
     1021 acacaaaatg tctcgtttgg ttgtaaatct tattgatatt tttccggttg tcagtttcaa
     1081 ctatgtatca atctttttcc acgctaagta gttctctaag aacgctttcc tgatgttgtt
     1141 gaaatgctat ttgccatgag tcgcatcttg cttaacggct tttttcttgt ttgtgttatt
     1201 aatccaacaa cctattacta cactaactat tgttcctgaa gcaaggttta gagaggtact
     1261 ggatgctcaa gcatacgccc ccctttgacg tagagtatat caaaaaacca gtctattgtt
     1321 ggtgtttgag ttctctctct tttgtcagtt attataggta tttgtagaga ctttggagtg
     1381 attggtagta gcaataatat ttccagttta tcacccctat aatatactag aaatgaacta
     1441 gaaaagtaag acataatcca agcatgcctt gttaggagag gttctggagc atatactata
     1501 atagcacagt ctcagtatat agtttaggtt aattta
//
LOCUS       DATLQL010000043         1079 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_719926, whole genome shotgun sequence.
ACCESSION   DATLQL010000043 DATLQL010000000
VERSION     DATLQL010000043.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1079)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1079)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1079
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_719926"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..601
                     /locus_tag="VNB68_00450"
     CDS             <1..601
                     /locus_tag="VNB68_00450"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HVD35848.1"
                     /translation="YEKTLEIDPDNVAALNNLANILLDQGKEGEALKYLKYTTQMHPD
                     YAEAWINLGLINEEANKVDEAMKCYDRAKDLDPGSAALWHNRGYALRRQNKFREAIAD
                     YDTSLRLRPLHISTLMDKAFAHMSISEVDEADRCYDDVLKIEPNHAEALGDKGTVQFA
                     RGNYREALLLFDKSLKMEPNNAKLLNYRRIASEKIAENN"
BASE COUNT          356 a          193 c          224 g          306 t
ORIGIN      
        1 ttatgaaaaa actctcgaaa tcgatccaga caatgtggcc gcactcaaca accttgcgaa
       61 cattttatta gatcaaggga aggaaggcga ggctttgaaa tatctgaaat atactacaca
      121 gatgcatcct gactatgcgg aagcatggat caaccttggt ctaataaacg aggaagcaaa
      181 caaggtagac gaagccatga aatgttatga cagggcgaag gatctagatc ctgggagcgc
      241 cgccttgtgg cacaatagag gatatgcact cagacgacaa aacaagttta gagaggcgat
      301 agcagattat gacacatctc taagacttcg tccgcttcat atcagtactc taatggacaa
      361 ggccttcgct catatgagta tttcagaagt ggatgaggct gatagatgct atgatgatgt
      421 cttgaaaata gagccaaacc atgcagaagc cttaggagac aaaggtaccg tacaatttgc
      481 aaggggaaat tacagagaag ccttactact ttttgataag tctttaaaaa tggagccaaa
      541 caatgcaaag ctattgaatt acagacgcat tgcgtctgaa aaaatagcag agaataacta
      601 aaaatatgat ttaggtgtaa ttcaggctta tgtcttattt tttatggaat tgataaattg
      661 aatgaccaga atctatatga ttcattttca tctccattat tcattaacaa ttttcacaaa
      721 tagttccagt gtgtaactcg ttttaaggga cgctcgggca gacaatggga ctggtttgcg
      781 gtctagatcg cttgctcttc tcgactattg cttgagtctg taaagaagct ccctcttttt
      841 acaatgttat attgtggttt ttgcggattc acaaggagtg agctgacttt tcaggagtat
      901 actgataata gaaccaatat tcataggaaa taagcttgat actttcgatt tagattgaca
      961 acgcatcttg atcttgcaca catcgaaagc ttgcacaatg atgttactag ttgaaagatc
     1021 atattctcaa actcttcaat atcaatgtta gattattgaa ggaattgatc caataccca
//
LOCUS       DATLQL010000044         1074 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_719992, whole genome shotgun sequence.
ACCESSION   DATLQL010000044 DATLQL010000000
VERSION     DATLQL010000044.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1074)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1074)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1074
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_719992"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..691)
                     /locus_tag="VNB68_00455"
     CDS             complement(<1..691)
                     /locus_tag="VNB68_00455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00300 family protein"
                     /protein_id="HVD35849.1"
                     /translation="MIELSEKKFERVLEVRGHLIDSMILTRIFDKIMDLKGDFNVLEF
                     KIGKRKNELSYARLMVHGKNKKHLDQLLATLYIEGAQPVVIEEVLIKPAPEDMVMPSD
                     FYSTTNNSTQIYYSNEWIDVRNMMMDKCIAIDIKLRTAECKMIREVRKGDMIVVGERG
                     VKVLPEERPRQGIDIFQFMSSSSSSERPTLQIARKIAMDIHLTKKAGGKIIVTAGPVI
                     VHSGAAESLAKI"
     gene            complement(724..1044)
                     /locus_tag="VNB68_00460"
     CDS             complement(724..1044)
                     /locus_tag="VNB68_00460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35850.1"
                     /translation="MQYFPALKMGEKRVKAAQEILNRYVGHAMPALALKDNKDNIWEP
                     VGEENLFAVVKEDQGYMIALCDKNGIAKSIAQWFAEDKKNEILKKLKEEEMQEYFGKL
                     SLPV"
BASE COUNT          256 a          247 c          176 g          395 t
ORIGIN      
        1 ttatctttgc taatgattct gcggcaccag agtgaacaat cacgggtcca gctgttacta
       61 ttatttttcc tcctgccttc ttagtgagat gtatatccat agcgattttt cgcgctattt
      121 ggagggttgg tcgttcactg gagctagagc tgctcatgaa ttgaaatatg tctatgcctt
      181 gcctgggacg ctcttcggga agaactttca cccctcgttc cccgacaact atcatgtcgc
      241 cttttcgcac ctctcttatc attttacatt cagcagtcct taatttgata tcaattgcga
      301 tgcacttgtc catcatcata ttgcggacat ctatccattc atttgagtaa tatatctgag
      361 ttgagttgtt cgttgtactg taaaaatcac tgggcattac catatcctct ggggctggtt
      421 ttatgagtac ctcttctatc acaacaggct gtgcaccttc tatatataac gttgctaata
      481 actggtcaag atgtttcttg ttcttgccgt gaaccattag gcgtgcataa ctgagctcgt
      541 tcttcctctt tcctatttta aattcaagta cattgaaatc acctttaaga tccatgatct
      601 tatcgaagat tcttgtgagg atcatagagt caattaaatg gcccctgact tctaatactc
      661 gttcaaactt tttttccgac agttctatca cttatttagg tttaaatcac gttcaagcga
      721 taattatacg ggaagagaca attttccaaa atattcttgc atctcctcct cctttaattt
      781 ttttaatatt tcattttttt tatcctcagc gaaccattga gcaattgatt ttgcaatccc
      841 atttttatcg cacaatgcta tcatgtatcc ctgatcttcc ttcactactg caaataagtt
      901 ctcttcaccg acaggttccc atatgttgtc tttattatct tttagagcta atgccggcat
      961 tgcatggcct acatatctat ttagtatctc ttgtgccgct tttaccctct tctcacccat
     1021 cttcagagca ggaaagtatt gcatattctc gtatcaattg gctgttgcag catt
//
LOCUS       DATLQL010000045         1875 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_187769, whole genome shotgun sequence.
ACCESSION   DATLQL010000045 DATLQL010000000
VERSION     DATLQL010000045.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1875)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1875)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1875
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_187769"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(162..1133)
                     /gene="folP"
                     /locus_tag="VNB68_00465"
     CDS             complement(162..1133)
                     /gene="folP"
                     /locus_tag="VNB68_00465"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: protein motif:HMM:TIGR01496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004156 - dihydropteroate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HVD35851.1"
                     /translation="MTKTTEYDNLPTDSKGLKNHAIFVRVLILLKNVEIHKRGQVKIM
                     GVLNASPESFYKKSIAIGSESISQRAKELELEGADIIDIGTMSTAPYLDTILPARVEG
                     ERMRCAIEAVKGATNLPVSIDTPRAAVAKLSIELGADLINDVSGLVHDKKMADVVSQS
                     GLPIIIGAFGNGRPRCNFGNISETIGLLRKSIEIANLKMISDENIIVDPSIGFFRKDG
                     KNPFFTKITKREWYQRDLDIISDLEKLDALSKPVCISVSNKSFIGHVLHLNADERIIP
                     SVVFELLCFLKGASIIRTHNVREIKLALKALSVLPSTITDKLKFTSF"
     gene            1292..>1875
                     /locus_tag="VNB68_00470"
     CDS             1292..>1875
                     /locus_tag="VNB68_00470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35852.1"
                     /translation="MTRTLDRTHTVLSYVEGSLKNAIVNAGNNNKECGFIFSLLNPPV
                     PLGGNIVGLDIYVDELPIHKKSILIATSDDLVNATVLSESRPISFKPFQSARFLIIGV
                     DLDEGKRHKIVILSKLEGFEQIIVPFTFTDHVGNKKEKVLIPTNVSDETDIFSTGEDT
                     IFKNFTTPLILSGRKAYIVCSSNASLSANWTWMGA"
BASE COUNT          563 a          364 c          351 g          597 t
ORIGIN      
        1 ttttaggaat cagaagaaca tcgtcaaagg ttaatccttc tcttatagcc aatatttcct
       61 taatctatag acatttttag ggattataag cctttttgtc acagctcttc aggcgaggca
      121 gtcctgtcaa acttaataaa taattatgaa ctgaataagg atcaaaacga agtaaatttt
      181 agtttatctg ttatagtgga gggcaatacc gaaagagctt tcaaagctaa tttaatttct
      241 ctaacattgt gtgtgcgaat gattgatgca ccttttaaaa aacatagtaa ttcgaaaact
      301 actgatggaa taatcctctc atccgcatta agatgcaaga catgacctat gaatgattta
      361 tttgacaccg aaatacaaac aggcttagaa agagcatcca gtttttccag gtcagatatg
      421 atgtccaaat ccctttgata ccactcacgt tttgtaattt ttgtaaaaaa aggatttttc
      481 ccatccttcc taaagaaccc aattgaagga tcgacaataa tattctcatc tgagatcatc
      541 ttcaaattgg caatttcaat acttttcctt aataaaccaa tagtttcact gatattacca
      601 aagttacatc gtggacgccc attaccaaaa gcgccgatta ttatcggaag tcctgattgc
      661 gatacgacgt cggccatttt cttatcatgt acaagaccgc tgacatcgtt gatgagatca
      721 gctcccaatt caatggataa cttggctacc gcagctcgtg gcgtatctat agatacgggt
      781 aaatttgtag ctcccttcac agcttctatt gcacatctca ttctttctcc ctctaccctt
      841 gcaggtaata ttgtatcaag ataaggagct gtagacattg tgcctatgtc tataatatct
      901 gctccttcta attccaattc ctttgcacgc tgcgatatcg attctgaacc tattgctata
      961 gactttttgt agaatgattc tgggctggca tttagaacgc ccattatctt gacttgacct
     1021 ctcttatgga tttctacatt ctttagcaag atcaataccc gaacaaatat tgcatggttt
     1081 tttaaccctt ttgagtcagt cggaagatta tcgtattctg tagtctttgt caaggagaat
     1141 ctcgtctgcc aaatgaggag atatacgtga agttgtgttg attattgaca tcaaatagtt
     1201 tggacaaaat agttttaata gatattttgt gcttctatat gtgtgtgggc tctgaaagag
     1261 atgtttactt ctgtttagac ggagattttg aatgacaagg actcttgaca gaacacatac
     1321 ggtgttatcc tacgtagagg gtagtctgaa aaacgcaata gtgaatgccg ggaataataa
     1381 taaggaatgt ggattcattt tttcgcttct aaaccctcct gttcccctag gaggaaacat
     1441 agttggttta gatatctacg tagacgaatt gcctattcat aaaaaatcaa tcttgatagc
     1501 aacttcggat gacttggtga atgccaccgt tttatcagaa tccaggccaa tatcattcaa
     1561 accatttcag agcgcgagat ttctgataat tggtgtggac cttgatgagg gcaagagaca
     1621 caagatcgtc atattgagta agctcgaagg atttgaacag atcatagtac cattcacgtt
     1681 taccgaccat gtaggtaata aaaaagaaaa agtgcttatt cctacgaacg tgtcagatga
     1741 gactgacata ttctctactg gtgaagatac gatatttaag aacttcacca cccctttgat
     1801 cctgtctggt cggaaggctt acatagtatg ttcctcgaat gcttcccttt ctgccaattg
     1861 gacatggatg ggagc
//
LOCUS       DATLQL010000046         1322 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_542572, whole genome shotgun sequence.
ACCESSION   DATLQL010000046 DATLQL010000000
VERSION     DATLQL010000046.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1322)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1322)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1322
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_542572"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..285)
                     /locus_tag="VNB68_00475"
     CDS             complement(<1..285)
                     /locus_tag="VNB68_00475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35853.1"
                     /translation="METIGKETGRTARPHRNTEKLPMIHDANQSCDFTGYDADTLMKE
                     TARLRKLITKRGTLEILIPLCCSTNPVRYIKFRNTLKGFSSKTLAIRLKEL"
     gene            349..636
                     /locus_tag="VNB68_00480"
     CDS             349..636
                     /locus_tag="VNB68_00480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35854.1"
                     /translation="MKDQQIIKEKVRERYGKIALAGTSSEGCCTPSGCCGGSNSDAAP
                     FQIAKNIGYNTKELESIPESSILGVGCGAPVNFVDIHGGEVVADIGVADIG"
     gene            646..1143
                     /locus_tag="VNB68_00485"
     CDS             646..1143
                     /locus_tag="VNB68_00485"
                     /inference="COORDINATES: protein motif:HMM:NF025217.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HVD35855.1"
                     /translation="MDVFLSANKVKQSGRVIGIDMTVEMLEKARNNAKKNGYTNVEFK
                     KGDIERGIPIEDNSVDVVISNCVINLTVDKVAAFREINRILKSDGRIVISDLVTDKEV
                     PTHSIDSDKWCGCIDGALTKENYLACIRKAGFQDPQILEEKLYQEVDGVDSKKITSLV
                     IKAVK"
     gene            1158..>1322
                     /locus_tag="VNB68_00490"
     CDS             1158..>1322
                     /locus_tag="VNB68_00490"
                     /inference="COORDINATES: protein motif:HMM:NF013607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35856.1"
                     /translation="MKFFGKPRKPGEDKTTLFVCVENSGRSQMAEAFFQKYAPKGYSA
                     FSAGTKPSSEV"
BASE COUNT          444 a          205 c          284 g          389 t
ORIGIN      
        1 gagttctttc aatcggattg ccaaagtttt actactaaat cctttcaaag tatttctgaa
       61 tttgatatac ctaactgggt ttgtagagca gcataatggt ataagaattt caagagtgcc
      121 acgttttgta attaactttc tcaatcttgc agtctctttc ataagggtat ctgcgtcata
      181 gccagtaaaa tcacagcttt gattagcatc atggatcatt ggtaattttt ctgtgtttcg
      241 atgtggtcta gctgttcttc ccgtttcctt tcctattgtt tccataatta cacttacttt
      301 acctagcttc tcttgacaac ttaaatagtt tctcttgtaa acaatactat gaaagaccag
      361 caaattataa aggaaaaggt acgagaaaga tatggaaaaa ttgcgctagc aggaacttct
      421 tcagaaggtt gttgtacacc tagcggatgc tgcggtggca gcaattcaga tgccgcacct
      481 tttcaaattg caaaaaacat tggttataat acaaaggaat tagaatccat acctgaatcc
      541 tctattcttg gagtaggctg tggtgctcca gtaaactttg tagacatcca tggaggtgaa
      601 gtcgttgctg atattggcgt tgctgatatt gggtaaggtg gaggaattga cgtgttcttg
      661 tcagcaaata aggttaaaca atcagggagg gtaatcggta tcgatatgac agttgaaatg
      721 ctagaaaagg cacgaaataa tgcgaaaaag aatggatata caaatgtgga atttaaaaaa
      781 ggagacatag aaagagggat tcctattgaa gacaatagtg tagatgtagt tataagtaat
      841 tgtgttatta atctcacagt tgataaagta gctgcattca gggaaataaa cagaatttta
      901 aaaagtgatg gtagaatcgt aatttcggac ttggttacag ataaagaggt tccaacacat
      961 tctattgact ctgataaatg gtgcggttgt attgatggag cactaacaaa agaaaactac
     1021 ttggcatgta ttagaaaggc aggcttccaa gatccacaga tattagaaga gaaactgtat
     1081 caagaagttg atggagtaga cagtaaaaaa atcactagtt tagtaataaa ggcagtaaaa
     1141 tagtagcaaa tgagatcatg aagttctttg gtaaaccgcg aaaaccagga gaagacaaga
     1201 ctaccctctt cgtctgtgta gaaaattcgg gaagaagtca gatggctgaa gcattctttc
     1261 aaaagtatgc accaaaaggt tattcagcat tcagtgctgg aacaaaacct tcatctgaag
     1321 tt
//
LOCUS       DATLQL010000047         1071 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2496032, whole genome shotgun sequence.
ACCESSION   DATLQL010000047 DATLQL010000000
VERSION     DATLQL010000047.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1071)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1071)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1071
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2496032"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            116..457
                     /locus_tag="VNB68_00495"
     CDS             116..457
                     /locus_tag="VNB68_00495"
                     /inference="COORDINATES: protein motif:HMM:NF025774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MEDS domain-containing protein"
                     /protein_id="HVD35857.1"
                     /translation="MTPSLVDLSSKQHVMLLYETEDRCSKAAVACINDGLKDGQFCVY
                     ASVNAYDSSHLSKLSSQIINYDQNIEDGNLKIVNFRPHYESALKGDFTPFIKLKIELE
                     KILLQRINEGK"
     gene            467..>1071
                     /locus_tag="VNB68_00500"
     CDS             467..>1071
                     /locus_tag="VNB68_00500"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HVD35858.1"
                     /translation="MVFADAACYLSHNRQFRECVALEKWWQDVHTEWIKNNQDITVIC
                     PHPSSILMEDPSLDIKSQIGAQHSFTIDLEKDFPLSAVQTKQIRILIAEPEMDIRNLY
                     DAFLDSLGIEVVSVESGNKCLESAFDTDGDGYDMIILDSHLNDIGGLDLARRIHERMP
                     NQRIVLTTTLPLSRIRNVLNSTGINQEDVLLKPFKFSTLLSV"
BASE COUNT          355 a          178 c          229 g          309 t
ORIGIN      
        1 gatgatacat taaaaaggca tgagagacac atagagagtg aaagttgctg gtttgtaaga
       61 atttgcccat atataaaaaa ataataacga acattggggg taatgattag aaaaagtgac
      121 tccaagtctg gttgatttgt catccaagca gcacgtcatg ttgctttatg agactgagga
      181 cagatgtagc aaagctgcag tggcatgtat caacgatgga ttaaaggatg gccaattttg
      241 tgtatatgca tcagtaaatg cgtacgatag ttctcactta tcgaaacttt cttctcaaat
      301 tataaactat gaccaaaata ttgaggacgg taatcttaag attgtcaatt ttaggcctca
      361 ttatgaatct gccttgaagg gagatttcac tccttttatt aagctaaaaa tagaattaga
      421 aaagatattg ctacagcgca taaatgaggg aaaatgagac acgataatgg tttttgcaga
      481 cgctgcttgc tatctctctc acaatagaca atttagggaa tgtgtagcgt tagaaaaatg
      541 gtggcaagat gttcatacag aatggataaa aaataatcaa gatatcaccg taatttgccc
      601 tcatccaagt tccattctga tggaggaccc atctcttgat attaagagcc agattggtgc
      661 acagcattca tttacgattg atttggaaaa ggattttcca ctatctgcgg tacaaacaaa
      721 acagatacga atccttattg cggaaccaga aatggatatc cggaatcttt atgatgcatt
      781 tttggattcc ctaggtatag aggtagtgtc cgtagaaagt ggtaacaaat gcttggagtc
      841 cgctttcgat accgacggtg atggttatga tatgatcata ttggatagcc atttaaatga
      901 cattggcgga cttgaccttg ccagaagaat acatgaaagg atgcctaatc aaagaatcgt
      961 tctcactacg acgttgccat tgagccggat tagaaacgtc ctgaattcaa cgggaatcaa
     1021 tcaagaagat gtattgttaa agccattcaa attttctacg ctgctttcag t
//
LOCUS       DATLQL010000048         1205 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_9437, whole genome shotgun sequence.
ACCESSION   DATLQL010000048 DATLQL010000000
VERSION     DATLQL010000048.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1205)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1205)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1205
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9437"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..189
                     /locus_tag="VNB68_00505"
     CDS             <1..189
                     /locus_tag="VNB68_00505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35859.1"
                     /translation="FFTTINVSINAQSLLQPDKNYHFFSLKCGETFILLIIGVYWEYL
                     FVLERKSKHCVNPSSNPS"
     gene            complement(257..>1205)
                     /locus_tag="VNB68_00510"
     CDS             complement(257..>1205)
                     /locus_tag="VNB68_00510"
                     /inference="COORDINATES: protein motif:HMM:NF014031.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HVD35860.1"
                     /translation="GESDIVKGKGKLAWKVEFAARWAALDIRFEAFGKDIMDSVRVND
                     WVSNEILGYPHPYHVKYELFLDRSGKKISKSTGNVFTPQKWLKFGTPESIMLLFFKRI
                     VGTRIMGLEEIPSLMNEYDFYEDVYFDKIIEENKAKVAKIKGIYEYVNHLKPPKYPEA
                     HVPFEFLVQQASLFPVNERMEKVYQRLVKYNMAKEKTPGLVKRIILASNWIEDKISDT
                     RQGFDRSLKVDEKKAVSQLIEVLQSLRNSEKDPETPKMLQSKIFEIALSNFGEPKDFF
                     KLIYRLVLNTDKGPRLGNYAVDLGIERTCEILAKHLEHP"
BASE COUNT          342 a          276 c          184 g          403 t
ORIGIN      
        1 ttttttacca caattaatgt gtcaattaat gcacaatctc ttctccaacc agataaaaac
       61 tatcacttct tctctctgaa atgtggggaa acttttatcc tgcttattat cggggtatat
      121 tgggagtacc tttttgttct agaaaggaaa tcaaaacatt gtgtaaaccc ttcttcaaat
      181 cccagttaag ttatcttacc gatccatgct cgctcttgct atcagaacga tcccagcgat
      241 gacagcaatg atgaaattag ggatgctcca agtgcttagc caagatttcg caagtccttt
      301 caattcctaa atcaactgca taattgccca atcgtgggcc cttgtccgta ttcaatacaa
      361 gtctatagat caatttgaaa aaatcctttg gttccccaaa attgcttagt gcaatttcaa
      421 atattttaga ttgaagcatt ttcggggttt ccggatcctt ttcagaattc ctcaatgatt
      481 gaagtacttc tataagctga ctcacagctt tcttttcatc gacttttaga gatctatcaa
      541 atccctgacg cgtatcggaa attttatcct caatccagtt ggaagcaaga attattcttt
      601 tcaccagacc gggagtcttc tcctttgcca tattatactt tacaagacgt tggtatacct
      661 tttccatcct ttcgtttact gggaacaaag atgcttgttg gaccagaaat tcaaatggaa
      721 catgagcttc aggatacttt ggaggtttca agtgatttac gtattcgtag atgcctttta
      781 tcttcgcaac tttcgcctta ttttcctcta taatcttatc aaaataaacg tcttcataaa
      841 agtcatattc attcattaaa gagggtattt cttccaaacc cataatccgt gttcccacga
      901 ttcgcttgaa aaacaacaac attatagatt ctggtgttcc aaatttcaac catttctgag
      961 gtgtaaaaac gttccctgta gatttgctta tcttctttcc gcttcggtct aaaaacagct
     1021 catatttcac atgataagga tgaggatacc ctaagatttc gttggaaacc caatcattta
     1081 cccgtacaga atccataata tcttttccaa atgcctcaaa cctaatgtcc aacgcggccc
     1141 atcttgcagc aaattcgacc ttccacgcaa gcttgccttt tccttttacg atatcagatt
     1201 ccccc
//
LOCUS       DATLQL010000049         3972 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_542987, whole genome shotgun sequence.
ACCESSION   DATLQL010000049 DATLQL010000000
VERSION     DATLQL010000049.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3972)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3972)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3972
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_542987"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1116
                     /locus_tag="VNB68_00515"
     CDS             <1..1116
                     /locus_tag="VNB68_00515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HVD35861.1"
                     /translation="ENKNSITGSFLRGEDRVYDEKKNRMRRSAKWWITIKKARENNLK
                     SLDVSFPLGCLTTVSGVSGSGKSTLVNDILFKALSSHFYGSKERAGAHDSITGLEQVD
                     KVVGIDQSPIGRTPRSNAATYVNAFGPIREIFARTAKAKEMGYKPGRFSFNVVGGRCD
                     SCEGAGVKRIEMQFLADVFVTCEECKGKRYNSETLQVTFKSKSIADILDMTVEEGLRF
                     FSSIPSIERKLSTLYDVGLGYIKLGQPATTLSGGEAQRVKLASELSRRDTGRTVYILD
                     EPTTGLHFSDVKKLLLVLDKLVNVGNTVILIEHNLDVVGFSDWIIDLGPEGGDDGGQI
                     VTAGTPEFVAKQTNSHTATYLKPKLGLAPTIKSRNWN"
     gene            1262..2983
                     /gene="uvrC"
                     /locus_tag="VNB68_00520"
     CDS             1262..2983
                     /gene="uvrC"
                     /locus_tag="VNB68_00520"
                     /inference="COORDINATES: protein motif:HMM:TIGR00194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0009381 - excinuclease ABC activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HVD35862.1"
                     /translation="MKLAYQQNSITIKEKSRSFPSEPGVYLMKSKVGKIIYIGKAKNL
                     KKRVFSYFGENQGITEWKTSRLLRNVFDIDFMITDNEIEAFLLESNLIKQYRPVYNIE
                     LKDQQRYTYLKISDEVFPRLLVTRRSREGKFRGPPGKIFGPFVQGSSRYLTVGFLRKI
                     FKIRICNRLPKKPCLEYFIKNCDAPCVGNVTQEEYMRNVTALSDILSEKRSIDNFMAE
                     LRSDMSRASMGLQYEKAKEIRDTIIRLENLRSRQKMECVTRSASNEEFVGILHDVVRA
                     KAHVMILRRHRGVIRDRKKYEFDLVAENSLSTFLLQYYSGVPSIPHNIYVNDEPDSKI
                     TLEESLTRIASHRVEIIRISKKSGPERIQIMNLIVRNLLTYVKRGCEPALTELKDILD
                     LDRLPKIIDCFDVSNLGSSIAVGSCVRFSNGIPDKSRYRRFRIRSVKGQDDFAMIGEI
                     VTRRYRTKGGNIRESCVARKGEENDLNEPDDYPDLILIDGGRGQLNSANSALGKLKNV
                     NNISCISIAKENEVIYSDSSPEPIILSKRSDALKILQSLRDEAHRFGLAYNIKLRKPD
                     QDKIQNY"
     gene            3228..3911
                     /locus_tag="VNB68_00525"
     CDS             3228..3911
                     /locus_tag="VNB68_00525"
                     /inference="COORDINATES: protein motif:HMM:NF024724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HVD35863.1"
                     /translation="MFDPEFLRRENLITFLQESQVRVDDFVTAALDIASEVHGQVRRE
                     DKQSPFLETHIWPVAKHVVDHYLNAKRNITSVEVASAILHDIMEDNEKILDLYRTKDY
                     GFDAYLRYRFGNKIYNMCIDLKIKPLENFPGKTNEDRQLARFHDYCKILSSADYDVKA
                     IKLADRINNMNFVSKLNTQKDAVIAAKIKRYLREAEDFYLAYALLNPRMEDFYESLRS
                     SYDKLKETG"
BASE COUNT         1343 a          690 c          877 g         1062 t
ORIGIN      
        1 gagaacaaaa attctataac tggctcattt ttgagaggcg aggacagggt atatgacgag
       61 aagaagaaca ggatgagaag gagcgcaaaa tggtggatta ccataaagaa ggctcgagaa
      121 aataatctca aatcactaga cgtgagtttt cctcttggct gcctcaccac cgtgagtggc
      181 gtttcggggt caggcaaatc cacattggta aatgatatat tgtttaaggc tctgtcaagc
      241 catttctatg gctcaaagga gagagctgga gcacatgata gcataacggg ccttgaacaa
      301 gtggacaagg tagtagggat agaccagtca cctattggcc gcacaccccg atccaacgcg
      361 gcaacttatg tgaatgcttt tggtcctata agagagatct ttgctaggac tgcaaaagct
      421 aaagagatgg ggtataagcc tggaaggttc tcctttaatg ttgtgggtgg acgatgtgat
      481 tcatgcgaag gagcaggagt caagaggata gaaatgcagt ttcttgcaga tgtatttgta
      541 acctgcgagg agtgcaaagg aaaacgatac aactctgaaa ctcttcaagt gacatttaag
      601 tccaaaagta tcgcagacat acttgatatg actgtggaag aagggcttcg gttcttttcc
      661 agcataccct caatagaaag gaagttgagc actttatacg atgttggttt aggatacata
      721 aaacttggtc agcctgcaac aacgctatca ggcggagaag cccagagggt taaactggcc
      781 tcagaactct cccgaaggga tacaggaaga acagtctaca tacttgacga acctacaaca
      841 ggtctccatt tttcagatgt caagaagcta ttacttgtct tagacaaact agtaaatgtg
      901 ggtaacacag tcatactaat agaacacaat cttgacgtag ttggtttttc agactggata
      961 atagacctgg gaccagaagg aggcgatgat ggaggacaga tagtaactgc aggtacacct
     1021 gaatttgttg ctaaacaaac taacagtcat acggccacat atctaaagcc aaagctggga
     1081 ttagctccta cgatcaaaag taggaactgg aactagaata gcgcaattgt gtcaaggaag
     1141 caaaacttct caattgcatt gccaaggaca aattatcaag tagagattat ggtggatttg
     1201 gatcgttaat ttatttgtag gacgattgat gagatgattg acgaatagaa gctcggggga
     1261 tatgaaattg gcataccaac aaaattccat aactattaaa gaaaaatcaa ggagcttccc
     1321 gtctgagcca ggagtctact tgatgaagag caaggtggga aaaattatct atatcggaaa
     1381 ggcaaaaaat cttaaaaagc gtgtattctc ttattttggc gaaaaccaag gtataactga
     1441 atggaagaca tcccgtcttt tacgaaatgt ctttgatata gatttcatga tcacagacaa
     1501 cgagatagag gcgttccttt tggaatctaa cttgataaag caatacagac ctgtttacaa
     1561 tatagagcta aaggatcagc agcggtatac ttatctaaag atttctgatg aagtattccc
     1621 aagacttctg gtcaccagaa gaagtagaga aggaaagttt agaggccctc ctggaaaaat
     1681 atttggacct tttgtacagg gaagttctag atacttgacc gtcggattcc tgaggaaaat
     1741 atttaaaatt agaatatgca acaggcttcc aaagaagcct tgtctagaat atttcataaa
     1801 gaattgtgat gctccttgtg tgggtaatgt tactcaagaa gaatatatga gaaacgttac
     1861 cgcgctttca gatattcttt ctgaaaagag gagcatagat aattttatgg cggaattgcg
     1921 aagtgacatg tcccgagctt cgatgggcct ccagtatgaa aaagcaaaag agataaggga
     1981 caccattatc agactggaaa accttagatc tagacaaaaa atggaatgtg taacaagatc
     2041 tgcttcaaat gaagaatttg taggcatatt acatgacgtc gtacgagcca aggcccatgt
     2101 aatgattctg cgacgacatc gcggggttat aagagatcgg aaaaaatatg aatttgactt
     2161 agttgccgag aactcacttt cgactttctt attgcagtac tattctggtg taccgtcaat
     2221 cccacacaat atttacgtga acgatgagcc tgattctaag attactctcg aagaatcatt
     2281 aacacggata gcatctcaca gagtagaaat aattcgtata tccaagaaga gtgggccaga
     2341 aagaattcag ataatgaatc ttatagtcag aaatttgttg acgtacgtaa aaaggggatg
     2401 tgagcctgcc ttgactgaat taaaagatat actagatttg gacagactcc ctaaaataat
     2461 cgattgtttt gatgtttcga atcttggttc ttcaatagcc gttggttcat gtgttagatt
     2521 ttcaaacggt atcccagaca agtctcgata ccgtaggttt agaataagat cggtcaaagg
     2581 acaagatgat ttcgcgatga taggtgagat tgtaacacgg agatatagaa caaagggagg
     2641 aaacataaga gaaagttgtg tggcaagaaa aggagaagaa aatgatctaa atgaaccaga
     2701 cgattaccca gacttgatct tgattgatgg cgggcgtgga cagcttaata gtgccaattc
     2761 agcattaggt aaactgaaga atgtaaataa tatatcgtgc atttcgattg ccaaggagaa
     2821 tgaggtaata tattcagatt cgtcgccaga gccgataatt ctttccaaaa ggagtgacgc
     2881 gttaaaaata ctgcagtcat tgagagatga agcccataga tttgggcttg catataatat
     2941 taaacttaga aaaccggacc aagataagat acagaattat taatcatttg aggacgagaa
     3001 ttgaaaattg gaagattgag tcccattttt ttcttttttc tatgactgtc gtgtatgacc
     3061 agttcgcatt ggaaaattcc agaagcaaga cctacaaaat ttattacagg attccatttt
     3121 tttgctccta tgacctacca ctagctaaga gcaccactcc tcttcagcga tattaaaaat
     3181 ctgatcaaat ggaaaatctt ttctttaaca ttcgctgata gaatacaatg tttgatcctg
     3241 aattcctcag gcgagaaaat cttattactt ttcttcaaga atctcaagtc agagtcgatg
     3301 attttgtaac tgctgctcta gatattgcct cagaagtgca cggacaagtt agaagagagg
     3361 ataagcagtc tcctttcctt gaaacacata tctggccggt agcaaagcat gtagtagatc
     3421 actatctgaa tgcaaaaaga aacattacaa gtgttgaagt cgcatctgca atactgcatg
     3481 atataatgga agacaatgag aaaatccttg atttgtatcg taccaaggat tatggttttg
     3541 acgcctatct ccgatataga ttcggaaata agatctataa catgtgtatt gatctgaaga
     3601 taaaaccact tgaaaacttc ccgggcaaaa cgaatgaaga tcgtcagtta gccagattcc
     3661 acgattattg caagattctc tcatcagcag attatgacgt aaaggcaata aaacttgcag
     3721 acagaataaa taatatgaac tttgtatcca aattgaacac ccagaaagat gcggtgattg
     3781 cagccaagat caagagatat ctacgtgagg cagaagattt ctacttggct tatgcattgt
     3841 taaatcctcg catggaagat ttttacgaga gcttaagatc atcatatgac aaattgaaag
     3901 agactggata actgacattt tctgcacatt tctcaaatag tttggaatag taaactgaac
     3961 tgtttccaac cg
//
LOCUS       DATLQL010000050         1853 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_9617, whole genome shotgun sequence.
ACCESSION   DATLQL010000050 DATLQL010000000
VERSION     DATLQL010000050.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1853)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1853)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1853
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9617"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1262)
                     /gene="gatA"
                     /locus_tag="VNB68_00530"
     CDS             complement(<1..1262)
                     /gene="gatA"
                     /locus_tag="VNB68_00530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HVD35864.1"
                     /translation="MSNLYDLGALEAHRGINQGDFTAEEYVWSIIERIERVDGKVHAF
                     ITLNKENALDDAREIDKKIRTKEDAGSLAGVTVGIKDNISTRGLKTTCASKTLENYVP
                     PYDATVVERLKDHGAIVIGKLNLDEFGMGSTTEYSRYGPTHNPWNLDYVPGGSSGGSG
                     AAVSSRECTVSLGSDTGGSVRCPASFCSVVGLKPTYGSVSRFGLISYANSLEQIGPIC
                     RTVEDVVTVMNAISGHDPNDNTCFLLRSNVPYLHIKQDRAPSSIAIVKELIDGCDPAV
                     SRTIYSALDKFKEFGWKCTEISLKSVNYALPSYYTIAMAEASSNLARYDNIRYGFSFP
                     VEGFEWNTYISNVRSNFGEEVKRRILIGSYVLSSGYYSKYYLKARQLRSLLRQELLSN
                     FAKYDLLVGPTMPVLPFRIGEKIDDPLK"
     gene            complement(1264..1536)
                     /gene="gatC"
                     /locus_tag="VNB68_00535"
     CDS             complement(1264..1536)
                     /gene="gatC"
                     /locus_tag="VNB68_00535"
                     /inference="COORDINATES: protein motif:HMM:TIGR00135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HVD35865.1"
                     /translation="MVSKDELRHLSWISRINLSEEEIETFHHQLDDTIKYIDVLETFD
                     SENLTLDYLEVDFSNLREDKTIAFTRDLIPKSSLAQEGYVKGPKMI"
     gene            complement(1586..>1853)
                     /locus_tag="VNB68_00540"
     CDS             complement(1586..>1853)
                     /locus_tag="VNB68_00540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amino acid--tRNA ligase-related protein"
                     /protein_id="HVD35866.1"
                     /translation="ESFDLMYKSLEVSSGSTRVSRKEELVERMKKQGLNIGAFDYHLK
                     VFDYGVPPHAGFGVGMERLIMSLCGVENIRDVVLYPRDIDRLSP"
BASE COUNT          532 a          424 c          308 g          589 t
ORIGIN      
        1 atttttaatg ggtcatcaat tttttcacct attctaaaag gaagtactgg cattgtaggt
       61 ccaactaata aatcatattt tgcgaaattt gaaagtagtt cttgtctaag taatgatctg
      121 agttgacgtg ccttcaagta atatttacta tagtaacctg atgataaaac gtatgatcca
      181 atcaaaattc tcctctttac ttcttcgcca aaattacttc ttacattact gatgtaggta
      241 ttccattcaa atccttccac agggaatgaa aaaccatacc ttatgttatc atacctagca
      301 aggttgctac tcgcttctgc catggctatt gtataataag aagggagcgc gtagtttaca
      361 ctttttagag atatttcagt gcatttccat ccaaattctt tgaatttgtc aagtgcagaa
      421 tatatggtcc ttgacaccgc tggatcacac ccatcaatca attcttttac gatagcaatt
      481 gacgaggggg ctctatcttg tttgatatgc aagtaaggaa cattagatcg taataaaaaa
      541 caagtattgt cattgggatc atgacccgat atagcattca ttaccgtcac gacatcctcg
      601 actgttctac aaatgggacc aatttgctcc aggctattgg cataggatat aagtccgaat
      661 ctgctcacgc tgccataagt aggtttgaga cccactacag aacagaagct ggcaggacat
      721 cttaccgatc ctccggtatc ggagcccaat gatacggtgc attcacgaga agaaactgct
      781 gctccgcttc cgccagacga cccgcccggt acataatcta ggttccaagg attatgagta
      841 ggcccatatc ggctgtactc tgttgtcgat cccatcccaa attcatccaa atttaatttt
      901 ccgattacta tggctccatg atccttcaat cgctctacca ctgttgcatc atacggcggc
      961 acataattct caagcgtctt agacgcgcat gtggtcttca agccacgtgt acttatgtta
     1021 tctttaattc cgacagttac tcctgcaaga gatcctgcat cttctttggt acgaatcttt
     1081 ttatcaattt ctcgggcatc atccaatgca ttttctttgt taagagtgat gaatgcatgt
     1141 acctttccgt cgactctctc aattctctca atgatggacc agacatattc ttcagccgta
     1201 aaatcacctt gattaatacc tctatgagct tccaacgcgc caaggtcgta caaatttgac
     1261 atgttatatc atcttaggcc cttttacata gccttcctgc gccagggaag attttggaat
     1321 caaatccctt gtaaatgcaa tggtcttgtc ctctcttaaa ttggagaaat caacctctag
     1381 ataatccagg gtcaaatttt ctgaatcaaa tgtttcgaga acatcgatat actttatggt
     1441 atcatccaat tggtgatgaa atgtttcaat ctcttcctca gatagattta tccgtgaaat
     1501 ccagcttaaa tgtcttaatt catcttttga aaccaacccc gctcaccata ttaccataga
     1561 taaaatcaag tccttcctta acattttagg gggatagcct atctatatca cgaggatata
     1621 gaacaacatc tctaatattc tcgactccac agagactcat tattagacgt tccatgccaa
     1681 cgccaaaacc tgcatgaggt ggaactccat aatcaaatac ctttagatga tagtcaaatg
     1741 cacctatatt tagcccttgt ttcttcattc tttccaccaa ttcttctttt cgactaactc
     1801 ttgtacttcc tgatgatact tcaagagatt tgtacattag atcaaaagat tca
//
LOCUS       DATLQL010000051         1964 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1964298, whole genome shotgun sequence.
ACCESSION   DATLQL010000051 DATLQL010000000
VERSION     DATLQL010000051.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1964)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1964)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1964
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1964298"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1826
                     /locus_tag="VNB68_00545"
     CDS             <1..1826
                     /locus_tag="VNB68_00545"
                     /inference="COORDINATES: protein motif:HMM:NF009945.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ribosome biogenesis/translation initiation
                     ATPase RLI"
                     /protein_id="HVD35867.1"
                     /translation="NFSIMMETHSTSTHRVAVLDEDLCKPKKCGLECIVYCPVNKTGG
                     ECIIQREDDGKAVISEDLCTGCGICVKKCPFEAIVIVNLAKELGDHKIHQYGINSFRL
                     YHLPTPKKGTVIGLLGRNGMGKSTIINILSGNIRPNLGKYDNNQLAWDDILDNFRGTE
                     LKSHFEKISSGTLRVSIKPQLVYLIPKTFKGTARELLKKYDERHVFDTLVNDLGLTNI
                     LDNSVSQLSGGELQRLAVAVAFSKDADYYFFDEPSSYNDIYQRLQVARVITRLADEGK
                     SVMVVEHDLTLLDYLSDYIHILYGEPGAYGIVSPLQSIKVGINNFLEGFIPSENIRFR
                     DRSYKFDNSGQNEDVVLEKPLAKYSNLTKSFPSFKLSANSGQIREGEIVGLVGANALG
                     KTTLMKMIAGIEKPDSGNIEMSAKISYKPQYLQQDHDGDTRSLLSTAYQAPIEGSAVE
                     NHILIPMGMKRLYDKNINTLSGGELQKVAVCATLVRPANIYALDEPSAFLDVEDRISL
                     AKFLHRFVKAEGKSAMIIDHDMQLIDLVSDSLVIFTGTPAIEGIAHNPMNKEDGMNQF
                     LRTLAITYRKDETTGRPRINKMGGRLDRKQKDSGDYYSRRV"
BASE COUNT          662 a          348 c          417 g          537 t
ORIGIN      
        1 acaatttttc aataatgatg gaaacccatt ctacctctac acatcgtgta gcggtattag
       61 acgaagacct atgtaaacca aagaagtgtg gtctagaatg cattgtctac tgtccagtaa
      121 acaagactgg aggtgaatgt ataattcaga gagaagatga cggaaaggcg gttatttcag
      181 aagatttatg cacaggatgc ggaatttgtg tgaagaaatg tccctttgaa gctattgtaa
      241 tagttaacct tgcaaaggaa cttggagatc ataagattca tcaatacggt atcaattcgt
      301 tcagattata ccacttacct acacccaaga aaggtactgt gattggtctc ttaggaagga
      361 atggtatggg taagtctaca ataataaata ttctatcagg aaacattaga cccaatttag
      421 gaaaatatga taacaaccaa ttagcgtggg atgatattct agataatttt cgtggtacag
      481 aactaaaatc tcattttgaa aaaatttctt cgggaacctt aagagtatca attaagcccc
      541 aacttgttta cttaattccc aaaactttta aaggaactgc gcgcgaactt ttgaaaaaat
      601 acgatgaaag acatgttttt gatacgcttg taaacgattt gggattgaca aacatactag
      661 ataattcagt atcccagttg agtggaggag aattacaacg cttggcagta gcggtagcat
      721 ttagcaaaga tgcagattat tatttcttcg acgaaccatc gtcatataat gatatttacc
      781 aacgcttgca agtagcacgg gtcatcacac ggctagccga tgaaggcaag agcgttatgg
      841 tagttgaaca tgatttgact ttgctggact atctctctga ttatatccat atattgtatg
      901 gtgaacctgg tgcatatgga atcgtatccc cgctgcaaag cattaaggta ggaatcaata
      961 attttcttga aggctttatc ccatcggaaa atatcagatt tcgtgataga tcatacaagt
     1021 ttgacaactc aggacaaaat gaggatgtcg tgcttgaaaa accactcgcc aaatattcaa
     1081 atttaacgaa atctttccct tccttcaaat taagtgccaa ttctggacaa atccgagaag
     1141 gagagattgt tggattggtc ggagcgaatg cactgggtaa aacgactttg atgaagatga
     1201 tcgcagggat tgaaaagcct gattcaggaa atattgagat gagtgccaag atttcatata
     1261 agccccagta ccttcaacaa gatcacgatg gcgacacaag gtcgctcctt tcaactgcct
     1321 atcaggcacc catagaaggt tctgcggttg aaaatcacat tctcattcct atgggaatga
     1381 aaaggttata cgacaagaac atcaatactc tcagtggagg agaactgcag aaggtagccg
     1441 tatgtgccac acttgttaga cctgcaaata tatatgctct tgatgagccc tctgcatttc
     1501 tagatgtgga agatagaatc tctttagcaa agtttctaca tcgtttcgtc aaagcggaag
     1561 gaaaatcggc aatgatcata gatcatgaca tgcaactgat agacttagtt tctgactccc
     1621 tcgttatatt tactggaaca ccagcaatag agggcattgc acataacccg atgaacaagg
     1681 aggatggtat gaatcagttc ttaagaacac ttgctataac atatagaaaa gatgaaacca
     1741 ccggcagacc aagaattaat aaaatgggtg gcagattaga tagaaaacaa aaagattctg
     1801 gagattacta cagtaggagg gtttaatccg gtgctgttat gcccaggatg ctaagagaag
     1861 cgctgaaaca acttttggac caagatgaac tagaagaagt ttgttctgcg tttgacacaa
     1921 ttgggggaat aataataatt aagattcctg agtcattaaa tcaa
//
LOCUS       DATLQL010000052         1390 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1785053, whole genome shotgun sequence.
ACCESSION   DATLQL010000052 DATLQL010000000
VERSION     DATLQL010000052.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1390)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1390)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1390
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1785053"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            566..856
                     /locus_tag="VNB68_00550"
     CDS             566..856
                     /locus_tag="VNB68_00550"
                     /inference="COORDINATES: protein motif:HMM:NF015632.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0147 family protein"
                     /protein_id="HVD35868.1"
                     /translation="MTSTRKELKQKENQERLANAAASLDSITRNSNIQRNIRNMVKEV
                     YITLKDEKSGSISVRAANAISMLDTITQNPQMQSHIRTMLWQVVSSLESIRE"
     gene            complement(1077..>1390)
                     /locus_tag="VNB68_00555"
     CDS             complement(1077..>1390)
                     /locus_tag="VNB68_00555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase RNA specificity
                     domain-containing protein"
                     /protein_id="HVD35869.1"
                     /translation="VSYQINGTLGRRVIDGTMNEVSMLDKTGKVKVIPIKCQTQKIDG
                     FSGHSDFNQILSFVSRIRPKRVLVNHGERSKSENIASAIYYRSRIRTSVPDHREIVRL
                     R"
BASE COUNT          441 a          287 c          251 g          411 t
ORIGIN      
        1 caggactaat cttcgatttc cttcataaac cttctagcta gcgtgtatta gaatgagatc
       61 ccatatcaac caaatagggt caatcactat tgataaagac ccatcgaata tgatcaataa
      121 caattgttcc tcagctatca ccctagcctc tttaacgacg cattaatggc tgacctaata
      181 ctttatcgag tgaaatcatc aaactttcca tagcgaaatg acggaattgc ttttttcaga
      241 ctgcaagttt aaggtcatca tttgcaaatc atgctctagc ttggatttga tagataaatg
      301 ggagctctcg ataatgtgct cttctattga gacatctttt atagttatct cgcatatatt
      361 acagcggatt ctctgttttc ccactgtcct tttcagttca ctcacgtgtt acttgtataa
      421 agacctatga tataggagct cttcgcacat aactttacac ttacgagcgt tactcgtata
      481 acgccatcga tagaaagaag ataataaaaa cattcaaaag cccctactga ttaatccagt
      541 tgttatcaat tagcgagggg tgaacttgac ttcaacaagg aaggagctaa aacaaaaaga
      601 gaatcaagag cgcttggcca acgcagcggc gtctttagat tctataacaa ggaacagcaa
      661 tattcaaaga aatatcagaa acatggtaaa agaggtatac attacattaa aagatgaaaa
      721 aagcggaagt atttccgtga gagccgcgaa cgccatcagc atgctggata caataacgca
      781 aaatccacaa atgcaatctc atataaggac aatgctttgg caggtagttt cgagcctaga
      841 gagcataagg gaatagaaca gaaaatctac gggacgtctg tatttttcac aggtttcaag
      901 ggaggcggta gtttctctag tttgtgattg ggattagcta ggtagtgtct ggaggcacct
      961 tctccactaa gtacaatatt gcaattaaca catctatatc gtattgccaa gtctagctcc
     1021 ctttttataa tgtatacaag gctaaaaagt ctatggaaac aagcctgaag ataaggtcat
     1081 cgtaatctaa caatttctcg atggtcaggc acgctagttc ttattcttga ccgataatat
     1141 atcgcgctgg caatattttc tgactttgac ctttcaccgt ggtttactag cactcgctta
     1201 ggtcttattc ttgaaacaaa gctcagaatc tgattaaaat cgctatgtcc actaaaacca
     1261 tcaatcttct gcgtttggca cttaataggt atcaccttaa ctttgccagt cttatccaac
     1321 atacttactt cattcattgt accgtctata acacgcctac ctaatgttcc gttgatttga
     1381 taagagacaa
//
LOCUS       DATLQL010000053         1688 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2319386, whole genome shotgun sequence.
ACCESSION   DATLQL010000053 DATLQL010000000
VERSION     DATLQL010000053.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1688)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1688)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1688
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2319386"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..323)
                     /locus_tag="VNB68_00560"
     CDS             complement(<1..323)
                     /locus_tag="VNB68_00560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35870.1"
                     /translation="MKGYRKLTLITAMLGLVILVPFVVGYAYVNSLIGLPILGLFFGW
                     LLLYVFLLLIVNIASLYIAFRIKNTKIAGILLIVCGVVILASTNYFGIPSFVLFCIAG
                     VLALR"
     gene            539..1513
                     /locus_tag="VNB68_00565"
     CDS             539..1513
                     /locus_tag="VNB68_00565"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HVD35871.1"
                     /translation="MKPIIRALKEVDLDEADRISRIAFGTFLGLLDPGTFYGDADFVR
                     TRFRADPSLSLAAEMYGQLVGSNFVANWGSVGFFGPLTVRPDLWDKGIGKNLLNKTLE
                     IFEILGTKHIGLFTFSHSPKHIHFYQKYDFWPRFLTNVMSKPVDSVSKTKEHEAPTPT
                     NWFKYSDVPHDRKSTILGNCSSLTNSIYRGLDLRNEIVSITTQKLGEIILLKANAKND
                     LGGLAVCHCGPRTEAGSGTCYVKFGMAANEGQSAPDNFDHLLEACERYAASQGLITLL
                     AGVNIGNLGAYRKMISKGFKTEYQGVMMTKNNDPGYHKEDVYAIDDWR"
BASE COUNT          567 a          318 c          330 g          473 t
ORIGIN      
        1 tctcttaatg caagtactcc cgcaatacaa aataagacaa acgagggaat tccgaagtaa
       61 tttgtcgaag cgagtataac aaccccgcat actattaaca ggataccagc aatcttcgta
      121 ttctttattc taaaggcaat atagagactg gcaatattta caataaggag aagaaataca
      181 taaagtaata gccagccaaa aaagagacct aaaattggga gtccaattaa actattgaca
      241 tatgcgtagc ctactacgaa cggtactaga ataaccaatc ctagcattgc agtaatcagt
      301 gtaagttttc gatatccctt cactttatcc tcaaacctta taccataata attacttgtc
      361 tctcttttag ttacctcatg gatatgtgat caaggcaata ccaactttcc tatgaatgaa
      421 gatctttaag agctataaag tccaatcaca tcgatattaa tgccgattca tattgatata
      481 ctcttcaaga ggagatttct caaaacgtta gtaaagcaga aacccatact tactaacaat
      541 gaaacctata atccgagcgc tcaaagaggt tgatctagac gaagcggata gaatctctag
      601 aattgctttt ggtacatttc ttggattact cgatccaggg actttttatg gggatgcaga
      661 ttttgtcagg acgcgtttca gagcagatcc ctcattatcg ttggcagctg agatgtatgg
      721 gcaattggta ggatcgaatt ttgttgcgaa ctggggtagt gtgggatttt ttggaccgct
      781 cacggtacgt ccagacttgt gggataaagg gatcggaaaa aatctgctga ataagacatt
      841 ggaaatattt gaaatactgg gaacaaaaca tatcgggtta ttcacatttt ctcacagtcc
      901 taaacatatc catttctatc aaaaatatga cttctggcct aggtttctca ctaacgtgat
      961 gtcaaaacct gttgactcag ttagcaaaac aaaagaacat gaagctccga ctccgacaaa
     1021 ttggttcaaa tattccgacg tcccacatga cagaaaatca acaatcctcg ggaattgtag
     1081 ttcgctcact aattcaatct atagaggttt ggatcttagg aacgaaatag tctctatcac
     1141 tacgcagaag cttggtgaaa ttatccttct taaggctaac gcaaagaatg atttaggagg
     1201 tctagcggta tgtcactgcg gaccaagaac ggaagcggga agtggtacat gctatgtcaa
     1261 atttggaatg gcagcaaatg aaggccaatc cgccccagat aattttgacc atcttctcga
     1321 agcttgcgaa cgctatgctg catcgcaagg actaataaca cttctcgctg gcgtcaatat
     1381 tggtaacttg ggtgcataca gaaaaatgat atcgaagggt ttcaagacag aatatcaagg
     1441 agttatgatg actaaaaata atgatccagg ttaccataaa gaagatgtct atgcaataga
     1501 cgattggaga taattcaagt atgaaacagc gcagttttct accataaaag tagacttcac
     1561 gctaatgtaa ttaattataa atggtataat cttaatcaat taacgcaacc aaatgtctca
     1621 gggagttgtc tttactgata ttgatggtac actaatagat attttcactg gtcaatttga
     1681 tgtgacaa
//
LOCUS       DATLQL010000054         1115 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_189004, whole genome shotgun sequence.
ACCESSION   DATLQL010000054 DATLQL010000000
VERSION     DATLQL010000054.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1115)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1115)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1115
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_189004"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..560)
                     /locus_tag="VNB68_00570"
     CDS             complement(<1..560)
                     /locus_tag="VNB68_00570"
                     /inference="COORDINATES: protein motif:HMM:NF021287.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAC2 family protein"
                     /protein_id="HVD35872.1"
                     /translation="MTSSIEIKKWKKKDSNNKEISLKGGIVLDGLPSSTGLVNAIASE
                     CLIRSTGTDLVAFLDSPDFPLISVVNNFVPRYPVRIYVNESLKVAFFVSDINIDEPLQ
                     RDVAKAILNWTRENECRLIISAQGILSSSSSSTPRSPRTGNGNKEDSEQEYSDEDDTT
                     KSTTPIALPPPLPTEIYAVTSTESSA"
BASE COUNT          328 a          225 c          217 g          345 t
ORIGIN      
        1 tttgctgaag actcagtact cgttacggca tagatttctg taggaagagg agggggaaga
       61 gcaataggag tggtagattt agtagtgtca tcctcatcac tatactcctg ttccgaatct
      121 tctttgtttc cattaccagt acgaggcgaa cgaggagtag aagaagacga tgatgatagt
      181 atgccttgag cactaatgat tagtctacac tcattctccc tagtccaatt aagaattgcc
      241 tttgctacat ccctttgtaa tggctcgtca atattaatgt cagaaacaaa gaatgctact
      301 ttcagactct catttacgta aattcttaca ggatatcgag gaacaaaatt atttactaca
      361 gatattagtg gaaagtctgg cgagtctaaa aaggctacaa gatctgttcc tgttgaacgt
      421 attaaacatt ctgatgcaat agcgttaact aggccagtgc tacttggtag accatctaaa
      481 actatacctc ctttgaggct tatctcttta ttattactat cctttttttt ccatttcttg
      541 atttctattg atgacgtcaa atatggttat caacccctga agacatataa tgataaatat
      601 tatagcacaa ttcgtattat taaaggtgaa cgtatggagc ggttccggct gctcaagaat
      661 aatccaacga gagctagtac tgcaatggag acagaatggt cacacacagt tagtattggt
      721 gatgctggta ttcgagtgtt tttctctcca gagccaggac ggcctcggaa tttccgatag
      781 cctctccata gaatctattg tacattaact attgttaaat agagttaaag ggtcaccccg
      841 cttggctcgc atttacttca gaattaagac tttatgagca ttatcgtgcc cgagcacgtt
      901 ttattgcctc tcgactcgga gatgaatcag cctcggcatc tggtctcgag ctgcaggagg
      961 ctaaaaagca gaagaaacaa ttagaagaga aaagttagcc gtctagcatt ttcaataact
     1021 tatctaacat ttctgcatat agtttatgct ccaacgcttc aatccaattt cctcgctctt
     1081 cacaagattt agcctcgctt aattcagatc taaat
//
LOCUS       DATLQL010000055         1672 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_10433, whole genome shotgun sequence.
ACCESSION   DATLQL010000055 DATLQL010000000
VERSION     DATLQL010000055.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1672)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1672)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1672
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10433"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..564
                     /locus_tag="VNB68_00575"
     CDS             <1..564
                     /locus_tag="VNB68_00575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TGS domain-containing protein"
                     /protein_id="HVD35873.1"
                     /translation="EKTHAGGLSVQTQVPIKMSISLAKEILRIHGIHNGRLIIREPNL
                     TDEQLIDVLSGNTLYLQSLKVINKIDLVDKRFIKDLVPTIGGDFVPISADKNMNIEFL
                     KRAIYRKLDFIRIFLKPRGGEADYEEPLILKRGCIISDVCDKIHRNFIKDFRYAYVWG
                     KSVKFDGQKVGVDHKLADNDILTIVKR"
     gene            673..>1672
                     /locus_tag="VNB68_00580"
     CDS             673..>1672
                     /locus_tag="VNB68_00580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HVD35874.1"
                     /translation="MKYPKVVLSADRTLMSPYRGISLASFFGCAPAIDLNRSHDSLVY
                     KVLRNQVTPKLLFDFICNPISQTGGRADFAPYGLRKIEASLIRDGYSREDVVVAHPEY
                     IEQFIGPETEVVGTYEMDPLGMGPVTMTFTYGRKQTSYDEFYNRELHMRINRAKERTG
                     SKAKVVAGASGTWQYNYDPGKIEEYGLYGIIEGELGGIGPELDGAGSKFFDALIGGEL
                     ETANPFKKSPFKVEIKEFTREDKTYHGRFIHYWDEPSVDEIPLIVNPSMHGMIEVMRG
                     CGRGCKFCDVTLRPLRYYPVEKVIKEIEINMKYGGLNNAWVHSDDIFVYGLNPRTTK"
BASE COUNT          565 a          279 c          387 g          441 t
ORIGIN      
        1 gaaaagactc atgctggagg gctttccgtg cagactcaag taccaataaa aatgtcgatt
       61 tcgttggcta aagaaatact acgaattcat ggaatacata acggtagatt gattatcagg
      121 gaaccgaacc taactgatga gcagttgatt gacgtgttat caggaaatac gctctatttg
      181 caatctttaa aagttattaa caaaattgat ttggtagaca aaaggttcat caaagacctt
      241 gtcccaacaa taggaggcga ttttgttcct atttcagcag ataaaaacat gaacatagaa
      301 tttctaaaac gagcaattta tcgcaaatta gacttcataa gaattttcct aaaacctaga
      361 ggaggcgagg ctgattatga agagccactc atattgaaac gtggctgtat tattagtgat
      421 gtctgtgata agatacatag aaattttatt aaagatttca gatatgcata tgtgtggggg
      481 aaaagtgtaa aatttgacgg acagaaagtt ggagtggatc ataaattagc agacaatgac
      541 atcttaacga tagtaaaaag atagtcaaaa taaaaccaga aaagtgacat tccgccaacg
      601 ttagcgcatc aggctgtgga aaacttaaaa tctatgcagg atgacacggt agatattagt
      661 gaattctagt taatgaaata tcccaaagtt gtgttgagcg cagacaggac tcttatgtct
      721 ccttataggg gaatatcact tgcatcgttt tttggatgcg ctccagcaat tgaccttaac
      781 agatcgcatg attctcttgt ttacaaagtg ttgcgcaatc aagttactcc taaactattg
      841 tttgatttta tatgcaatcc catatcgcaa acgggaggtc gcgcagattt cgctccatat
      901 ggtctaagaa aaatagaagc atcattaatc agagacggct acagcagaga agacgtagta
      961 gtagctcatc cagaatatat tgaacagttt atcggacccg aaaccgaagt ggttgggacg
     1021 tacgagatgg atccgcttgg aatgggccca gtaaccatga ctttcacata cggacggaag
     1081 caaacctcat atgacgaatt ttacaaccgg gagcttcaca tgagaattaa ccgagccaag
     1141 gaaagaacag gaagtaaggc aaaggttgtg gcaggggctt ctggaacatg gcagtataac
     1201 tatgaccctg gtaagatcga agagtacggt ttgtatggga ttatagaagg agaactaggt
     1261 ggtattggac cagaattaga tggtgcaggt tcaaaattct ttgatgcttt aatcggtgga
     1321 gaactagaaa ctgcaaaccc gtttaagaaa agtcctttta aggttgagat aaaagagttc
     1381 actagggagg acaagactta tcatggaaga ttcatccatt actgggatga accctctgta
     1441 gatgagatcc ctctcattgt aaatcccagt atgcatggca tgattgaagt tatgcgaggg
     1501 tgtggcaggg ggtgcaaatt ctgtgacgtg acgcttaggc ccttgaggta ctatccagtt
     1561 gaaaaagtca taaaggaaat cgaaattaac atgaaatacg gaggactcaa taacgcgtgg
     1621 gtgcatagtg atgacatttt tgtatatgga ttgaatccaa gaaccacaaa aa
//
LOCUS       DATLQL010000056         2122 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_721650, whole genome shotgun sequence.
ACCESSION   DATLQL010000056 DATLQL010000000
VERSION     DATLQL010000056.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2122)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2122)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2122
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_721650"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(273..503)
                     /locus_tag="VNB68_00585"
     CDS             complement(273..503)
                     /locus_tag="VNB68_00585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC ligand binding domain-containing
                     protein"
                     /protein_id="HVD35875.1"
                     /translation="MPKAFVLMNAELGSEDSIVSELKTIDGVKEVYQVYGVYDIVAQV
                     EAEAMEKVKETITWKLRKLNGVKSTLTMIVMD"
     gene            complement(634..1443)
                     /locus_tag="VNB68_00590"
     CDS             complement(634..1443)
                     /locus_tag="VNB68_00590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HVD35876.1"
                     /translation="MDSEPEKGAGSLFFELAGNLRLSMLSKFRERPYRLSHLATELNA
                     TIQETHRNITRFIEAGMVLKDSDGQHMLTPYGKTIVQIIPSLTFLFEQREYFIEHDTS
                     DLPVEFVQRIGSLGKCEVVHGVLAIVQRWKNLYLESGSYIKEIMGQVPVDLIEVLSSR
                     VDSGVKFYYIFGKDSVIPKGRSEILDKVGWKEFISRGLVARRMLERVKFMVILNEKEA
                     CVLFPNLKGEPDLNTMFYSQDREFRSWCDDLFELQWKLASTFDESKLMAEV"
     gene            complement(1532..>2122)
                     /locus_tag="VNB68_00595"
     CDS             complement(1532..>2122)
                     /locus_tag="VNB68_00595"
                     /inference="COORDINATES: protein motif:HMM:NF012379.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid--tRNA ligase-related protein"
                     /protein_id="HVD35877.1"
                     /translation="CDIVQKIILERSEELKYLSVDLSALNRIHEPFDRLKYDKAIEIL
                     QSMEIKVQEGETTRPVVWGDDLNIDSERAITREKKSPIFIVGYPLQVKPFYVKEDPLN
                     HGVALSTDLLLPDGFGEVSSGGIREDNIENIRTRLIEQGLDLNSYSWYMDLRKYGSVP
                     HGGFGIGIERLIRWIINSNDIKECVLFPRTMSRVMP"
BASE COUNT          613 a          476 c          340 g          693 t
ORIGIN      
        1 ttatctgtcc gagcaacaca gcataaaaaa atgatattgt atagaatgaa atcttcctaa
       61 ccgtactagt ttctaatttc cttacaatat tgtggttttc tgattagaac tacttttgtc
      121 caagactatc aaataatatc atgttagcca tactcagccg tttctgctaa tagtaataat
      181 aatacatttg atatttttgg taaatctgct gggagcataa tcagtctagt taaaagcaaa
      241 tcatacaaaa atcccctatc tagatactca ttttagtcca ttactatcat tgtaagggtc
      301 gattttactc cattaagctt tcttaatttc catgtgatgg tttccttaac tttctccatt
      361 gcttcagctt ctacctgtgc gacaatatca taaacaccat aaacttggta gacttctttg
      421 actccatcaa tagtcttcag ttcgctaacg atagaatctt cgctacctaa ctctgcattc
      481 atgagaacaa aggcctttgg cataatcaat ctcgtacgtt cgaaatataa aaagatgatg
      541 caacataatt gttattactt ggaaattatc tttcagtttt ttacaggaac aaaaggtttc
      601 ctacgtaaat ccagtcaaaa taaacatgac aatctatact tctgccatta actttgattc
      661 atcgaatgtg gaagccaatt tccattgcaa ttcaaacaaa tcatcacacc atgaacgaaa
      721 ttctctatct tgactgtaaa acattgtgtt gaggtcaggc tcacctttca aatttggaaa
      781 gagaacacat gcctctttct cattaagtat taccataaat ttcacccttt caagcatcct
      841 ccttgcaacc agccctctgg atatgaattc cttccatccg actttgtcga gaatttcact
      901 tcttccctta ggtattacac tatctttccc gaatatgtaa taaaacttga caccagaatc
      961 aactcttgag cttaggacct caatgagatc aacaggcacc tgacccatta tttctttaat
     1021 ataggaccct gattccaggt acaagttctt ccatctctgt actatggcta gtaccccatg
     1081 tacgacctca catttgccga gtgatcctat cctctgaaca aattctacag gtaggtcgct
     1141 tgtgtcatgt tcaataaaat attctctttg ttcaaacaag aaagtcaaac taggaattat
     1201 ctgcacaatt gtcttcccat aaggtgtcag catatgttgg ccatcgctat ccttcaagac
     1261 catgccagct tctataaacc gtgtaatgtt tctgtgagtt tcctggattg tagcgtttag
     1321 ttcggttgct agatgggaca acctataggg tctctcccgg aacttagaga gcatggatag
     1381 tcgcaaattt cctgccagtt caaagaaaag cgatcctgcc cccttttcgg gctcggaatc
     1441 cattttatct attatctgcg agacttgaat ttaaacatga ggagctatat cgctgatagt
     1501 agcaatgtac ccttctatgc gcatacggaa atcaaggcat aaccctagac attgttcttg
     1561 ggaaaagaac gcattctttt atgtcgtttg aatttattat ccatcttatc agccgttcta
     1621 ttcctattcc aaaacctcca tgaggaacag agccgtactt tcttagatcc atgtaccagg
     1681 aatatgaatt caaatccaat ccttgttcta ttaatctagt cctgatattt tcgatattgt
     1741 cttctctgat accgccgctg cttacctcac caaaaccgtc gggcaacagt aaatctgtcg
     1801 agagtgcaac accgtgattt agggggtctt ctttaacgta aaaaggttta acctggagtg
     1861 gatagccaac aataaaaatt ggactctttt tctcgcgagt aatagctctt tcggaatcaa
     1921 tattaaggtc atctccccag accacgggtc gagttgtctc tccttcctgc acttttattt
     1981 ccatggattg taaaatttct attgccttgt cgtacttcag cctgtcaaat ggttcgtgga
     2041 tccggtttag ggctgacaag tcaacactca agtatttcag ctcttctgat ctttccaaaa
     2101 tgatcttttg aacaatatca ca
//
LOCUS       DATLQL010000057         1385 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_367649, whole genome shotgun sequence.
ACCESSION   DATLQL010000057 DATLQL010000000
VERSION     DATLQL010000057.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1385)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1385)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1385
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_367649"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1134
                     /locus_tag="VNB68_00600"
     CDS             <1..1134
                     /locus_tag="VNB68_00600"
                     /EC_number="2.1.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004372 - glycine hydroxymethyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0019264 - glycine biosynthetic process from
                     serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HVD35878.1"
                     /translation="GCRYIDKVELICNELAQRVFQAEFADCRATSGVVANLAIYSAFS
                     NPGDYMLAASIPSGGHISHGKKEHFGTAGFVHGLNIEHYPFWKEEMTIDVDATKKKIL
                     GMISDNKKPAIAMFGGSLFLFPHPVKELAEFMHEHDIYVNYDGAHVAGLIAGGEFQAP
                     LKEGADSMTMSSHKTLWGPQGGIIVSLQKHAENIKKAIFPGNTSSHHLHHVAGKAVAL
                     AESMEFGKDYAKQVIQNAKSLAQFLAASGFGVLGEKRGYTESHQIAVDVSKFGDGGTI
                     EQELEKANIILNRQLLPGDIKAGKHYMHPSGVRIGVPEVTRLGMKKGDMETIAAFIKR
                     VVIDKVDPTQVAKDVSAFRKDFQKVHYAFDNTMLAHEYVRFRK"
BASE COUNT          454 a          232 c          311 g          388 t
ORIGIN      
        1 ggatgtagat acattgacaa agtagaattg atttgtaatg aattagcaca acgagttttt
       61 caggctgaat ttgccgattg cagagcaaca tctggggttg ttgcaaatct tgcgatttac
      121 tctgcttttt ctaatcccgg agattatatg ttggccgcct caattcctag tggagggcat
      181 atatcacatg gaaaaaagga acattttggc accgcaggtt tcgtgcatgg gttaaacata
      241 gaacattatc cattttggaa ggaagaaatg acaattgatg tcgacgcaac gaagaagaag
      301 atattgggga tgatttcgga taataaaaaa ccggcaatag ctatgttcgg aggaagtttg
      361 tttctttttc cgcatcctgt caaggaattg gcagaattta tgcatgaaca cgatatctac
      421 gttaactatg atggtgcaca tgtagcgggt ttaattgctg gaggagaatt ccaagctcca
      481 ttaaaggaag gagcagattc catgacaatg agttcacata aaactttgtg gggaccacag
      541 ggcgggatta tcgtgtcatt gcaaaaacac gctgaaaata taaaaaaagc catatttccc
      601 ggaaatacca gcagtcatca tttgcatcat gtagcaggaa aggcggtcgc actggccgag
      661 tctatggaat ttggaaagga ctacgcaaaa caagttatac aaaacgcaaa atcactagcc
      721 caatttcttg cagcctccgg cttcggcgtt ttgggggaaa aaagaggata taccgaatcc
      781 caccaaattg cagttgatgt ttctaaattc ggtgacggcg gtactattga acaggaatta
      841 gaaaaagcga atatcattct taatagacaa ttattgcctg gtgatattaa ggctgggaaa
      901 cactatatgc atccaagcgg cgtaagaata ggtgttccgg aagtaactag gttaggaatg
      961 aagaaaggtg acatggagac tatagcagcg ttcatcaaac gagtcgtcat agataaggta
     1021 gatcccacac aggtagcgaa agatgtttct gcatttagaa aagattttca aaaggtacac
     1081 tacgcatttg ataataccat gctggctcat gaatatgtac ggttcagaaa atgattttga
     1141 aaaaagatga tattctgatc atcaataaat ttgatagccc ttgtgtattg ctaattggtg
     1201 ataattacaa acatttcaca gtgttgctat gtcataaaaa gtaagggata ttggtagtcc
     1261 atcgtacgct gcatatactt gttgtaatgt gcattcatta aaaattatgg ataccacaat
     1321 atttcgttca aatttctgtc agcaaatatt ctatcagtta gcgtgctgca agtaaaattg
     1381 ttcaa
//
LOCUS       DATLQL010000058         1204 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_190039, whole genome shotgun sequence.
ACCESSION   DATLQL010000058 DATLQL010000000
VERSION     DATLQL010000058.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1204)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1204)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1204
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_190039"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            792..>1204
                     /locus_tag="VNB68_00605"
     CDS             792..>1204
                     /locus_tag="VNB68_00605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35879.1"
                     /translation="MTSAEKHFSPVADQTVLFQVFTHIGWLVSQSLFLLLQGEPPVFS
                     KLAGIRFLKKKMIFYKARESNSLLVKSEIKFLARKANSNSLGKYKEKRQKYSSCSGTW
                     IMFDYHGKGSIASSNTVNIRFKSIMLHYKRKMQTL"
BASE COUNT          383 a          232 c          222 g          367 t
ORIGIN      
        1 cgtatatgca tgttttttca agaaccttta gatgttctgt cgactaaaca ctacctttca
       61 atcagaaccc tgccttcttt agttttgatc cgcaatttgg gcatgaactc tgatcatgct
      121 ttgttccgca attcaagcaa tagtaattta tgctcctttg agagccaaac attttgccaa
      181 agtatgaaga accaaaagag gcagcttgac ctgcttttcg gaaatgtctt cttctccgat
      241 aaactccaag cccaatcaca gcgagaacga ttacaatgag agaataagga aatgtcaata
      301 gcctagaaac tagaaacgct atcccaaagt agatgccaat ccacatcact gtttcaatca
      361 aaaagcgttt tgtattattg tccactttta aggatcagta ccacataatg atggtccttg
      421 ttattattct aaagtaatat catcaatcat ttctttagtt acataactgg gaggattggt
      481 gtcaatatat gcgaatacca accactatac ggcagacaaa caggacaggg aattggtgtc
      541 ctcccgtatg gatatataca cctaatgttg aacagtagat cttgtaattt gtattctacg
      601 aaaaactaat ttggggttga gagcccagaa atctgtgtag tgtacgcaat ttgtagtccg
      661 aatatatctt tctggcattg acaatatcag cttacatgta gttatttttt cccgacttca
      721 atgcaaatta ctcctggagg gtattagtcg aatcgccatg atctacggct acttagccca
      781 acttgtatac attgacatct gctgagaagc atttcagccc tgtagctgat cagactgttc
      841 tttttcaagt tttcactcat ataggatggc ttgtaagcca gtcattattt ctgttgctgc
      901 agggagaacc tcctgttttt tctaagcttg ctggtatcag attcctgaag aagaagatga
      961 tattctataa agcaagggaa agcaactctt tgctagtgaa atctgagata aaattcctag
     1021 cgaggaaagc aaacagtaat tcactaggaa aatataaaga aaaaagacag aaatattcct
     1081 catgtagtgg cacttggata atgttcgatt atcatggtaa aggaagtatc gcctcctcca
     1141 atacagtcaa tataagattc aaaagtatca tgttacatta taaaagaaag atgcaaactc
     1201 tgtg
//
LOCUS       DATLQL010000059         1066 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2320468, whole genome shotgun sequence.
ACCESSION   DATLQL010000059 DATLQL010000000
VERSION     DATLQL010000059.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1066)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1066)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1066
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2320468"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..392)
                     /locus_tag="VNB68_00610"
     CDS             complement(<1..392)
                     /locus_tag="VNB68_00610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0046961 - proton-transporting ATPase
                     activity, rotational mechanism [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATP synthase subunit D"
                     /protein_id="HVD35880.1"
                     /translation="MSFGKNVTATKIELIKIRRSLQVSSMVHKILDDKREVLLKKIDE
                     MIEEANKTRGDIWSPLSDIYSAVYDSYMSLGTSTLESISDSTPAIMEVNVDVRRIVDV
                     KIPTLQIKTKQGGQDLSYGFSETNVYVD"
     gene            complement(409..>1066)
                     /locus_tag="VNB68_00615"
     CDS             complement(409..>1066)
                     /locus_tag="VNB68_00615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="V-type ATP synthase subunit B"
                     /protein_id="HVD35881.1"
                     /translation="MHVLAILTDMTNYAEALREISAAREEVPGRKGYPGYLYTDLANN
                     YERAGRIKGKSGSVTQMPILSMPADDITHPIPDLTGYITEGQVVLGRDLFRKGIYPPV
                     NVMMSLSRLMKDGVGEGKTRSDHMEVGNQLYDAYSRAQEVRALAEIVGKAGLTGVDLK
                     YLDAGDNFEMHFLKQSPDENRSLDETLSRAWDILAALPEGELTKIKDKHIQQYYKGNK
                     "
BASE COUNT          278 a          248 c          165 g          375 t
ORIGIN      
        1 ttgtcaacat agacgtttgt ttctgaaaat ccgtaggaga ggtcctgacc accttgtttt
       61 gtttttatct gtaaagtggg aattttcaca tcaacgatcc ttctcacatc aacatttact
      121 tccattatag ccggagtcga atctgaaatt gattcaagtg tcgatgttcc cagtgacata
      181 tacgaatcat agactgcaga gtaaatatca gaaagtggag accagatatc acctctcgtt
      241 ttattagcct cttctatcat ttcgtcgatt ttttttagta acacttctcg tttgtcatca
      301 agtattttgt gaaccatact gctaacttgc aacgatctcc ttatctttat cagttctatt
      361 ttcgttgcag taacattttt cccaaatgac atttcgatgt actatagttt acttgtttcc
      421 cttataatac tgctgaatat gtttgtcttt aattttagtt agttcccctt ctggtaaagc
      481 agccaatata tcccatgccc tgctcagcgt ttcatccaaa cttctatttt catcaggact
      541 ttgctttaga aaatgcatct caaaattatc cccagcgtca agatatttca aatcaactcc
      601 ggttaaaccc gcctttccta caatctctgc cagtgctctt acctcttggg ctctagaata
      661 agcatcgtat aattgattgc caacttccat atgatctgat ctagtttttc cttcaccaac
      721 accatccttc attaatctag aaagtgacat cataacattg accggtggat atattccctt
      781 tctaaaaagg tctcttccca ggactacttg tccttccgta atgtaaccag tcaaatcagg
      841 tataggatgt gtaatgtcat ctgcgggcat tgataatatc ggcatttgag taacacttcc
      901 gctctttccc ttaattctcc ctgctcgctc ataattattt gccaggtcag tatagagata
      961 tccaggatat cctttccttc caggaacttc ttctctagcg gcgctaattt ccctgagggc
     1021 ttctgcataa ttggtcatat cagttagtat agccaataca tgcata
//
LOCUS       DATLQL010000060         1136 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_190311, whole genome shotgun sequence.
ACCESSION   DATLQL010000060 DATLQL010000000
VERSION     DATLQL010000060.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1136)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1136)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1136
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_190311"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            511..>1136
                     /locus_tag="VNB68_00620"
     CDS             511..>1136
                     /locus_tag="VNB68_00620"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HVD35882.1"
                     /translation="MKTAIITGAGRGIGKETAILLAKNGINVVVCSRTRKEIDSLAEE
                     INMMDKQYSPYHHPTDLQHKEILTKKKPEALAIKCDVGVSSQVNSLINSTLDKFGTVD
                     ILVNNAGVVFVKKLMHTSEEEWDQTISSNLKSAFLCTKAVLPHMLSNRSGAIINVSSG
                     AGKVGFENLSVYCASKFGMVGLTASLADEVANEKIRVMAICPGEVATT"
BASE COUNT          392 a          197 c          233 g          314 t
ORIGIN      
        1 tcgatcattt gtaattgtag ttatattact atactaatgt ataacaaatt cctcaagttg
       61 taaaatataa gtacaaacat tacagtctta gtgcaggaaa aatgtgcttg atttcgactt
      121 ttgctgccaa taaatcgact acgataacag cggctgattt tatttgtcaa tatgtcaagt
      181 cgtactgcca ctgaatcaaa gctagaagtt tggctgtcga tcagtagttc cagtttagaa
      241 ataaaattac actctcctat ctatctttct atttatttat taacggtctt gcgtattagg
      301 ctcaaagtag tgttgaataa tggacatgct aaaaaagcat aatgtcaata acaacagcaa
      361 caacgacgac agccgctacg aaaacaatta tgaaagacaa aggtgtttac tagatgtttt
      421 atttcctagc attctaagtt gaaatcagag ataacaacga taataagaat aaaatgtttc
      481 aagagcacac ggtaacccat tgtgacaaaa atgaagactg ctattattac tggtgcaggc
      541 agaggcattg gaaaggaaac cgccatactc ttagcgaaga atgggattaa cgtagttgtg
      601 tgttccagaa ctcgcaaaga aattgattca ctagcagaag aaatcaatat gatggataag
      661 caatacagtc cttatcatca tccaactgat ttacagcata aggagattct cacgaaaaaa
      721 aaaccagaag ccttggcgat taaatgtgac gtgggggtgt cttcacaggt aaattccctt
      781 attaactcaa cactagacaa attcggaact gttgatatct tggtcaataa cgccggggta
      841 gtatttgtca agaaacttat gcatacttca gaggaagaat gggatcagac gataagcagt
      901 aaccttaaaa gtgcatttct ctgcacaaag gccgttctac cccacatgtt aagcaacaga
      961 tctggcgcta taattaacgt cagctcagga gcgggaaagg taggttttga gaacctatca
     1021 gtatactgtg caagtaagtt tggaatggtg ggattaactg ccagcttagc agacgaagtt
     1081 gctaatgaaa agataagggt tatggcaata tgtcctggag aggtggctac gacaat
//
LOCUS       DATLQL010000061         2302 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_722589, whole genome shotgun sequence.
ACCESSION   DATLQL010000061 DATLQL010000000
VERSION     DATLQL010000061.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2302)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2302)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2302
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_722589"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..209)
                     /locus_tag="VNB68_00625"
     CDS             complement(<1..209)
                     /locus_tag="VNB68_00625"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HVD35883.1"
                     /translation="MPTIVHFEIPANDIGRAKKFYNDLFGWKIEKWPGTEDNSSQLTS
                     PVTGQSIEYWMVITTDDKGNKALGGG"
     gene            complement(215..616)
                     /locus_tag="VNB68_00630"
     CDS             complement(215..616)
                     /locus_tag="VNB68_00630"
                     /inference="COORDINATES: protein motif:HMM:NF018893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1428 family protein"
                     /protein_id="HVD35884.1"
                     /translation="MSKSNLTEIEQGIGSEVDHFVYRVPKKNHDAMVQLNKQFAEIMR
                     KYGAPHLIFQLNNTEAPMDGITNITKTVSANQDDEVWMELIFYRDRKHRDEVSANMQN
                     DESMGRLFQQSLDLVTAGTGFIMGEFSRIRV"
     gene            complement(897..1106)
                     /locus_tag="VNB68_00635"
     CDS             complement(897..1106)
                     /locus_tag="VNB68_00635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35885.1"
                     /translation="MAREIVSMLFGLKGYINHKIDLYGNVSVSESESVSVRKIPKDSQ
                     SFCEGKETILTSIWFYQRATKLSAI"
     gene            complement(1517..1642)
                     /locus_tag="VNB68_00640"
     CDS             complement(1517..1642)
                     /locus_tag="VNB68_00640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35886.1"
                     /translation="MNEVMSKMQKDERCERSYKQSADLLPSGARFIIGEFDRLSF"
     gene            complement(1685..1921)
                     /locus_tag="VNB68_00645"
     CDS             complement(1685..1921)
                     /locus_tag="VNB68_00645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35887.1"
                     /translation="MNKSDTGEMQRETGSLVQHVVYRVPKKNHDAMLHLCKEANDIFR
                     ENGGLRHDVFQLSNTDVPMEGFTNVANIVSADQD"
BASE COUNT          666 a          483 c          407 g          746 t
ORIGIN      
        1 ccgccaccta atgctttgtt tcctttatca tctgttgtta tcaccatcca atattcaatt
       61 gactgacctg ttactgggga agtaagctga ctactattat cttctgtacc aggccatttt
      121 tctattttcc atccaaagag atcattataa aatttctttg cccttccaat atcatttgca
      181 ggtatttcaa aatgaacaat tgttggcata ttatctagac cctgattcga ctgaactccc
      241 ccatgatgaa tccggttccc gcagtgacca gatccaatga ctgttggaaa agtctaccca
      301 tactttcatc attttgcata tttgcagaga cttcatctcg gtgcttacga tctctgtaga
      361 atattagctc catccaaacc tcatcgtctt ggttagccga gacagttttg gttatgttgg
      421 tgatgccgtc catgggtgcc tccgtattgt ttagctggaa aattaaatgt ggagccccgt
      481 atttcctcat tatttcagcg aattgtttat tgagctgtac catcgcgtcg tggttctttt
      541 ttggtactcg gtagacgaag tggtctactt cacttccaat cccttgctct atttctgtca
      601 agttggattt actcatgagc aaaggtatag cttaaatagt taataagtat gcaagggatc
      661 aaaagtatag ttgttgcgat atggttatta taatgatact atagaataat ccaatcattt
      721 agttgtgaaa caagtataat tgtctgtgta ttcctagaca ctacttagaa tagttcgagt
      781 ttaatttcgc cattcattct cttcattttg ttattattat ggtcgccttg ccaactaatg
      841 tgtcggatat tacgcgttct tggatttgaa actgtaaaga actcattctt tgtcagtcaa
      901 atagcactta actttgtagc tctttggtaa aaccatatgc tagttaagat ggtctctttt
      961 ccttcacaaa aactctgact gtcttttgga attttcctaa cgctcacact ctcactctca
     1021 cttacggaaa cattcccata aaggtctatt ttgtgattga tatagccttt caacccaaac
     1081 aacatactca caatttccct agccaattag atatcttctt tgttcaacgc cttctttcgt
     1141 tctcgttcta gtagaggtcg caattctatt gtatactagt atactatatt tactcaacaa
     1201 tcatcataac gatattgaaa attaccatac tctataaaaa aactggttat ggggaataat
     1261 aatactcacc aattaataac gagaaattca ggatatatac aaaatcaagt taaagatccg
     1321 ccatcagcag agatctttat tttctaacac aacaatctaa agcgaacatt cgtaaataca
     1381 ttgacgagtg gcttcctgca gagtatgaaa aacgttaggt cggtcttact ccaatcttaa
     1441 aggaagcatg gataacagca gcaaagactg aggataaggg agagaagcta caagcctgca
     1501 gattctcttg gaaagtctag aagctgaggc ggtcaaactc ccctatgatg aatctggctc
     1561 ccgagggcaa caaatctgca gactgtttgt aagatcgttc acatctttca tccttttgca
     1621 tctttgacat tacttcattc atgtgctggc gatctctgaa gtacagtaac tccatccaaa
     1681 cttcctagtc ctgatccgct gagacgatat tggctacatt agtgaagcct tccattggca
     1741 cgtctgtatt gctaagctgg aaaacgtcat gccgtaaacc accgttctcc ctaaaaatgt
     1801 cattagcttc cttgcataga tgtaacatgg cgtcatgatt ctttttcggt actcgatata
     1861 cgacgtgttg gaccagactt ccagtctctc tctgcatttc cccagtatct gacttgttca
     1921 tggccataac tagataagtt atagcttata agtatacaag ggatcaaaag tatagtcagt
     1981 tcaaaacatg atacaagatt tcaggcgaga tggcgttaca atttgaggat taagtatcaa
     2041 ccaagcctag aaaacaaact taagaatgtt ctcaatacaa ttgcatttac acgttctcat
     2101 ttaagcgcag ggctacaacc tgcctatttt attagtagag taacgtggac tcatgtagag
     2161 tagaataaaa gtgacagttt caatcagcta tcatcattgt gggactgtta ttctgatagg
     2221 acgtacgagc caagaatttt tcccgaccga agaaaatggg tatgacatgt ccgtaatgcc
     2281 ctactctgaa tattccagat at
//
LOCUS       DATLQL010000062         1142 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_899765, whole genome shotgun sequence.
ACCESSION   DATLQL010000062 DATLQL010000000
VERSION     DATLQL010000062.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1142)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1142)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1142
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_899765"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..668)
                     /locus_tag="VNB68_00650"
     CDS             complement(<1..668)
                     /locus_tag="VNB68_00650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35888.1"
                     /translation="MALHHVQKPSKPFVITSVIMLLFGSVLGALWMMTLYGVALPPGL
                     IDIIRLHRSVQFDGFITMLIMGIGYMIVPRFRNIPLPSPKLAYISYVLMVGAVIIPIM
                     TSSSITNTSQSLTSSFIGAWIFCKVGAVTIFGGLIIAVLRTRPKLLGMADYYIALSII
                     LLAILTISQIINHEYKSSTIQLWFMFPIVMIFGIEYKTLPAFVGFVRPRNRMAASSVA
                     LLAAS"
     gene            complement(860..>1142)
                     /locus_tag="VNB68_00655"
     CDS             complement(860..>1142)
                     /locus_tag="VNB68_00655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MarR family winged helix-turn-helix
                     transcriptional regulator"
                     /protein_id="HVD35889.1"
                     /translation="DLAKKLGLDRTTLTRNLSVLERQGFIKISSGKDHRTRSVTATQK
                     GRSSVAKALPLWNEVQAKVKQQMGENSWRELMQNLGHFVTVADQLIDQN"
BASE COUNT          345 a          231 c          213 g          353 t
ORIGIN      
        1 gacgccgcta atagcgccac ggagctagct gccatcctgt ttctgggcct aacaaaacct
       61 acaaaagctg gtaacgtttt gtattcgata ccaaagatca tgactatcgg aaacataaac
      121 cataattgaa tagtacttga cttgtattca tgatttatta tttgagaaat agtaagtata
      181 gctaagagta ttatggagag agcaatgtaa tagtctgcca tccccaataa ctttggtcga
      241 gttctcaata ccgcaataat gagtcctcca aaaatagtaa cagcacctac cttgcaaaat
      301 atccaggcac caatgaaact gctagtgagc gactgtgatg tgtttgtgat tgatgatgat
      361 gtcattatgg gaataatgac agcgcccacc ataagcacgt acgaaatata tgctaatttt
      421 ggtgagggta aaggaatatt cctaaatcga ggtactatca tgtatcctat gcccattata
      481 agcatcgtta tgaaaccatc aaattgtact gacctgtgca atctaataat gtcaattagc
      541 ccaggtggta aggctacacc atacagcgtc atcatccata aagcgcccaa aacagaacca
      601 aacaataaca tgataaccga tgttattaca aatggtttgc taggcttttg tacgtgatgt
      661 aaagccaatt tcgttatcga tgtgaaagtt ctagctatta tatagctagc tatcctatgt
      721 tatgcaatag cagtctttaa aattcttgaa attgtttttt atcacatagc tatctgcaag
      781 tgagcatcaa tcagttatcg taccaccatg gtatccagat agttctttca attactatga
      841 atcttgtgtg ttggattatt tagttctgat caattaattg atcagctact gttacaaaat
      901 ggcccaaatt ttgcattaat tcacgccatg agttttcacc catttgttgc tttactttgg
      961 cttgaacttc attccagaga gggagagctt tggctacaga gctacgtcct ttttgagtag
     1021 ctgtcacact tctcgttcgg tggtcttttc ccgatgagat cttgataaaa ccctgtctct
     1081 ctaaaacaga tagattccgg gtcagagtcg tcctatccag ccctagcttc ttagcaagat
     1141 ct
//
LOCUS       DATLQL010000063         1258 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2322546, whole genome shotgun sequence.
ACCESSION   DATLQL010000063 DATLQL010000000
VERSION     DATLQL010000063.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1258)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1258)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1258
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2322546"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            149..586
                     /locus_tag="VNB68_00660"
     CDS             149..586
                     /locus_tag="VNB68_00660"
                     /inference="COORDINATES: protein motif:HMM:TIGR00270.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multiprotein bridging factor aMBF1"
                     /protein_id="HVD35890.1"
                     /translation="MSSSSSFCELCGRRITDGKKTVLIDGSIFNVCISCSKRGKPYVP
                     SMPGKASSNSRASSPKSILHRTSKIQMADETLLNRNFGNLIREARMKKGWTHEQLGKI
                     MNEKATLLRKFETGTLKPDELSAKKLGRFLGIKLYEKIEDEED"
     gene            591..>1258
                     /locus_tag="VNB68_00665"
     CDS             591..>1258
                     /locus_tag="VNB68_00665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase"
                     /protein_id="HVD35891.1"
                     /translation="MSTIPSALLITYTFEGAMKEATSLADAAGYSIKKTISQRHITRS
                     RYGIGEGKAEEVKKLAEQLRPEVIIFDEILKPSQQYNLAKLCKVEIIDRERLILEIFE
                     RRASTAESRIQIRLAQLRYEMIRAKQKVRLAKAGEQPGFYGLGKYDADVHFLDIKRRA
                     VVLNKKLAKEEVRRSLYRNQRAKAGLPTVSIAGYTSAGKTTLFNILTGEAKIVGGGMF
                     TTIYT"
BASE COUNT          471 a          200 c          282 g          305 t
ORIGIN      
        1 aaatgaaacg tgagcgaacg tgagcagagt taacagaggt aatacacgta ttaagcgtga
       61 ttcaatcctt tatttaaggt aaaatgagag agctaattat tcagtggcag gaaaaggcta
      121 aattgcaatc gtagcataaa tagatcagat gtcatcatct tcatcgtttt gcgaactctg
      181 cggaagacgc ataacagatg gaaaaaaaac tgtattaata gacggctcca tatttaatgt
      241 ctgtatatca tgctcaaaac gtggaaaacc atatgtaccc tctatgccgg gaaaagcaag
      301 tagtaatagt agagcatcaa gtccgaagag tatcttgcac cgtaccagta aaatccagat
      361 ggctgacgag acactactta atcgcaattt cggaaatttg attagagaag cgcgcatgaa
      421 aaaaggttgg acacacgaac aattaggaaa aataatgaat gaaaaggcga cactgctacg
      481 aaaatttgag acgggaacat taaaaccaga tgagttatcc gcaaaaaagc taggaagatt
      541 cttaggaatt aaattatatg aaaaaatcga ggacgaggaa gattaattag atgtcaacta
      601 taccaagtgc tcttttaatt acatatactt ttgaaggggc gatgaaggaa gcaacttctc
      661 tagcagatgc tgccggatat tctattaaaa aaaccattag tcagcgtcat attacaagat
      721 caagatatgg aatcggggag ggaaaggcag aggaagtaaa aaaattagct gaacagttga
      781 ggccagaagt tatcatattt gacgaaatac taaaaccaag tcagcaatac aatctagcaa
      841 aactctgcaa ggttgaaatt atcgatagag aacggctgat tttagaaatt tttgaacgtc
      901 gtgcaagtac tgcggaatcg aggattcaga ttaggttagc tcagcttcgc tatgaaatga
      961 taagagccaa acaaaaggtt agattggcaa aagctggaga gcagccagga ttttatggac
     1021 taggtaaata tgatgctgat gttcattttc tcgatattaa acgacgggca gtagttctga
     1081 ataaaaaatt ggcaaaggaa gaggtaagaa gaagtctata cagaaaccaa agagcaaaag
     1141 caggtctacc tactgtttcc atagcgggtt atacatctgc aggaaagact acgctcttca
     1201 atattctaac aggtgaagct aagatagttg ggggaggaat gttcactacc atatacac
//
LOCUS       DATLQL010000064         3783 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_724184, whole genome shotgun sequence.
ACCESSION   DATLQL010000064 DATLQL010000000
VERSION     DATLQL010000064.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3783)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3783)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3783
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_724184"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(231..1586)
                     /locus_tag="VNB68_00670"
     CDS             complement(231..1586)
                     /locus_tag="VNB68_00670"
                     /EC_number="4.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiD family decarboxylase"
                     /protein_id="HVD35892.1"
                     /translation="MTRNKLSNDLSGLEEFLNLLHRSKEIVTIKKTVSPKYEIAAIVS
                     RLDKGKAVLFESIKNNKLRVTANILGTRKRIALAIGARSEDHIDERINVAVSRPITPK
                     SFQDVIWKKKAKNLFDLPIVTHFEKDFGPYITSSLVFVQNQETESQNLSTHRLLRLND
                     TFMVIRMVEGRHLHRCYSFAKEHGEDLRVSIVIGAHPAISIASAYQASYGEDELGIAN
                     ALMDGRLLVTKAPLSGLQVPSRSEILMEGRILLDQAKSECMVEMLRTYDMKRIQPVFQ
                     LDRIYYRDQCIYHDILPGYGEHRLLMGIPIESRIHHAVKNVVPTTENVYLTEGGCNWL
                     HAVIQIKKRLEGEPKNAILAAFAAHPSLKMAIVVDDDIDPKDPIQVEYAIATRCQADR
                     DLIIVRNAKGSSLDPSSDQENLLTTKLGIDATVSKFKEKDRFEIARIPGLEKTRLSYY
                     L"
     gene            complement(1645..1956)
                     /locus_tag="VNB68_00675"
     CDS             complement(1645..1956)
                     /locus_tag="VNB68_00675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35893.1"
                     /translation="MTDAAVTQNCKETVVNSRTGRVFLVRYLDFQNGCVLSISEDLHR
                     LGSLYVSTAFANSVRTAKVIPSITDSLFLNAVSERVASMINGLAIVNFSSKNQLNNSD
                     M"
     gene            complement(2464..3015)
                     /locus_tag="VNB68_00680"
     CDS             complement(2464..3015)
                     /locus_tag="VNB68_00680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35894.1"
                     /translation="MLKSFGLNFISMLPEEASLSDAKVIITTKSEAHIIKKESVIVYS
                     EINTYPIVFKARILKNMIGKFYDDILIIGVDPGHRIGIYILYLHDELERTVQSSTRDA
                     IKLITILLKEIHAKEKIVRIGDGHTSIAHCIASEIKTRFRNNVRVEIVDEFGTSRKSS
                     SNRRGIRDESSAKSIAMRKGYTL"
     gene            3316..3549
                     /locus_tag="VNB68_00685"
     CDS             3316..3549
                     /locus_tag="VNB68_00685"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HVD35895.1"
                     /translation="MSQTKGEVLLVDDEVDTARTLGRILETSGFKVDIFTDPNAALGS
                     FKTAYYDLAAIDVRMPDMNGFELYSEIKKINER"
BASE COUNT         1091 a          759 c          684 g         1249 t
ORIGIN      
        1 taggatatta gatgtagaat agcagtctat attggatctg gaattatatt acgtaaaatt
       61 acattagctt ggtctggcaa aactatatag ccgcatcttt agtataactt ggccttgaac
      121 aaaactacac aatcgctcct accgcaacaa caaggatttg gtcacggttc agagggagta
      181 ggatttaagg ctaaccaggg ttcagtatta cagacgacta aaccgcaaaa tcataggtaa
      241 tagcttaacc tggttttttc cagtcctgga attctagcaa tttcaaatct atctttctcc
      301 ttgaatttgc tgaccgttgc gtctattcca agctttgtcg ttagcaagtt ttcttgatca
      361 cttgaaggat ccagacttga acctttagca ttgcgcacga ttatcaaatc tctatcagct
      421 tgacatctag tcgctattgc gtattccacc tgaataggat cttttggatc aatgtcatca
      481 tcgaccacga tagccatctt gagcgatggg tgtgcagcaa atgccgctaa aatagcattc
      541 tttggctctc cttcgagtct tttcttgatc tggatcactg cgtggagcca attgcatccg
      601 ccctctgtta gatatacatt ctcagtggta ggaacaacgt tttttaccgc atgatgtatt
      661 ctcgattcga taggaatgcc catgagtaag cgatgctcac cgtaaccagg aaggatatcg
      721 tggtaaatgc attggtcacg ataatatatt ctgtctagtt gaaaaaccgg ttgaatgcgc
      781 ttcatgtcat acgtcctgag catctcaacc atgcattcgg acttagcttg atctagaagt
      841 attcgtcctt ccatgaggat ttccgaccga cttgggacct gcagacctga gaggggagcc
      901 ttagtaacta agagtcgtcc atccatcaga gcattagcaa ttcccaactc atcttcacca
      961 taagatgctt ggtaggcaga tgctatggat atggccggat gagcaccgat aactatagaa
     1021 acacgtaggt cttctccatg ttcttttgcg aaggaataac atctgtgaag atgtcgtcct
     1081 tcaaccattc tgatcaccat aaaagtatcg tttaacctca gcaatctatg agtggataaa
     1141 ttctgagatt ctgtttcttg gttctgaaca aagaccaaag aggacgttat atacgggcca
     1201 aaatccttct caaaatgagt aacaataggc aaatcaaaga gattcttggc cttctttttc
     1261 caaatgacat cctgaaagga ttttggtgta attggcctcg aaacagctac atttatcctt
     1321 tcatctatat ggtcttcgct tcgggcacca attgcaaggg caattctttt gcgagtcccc
     1381 aaaatatttg cagtcaccct taatttgttg ttctttattg attcaaatag cactgctttc
     1441 cccttgtcca gcctactaac tattgctgca atttcatact tcggacttac tgttttttta
     1501 atagtgacaa tttcttttga acggtgtaat aaatttagga attcttctaa tcctgaaaga
     1561 tcattgctta gtttgtttct agtcatttta tcttttagta tagtttcatc tcttaatgaa
     1621 tttgagaatc tcagctgtaa tgtcttacat atctgaatta ttgagctgat tcttggaact
     1681 gaaattcact atggcgagtc cgtttatcat cgatgccacc cgttcagaaa cagcatttag
     1741 gaacaacgaa tcggtaatac tgggtatgac tttggcagta cgaacactgt tggcgaatgc
     1801 tgtcgacaca tataagcttc cgagtctgtg caaatcttca gatattgata aaacacaacc
     1861 gttttggaaa tctagatatc ttactaaaaa aaccctgccg gttctagaat tcactacagt
     1921 ttctttgcaa ttttgggtaa ctgctgcgtc tgtcattaga atttgtgatt tttaatgtac
     1981 agccattgaa gtgatcatct tcaagggttg ttgttcttct cgtgctcgca gcttggcctt
     2041 atatttcaaa ttccttggct tcgttctaag acgatatcca caacaaggac accacagacc
     2101 gtcccatttt ataaatatct cgcatatctg acatctcttt tggccactag cgtatcttcc
     2161 atgcccaact ggcttttgtg ctttatgccg agtgcatatt cccttacaac tcatctcaga
     2221 aatctatatc ctctataata tattatcatg tttattattt aaggatattg caaaaattct
     2281 atctttgaca ggttagttat gtcaatatta gatataacgt tgcaatattg ttatttgcca
     2341 cactggattc tatttttctc gatcacctga acgatgatta ttcatatctt gattcatatg
     2401 tttagacact tacctatcat gattgtgtac aataattatt ataatcttaa agggggaaat
     2461 tgattataaa gtataacctt ttctcattgc gatactcttt gcagaagact cgtctctaat
     2521 tcctcttcta ttggagctac tcttccgcga agtaccaaac tcgtccacta tctcaactct
     2581 aacattgttt cggaatcggg tcttaatctc agaggcaata caatgggcta ttgaagtgtg
     2641 cccgtctcct attctaacaa ttttttcttt agcatgtatc tcttttaaca aaattgtaat
     2701 tagtttgatg gcatcccgag ttgaactttg cacggtccgt tcaagctcat catgaagata
     2761 taatatgtaa ataccaattc tatggccagg gtcaactcct attatgagta tatcatcata
     2821 aaacttacca atcatgtttt tcaagattct tgccttaaac acaatggggt atgtgttaat
     2881 ctctgaataa acaatcacac tctccttttt tattatgtgt gcttcactct tagttgtaat
     2941 tattactttt gcatctgata aagatgcttc ctcgggcagc atagagataa aattgagtcc
     3001 aaaacttttt aacatagtta caatcctgta gtaatctctg ccgcttacag ttgctactat
     3061 taccttctta ggaaaagtaa gaatactcag gggaattcca tcatggtcgc gtatcccaag
     3121 atccttatta aattttccta atcgtctgaa actaaaagcg caatttctat ttgcaagaaa
     3181 ataattacta aggagacggc cctatttcga cagagtcgtt taaagcttac tgctcttaga
     3241 tgagcaggat tcaatatcga ataatgcgag gttattagaa gtaataagta tcacggatag
     3301 tgctatgact ttgggatgag tcaaacaaag ggagaagtac ttctggttga cgatgaagtt
     3361 gataccgcac gaactttagg acgcatactg gaaacgtctg ggttcaaagt tgacatattc
     3421 acggatccca atgcagcatt gggaagtttc aagaccgcat attacgacct tgccgcaatt
     3481 gatgttagaa tgcccgatat gaatggattc gaattatact cggaaattaa aaaaattaac
     3541 gaaagataat aaaattaagg tgctttttct cactgcttta aggaatttgc atgattatga
     3601 cgaattcaaa acttatgtat tgccaaaact gcatcaaaga cacttcatta aaaaaccggt
     3661 aactgatgac gaatttctag atgaagtatg ttgtatcttg tattaaataa acatcttcat
     3721 tctttgctat agttgctttt aggaacttac tttactttcc ttgctggacc gactaagaga
     3781 tag
//
LOCUS       DATLQL010000065         1531 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_13235, whole genome shotgun sequence.
ACCESSION   DATLQL010000065 DATLQL010000000
VERSION     DATLQL010000065.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1531)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1531)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1531
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13235"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..527
                     /locus_tag="VNB68_00690"
     CDS             <1..527
                     /locus_tag="VNB68_00690"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HVD35896.1"
                     /translation="RNSFGIDFDPLTGKLWDTENGAGSNDEINVVEPGFNSGWLQVQG
                     KAPPGFDPHQLVDFGGIGKYRDPEFSWLDTIGPTKIKFLTSDKLGKQYQNDIFVGDIH
                     SGRIYDFKLNDNRTGLSLTGPLADKVGDTDNETQGLVFASEFGGISDLVVGPDGYLYV
                     VSLGQGAIYRIVPS"
     gene            726..1367
                     /locus_tag="VNB68_00695"
     CDS             726..1367
                     /locus_tag="VNB68_00695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35897.1"
                     /translation="MISVITALMTVSIASNQIQFVNAETVASGVCNCILDSSTYASSP
                     SKNMTGLTIPSVKLVKNETLQSQTEGNLTWNTVKGTQLLGLLSENFFLGNFSKGTGAS
                     VALNTLKVKQNKSLGIQITGGNTPAQVKVELIKASVNKNGTLGEIKTLGPKVVEIPIQ
                     YDKAVKKPTLGKNSFHVKVPEPGDYLLLIELTYNNKNQPTKHLIAAYELVLLV"
BASE COUNT          495 a          261 c          321 g          454 t
ORIGIN      
        1 ttcggaacag ttttgggatt gattttgacc cgttgactgg aaaactttgg gacactgaga
       61 atggagccgg gtctaacgat gaaattaacg ttgttgaacc tgggtttaat agtggatggc
      121 ttcaagtgca agggaaggca ccacctggtt ttgatcctca tcagttagtt gactttggtg
      181 gcatcgggaa ataccgtgat ccagaatttt cttggttgga tactattggg cctaccaaaa
      241 tcaaatttct tacttcagac aaattgggaa aacaatacca gaatgacatt tttgtaggcg
      301 atattcattc tggtagaatc tatgatttta aattgaatga taatagaaca ggtctatctc
      361 ttactggtcc gcttgcggat aaagtaggag atacagacaa cgagactcaa ggattagtgt
      421 ttgcctcaga gtttggcgga atttctgacc ttgttgtagg tccagatggc tacctctatg
      481 tcgtttcact agggcaagga gcaatatata gaatagtccc ttcttaggta gcatttatcc
      541 tgaaatctct aatgccaaat gtggatcagt taaaggcaaa gaccttatag ccatatttaa
      601 gtagagctca atcatgcaat aatattgaaa ttatgataaa agtagcatat ttatagctac
      661 tactgatttt attgtttgtg ttaaggggga ttttctattc aaacagggaa gaagttgtct
      721 ctatcttgat atctgtaata actgccctta tgactgtatc gatagcatcg aatcaaatcc
      781 agtttgttaa tgcagaaacc gtagcttctg gtgtttgtaa ctgtatactt gattcttcaa
      841 cctatgcaag tagtccttct aagaatatga ctggtctgac aatacctagc gtaaagttgg
      901 taaagaatga aacactgcaa agtcagacag agggcaattt gacgtggaac acggttaaag
      961 gaacccagtt gcttggtcta ctttctgaaa acttttttct tggcaatttc tcaaagggta
     1021 ctggagcatc agttgcgctg aacacattaa aagttaagca gaacaaatcg cttggaatac
     1081 agataacagg tggcaatact cctgcgcagg tcaaagtcga acttattaaa gcatctgtca
     1141 acaagaacgg gacattaggg gagattaaaa ctctagggcc aaaggtagtg gaaattccca
     1201 ttcagtatga caaagcagtg aaaaaaccta ctttgggtaa aaatagcttc catgtgaaag
     1261 taccagaacc tggtgattat ctattattaa tagagttgac atataacaac aagaatcagc
     1321 cgactaaaca tctcatagca gcatacgaat tggtactact cgtttaataa ataatggtca
     1381 atagggaatc gatctaatat agcatacaca aaaaaatatc ttgatcttta gatgcagatt
     1441 taaaatattc ttattcctaa tagtaactcc tacctagtag gataattact gcctttgaga
     1501 taatggactg cagcagttat gaggccaaaa a
//
LOCUS       DATLQL010000066         1567 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_724535, whole genome shotgun sequence.
ACCESSION   DATLQL010000066 DATLQL010000000
VERSION     DATLQL010000066.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1567)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1567)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1567
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_724535"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..285
                     /locus_tag="VNB68_00700"
     CDS             <1..285
                     /locus_tag="VNB68_00700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35898.1"
                     /translation="LIAPYGRTHTLDNHGLIAKIRNPYSEKVNIVIIAGVRSAGTKSA
                     VIALTNHGNEILKKFNQENNWALVVQGFDMDSDGKIDTIDIVDEISTKSL"
     gene            complement(300..803)
                     /locus_tag="VNB68_00705"
     CDS             complement(300..803)
                     /locus_tag="VNB68_00705"
                     /inference="COORDINATES: protein motif:HMM:TIGR01018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HVD35899.1"
                     /translation="MGDPRKPRKSYRRPRRIWNSDQLSSELYIIGSYGLRNKRELWKA
                     QTKVANFRNQARTLLALTLEDRQEKESLLLSFLNRLGLTSTSSLDDILNLKIEDILER
                     RLQTIVMRKMGIKSPLQARQVVIHGHVSVGNRKVNLPGYLVKKDDESKILVHVEVPNK
                     TADAVAS"
     gene            complement(813..1403)
                     /locus_tag="VNB68_00710"
     CDS             complement(813..1403)
                     /locus_tag="VNB68_00710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HVD35900.1"
                     /translation="MLSISEYRHILRIAGKDIEGSKKIIIALSQIKGIGYNLSQTILQ
                     SLNINSNMRIGFLTEKEVSDIEAAIKNPSLIGIPNWYLNRRKDSDTGSDKHLLTSDLD
                     FAISNDIESEKTVYSWRGYRHMFGLRVRGQCTRTTGRKGGAVGVKKVVMRPSAGGAGA
                     GAEAKEAGAVASAPESTTPEPSTPKSGAPKSPETKE"
BASE COUNT          451 a          331 c          261 g          524 t
ORIGIN      
        1 ttaatagccc catatgggag gactcacaca cttgacaatc atggactgat cgcaaagatt
       61 agaaatccat actctgaaaa ggtaaacatc gtaatcatcg caggagtgag atcagctggt
      121 acaaaatcag cagtaattgc cttaactaac catggaaatg aaatattaaa aaaattcaat
      181 caggaaaata attgggcact cgttgttcag ggatttgata tggattcaga tggaaaaata
      241 gataccattg atatcgttga cgaaatatct accaaaagtc tttgaattat tctttcttat
      301 taactagcta cggcatctgc tgttttgttc ggaacttcta catgcaccaa tatctttgac
      361 tcatcatctt tctttaccag ataaccaggt aaattcactt ttcgatttcc aactgataca
      421 tgaccgtgaa ttaccacttg cctagcctgt aacggagatt taatacccat ttttctcatc
      481 acaatcgtct gaagtcttct ctcaagtatg tcttcaatct tcaaattcaa aatatcatct
      541 agagatgatg tactagtcaa acctaaccta tttaagaatg acaagagaag cgattccttt
      601 tcctgtctat cctctaaagt caatgcgagt aatgttcttg cctgattcct aaaattcgca
      661 acttttgttt gagccttcca taattctctt ttgttcctga gtccatatga accgattata
      721 tacagttctg aacttagttg gtcagaattc catattcttc ttggtcttct gtaacttttt
      781 cttggttttc tcggatcccc cattctgctt cactattctt tagtttctgg agatttgggt
      841 gcaccgcttt ttggagtcga gggctcagga gtagttgatt caggtgcaga tgcaactgcc
      901 ccggcttcct ttgcttcggc tccggccccg gcgccgccag ccgacggtct cattacaacc
      961 tttttcactc cgactgcgcc accttttctt ccagtagttc gagtacactg gcccctgact
     1021 ctaagaccaa acatatgtct atagcctctc cagctataga ctgttttttc actttcgata
     1081 tcatttgaaa tggcaaaatc aagatcagaa gttaacaaat gtttgtctga acccgtatca
     1141 ctatcctttc tcctattaag ataccaattt ggaattccta tcaaagaggg attttttatt
     1201 gcagcttcaa tgtcgctcac ctctttttcc gtcaagaaac ctattctcat gttagaattg
     1261 atatttagtg attgtagtat agtttgagac aagttatagc ctatgccctt aatctgactt
     1321 agggcaatta tgattttttt actgccctct atatctttgc ctgctattct taagatatgc
     1381 ctatattcag atatcgacaa catttacgtc catcattttc cgaaataaaa accatgctga
     1441 catataaggt gtaattgatg aaaaaacatt gttttacaac aaaacgaaaa taagctttga
     1501 aacctttaaa tttgtaggta gaacgagctg atgaaagagg attgatttct gaaaatttta
     1561 gagatat
//
LOCUS       DATLQL010000067         1926 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_191991, whole genome shotgun sequence.
ACCESSION   DATLQL010000067 DATLQL010000000
VERSION     DATLQL010000067.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1926)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1926)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1926
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_191991"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..671
                     /locus_tag="VNB68_00715"
     CDS             <1..671
                     /locus_tag="VNB68_00715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35901.1"
                     /translation="LREGVIAGFLRNRDFFNYQKSEDLEKQIPKIVSSNYEPNIQNIE
                     LDSILRHMISYGFLKEREVEILSFAIQTLAKLHATNKLHGLFYMILDEDYPYLTHREQ
                     LVLALSIVQSKKAKTSDWLYSKYRSILKPQNQKSIQKIGILLKLNDLIVKSRSRIKLR
                     ESKNNGIIIDISSSIRSYPAILLQNIIQRVSEVFGIVIECYLPNNLDRPIHTENGMIT
                     VRSK"
     gene            690..1391
                     /gene="tmk"
                     /locus_tag="VNB68_00720"
     CDS             690..1391
                     /gene="tmk"
                     /locus_tag="VNB68_00720"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR00041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004798 - thymidylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HVD35902.1"
                     /translation="MKQHRKESDNNKGKLVVVEGIDGSGKSTQIRLLEKWLRSKNIPV
                     FLTEWNSSETVKQITSKGKRKGRLTPITFSLLHATDFADRYERNILPLLQSGYVVLAD
                     RYIYTAFARDIVRGCNPKWVRKVYEFAVKPDIVFYFRVPVDIAVERILSSRPKLKYYE
                     AGMDLNLSNDPYESYRIFQSRIIEQYDKLATLENFTIVDGLMEIEESQKSLRSLAAQL
                     FPTRIPNRKRRSVAV"
     gene            1388..>1926
                     /gene="tmk"
                     /locus_tag="VNB68_00725"
     CDS             1388..>1926
                     /gene="tmk"
                     /locus_tag="VNB68_00725"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: protein motif:HMM:NF014299.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004798 - thymidylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HVD35903.1"
                     /translation="MSNLRSKNLRKANFYGHAIPYLEKIEIKGKFIVIEGPDASGRST
                     QIELLSSKLEADGHAVMNAGLRRSELIAEGILEAKRSFVLGKRTISLFYAADFADQLE
                     NKIIPALRAGYVVLSDRYIYTLLARDAVRGISRAWSHNLYGFALKPDILFYLDVDPNE
                     LKHRVFEKNSSLDYYESGA"
BASE COUNT          650 a          333 c          400 g          543 t
ORIGIN      
        1 gtttacggga aggagttatt gcaggcttcc ttcgaaaccg tgattttttt aactatcaaa
       61 agtcagaaga cttggaaaag caaattccaa aaatagtttc tagtaattat gaacccaaca
      121 ttcaaaatat cgaactagac agtattctcc gacatatgat ctcctacgga tttctgaaag
      181 agagagaagt tgagatcttg tcattcgcaa tacagacact ggcaaaactc catgccacca
      241 acaaactcca tggcctattc tacatgatat tagacgaaga ttatccatat cttacacaca
      301 gagaacagct tgtattggcc ttgtctatag tacaatccaa aaaggcaaag acttccgatt
      361 ggttatattc taaatatagg tcaatattga aaccacaaaa tcagaaatca attcagaaaa
      421 taggaatctt gctcaaactg aatgatctaa ttgttaagag tcgatctaga attaaactta
      481 gagaatccaa gaataatgga attatcatag acatatcttc ttcaataaga tcttaccccg
      541 ctattctgct tcaaaatatt atccaaaggg tcagtgaggt ttttgggatt gtgatagaat
      601 gttatttgcc aaataatctc gacagaccaa tacataccga aaatgggatg attacagtta
      661 gatctaagta gggatttgtc atgacctata tgaaacaaca taggaaagaa agtgataata
      721 ataaaggtaa acttgttgtg gtcgaaggta tagacgggtc tggcaaatcc acacagatta
      781 gactgctcga aaaatggctt cgatcaaaaa atattcccgt gtttttgact gaatggaatt
      841 catcagagac ggtgaaacaa attacgtcga aaggcaagag aaaagggcga ctcacgccta
      901 ttactttctc tttgttacat gccactgatt ttgcagacag gtatgaaaga aatatacttc
      961 ccctcttgca atcaggatat gtagtactgg cagaccgtta tatttacact gcttttgcta
     1021 gggatatagt taggggctgt aatcctaaat gggttaggaa ggtttacgag ttcgcagtga
     1081 aaccggatat tgtgttctat tttagggtac ctgtagacat agctgtcgaa cgaatactgt
     1141 ctagcaggcc aaagttgaag tattatgagg caggtatgga tttaaatcta agcaacgatc
     1201 catacgagag ttacaggatc ttccaaagtc ggattattga acaatatgat aaacttgcca
     1261 cattagaaaa cttcaccata gtcgatggat taatggaaat cgaagaatct caaaaatctc
     1321 tgagatcact agctgctcaa ctttttccga caaggattcc gaatcgcaag aggaggtcgg
     1381 ttgcggtatg agtaatttgc gaagtaagaa cctgagaaag gcaaatttct atggacatgc
     1441 tattccgtat ctagaaaaaa ttgaaattaa gggaaagttt atcgtaatag agggccccga
     1501 tgcctctgga agaagtacac aaattgaatt gttatcttcg aaacttgagg cagatggcca
     1561 cgctgtgatg aatgcaggcc tcaggcgatc ggagctaata gccgagggga tattagaagc
     1621 aaagagaagt tttgttctcg gcaaaaggac cataagctta ttttatgcag cagatttcgc
     1681 agatcagctt gaaaataaaa ttatacccgc attaagagca ggttacgtag ttctatctga
     1741 caggtatatc tatactttat tggcaagaga tgcagttcgt ggtataagta gagcatggtc
     1801 acataacttg tatggttttg ctttaaaacc tgatatctta ttttacttgg atgtagatcc
     1861 caatgagttg aaacacagag tattcgaaaa gaactcttcc cttgattatt acgaatctgg
     1921 tgcgga
//
LOCUS       DATLQL010000068         1067 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_192091, whole genome shotgun sequence.
ACCESSION   DATLQL010000068 DATLQL010000000
VERSION     DATLQL010000068.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1067)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1067)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1067
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_192091"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            53..>1067
                     /locus_tag="VNB68_00730"
     CDS             53..>1067
                     /locus_tag="VNB68_00730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HVD35904.1"
                     /translation="MKVSNRTSEVEYAIRDIIVHAREYEKSGKQIIYLNIGDPVKYDF
                     KTPDHIKQALIDSVLHDFNYYTESEGLYELREAIVEKESRKGLSITAEDVLVTNGVSE
                     GLDMTMASIVEPNTEVLMPGPYYPPYASYAKFYGGRPVEFKLTPDGKPDLEDLISKIT
                     PRTRALCIISPNNPTGEVFDHKSLKQLVDIAAEHSLYIICDEIYDSLVFDGEFTGIGK
                     VAKDSPVILLNGFSKVYLMTGWRCGYICMNSNCSKLENIRNNIPKLARVRISTNLPVQ
                     KAAIAALRGPQDHIPMMVSKLRRRRDLVVKRLNQISSISCNVPKGAFYAFPKINLSSR
                     WKND"
BASE COUNT          353 a          196 c          224 g          294 t
ORIGIN      
        1 ataatttatg cataacaatt taactcagag attcttgttt agattacatt aattgaaagt
       61 atccaatagg acaagtgaag tcgaatacgc tattcgtgat atcatcgtac atgccagaga
      121 atatgaaaaa tctggaaaac aaataattta tctgaatata ggggacccag taaaatatga
      181 tttcaagact ccggatcata ttaaacaggc gttaatagat tcagttttgc atgatttcaa
      241 ttactatacg gaatcagagg gactttatga acttcgggaa gccatagttg aaaaagaatc
      301 acggaagggc ttatcaatta cagctgaaga cgttttggta accaacggcg tttcagaagg
      361 tttggatatg acaatggcat ctattgtgga acccaataca gaggttctca tgccgggacc
      421 atattatcca ccatatgcct cgtatgccaa attctacggg ggcagaccgg tcgaatttaa
      481 gctgacccct gacggtaagc cagacttgga agaccttata tcaaagatca cgccgcgtac
      541 aagagcttta tgcataatca gtccaaacaa tcccaccggt gaggtttttg atcacaaaag
      601 tcttaaacag ctagtcgata tagcagcgga acactcgctg tatattattt gtgacgaaat
      661 atatgatagt ttagtctttg atggagagtt tacgggaata ggtaaagttg caaaggactc
      721 gccagtgatt ttgcttaatg ggttctcgaa agtatatttg atgaccggct ggcgctgtgg
      781 atacatatgc atgaacagta actgttcaaa attagagaac attaggaata atattccaaa
      841 attagctaga gtacgtattt caactaattt gcctgtacaa aaagctgcta ttgcagcgct
      901 tagaggtcct caggatcata tcccaatgat ggtaagcaaa ttacgcagaa gaagagatct
      961 agtagtcaaa cgcctgaacc aaattagtag catttcctgc aacgtgccta aaggggcgtt
     1021 ctatgcattc ccaaagatca atctctcttc tcgctggaaa aatgata
//
LOCUS       DATLQL010000069         1565 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_192199, whole genome shotgun sequence.
ACCESSION   DATLQL010000069 DATLQL010000000
VERSION     DATLQL010000069.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1565)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1565)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1565
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_192199"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..309)
                     /locus_tag="VNB68_00735"
     CDS             complement(<1..309)
                     /locus_tag="VNB68_00735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35905.1"
                     /translation="MTQIKGFAMIILPNFFSIDCKERQIYEMLIGMIIVSHSNLKFTV
                     FWGCALLLILLVVSSSISVAEARNNHAKEENKQQQQLQQTNSCQGDRPLCIASNVAKM
                     I"
     gene            complement(542..1321)
                     /locus_tag="VNB68_00740"
     CDS             complement(542..1321)
                     /locus_tag="VNB68_00740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35906.1"
                     /translation="MIVFAVIANTAGIYAQQTPTNTTQVVVPSSTSSTPKLHLVKITS
                     PTKGQQVTTGKDLTVSGIAGTAVAATASAAARAFDGNKTSNCQVFVIANGVKPYQPAT
                     ATGPGGATDYSKWNFKLSSNYTEIKQGPNNKITAKYACSGTPPTLSFYSVNVTGVGSA
                     SLQNNSVVTNNSASRGNMGLISKSDNDGSNDRSIQHSPAATDPNTNKGESTPDVQASD
                     EMKGNIKNTPSVNPTLHGKINELKNALKENIKKQIESTPGQ"
BASE COUNT          431 a          299 c          301 g          534 t
ORIGIN      
        1 tatcatttta gctacattgc tggctatgca cagcggtcta tcaccttggc atgaattggt
       61 ttgttggagt tgttgttgtt gtttattttc ttcttttgca tggttatttc gggcctctgc
      121 cacagatata ctggaagaga caactaatag tatcaatagc aatgcacatc cccaaaatac
      181 ggtgaacttc aaattcgaat gactcacgat tatcattcct attaacatct catatatttg
      241 gcgttcttta cagtcaatgc taaaaaaatt tgggagaatt atcatagcaa aaccctttat
      301 ttgagtcatt aggtaaacag cttagtcggg cgacatgcat taaagaaaaa atgctatgtc
      361 gatcgataaa atgaaacgta ttccacctac atggaaccca acacgattac catcatgtct
      421 tcgtattctc aatctttaaa catcgtttat cctactctat cattattttc caagacaaca
      481 tgtggattca gactcgtgac aatcggagcc cacaaatgca tttgatgttc tctacctatt
      541 ttcattgacc aggcgtactt tcgatctgtt ttttaatatt ttcttttagt gcatttttca
      601 gttcatttat cttgccgtgt aaagtcgggt ttacgctagg ggtatttttg atgttgcctt
      661 tcatttcgtc agaagcttgg acatcaggtg tggattcccc tttattggtg ttgggatctg
      721 tagctgccgg actatgctgt atgcttctat cattcgatcc gtcgttgtct gatttactga
      781 taagacccat gttaccacgg ctggcagagt tattggttac tacagagttg ttctgtaggc
      841 tcgcagagcc tacacccgta acatttacgc tataaaatga tagtgtagga ggagtaccac
      901 tgcaggcata tttggctgta attttattat ttggtccttg ctttatttca gtatagttag
      961 aactaagttt aaagttccac ttggaataat ctgttgctcc accaggtcca gttgctgtag
     1021 caggttgata gggtttcaca ccatttgcga taacaaatac ttggcaatta gatgttttat
     1081 taccatcaaa agccctcgca gcagcactcg cagtagctgc aacagcagta ccagctattc
     1141 cagacaccgt tagatcttta cctgttgtta cttgttgacc tttagtaggg gaagttattt
     1201 tcacaagatg taatttggga gttgatgatg ttgatgatgg cactaccact tgcgttgtat
     1261 tcgtgggtgt ctgctgagca tatattccag cagtgttggc tataacagca aaaacaatca
     1321 tgctgacaat ggacaatcca cgaacgacca agtaattcat atatcatcaa ttgttgttgc
     1381 tgatatattt tgagttgaca tgattcttat tacgttttgt tattaaaatg tgtacatgcg
     1441 atattaaatt ctatatgtac tgcagtagct aaactagaac aactggcaaa caaatatgtc
     1501 cagcaaattc attaaaggat ttcttaccaa tgttcattca agaaaaaaaa ggggtttttg
     1561 actac
//
LOCUS       DATLQL010000070         1552 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_901503, whole genome shotgun sequence.
ACCESSION   DATLQL010000070 DATLQL010000000
VERSION     DATLQL010000070.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1552)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1552)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1552
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_901503"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(243..1145)
                     /locus_tag="VNB68_00745"
     CDS             complement(243..1145)
                     /locus_tag="VNB68_00745"
                     /inference="COORDINATES: protein motif:HMM:NF024989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HVD35907.1"
                     /translation="MDNFVVSGALPKLIPLPNHIPGAELSGVVEEVGSHVNNLTKGDR
                     VIIHNKVFDGTCDMCLNGLDMICRNGGLISVITNGGFAEYISVPERNVFKIPDNLDWD
                     LAASLPVTSLTPYHALQEASLKINEYLLVFGASGSTGMIAVQLAKKMGAKVIAVSKHE
                     WVRETDFGGADYVINDYGKVVDQVKEITQGKMADVVLNSLGIETWDSSYASIGINGRW
                     VTFGTLSGPDIKLNLQSLYTKQLKIIGSTGGSRGEMQEVIDMATSKQLKVKVWKKFKL
                     DNVKEATQALSSKQRDGRILLDII"
BASE COUNT          433 a          340 c          241 g          538 t
ORIGIN      
        1 actatttact cagaattatt agtcactgct attctaaagt caattgaagt ttgcttgcaa
       61 gttatcttgt aataataaat gaggcgcggc gcattccact tgaattggac tacatacact
      121 agtgtattgc attccaccga acccgctaca ctagtgtatc attttataag acaacatcat
      181 taaatacgat atgaccgttc aggtaacctc ccctgagtca ataagagtgt caccctatgc
      241 ttctatatta tatccaaaag aatcctgccg tctctttgtt ttgaagacag ggcttgtgtt
      301 gcttctttta cattgtcaag cttgaacttt ttccatactt tgactttcag ctgtttgctg
      361 gtagccatat ctataacttc ttgcatttct cctctactgc ctccggtgga acctattatt
      421 tttaattgtt tggtatagag tgactgaaga ttcaacttaa tgtctggccc acttaaagta
      481 ccaaatgtaa cccatcttcc gttaatacca attgatgcat agctgctatc ccatgtttcg
      541 atgcccaatg aattgagcac aacatctgcc attttacctt gcgtaatttc ttttacttga
      601 tctactactt ttccgtaatc atttatcaca taatcagctc ctccaaaatc agtttctctt
      661 acccactcat gctttgaaac tgcaatgacc tttgcaccca ttttctttgc taattgtact
      721 gctatcattc ctgtactgcc tgatgctccg aatacaagta gatattcgtt aattttaagt
      781 gatgcttcct gcaaagcatg atatggtgtt aaggatgtta caggtaagct tgcagccaaa
      841 tcccaatcca agttgtctgg tatcttgaac acatttcttt caggcacgga aatatattct
      901 gcaaatcccc cattagtaat tacactgatt agtccaccat ttcgacatat catatcaaga
      961 ccattaagac acatatcgca ggtgccatca aacactttat tgtgaataat aactctgtca
     1021 cctttagtca ggttattaac atgacttcca acttcttcta ctaccccact tagttctgct
     1081 ccaggtatat gatttggtag cggaattaat tttggaagtg cacccgaaac aacaaaattg
     1141 tcaataggat ttacaccggc aacttgactc ttataagtac atcatgatga tcagttaact
     1201 gtggttcttt gacattgtcc ctcgccctca gattttctaa ccccggagta tcaaaaatag
     1261 ctgccttcat ctctatcctc tatcacctct ttatatttat ttatgaattt ggattaccag
     1321 ttggtacgcc gaatctttta tcttcattta ctgaagtata cacaaacatc tacaatacag
     1381 ggtaattcaa tacaataagt aaatatcaag gtagaggaat tcctgttgtt tttaattgtc
     1441 tcatgacata atttacttca gaagctgtca caccttctat ggtaggtttc ctagtatggt
     1501 tttttgtacc atgatgataa ttgcgcacca tagtattgat gagttgggag at
//
LOCUS       DATLQL010000071         1654 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2500073, whole genome shotgun sequence.
ACCESSION   DATLQL010000071 DATLQL010000000
VERSION     DATLQL010000071.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1654)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1654)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1654
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2500073"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..283
                     /locus_tag="VNB68_00750"
     CDS             <1..283
                     /locus_tag="VNB68_00750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35908.1"
                     /translation="KAVRPLTTAKLMYLSTMIVLLAGMAALLAFTHLGPGDYSVYTSA
                     SGSERSVLSTEVGQTIVVLGILCAIFGVFVAGVLARKTVEPTQISRPVR"
     gene            complement(259..474)
                     /locus_tag="VNB68_00755"
     CDS             complement(259..474)
                     /locus_tag="VNB68_00755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35909.1"
                     /translation="MNKLKSSYLVDGVNATKSGPIDCLFLNNPMYLLIDEIDKMTAKG
                     VNERMNHVPIEQSIRITYFNHLTGLDI"
     gene            703..>1654
                     /locus_tag="VNB68_00760"
     CDS             703..>1654
                     /locus_tag="VNB68_00760"
                     /inference="COORDINATES: protein motif:HMM:NF015338.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HVD35910.1"
                     /translation="MRLATFNVENMFERPAAMNLPTLKDGEPFLEDYYRLLKLIGKQQ
                     YSNADKEQMLDIMKRNKGLLTVDKSDYIRLRVIRGKFLKKARGGPVEIIANGRGDWIG
                     WFELVPDIIKETAIENTGRVIRDVNADVFCFVEVEDRIALNHFNSTVIPKVHGKEYDH
                     VMLIDGNDDRGIDVGIMTRKQFDIETIASHVDDMDANGVIFSRDCPEYKINTPSGNTL
                     LVLINHFKSKGHGSQTENNNKRERQAKKVRDIYETNLNQGLEYIAVAGDLNDTPESDP
                     LRPLLGNGSTLTDIMKHNKFKDDGHPGTYANGSKSQKIDYI"
BASE COUNT          541 a          305 c          347 g          461 t
ORIGIN      
        1 aaaggcagta cggccattaa caactgcaaa attaatgtat ctatcaacta tgattgtcct
       61 tttagctgga atggcagcct tgttagcatt tactcatctt ggccccggag actatagtgt
      121 atatactagt gcatcaggat ctgaaagatc agtactatca actgaagttg gtcagactat
      181 agttgttctg ggtattctct gtgcaatatt cggagtcttt gtggcaggtg tcctagcaag
      241 aaaaacagta gaaccgactc aaatatcaag gccagtcaga tgattgaaat aggttatgcg
      301 gatgctttgt tcgataggaa catgattcat tctttcgttg actcctttag ctgtcatttt
      361 atcgatctca tctattagca gatacattgg attgttcaaa aataagcagt caatgggtcc
      421 ggacttagta gcatttacgc catcaacaag ataggaactt tttagtttat tcaaagatta
      481 caaatagctc gccaatttga gcctaggaat catgtcaaat ttgattcaca tagtctgcat
      541 aataaaaact gggaattcct ccacaggtaa agagttgtaa aatataatct gaatctcgaa
      601 ggtatcgttt tcagcgtcag gtgtagtcaa tatacaaagc tcctgaatta atcacaactg
      661 cagcttaggc attttaatat taatcttaga cgaagacatg ttatgcgttt agcgacattt
      721 aacgttgaaa atatgtttga acgccccgct gcgatgaatc ttcctacatt gaaggatggt
      781 gaaccattcc tagaagacta ttatcgactc ctaaaattga tcggaaaaca acaatattcc
      841 aatgcagaca aagagcaaat gttggatata atgaagagaa acaaaggatt acttactgtg
      901 gacaagagcg attacatccg cttgagagtc attcgaggaa aattccttaa aaaggcaaga
      961 ggcggacctg tcgaaattat tgccaatggt cgaggcgact ggataggttg gtttgaacta
     1021 gtccccgata ttatcaagga aacagcaatt gaaaacacag gacgtgtaat tcgggatgta
     1081 aacgcagacg ttttctgttt cgtagaagtg gaagaccgca tcgcacttaa tcattttaac
     1141 agtacagtaa ttccaaaggt ccatggcaaa gaatatgatc atgtgatgct tattgatggt
     1201 aacgatgatc gtggcataga tgttggtatc atgactagga aacaattcga cattgagacc
     1261 atagctagcc acgtagatga tatggatgcc aatggtgtga tctttagtcg tgattgccct
     1321 gaatacaaaa ttaatacgcc ttctggtaat acattgttag ttctcatcaa tcactttaag
     1381 agtaaaggcc acggttcaca gacggagaac aataacaaac gcgaacgtca agccaaaaaa
     1441 gtgcgagaca tttatgaaac aaatttgaat caaggattag agtatattgc ggtcgctggt
     1501 gatctgaacg acacccccga gagtgatcca ttacggccat tacttggcaa cggttcaacc
     1561 ctcactgata taatgaagca caataaattc aaagacgatg gccaccctgg cacttatgcc
     1621 aacggaagta agtctcagaa aatagattat attt
//
LOCUS       DATLQL010000072         1072 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_14332, whole genome shotgun sequence.
ACCESSION   DATLQL010000072 DATLQL010000000
VERSION     DATLQL010000072.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1072)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1072)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1072
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14332"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..918
                     /locus_tag="VNB68_00765"
     CDS             <1..918
                     /locus_tag="VNB68_00765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35911.1"
                     /translation="LPSGFQSVVSSRNKDTSVALSSFPTTNGGEVDAGQTFILYFPVK
                     ILQNAKVGKDYNAQLTVHYFKDTDKRKTNLEVEKNAKESSHLELTNQCSDNDDNTNKT
                     RSNTDRDIDAKTLHTRFDSKSQTINVPFELSGKVILDVIGSSQLQITTGNVSSSSNTI
                     NVLSAIPGVGNRLKLVINNDGSAAATGVIATVSARTEAATNNNIITPAIAGNISRNVV
                     QQSSVIPVIILGGTTFNLGTVPVAEGREIDTVVFPNNLAAGTLETLNVQLVYNDAYGN
                     KKVTNQVVGIQILPSSPQSELSVTPIPSS"
BASE COUNT          342 a          222 c          206 g          302 t
ORIGIN      
        1 ctaccatctg gatttcagtc agtcgtttct tctcgaaata aggacacatc tgtagcccta
       61 tcaagcttcc ctactactaa cggaggcgaa gtagatgcgg gacagacatt cattctatat
      121 ttcccagtaa aaatcttaca aaatgctaaa gtaggtaaag attacaatgc ccagcttact
      181 gttcactact ttaaggacac tgataaaaga aagactaatc tcgaagtaga aaaaaatgcg
      241 aaagagagtt ctcatctgga gctcactaac caatgttctg acaatgacga taatacaaat
      301 aaaacaagaa gcaatactga tcgcgatatt gacgcgaaaa cgctccacac tcgttttgat
      361 tctaaatcgc aaacgataaa tgttcccttc gagctgagtg ggaaggtcat tttagatgtg
      421 ataggttcct cacaacttca aatcactact ggaaatgtat cctcatcatc aaatacgatc
      481 aatgttttaa gtgctattcc tggtgttggt aaccgattaa agctcgttat taataacgac
      541 ggttctgcag cagctaccgg ggttatcgcg actgtctcgg cgagaaccga agccgcaaca
      601 aacaacaata tcattacgcc agccatagcg ggaaatatat caagaaacgt cgttcaacaa
      661 tctagtgtca tacctgttat tattttggga ggtactacct ttaatttagg tactgttccc
      721 gtagctgagg gtagagaaat agatactgtc gtttttccaa ataatcttgc cgcaggtacg
      781 ttagagactt tgaacgtcca attggtatat aacgatgcat acgggaataa gaaagtaacg
      841 aatcaagttg taggcattca gattttacct tcgtcgccac aaagcgaatt aagcgttact
      901 ccgatccctt cctcatgatc caagggaaaa attgagtaac tatgttacgc attattatta
      961 aacaacttgt cttgcattaa aataggagtc gtatggtgca tcattgctga tatgttgccg
     1021 ttttcatccc cgttgctgcc cttcaaatta gaaagatcta atgagatctc at
//
LOCUS       DATLQL010000073         1131 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1968379, whole genome shotgun sequence.
ACCESSION   DATLQL010000073 DATLQL010000000
VERSION     DATLQL010000073.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1131)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1131)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1131
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1968379"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..298)
                     /locus_tag="VNB68_00770"
     CDS             complement(<1..298)
                     /locus_tag="VNB68_00770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35912.1"
                     /translation="MTQCWKISVASEDYIKNWYGERTVNPNNNKQSVTAQNYTTNAIN
                     AVGSASTSINQTTSELGQNMSNAVGNAPEPANQTAERGENVSIARTNTSTALNKT"
     gene            complement(295..648)
                     /locus_tag="VNB68_00775"
     CDS             complement(295..648)
                     /locus_tag="VNB68_00775"
                     /inference="COORDINATES: protein motif:HMM:NF038353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxLYD domain-containing protein"
                     /protein_id="HVD35913.1"
                     /translation="MSALQVYRASASTNTEDDLVSGDVINSKYLAITYHKYVNHKGSD
                     IITGTIVNNSTKDISSVRIYAALYDKDNKLTSTESGIVNVPALTPTLTSPFTINLINT
                     PKPDHYTLLPGGTPS"
     gene            779..>1131
                     /locus_tag="VNB68_00780"
     CDS             779..>1131
                     /locus_tag="VNB68_00780"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HVD35914.1"
                     /translation="MQTSRSETTGGISSCHLGFMRTKKTLNIHNVNILDTTLDSDNQQ
                     PVFVAVIDDETDLGYLFKDALSQIDGVQVFAFTDPLLALEHFKANHQNYMVIISDYRM
                     PTMTGMELLSKIKDV"
BASE COUNT          309 a          196 c          234 g          392 t
ORIGIN      
        1 ctgttttatt cagagcagtt gatgtattag tgcgggctat cgatacgttc tctccacgtt
       61 cagcagtttg gtttgcgggt tcaggtgcat tgcccacagc gttagacatg ttctgtccca
      121 attctgaagt agtttgatta attgatgtac tagcacttcc tacagcgttt attgcatttg
      181 tggtgtagtt ttgagctgtc acactctgtt tgttgttatt ggggtttaca gttctttctc
      241 cataccagtt tttaatgtag tcttctgatg ctacggagat cttccaacat tgagtcaaga
      301 gggagtccca ccaggcaaca aggtataatg atcaggtttt ggagtattta taagatttat
      361 cgtaaaaggc gaagtcaagg taggagtcag tgctggaaca ttgacaatac cgctttctgt
      421 acttgtgagt ttgttatctt tatcatataa cgcagcgtat atccttacag acgaaatatc
      481 cttggttgag ttgttaacaa tagtgcctgt tataatgtca gaacctttgt ggtttacgta
      541 cttgtgatat gttattgcta aatatttgga attgataaca tcgccactta ctaaatcatc
      601 ttcagtgttc gtagatgcgg atgctcggta aacttgtaac gccgacatgg atattgttgc
      661 tcctaggaac agtatgaaaa tctttaggat tcgggaattt tctagttgca ttatctcttt
      721 ttttctttat tctaataaat tccgatgtga atatcatctg attccaaaga caattaattt
      781 gcagacatcc cgttctgaaa ctactggtgg gataagctct tgccatctag gatttatgcg
      841 gaccaaaaaa accttaaata ttcacaatgt caatattttg gacacaacat tggatagcga
      901 taatcaacaa ccagtgtttg tagctgtaat tgatgacgaa actgatctag ggtacttgtt
      961 taaggatgcc ttgagtcaaa ttgatggcgt acaggttttc gcttttaccg atcctttgct
     1021 tgcattggag cattttaaag ctaatcatca aaattacatg gtcataatct ccgattatag
     1081 gatgcctacc atgactggaa tggaattgct aagtaaaatt aaagatgtaa a
//
LOCUS       DATLQL010000074         1105 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2146014, whole genome shotgun sequence.
ACCESSION   DATLQL010000074 DATLQL010000000
VERSION     DATLQL010000074.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1105)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1105)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1105
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2146014"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            564..1007
                     /locus_tag="VNB68_00785"
     CDS             564..1007
                     /locus_tag="VNB68_00785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35915.1"
                     /translation="MLTSVTAGRTFAMEDPFASKVSASKLDQNNCRSGDVLKGAENKK
                     DLKLLSKCETARGIVHDVHKHMKDGDYKFQLDVQKKYKDLLNKGNNKKRIGGNLIVEI
                     VPKDRKSSDVYLPKSGDDVRVWGAWVKDKPEGWNEIHPAWKVVKK"
BASE COUNT          366 a          207 c          230 g          302 t
ORIGIN      
        1 ttccacagtg aggacaatct tcattatggt ttgtcatcat cacacaaggg tcttcaaacg
       61 attctctgtc cacctgatac tgacgggcgt tcacccaaac ccacaaggtg caaacatatc
      121 cctccattgt tcaaacgaat atctaccact tgttgctact tcctgaaccc tttgcttgtt
      181 tgaaagattc cgctttggca ttacaaccgt ctctatgact tatgtcatat tgtgtctgaa
      241 tctgctgctg acttgtatac acatagacac tattgacaag cgtgaaaaga aaaaaataga
      301 ggactgaagg accctactga ctacaggcaa gtatattggg taaccaaagt aaagatgcaa
      361 tatagcccgg aaggattttg attttcttac tgatagttac tcaagccgag tctctaataa
      421 atcacagcat aatatttgaa taataaatct ctctccatat gttattactt attccgtcct
      481 agtcgaaata tagttacaag tgaattacct gttgattgaa tcgtaaccca aaagtcatca
      541 tattttcagt tatatgtgtt gccatgttga catcagtaac ggctggtaga acattcgcca
      601 tggaagatcc tttcgcaagt aaggtatcgg cttcaaaact agaccaaaat aattgtagga
      661 gtggcgatgt tcttaaagga gccgaaaaca aaaaggattt gaagttatta tctaaatgtg
      721 aaaccgctcg tggaatagta catgacgttc ataagcatat gaaagatggc gattataaat
      781 ttcaattaga tgtacagaaa aaatacaagg atttgttaaa caagggaaat aacaaaaaaa
      841 gaataggtgg gaacctgata gtcgaaatag tgcctaagga cagaaagtca agtgacgtct
      901 acctaccaaa gagcggcgat gatgtccggg tgtggggcgc ttgggtaaaa gataaacccg
      961 aaggctggaa cgagattcat cccgcttgga aggtcgttaa gaaataaatt aatcgaaaaa
     1021 agaagggaac tgagggaccg accctactga ctacaggcca gcaagcgctc tgatttatag
     1081 tatttgcgat ttttgtgaag gttgt
//
LOCUS       DATLQL010000075         1201 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_14933, whole genome shotgun sequence.
ACCESSION   DATLQL010000075 DATLQL010000000
VERSION     DATLQL010000075.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1201)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1201)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1201
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14933"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1139)
                     /locus_tag="VNB68_00790"
     CDS             complement(<1..1139)
                     /locus_tag="VNB68_00790"
                     /inference="COORDINATES: protein motif:HMM:NF020129.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004421 - hydroxymethylglutaryl-CoA
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006084 - acetyl-CoA metabolic process
                     [Evidence IEA];
                     GO_process: GO:0010142 - farnesyl diphosphate biosynthetic
                     process, mevalonate pathway [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA synthase"
                     /protein_id="HVD35916.1"
                     /translation="MALVDTNQDSACMASNACLELMKKNNLHPNDIGRLYVATESSLD
                     ESKALNSFVVGMLEQVYGDGSFEHAGGIECKFACVSGSYAIYDNTNWIRAEENNDKAA
                     IVVVSDIAKYDVGSAGEYTQGAGAVALLIKEQPRLLALDPKVTSTIIKNEYDFYRPFG
                     KETPLVNGLYSNLLYLIQVRKAFDSYKEKAMRTGLIHLKDGESITDYIDLFTVHLPYR
                     RMGEKALAYLLRHEWRTLPRWQHVIKEIGFHEPILNDSRGTIESILADKEFMKADEQF
                     RKAFMQTSFYNEVYEKKMSSSLEASNSIGNLYTASMYMGLRSLLEYEYKKNHDIEGYR
                     IGFASYGSGSSAMVFSGVIQAGYKEIVKDMNLENEIGLRKKLSMD"
BASE COUNT          317 a          272 c          184 g          428 t
ORIGIN      
        1 tcatccatag ataatttctt gcgtaaacca atttcgtttt cgagattcat gtcctttact
       61 atttccttgt aacctgcttg aataactccg ctaaatacca tagcactgct gccacttcca
      121 tatgatgcaa atcctattct ataaccttcg atatcgtgat ttttcttgta ctcatattct
      181 agtaaacttc ttaatcccat atacatagac gccgtataca gattacctat gctgttagaa
      241 gcttcaagcg agcttgacat ttttttctcg tatacttcgt tgtaaaagga agtttgcatg
      301 aatgcttttc taaattgctc atcagccttc atgaactctt tatctgctaa aatggattct
      361 atagttcctc gactatcatt taatatcggt tcatgaaatc ctatctcttt aataacatgc
      421 tgccatcgcg gaagtgttct ccattcatgt ctcagtaaat atgcaagtgc cttttctccc
      481 attcttctat atggtaaatg cactgtaaac aaatcaatgt aatcggttat ggattcgcca
      541 tcctttagat gaatcaatcc tgttctcatt gccttttcct tataactatc aaaggccttt
      601 ctaacctgta ttaaatagag taaattggag tatagtccat ttacaagtgg agtttccttc
      661 ccaaacggtc tatagaaatc atactcattc ttgattatgg ttgaagtgac ttttggatct
      721 agtgcaagca atctaggttg ctcctttatt aaaagcgcta ctgctcctgc tccttgtgta
      781 tattctccag cagatcctac gtcgtatttg gctatgtcac tcacaacaac aatggcggct
      841 ttgtcattgt tctcttctgc tctaatccaa ttggtattgt cgtaaattgc gtaagatccg
      901 ctgacgcatg caaatttaca ttctattcct ccggcatgct caaatgagcc atcaccgtac
      961 acctgttcca gcatacctac aacaaatgag tttaatgcct ttgattcgtc aagacttgat
     1021 tctgttgcta catacaacct gccaatatcg ttaggatgta agttattctt cttcatcagc
     1081 tcaagacatg cattagatgc catacatgct gaatcctgat ttgtatctac cagcgccatt
     1141 ttttttatgc caatgccatg ttctaatttt tggggatcaa ttcctcttgc ctgagcaaaa
     1201 t
//
LOCUS       DATLQL010000076         1745 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2146313, whole genome shotgun sequence.
ACCESSION   DATLQL010000076 DATLQL010000000
VERSION     DATLQL010000076.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1745)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1745)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1745
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2146313"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..959)
                     /gene="gcvPA"
                     /locus_tag="VNB68_00795"
     CDS             complement(<1..959)
                     /gene="gcvPA"
                     /locus_tag="VNB68_00795"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: protein motif:HMM:NF001696.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004375 - glycine dehydrogenase
                     (decarboxylating) activity [Evidence IEA];
                     GO_process: GO:0006546 - glycine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase
                     subunit GcvPA"
                     /protein_id="HVD35917.1"
                     /translation="MDYIPTTENDKIEMLRQIGARTIDDLMVDLKPQISEGLSLSEPM
                     SELELVGHMKKLSQKNKILKYFIGAGAYNHYVPSAINHLLMRGEFLTGYTPYQAEMNQ
                     GTLQAIYEFQSFICLLTGMDVANASLYDGSSALAEAVLMSASYNGRNGVFVNDGLNPQ
                     YEQVLKTYCEGADLKIVDQIDEKTACIIVQNPDFHGNLENFQYLSDRAHQFGALFITC
                     VVEPTSLAIVTPPGNYGADIVVGEGQSFGIPINFGGPYLGFLAVRSALLKKIPGRVCG
                     MTTDSHGKKGFVLTLQAREQHIRRERATSNITTNVELMAIAST"
     gene            complement(1024..1431)
                     /gene="gcvH"
                     /locus_tag="VNB68_00800"
     CDS             complement(1024..1431)
                     /gene="gcvH"
                     /locus_tag="VNB68_00800"
                     /inference="COORDINATES: protein motif:HMM:NF002270.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein GcvH"
                     /protein_id="HVD35918.1"
                     /translation="MTEGKLKFTKEHEWVSITDEGLAVIGITDFAQEQLGDIVSIELP
                     KLGSRFRQMQAMAIIDSVKASSDIYCPLSGEIIQINEELYEHPEWINQSPYDSGWIVK
                     LKTSNTDEISGLLTLEKYNEFIGETEKSKEREK"
     gene            complement(1463..>1745)
                     /locus_tag="VNB68_00805"
     CDS             complement(1463..>1745)
                     /locus_tag="VNB68_00805"
                     /inference="COORDINATES: protein motif:HMM:NF020253.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycine cleavage T C-terminal barrel
                     domain-containing protein"
                     /protein_id="HVD35919.1"
                     /translation="GKKALETIQLNRKLVGFELLEKRIARQGNEVLLKGDGKVGIVTS
                     GTFSPTLKKSIGFCFIPTNVPTDQLIEINIGGKTYEARVKESTRFYRRK"
BASE COUNT          471 a          404 c          290 g          580 t
ORIGIN      
        1 atggtcgaag ctattgccat caattctaca ttcgtagtta tgttgctggt agctctctct
       61 cttctaatat gctgttctct tgcctgcaac gtcaaaacaa aacctttctt tccatgtgaa
      121 tcagtcgtca ttccacaaac tcttcctgga attttcttca atagagcaga cctaactgca
      181 agaaatccaa ggtaaggacc cccgaaattt atcggaatac caaatgactg tccttcgcca
      241 actactatat cggcgccgta atttccagga ggcgttacta ttgcaagaga tgtaggttca
      301 acaacacatg taatgaaaag cgcaccaaac tggtgtgccc gatctgatag gtactggaaa
      361 ttttccaaat ttccatggaa atccggattc tggactatta tacatgcagt cttttcatct
      421 atctggtcaa caattttaag gtctgcgcct tcgcaatatg ttttcaatac ctgttcatat
      481 tgagggttta agccatcatt tacaaaaact ccatttcttc cattgtacga tgctgacatc
      541 agcactgctt ctgctagggc agaagatcca tcatagagag atgcattagc cacatccatg
      601 cctgtaagga gacagataaa tgactgaaat tcgtaaatgg cctgaagtgt tccttggttc
      661 atttctgctt ggtatggtgt gtagccagta aggaactctc ctctcattaa aagatgatta
      721 attgcggagg ggacgtaatg attataagca ccagcaccga taaaatactt taatatcttg
      781 ttcttttgtg acaatttctt catatgacct acaagctcga gctcgctcat tggttcagag
      841 aggcttaatc cctcagagat ttgcggtttc aagtcgacca tcaagtcatc gatagttctc
      901 gccccgattt gccttaacat ctctattttg tcattttctg tggtaggaat gtaatccatg
      961 acctcttatc tgtctcccac ttttgacatt cctctgcaac tcataatttt gacatacact
     1021 atctcatttt tctcgttctt tgcttttttc tgtctcacca atgaattcgt tatatttttc
     1081 gagtgtcagt agccctgaaa tttcatcggt attcgatgtc tttagtttta caatccagcc
     1141 agaatcataa ggggactgat ttatccattc gggatgctcg tatagctctt cattaatttg
     1201 tattatttcc ccgctcaaag gacaataaat atctgaagat gcctttaccg aatcgattat
     1261 agccatcgcc tgcatctgtc taaatctgct ccccaacttg ggaagttcta tcgaaacaat
     1321 atcgccaagt tgctcctgag caaaatctgt tatgccaatt acagcaaggc cttcgtctgt
     1381 tattgatacc cattcatgtt cttttgtaaa ctttaacttt ccttcagtca caataataca
     1441 cctccatatc ccataaaaaa tcctattttc tcctataaaa ccgagtactt tctttgaccc
     1501 tggcctcata agtttttcca ccaatattaa tttcaattaa ttgatcggtt gggacatttg
     1561 tgggaatgaa acaaaagccg atagactttt tcaaagttgg cgagaaagtc ccgctagtta
     1621 caatacccac cttaccatcg ccttttaata atacttcatt accttgtctg gctatccttt
     1681 tttctagcaa ctcgaaacct acaagctttc tattcaactg gattgtttct aaagccttct
     1741 ttccg
//
LOCUS       DATLQL010000077         1726 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1969580, whole genome shotgun sequence.
ACCESSION   DATLQL010000077 DATLQL010000000
VERSION     DATLQL010000077.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1726)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1726)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1726
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1969580"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..358)
                     /locus_tag="VNB68_00810"
     CDS             complement(<1..358)
                     /locus_tag="VNB68_00810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycerate dehydrogenase"
                     /protein_id="HVD35920.1"
                     /translation="MRLKKWSVYVTRRILDPAIPMISKDCNVIVANHRGRPPTRSELL
                     KAVRNKDAILCTLSDKIDAKVMDAAGSNLKVISSYSTGVDHIDIKEATRRGIYVTFTG
                     DILTEATADLAFALILA"
     gene            624..>1726
                     /locus_tag="VNB68_00815"
     CDS             624..>1726
                     /locus_tag="VNB68_00815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AarF/UbiB family protein"
                     /protein_id="HVD35921.1"
                     /translation="MEDQAQAKQQIHSTHVNDKASIKNPSKIHVAKVVLKLLPIVINF
                     RRDRRKWVKHEGKNINEVKFRKHAKKALETFIELGPSYIKLGQWLSARADLLPLPYLE
                     ELSKLQDEVPPAEFSKVKPIIEAELGKIENIFESFNSLALSGASLGQVYLARYDNRDV
                     IVKVSRPNIETVIENDIFILRKILPLATRFIDPNLAFSAEGMLSQFIETVYEEMDYHV
                     EADNLITIKRNLAGDNTVIIPDVFLERTSKHVLTMEYIPGIKINDVVALDRMSIDRSR
                     LVTRVHRLFFKMLLRHSIFHADPHPGNISVANNGAIILYDFGMVGRLDNKTRLKLIRL
                     YLGLIDKDPARTVNVLMELGTLEATVNRYVVEKA"
BASE COUNT          570 a          314 c          340 g          502 t
ORIGIN      
        1 ctgcaaggat taatgcgaag gcaagatcag ctgttgcttc tgtaagtatg tcgccagtaa
       61 aagtaacata aattcctctc ctagttgcct ctttaatatc gatatgatcc actccggtgc
      121 tataggagct tataactttg aggttggatc ctgcagcatc cataactttc gcatctattt
      181 tatctgacaa tgtgcagaga attgcatctt tgttacgcac ggctttcaaa agctcacttc
      241 tagtaggtgg ccttcctctg tgatttgcaa caattacgtt acagtctttc gatatcatag
      301 gtattgctgg gtctaatatt cttctggtaa catacacgct ccattttttt agcctcataa
      361 acctattcca tctgtctcgt tatattgggt taattgaggt tcgtagcgaa gatagaaaga
      421 tataatacaa aataatatct agaaaataat tataccgcaa ttatttgccg tctagcagcc
      481 tacaaacgat attttctaaa cgttggatcg gatcattgaa actgaactgt gtgacgatct
      541 gaggtctcaa atctggggta aaataattaa acctgcttta gttaaaaaga agtcagttaa
      601 agaggaaggt agagagatta tatttggaag accaggccca agccaaacaa caaattcact
      661 caacacatgt aaacgataag gcatcaatta aaaatccatc gaaaatacat gtggcaaaag
      721 tagttttaaa gttactgccc attgtaatta actttagacg ggaccggaga aaatgggtta
      781 aacatgaagg aaaaaatatc aacgaagtga aattcagaaa acatgcaaaa aaggcgcttg
      841 aaacattcat tgaactgggg ccatcatata taaaattagg acaatggctc tcagcccgtg
      901 cagatctgct gccccttcct tatctagagg aactctcaaa actacaggat gaggttcccc
      961 cagcagagtt ttcaaaggtg aaaccaatca ttgaagctga acttggcaaa atcgaaaaca
     1021 tatttgaatc attcaatagc ttagcgctct ccggggcaag tctaggtcag gtctatttag
     1081 caagatatga caatagagat gttattgtaa aagtaagtag gccaaatatt gaaacagtta
     1141 tagaaaatga tatctttatc ttaaggaaaa tcctgcctct tgctactaga tttatagacc
     1201 caaacttagc gttttcagca gaaggcatgc tatcccaatt catagaaaca gtatacgaag
     1261 aaatggatta tcatgtagag gcagacaatt tgattacaat caaaagaaac cttgcaggtg
     1321 ataataccgt tataattcct gatgtattcc tagaaagaac ttcaaagcat gtattaacca
     1381 tggagtatat cccaggcatt aaaatcaatg acgttgtagc cttggacagg atgagtattg
     1441 atagatcaag gttagtcaca cgcgttcaca gactattttt caaaatgtta ttacggcata
     1501 gcatttttca tgctgatccc catcctggta atatctctgt tgctaataat ggcgcgataa
     1561 ttctttacga ttttggaatg gtaggtaggc ttgataataa aacacggctc aaacttatca
     1621 gattgtatct tggtttgatc gataaagatc ctgcgaggac tgtcaatgtg ctaatggagc
     1681 ttgggacgtt ggaagcaaca gtcaatcgtt atgttgttga gaaagc
//
LOCUS       DATLQL010000078         1654 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1437135, whole genome shotgun sequence.
ACCESSION   DATLQL010000078 DATLQL010000000
VERSION     DATLQL010000078.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1654)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1654)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1654
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1437135"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..345
                     /locus_tag="VNB68_00820"
     CDS             <1..345
                     /locus_tag="VNB68_00820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35922.1"
                     /translation="GQSVAGHWNASILGKRTANFSGVINIQNLIESSSKRYILYLEPM
                     PKEINYLDTGGNLTVIVKGNAKVNMESTESDVPILLIIHNMKEIYLLMIKNSESISDN
                     LFVYGKIAKRLS"
     gene            complement(437..832)
                     /locus_tag="VNB68_00825"
     CDS             complement(437..832)
                     /locus_tag="VNB68_00825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HVD35923.1"
                     /translation="MSFRKVGAVILLVNNMDNSIRFYRDTLELPVKSITAEWTEFFTS
                     GTVLALHPTTTKVKQSPSMLVGFMVSDLDAIATTLKKKNVKFFKEPKEESFGKHAIIE
                     DPDGHLISIAEIKSKLSEGFDLIGLIGAE"
     gene            985..>1654
                     /locus_tag="VNB68_00830"
     CDS             985..>1654
                     /locus_tag="VNB68_00830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HVD35924.1"
                     /translation="MLWVRIADSGVLVEERSRPSLGDGDILVKMHSCGLCGSDLEKVY
                     GKYAMQSARVGHEPAGEVVKVGKDVNKVDIGDRIFVHHHVSCYSCRYCLHGDYTMCDM
                     YQRSNIDPCGLSEEFVVPQWNISRGGIFKLPDNVSYEEAALIEPLACCIRGFNKISVK
                     DGDNVAIIGAGPTGMMHLLLAERAGANKIFVIDINEFRLKFARRYQNTLTFNPLQTKD
                     ISERI"
BASE COUNT          517 a          304 c          338 g          495 t
ORIGIN      
        1 ggacaatctg tagccggaca ttggaatgct tcgatcctgg ggaaaagaac ggctaatttc
       61 tcaggcgtga taaatattca gaatttgatc gaatctagct ctaagagata tattctgtac
      121 ttggagccga tgccaaagga gataaactat ttagatactg gtggcaatct aactgttatt
      181 gtcaaaggta atgcaaaagt taacatggag agtacggaat ccgatgtacc aattctactg
      241 ataattcata atatgaagga gatctatctt ttgatgatca agaatagcga atcgatctcg
      301 gacaatcttt ttgtctacgg aaagatcgca aaaaggttaa gctaatcgaa tagattcaaa
      361 gttggtaaaa taaaattctg ggagtaagaa aaatgcaaat aattggttgg aatctctcca
      421 tgccatagaa tttccctcat tcagctccga taagaccgat taggtcaaat ccttctgata
      481 attttgattt tatctctgct attgaaatca aatgaccatc aggatcttca attatcgcgt
      541 gcttcccaaa tgactcctct ttaggttctt taaaaaattt cacgttcttt ttctttagtg
      601 tagtggcaat cgcatccaag tcacttacca taaatcctac taacatgctg gggctctgtt
      661 taactttggt cgttgtagga tgcaaagcca agaccgtacc actcgtgaaa aattccgtcc
      721 attcagctgt aatgctctta actggaagtt caagagtatc tctataaaac ctaattgaat
      781 tgtccatgtt attgactaat agtattacag ctcccacttt tctgaaagac atcttactac
      841 cctctcaaaa gacctagtag tgctatccga attaagaact tatcgatgaa aaaacaagaa
      901 ttttgcacta ctattcagcc agaaatctga ttttgtttgc ttttctagat tcttatatat
      961 actagtcagt tagattgtgc ttccatgcta tgggttagga tagccgattc tggggttctg
     1021 gtagaggaac gaagtcgtcc aagcttaggt gatggcgata ttcttgttaa aatgcactca
     1081 tgcggcttat gcggatctga cctagaaaaa gtatatggaa aatatgcaat gcaatccgct
     1141 agggtaggtc atgaacctgc aggcgaagtt gttaaggttg gcaaggacgt caataaggtt
     1201 gacatagggg acaggatatt tgtacaccat cacgtgagct gctactcatg tcgatattgt
     1261 cttcatggcg attacacaat gtgcgatatg tatcaacgaa gcaatatcga cccttgtgga
     1321 ttgtctgaag aattcgtagt tcctcaatgg aatatttctc gcggaggaat attcaagttg
     1381 cctgataacg tctcttatga agaagcggcc ctaatagagc ctcttgcatg ttgcattaga
     1441 ggattcaata agatatccgt aaaagatgga gacaatgttg cgataatagg cgcgggacct
     1501 acaggtatga tgcacctatt attggcagaa agagcaggtg ctaataaaat atttgtgatt
     1561 gatatcaatg aatttagact aaaatttgct cggagatatc aaaataccct cacgttcaat
     1621 cccttacaaa ccaaagacat atctgagcga atca
//
LOCUS       DATLQL010000079         3937 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_727081, whole genome shotgun sequence.
ACCESSION   DATLQL010000079 DATLQL010000000
VERSION     DATLQL010000079.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3937)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3937)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3937
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_727081"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..282
                     /gene="tfb"
                     /locus_tag="VNB68_00835"
     CDS             <1..282
                     /gene="tfb"
                     /locus_tag="VNB68_00835"
                     /inference="COORDINATES: protein motif:HMM:NF012600.4"
                     /note="stabilizes TBP binding to an archaeal box-A
                     promoter; responsible for recruiting RNA polymerase II to
                     the pre-initiation complex; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription initiation factor IIB"
                     /protein_id="HVD35925.1"
                     /translation="IPVLHGTDYVTLIANRLRLSEKTKRDALRIYSLVQDNGISIGKN
                     PRALAGAVIYLASQNCNEFLRQVEICQVADISTVSLRKRCKEIKSAVNI"
     gene            515..1141
                     /locus_tag="VNB68_00840"
     CDS             515..1141
                     /locus_tag="VNB68_00840"
                     /inference="COORDINATES: protein motif:HMM:NF013621.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyltransferase/cytidyltransferase family
                     protein"
                     /protein_id="HVD35926.1"
                     /translation="MDPLDKAILVSIYSSGFDSGITPYDYFKGRTMVPEDLFNSRLKK
                     LNKLGFVDLTNPVSLSFLGRGSIKVVLVGGVFDILHPGHIHTLKAAKSYGDVLVAVIA
                     RTSTARKINSSRVIYHDEVLRKELVSSIKFVDVALIGFESTLYRTVEYVKPDIIALGY
                     DQAHGEKEIAMNCRKRGIDVQVIRLNTPIPKIKSTSIKEELGTSIYDI"
     gene            complement(1152..1841)
                     /locus_tag="VNB68_00845"
     CDS             complement(1152..1841)
                     /locus_tag="VNB68_00845"
                     /inference="COORDINATES: protein motif:HMM:NF014084.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DUF120 domain-containing protein"
                     /protein_id="HVD35927.1"
                     /translation="MRHIKLEYIVTLAKLLTKGAGREFIEATSTSIATEINKSQQAAS
                     KIILDLENLNFIERVKKGHGYRIHVTDEGLMAVKDVSSMLMTAVDFSTKSMMIEGTIV
                     SGVGEGGYYMALDGYRKQFRTKLGYIPYPGTLNVKILGNPSIRNREKIEYMPYIFIKG
                     FSDLKRTYGWVKCFPAIINDNSAIQAHLLLLERTHYDKSMVEIIAPEYLKGILGLANG
                     DGIKILVRVKD"
     gene            complement(1849..3090)
                     /gene="dnaG"
                     /locus_tag="VNB68_00850"
     CDS             complement(1849..3090)
                     /gene="dnaG"
                     /locus_tag="VNB68_00850"
                     /EC_number="2.7.7.-"
                     /inference="COORDINATES: protein motif:HMM:NF003108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase DnaG"
                     /protein_id="HVD35928.1"
                     /translation="MPNTGIVKYHVKLKFEVDGLVEKADIIGAIFGQTEGLLGPEMNL
                     NELQKVSKVGRIEVNVDSKSNMAKGDALIPMSTDISTAALIAAAIESIYKVGPFQAKF
                     SLVGIDDIRAIKKKIIVDRAKKIVQEWATKTISEGEEMLRDVYDASKPGKLTTFGNAQ
                     LACGTGVFESPLIILVEGRADVINLLRAGFDNAIAIEGAKIDESVTKLTSGKKVIAFL
                     DGDRAADLILKELHGLVNIHKVLRAPPGKEVEECTPLEISEILKEIAEPAQDQQVTLH
                     HQYPKSDRKQQSKYEPRDSEYHRPHNHDEKTKQMIENNPEILSTVKEVFPQINETLEA
                     VVLDNSMKTLLKIPVSDIVKKLDTAEGGKILVMDGIITQRLVDAADKVGIEYIVGHRT
                     GELKKSTDINIITFSQMGVGN"
BASE COUNT         1129 a          797 c          722 g         1289 t
ORIGIN      
        1 attccggtac ttcatggtac tgattatgta acgctcatag ccaatcgatt gaggctttct
       61 gaaaaaacaa aaagggacgc actgagaata tactcgcttg tgcaagacaa tggaatctct
      121 attggaaaga acccaagagc tctcgcagga gctgtaatat atcttgcatc acaaaattgt
      181 aatgagtttc tcagacaggt ggaaatatgc caagttgcag atatctctac ggtttcttta
      241 agaaaaagat gcaaagaaat caagtcagct gtgaacattt aacgcgtttg cgctcagtcg
      301 ccagttattt attctacttc gcgtcaaata tgacaacggc agatatctac tggagatctc
      361 atttcgtaat atgaatccat cttttggttt aaaatcccac gtctaagtta atccacccaa
      421 atagggttct gtcatgacat gtctacggtg cttgcaaatc aataaatatg aactaaatag
      481 gaatgaaaaa taattacatt gggaacggct tactatggac cctcttgata aagctatctt
      541 ggtatcaatt tattcttcag gatttgattc agggattacg ccttatgact attttaaagg
      601 cagaacaatg gttcccgaag atctcttcaa ctctcgattg aagaaactga acaaattagg
      661 atttgttgat cttacgaatc ctgtttcatt atcatttctt ggcagaggtt caattaaggt
      721 agtgttagta ggtggcgtct ttgatatctt gcatcctggt catatccata ctttgaaggc
      781 tgccaagtcc tatggggatg tcttagtagc tgttatagcc cgaacttcca cagctagaaa
      841 aatcaacagt tcccgagtaa tatatcatga cgaagtcctt cgaaaggaat tagtatcatc
      901 aataaaattc gtagatgttg ccctgatagg atttgaaagt acactttatc gaacagttga
      961 atacgtaaag cctgatataa tcgcactggg ttatgatcag gcacacggcg agaaggagat
     1021 agcaatgaac tgtcgaaagc gtggtatcga tgttcaggta ataagattga atacgcctat
     1081 tcctaaaata aaaagcactt ctataaaaga agaactaggt acatccatat atgatatcta
     1141 ggatgaggaa atcagtcttt aactctaaca agaatcttaa ttccatctcc attcgctaat
     1201 ccgagtatgc cttttagata ttcaggcgca attatttcta ccatgctttt gtcgtagtgt
     1261 gtcctctcaa gcagcaagag gtgagcttga atggcactgt tgtcgttgat gattgctggg
     1321 aagcatttca cccatccata tgtccgtttt aaatcgctaa atccttttat gaaaatatat
     1381 ggcatatatt caattttctc tctgttcctt attgaaggat tacctaaaat cttaacattc
     1441 agtgtaccag gatagggaat ataacctaat ttggttctaa attgttttcg ataaccgtca
     1501 agtgccatgt aatatcctcc ttcgcccaca ccagagacga tagttccttc tatcatcatt
     1561 gattttgttg aaaaatcaac agctgtcatc agcatagagg aaacgtcttt aactgccatt
     1621 agcccctcat cggtaacatg aattctatat ccatgaccct tcttgacgcg ttcgataaaa
     1681 tttaggtttt caagatctaa gattattttt gatgctgctt gctgtgactt attaatctca
     1741 gtagcaatac ttgtgctcgt agcttctata aattccctgc cagctccctt agtcaataat
     1801 ttggcaagag tgacaatata ttctagtttg atgtgccgca tttcattttt aattacctac
     1861 acccatttgg ctgaatgtaa taatgttaat gtcggtggat ttcttcaatt ctccagttct
     1921 gtgtcccaca atgtactcga ttccaacctt atccgcagca tcgactaagc gttgagttat
     1981 gatgccatcc attactagta ttttcccacc ctctgcagtg tcaagcttct taactatatc
     2041 agagacaggt attttcaata gtgttttcat agaattgtct aatactacag cttccaaggt
     2101 ttcgttgatc tgcggaaata cctctttcac tgttgacaaa atttcagggt tattttcgat
     2161 catttgctta gttttttcgt catgattgtg agggcgatga tattcgctat cacgaggctc
     2221 atatttcgat tgttgttttc tatcggattt cggatattga tgatgcaggg ttacttgttg
     2281 atcctgagct ggttctgcta tttctttgag tatttccgaa atctctaagg gagtgcattc
     2341 ttctacctcc ttcccaggag gtgctctgag taccttgtga atattaacga gaccgtgtaa
     2401 ttcttttaaa atgagatccg cagccctgtc cccatctaag aatgcgatga ctttcttacc
     2461 ggaggttagt ttggtaacac tttcgtcgat cttggctccc tcaatggcta ttgcattgtc
     2521 aaagcctgca cgtagcagat tgattacgtc cgctctacct tcaactaaaa ttataagtgg
     2581 tgattcaaac actccagtac cgcaggcgag ttgggcgtta ccaaacgttg ttagtttacc
     2641 gggcttacta gcatcataca cgtctctcaa catttcttct ccttcactaa ttgtttttgt
     2701 tgcccactct tgaactattt tttttgctcg gtcaacgatg atttttttct ttatagctct
     2761 aatatcgtca attcctacca gtgaaaattt agcctggaac ggtccaacct tgtatatgct
     2821 ttcgattgca gcagcgatta atgccgctgt tgagatatct gtactcatcg gaatcaatgc
     2881 gtcacctttt gccatattcg acttgctatc aacattcact tcgatcctcc caactttcga
     2941 tactttttgt agctcattga gattcatttc tggacccaat aaaccttcag tttgaccaaa
     3001 aattgcgcca ataatgtctg ccttttctac aagtccatcg acttcaaatt ttaacttaac
     3061 atgatactta actataccag tattaggcac tttctaaccc tcaaattgaa taatacgaag
     3121 cttaagtgcg tttggttgaa tataagtgct ttgaaatacg tatgtgaatc gccaattgtc
     3181 ataactttgg agatatgaca aagtccagtc caccgaacgc tagatattcc atctgacctg
     3241 agaccatctt atttatattc gaactctgat gcatcgtgac gtgcgctgat cgagtaccgt
     3301 ccaggtccaa attgatgccg atccgaaata ttttccaaat ggatttttcc aaaaatttta
     3361 atttcaagat tatgttacta ttaacaaaaa caaagtttaa ctacttccca aatcgcactt
     3421 tcgatttaga aaaacttttt caagagtagt ttgttttatt caaatatgat ctcattacgg
     3481 ttaagccccc acttgtgtac tgtgtttatc atcactcaac gaatttttaa tagttcctta
     3541 atggatcacg ttagcaatct tagaggtatc tgtcgactga aggtttgacg ccaccgagat
     3601 gaaatatatt tggtgtaatg tatgttggat gtctaagaaa atatgataga cggggattga
     3661 agctcaatga cacgaaggcg gaatcaagaa gaactagtac gttagcgtta ttagtacact
     3721 agctagttca ggcataatct actagtgaat actttggtta attagccact gggagaataa
     3781 aactctacat aaacgtaaac ttggcctcaa tttacacaca tggagctgag gacgatatga
     3841 tatgcataat agcatgatag cgtacagcta atgtcttcca agatcgattc gtgtttagaa
     3901 attcgtttga tatccgcccc acttccacct cagagat
//
LOCUS       DATLQL010000080         1151 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2325419, whole genome shotgun sequence.
ACCESSION   DATLQL010000080 DATLQL010000000
VERSION     DATLQL010000080.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1151)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1151)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1151
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2325419"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            358..963
                     /locus_tag="VNB68_00855"
     CDS             358..963
                     /locus_tag="VNB68_00855"
                     /inference="COORDINATES: protein motif:HMM:NF013003.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HVD35929.1"
                     /translation="MTKHASSTRVPTRLAASIVVVIVVTGLLLTTSIFSATHQVFAQD
                     TSGQITKGNIVKGDVKGGNITSGSIKNETITKGDLAGANITGATITGADITTAKNETS
                     QMKQGAKATAGQLTSGQITAGQISGGLMTKGKVTGGQVSGGKITGANVTEADLTGTEI
                     KGANISGAKVEAGNQTSGGSEILSKVPVIGKTLEKLNPFKK"
BASE COUNT          422 a          192 c          250 g          287 t
ORIGIN      
        1 aatgtctcca gcaaagataa gagaacatga accaacagca gtaaaaaggg aaatgacaga
       61 gagaatagtt gagccaggac agcaagaaac atcagatcct gaaaaagcaa gagaaatagc
      121 tagaagaagt ggtatggcta aaggaacagc tggtgcagaa gagtctgata gcgagtaaga
      181 acaaggagcg actggaataa acaagtaaaa tcatagccgg cataagaata cagttccttt
      241 aatttttttt gttattatct ttcttttttt gcaataaacc tttgatggat attgtcatca
      301 atactctaca gaacaatgaa actcttaaag cgtattgtgt gctattcgaa ggatagaatg
      361 acaaaacatg catcgtctac tagagtgcct actagactag cagcctcaat agtagtagta
      421 atagtagtaa ccggactatt attaacgact tcaatatttt cagccacaca tcaagtattt
      481 gcacaagata catcaggcca aataactaaa ggaaatatag tcaaaggaga tgtaaaaggc
      541 ggtaatatta catctggaag tatcaagaat gagacaataa caaagggaga tcttgctgga
      601 gctaacataa caggggcaac tataacaggt gctgacataa ctacagcaaa gaatgaaaca
      661 tcgcaaatga aacaaggagc taaagctact gctggtcaac taacctcagg tcaaattaca
      721 gcaggtcaaa ttagtggtgg acttatgaca aaaggtaaag taacaggtgg acaggtgagt
      781 ggaggcaaga taacaggagc taatgtaaca gaagcagatc taacaggaac agagataaag
      841 ggagctaaca tatcgggagc caaggtagaa gctggtaatc aaactagtgg cggtagcgag
      901 atcttaagca aagtccctgt gataggaaag acactagaaa agcttaatcc cttcaagaaa
      961 tagtaattgg gaaaaattcg taaggttgtt ttgcactaga atcccaactt cttttttttc
     1021 ttccttcttg gctttatttc accctagggt ccttgttgca attattgttg cgttttggag
     1081 ctgttttcag ttactaaatt gtagccatct ttatgcaaca caatgttaaa ttcgcctaga
     1141 aggtttcagc t
//
LOCUS       DATLQL010000081         1596 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_194490, whole genome shotgun sequence.
ACCESSION   DATLQL010000081 DATLQL010000000
VERSION     DATLQL010000081.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1596)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1596)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1596
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_194490"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            409..1443
                     /locus_tag="VNB68_00860"
     CDS             409..1443
                     /locus_tag="VNB68_00860"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HVD35930.1"
                     /translation="MKLFQSYKIFLLLAITISAFCLLDPERGYTLSSPTEKLGIEPQP
                     LTSIFKSIQDSVVQITRPSPFPPAIPNTTEQNTTAFGSGFIYDIEGRIITNSHVVGDS
                     KSVDVMFINGSRYFAKVIGKDVFNDIAVLEPVNFSGPFQPLRMGNSSKLEVGDQVIAI
                     GNPYGLAGSMTSGIVSQLGRLMTAQGTSFAIPDMIQIDALINPGNSGGPLIDLDSRVV
                     GMKTAGILSENGGFSGIGLAIPSNAITRIVPSIIEKGIFNHPWMGIAGETLTSDLTKL
                     FQNLSRNFQGVFIESLVKDSPADRAGMKGTLTDQYGQKHGGDIITGANGKKIIFIDDL
                     VSYIEDNKKL"
BASE COUNT          513 a          296 c          313 g          474 t
ORIGIN      
        1 aaaataactc atttaaaaca ctcaggatcc ataaatttcg gtgagaatca ttaatgcttt
       61 aaataccatg taagaaacgg tcaagccttc taaacctgac cagactaatt agtcaataac
      121 ttttttaatt cacttcgggc tttccgtcta atatgagttt cactaaagac cagaaatgca
      181 aatgtgggaa caaaaccttt cgcgtagcaa aagatcctgt tggtcaggat aacctgtcca
      241 cattttacat tgcatgtgca cagtgcggag aacatttcca cagtttcaaa atctgatttc
      301 gtagttaata aaaaattata ccatcatcat cattccagat ttattcttca aggttaggtg
      361 aaaggtttca cgaaatgtct attagtttgc ctaactttga tatcctgtat gaaattattc
      421 caaagttaca aaatcttcct tcttctggca ataacaatct ctgctttctg tctccttgat
      481 cccgagagag gttatactct ttcatcacca acggagaaac tcggaataga acctcagcct
      541 ttgactagca tttttaagag tattcaagat tctgtggttc agataacaag gccgtctcca
      601 tttcctcctg caattcctaa taccacagaa cagaatacta ccgcttttgg gtctggtttc
      661 atttatgata tagaaggtag aataattaca aacagtcatg tcgttggaga ttctaaatct
      721 gtggatgtaa tgttcataaa tggaagtagg tattttgcga aagtaattgg caaagatgta
      781 ttcaatgaca ttgctgtttt ggaacctgta aattttagtg gaccgttcca accactacga
      841 atgggaaatt cttcaaaact ggaagtagga gatcaagtga tcgccattgg taacccatac
      901 ggattggcgg gttcaatgac atctggaata gtgagtcaat tagggagact tatgacagct
      961 cagggtacat cttttgcaat cccagacatg atacaaatag atgctctcat taatcctggt
     1021 aactctggag gaccgttaat agatctagat tccagggtcg ttggtatgaa gaccgcgggg
     1081 atactgtctg aaaatggagg cttttcggga atcggactcg ctattccttc aaacgcaatt
     1141 actaggattg tcccatcaat aattgaaaaa ggaattttta atcatccgtg gatgggaata
     1201 gccggagaaa ccttgacatc tgatttgact aaactttttc agaatctgag taggaatttc
     1261 caaggtgtgt ttatagaatc gctagtgaaa gatagtcctg cggatcgcgc cggaatgaaa
     1321 ggaacactaa cggatcaata tggtcagaaa catggagggg atataattac tggtgcaaat
     1381 gggaagaaga taatcttcat tgatgattta gtttcctaca ttgaagataa caagaaactt
     1441 tgataacata actgtaatag tccatcgtga aagttcagat cttgatcttg agatcacgct
     1501 cggtgaaaaa ccattcccaa gcgtagtaaa tagaactact tcaccagaat acccataatt
     1561 gagtaatacc cgtttaaatc ataaagattc tgatgc
//
LOCUS       DATLQL010000082         1508 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1970401, whole genome shotgun sequence.
ACCESSION   DATLQL010000082 DATLQL010000000
VERSION     DATLQL010000082.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1508)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1508)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1508
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1970401"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            355..1119
                     /locus_tag="VNB68_00865"
     CDS             355..1119
                     /locus_tag="VNB68_00865"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HVD35931.1"
                     /translation="MTISKENDLTHVTSIPCNTVLKTSSQVTEAKRHLKALDLFPHHD
                     TIKSWDTYKMIDIIIKADRKSFILDVGCNDSPILPMLKRLGFRNLYGCDLVLQPRYKR
                     NFMNTIYSLFKREYKPVVDMHNDKPLKLSIQSLEETNYQSNTFDFVTSLSVIEHGVDI
                     HKYFKEMSRILKKGGLLLTSTDYWLEKITNTKHVLSRGAPDNVFDRNEIEDAIVIGEK
                     SGLKLIEPIDYTCMDKVVHWDQTGLDYTFIFFAMKN"
     gene            1219..>1508
                     /locus_tag="VNB68_00870"
     CDS             1219..>1508
                     /locus_tag="VNB68_00870"
                     /inference="COORDINATES: protein motif:HMM:NF014047.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAM domain-containing protein"
                     /protein_id="HVD35932.1"
                     /translation="MKGPRRHERNEKKGNRFGGSKAPKTPVSVGEEYNVKIEEMSRQG
                     MGVAKIDGFVILVNNTRPGHRVMIRITKVGSGFAAAEVFSQNRKKDPMQEIGS"
BASE COUNT          498 a          256 c          319 g          435 t
ORIGIN      
        1 attacacgtc catttcttcc taacaatatt cctaattttt ttcatgataa ttgtggttga
       61 atcattaaag caatgttgat actttgctaa gatgacaaat tatgaagtac aattaaagag
      121 ggatccgtga ttctaaatgt cgtttctgtg gagaaaatat tgaaaataag aacccgtgca
      181 gcaattcttc tcttgatgat gtaagacact attttgactt tggaaaacct ataatggtag
      241 acgtccaaaa tagcgaatcc agttggtctg tcaatctagt acctgagggt aagttcatat
      301 ttcaatgact tgtgctcatt ttatcattga acgtatatag gcaaagtgaa tggtttgaca
      361 atatcaaaag agaatgatct tacgcatgtt acatcaatcc cttgcaatac agtcttaaag
      421 acatcttctc aggtgacgga ggccaaacga catctcaagg cgcttgacct ttttcctcat
      481 catgacacga tcaagtcctg ggacacttac aagatgattg atattataat caaagccgat
      541 agaaaatcgt tcatactcga cgttggctgc aacgactctc ccattttgcc catgcttaag
      601 agacttggtt tcaggaatct ttatggttgt gatttggtct tacagcctag gtacaaacgc
      661 aatttcatga ataccattta ttcgctcttt aagagagagt acaagccagt agttgatatg
      721 cataatgata agcctttaaa actttcaatt caaagtttgg aggaaactaa ttaccaaagt
      781 aatacctttg attttgtaac ctcgttgtct gtaattgaac atggtgtgga tatccacaag
      841 tacttcaagg aaatgagcag gattctcaaa aaaggtggac ttttgttgac gtctacagac
      901 tactggctag aaaaaattac caacacaaaa catgttctct ctagaggagc tcctgacaat
      961 gtatttgata gaaatgaaat agaggatgct atagtgattg gcgagaaatc cggtctcaaa
     1021 ctgatcgaac cgatagatta tacatgtatg gacaaggttg tgcactggga ccaaacaggc
     1081 cttgattaca ctttcatttt ctttgctatg aagaattaat gagtagtact cgtcaagccg
     1141 agggtggata ctgtcaaaga ttgaaataga catcattatc tctaattagt gaggatcatt
     1201 ggatttgatt gatttgaatt gaaaggacct aggcgtcacg aaaggaatga aaagaaaggt
     1261 aaccgttttg gaggatcaaa ggcacctaaa actcctgtaa gcgttggtga agaatacaat
     1321 gtaaagatcg aagaaatgag cagacaggga atgggagtag ccaaaatcga tggcttcgta
     1381 atcctggtca ataatacaag gcctggacac agggtaatga taaggattac aaaggtggga
     1441 agtggttttg cagcggccga agtctttagt cagaatagaa agaaagaccc aatgcaggaa
     1501 ataggttc
//
LOCUS       DATLQL010000083         1211 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2326047, whole genome shotgun sequence.
ACCESSION   DATLQL010000083 DATLQL010000000
VERSION     DATLQL010000083.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1211)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1211)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1211
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2326047"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..297)
                     /locus_tag="VNB68_00875"
     CDS             complement(<1..297)
                     /locus_tag="VNB68_00875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35933.1"
                     /translation="MSTTILVSPEQCKQQATPSINLSEIFKCISDDKSLILFNSVAHM
                     NEKSEILISKLDMTRKQFYARMERLTRQGLIMRKGGQYHLTTLGKIIYHLQNTIG"
     gene            437..850
                     /locus_tag="VNB68_00880"
     CDS             437..850
                     /locus_tag="VNB68_00880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HVD35934.1"
                     /translation="MLKRVGAAILLIENMEKSVTFYRNILGMKIKHESPDWVEFVNES
                     GRAVLALHPKRTKSSGSPNMLVGFNVNDIENVCKQLEEKSVKFYKKLTEESFGKHAII
                     EDPDGHLISIAEIPAKDELGQIPYYHGFAPVEGLT"
     gene            complement(895..>1211)
                     /locus_tag="VNB68_00885"
     CDS             complement(895..>1211)
                     /locus_tag="VNB68_00885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35935.1"
                     /translation="SQQLNQESSISQILRTYAKQFKQIRNQYADGLEGRCVMGVIMSY
                     YGWDGKCITTAERRLYAALVALRQAGISKELLIELNDSGATFEEIADYLDRTHGLANS
                     NR"
BASE COUNT          378 a          220 c          236 g          377 t
ORIGIN      
        1 acctatagta ttttgaagat ggtaaattat tttgcccaat gtggtaagat gatattgtcc
       61 tccctttctc attatcaggc cttgtcgtgt taatcgttcc attcttgcat agaattgctt
      121 tcgtgtcata tccaatttag aaattagaat ttcactcttt tcgttcatat gagcaaccga
      181 attaaaaagt ataagggact tgtcatcaga aatgcatttg aatatctcag ataggtttat
      241 ggatggagtt gcttgttgtt tgcattgttc cgggctcact aaaatcgttg ttgacatata
      301 tatcattaat agaggcatgt atataaggat attgtgataa aatggcaaga ccacccaaaa
      361 gcgaacttaa gacaactgga ataggcaagg cataacacga ccaagtttaa atctctcaaa
      421 gacaaagaga aattagatgt taaaaagagt aggtgcagcg atactcctga tcgagaatat
      481 ggaaaaatct gtcacatttt atcggaatat tctagggatg aaaataaaac acgagtctcc
      541 agattgggta gagtttgtaa atgaaagcgg aagagcagta cttgcattgc atcctaaaag
      601 aacgaaatct agcggatcgc cgaatatgct ggtagggttt aacgtcaatg acatagaaaa
      661 tgtttgcaag caacttgagg agaaaagtgt caagttttac aaaaagttaa cggaggaatc
      721 ttttggaaag catgctataa ttgaagatcc tgatggccac cttatttcca ttgcagaaat
      781 tcccgctaag gatgaactag gccaaattcc atattatcat ggttttgctc ctgttgaagg
      841 tttaacatga tcaaatagta ctctgttgtt ggcaaagact ttaagttttg acgactacct
      901 attgctattt gccaacccgt gagttctgtc cagataatca gctatctcct cgaacgttgc
      961 accagaatca ttcagttcta tcaataattc tttactgatg ccggcctgtc tcaatgcaac
     1021 taatgcagca tataatcttc tttctgcggt agtgatgcat ttgccatccc aaccataata
     1081 tgacataatg acacccataa cacatcttcc ctcaagtccg tcggcatact ggtttctaat
     1141 ctgtttaaac tgttttgcgt atgtccgtag tatttgagaa atagatgatt cttggttcaa
     1201 ctgttgactc a
//
LOCUS       DATLQL010000084         1556 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1438427, whole genome shotgun sequence.
ACCESSION   DATLQL010000084 DATLQL010000000
VERSION     DATLQL010000084.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1556)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1556)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1556
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1438427"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            512..1408
                     /locus_tag="VNB68_00890"
     CDS             512..1408
                     /locus_tag="VNB68_00890"
                     /inference="COORDINATES: protein motif:HMM:NF019272.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kelch repeat-containing protein"
                     /protein_id="HVD35936.1"
                     /translation="MSSSSTTESFWTTGAPLPSPRSEIAGAILESKIYIIGGFDESGR
                     SSTTVDVYDPVTDQWTSATPLPRPLDHTAAASHNGKLYVIGGGYLNRDDLSNKLFIYD
                     HTSNKWTEGANLPTARGALTANFINGILYAVGGVDKSETLTSTLAYDPRNNTWTEKAP
                     MPTAREHLTSATKNGKLYVNGGRTAGMSTNLDANEVYDPANNKWTILQPMLSKRGGLA
                     SATAVNETIYVFGGEQPSGTFNNNEKYDPDTNKWTSQEPMPTARHGLAAVVANDGKIY
                     VIGGGREPGGSGSNLNEIFHVR"
BASE COUNT          511 a          282 c          310 g          453 t
ORIGIN      
        1 attccttcat atcgatatag tttaacagta taatcatact tataaccaaa gaagctactt
       61 tagaaccggg agagggagga ttatcaagaa ttggtaatat accgtaccca taccgtacta
      121 agcgcttcaa atttctgaca agtgaaaata ccactataaa ttacatctca aatgtaatag
      181 ctagatggtc attataagag atagcgttct taaatttaga gtaactggat aatcctactg
      241 cttcgataaa agaaggttcc tttgtatcat catcatcttt ctgatatttt tagataaaat
      301 attctccgtt gggctaaact ggaatgccaa agttacttga tgtacacaat ctattttttg
      361 atgctcagaa ttcacctgag taattttatt agggtaagca catcttgtat tatccatgct
      421 aggatccgta ttatcagtga gatcaatacc aattttatca atcctgatgt ttgccgtctg
      481 tgtcgtatcg atctctagtg gtcaaatagt aatgtcatca tcttctacta cagaatcgtt
      541 ttggactact ggggcgcctc tgcctagtcc aagatcagaa attgctggcg ccattttaga
      601 aagcaagatc tacattattg gtgggtttga tgagagtggt cgaagcagta ctactgtgga
      661 tgtatatgat cctgtgacag atcagtggac tagtgcaact cctttgccac gaccattaga
      721 tcatacagca gcagcatcac ataatggaaa actgtatgta attggaggag gatatttgaa
      781 tagagacgat ctatcaaaca agctatttat ctatgaccat acttccaaca aatggacaga
      841 aggagcaaat ctgcctactg cacgaggtgc attaactgct aattttatta atgggatttt
      901 gtatgcggtg ggtggagttg ataagtcaga aaccttaacc agtaccttgg catatgatcc
      961 aaggaataat acttggacag aaaaagcacc tatgccaact gcaagagaac atcttacatc
     1021 tgcaacaaaa aatggaaaat tatatgttaa cggtggaaga actgctggta tgtcaactaa
     1081 tcttgacgct aatgaagtat atgatcctgc taataacaaa tggacaatat tacaaccaat
     1141 gctttctaaa agaggtggat tagcttctgc tacagcagtc aatgaaacta tctatgtatt
     1201 tggtggagaa cagccaagtg gcacgtttaa caataatgaa aaatatgatc cagatactaa
     1261 caagtggaca tcccaggaac caatgccaac tgcacgacat ggattagcag cagtagtagc
     1321 taatgatggt aaaatatatg tcattggtgg cggccgagag cctggggggt cgggtagtaa
     1381 cttgaatgag atattccatg ttcgataagt aaagccgctt aagcaatttt ttaatataca
     1441 ctcaaaagca caaatattag agtgtacaag tgaagccatt tccggtttta cattagcacc
     1501 catgaaactg gagactgcgc tatctatata catcttacac atcttgcagc tagtta
//
LOCUS       DATLQL010000085         1044 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_728374, whole genome shotgun sequence.
ACCESSION   DATLQL010000085 DATLQL010000000
VERSION     DATLQL010000085.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1044)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1044)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1044
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_728374"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..210
                     /locus_tag="VNB68_00895"
     CDS             <1..210
                     /locus_tag="VNB68_00895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35937.1"
                     /translation="KLEKVLKSFSQSQKNQMYRIGYLIGVHLVFSILSPTILLKRAKL
                     TSIQTNYLRGGPDGISDSIDIYRIS"
     gene            231..>1044
                     /gene="hisG"
                     /locus_tag="VNB68_00900"
     CDS             231..>1044
                     /gene="hisG"
                     /locus_tag="VNB68_00900"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003879 - ATP phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HVD35938.1"
                     /translation="MATVKFAVPKGSIEEATFKILEEAWQKVTGRGRTYRVKLSDPEI
                     DVKILRPQEIPTYVQEGFYDIGITGKDWIREANADVKLLLDLEYGHVRQVIAVPENFQ
                     ANNVTELIEDFAKQKRVLKISTEYLTTASSYMRSNPVYQKFFGSAEPIIITPWLRVGT
                     NRQVEIFLSFGATEAKPPEDVDAILDITETGTTLTQNNLKIIETVFESSAVLIANKNS
                     LNDPVKAEKIADMVALLKGVVEARKKLHIFVNVKEENLKILLENLPALRRPTI"
BASE COUNT          355 a          182 c          227 g          280 t
ORIGIN      
        1 aagcttgaga aagtgctcaa aagttttagc cagtcacaga aaaatcagat gtataggatt
       61 ggttatttaa ttggcgtcca tctcgtcttt tcaattttaa gtcccacaat acttctaaaa
      121 agagccaagt tgaccagtat ccagaccaat tatttaagag gtggtcctga cggaatatca
      181 gattcaatag atatatatcg gatatcatga atcatttatt taccatctaa atggccacag
      241 tgaaatttgc ggtaccaaaa ggtagtatcg aagaagcgac attcaaaata ctggaggaag
      301 catggcagaa agttaccgga cggggtagaa cgtatagagt gaaactgagc gatccagaaa
      361 tcgatgtgaa aattctacgt ccgcaagaaa tacccactta cgtacaggaa ggattctatg
      421 atattggaat tactggaaag gattggatta gagaagcaaa tgcggatgtt aaattattgc
      481 ttgatcttga atatggtcat gttagacagg taatagcagt tcctgagaat tttcaagcta
      541 acaacgtaac ggaactaatt gaggactttg caaaacaaaa acgagtgcta aagatctcca
      601 cagagtatct tactactgca tcttcttaca tgcgttcaaa tccagtttac cagaagtttt
      661 ttggcagtgc cgagcccata atcattacgc cttggttgag ggttggaaca aacaggcaag
      721 tagaaatctt tttgtcattt ggggccacag aagccaaacc gcctgaagat gtagacgcaa
      781 tcctcgatat aacagagact ggcactacgc ttactcaaaa taatttgaaa ataattgaga
      841 ctgtttttga gtcaagcgcg gtattaattg cgaacaagaa ttcgttgaat gatcccgtta
      901 aagctgaaaa gattgccgac atggttgcgt tattgaaggg cgttgtagaa gctcgaaaga
      961 aactacacat ttttgtaaat gtaaaggaag agaacttgaa gattctactt gaaaacctac
     1021 ctgctttgag gcggccaacg ataa
//
LOCUS       DATLQL010000086         1007 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1971528, whole genome shotgun sequence.
ACCESSION   DATLQL010000086 DATLQL010000000
VERSION     DATLQL010000086.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1007)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1007)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1007
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1971528"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..279
                     /locus_tag="VNB68_00905"
     CDS             <1..279
                     /locus_tag="VNB68_00905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="quinoprotein glucose dehydrogenase"
                     /protein_id="HVD35939.1"
                     /translation="QYENTVFIGDVNTGNLYNFKLDADRTGLLLNGALEDKIADTHDE
                     LQSVIFGQGFGVITDIQVGAGDGYLYVLTYDGSIYRIVPATGGATSSS"
     gene            415..792
                     /locus_tag="VNB68_00910"
     CDS             415..792
                     /locus_tag="VNB68_00910"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine-R-sulfoxide reductase"
                     /protein_id="HVD35940.1"
                     /translation="MNHNKLNPEEERVIIHKATEAPFTGQYDNFYEDGTYICRRCNAP
                     LFSSKSKFDAGCGWPSFDDSFPNAIRRVPDPDSIRTEIECATCNAHLGHEFAGEGLTD
                     KNTRECVNSLSLHFIPNGKELPK"
     gene            796..>1007
                     /locus_tag="VNB68_00915"
     CDS             796..>1007
                     /locus_tag="VNB68_00915"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008113 - peptide-methionine (S)-S-oxide
                     reductase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase"
                     /protein_id="HVD35941.1"
                     /translation="MNDNNSDNTEIATLANGCFWCSEAIFKRLKGVKSVLPGYSGGIV
                     KNPSYNQVCTGKTGHAESIQIEFDPKV"
BASE COUNT          345 a          166 c          215 g          281 t
ORIGIN      
        1 caatatgaaa atactgtctt cataggagat gttaacactg ggaatctata caactttaaa
       61 ttagatgcag acagaacagg attattgttg aatggcgcac ttgaagataa aattgcagac
      121 actcatgatg agcttcaatc agtaatattt ggacagggtt ttggtgtaat tacagatata
      181 caagttggtg ctggggacgg atatctgtat gttcttactt atgacggtag catttataga
      241 atagtacctg ctaccggtgg tgctacttct agctcttgag gctgataatc aagcaataaa
      301 ttatgaaatt tgtagctaat ggcgatgtta ttacacaatt ttttctatgg atactttgtt
      361 acgggtatag gacagcaaaa ggttcaaaat cttatgtggt tatagataga gtacatgaat
      421 cacaataaac ttaacccaga agaagagaga gtcatcatac ataaagcaac agaagctcct
      481 tttacaggcc agtatgacaa tttttatgaa gatggtacgt atatctgtcg aaggtgtaat
      541 gctcctctct tttcatcgaa aagcaagttt gatgctggat gtggatggcc aagctttgat
      601 gatagcttcc caaatgcaat aaggcgtgta cctgatcccg atagcataag aacagaaata
      661 gaatgtgcaa cttgtaacgc acatttagga catgaatttg caggagaggg tctgacggat
      721 aaaaatacta gggaatgtgt caattcacta tctctacatt ttataccaaa cggaaaggag
      781 ctgccaaaat aatgtatgaa tgataacaac agcgacaaca cagaaatcgc aacgcttgcc
      841 aatggatgtt tttggtgtag cgaagcaatc ttcaagagac tcaaaggtgt caaatctgtt
      901 ctacccggct attcaggagg aatagtaaaa aacccttcat ataaccaagt ttgcacagga
      961 aaaacaggac atgcagaatc aattcagata gaatttgatc cgaaagt
//
LOCUS       DATLQL010000087         1463 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1971551, whole genome shotgun sequence.
ACCESSION   DATLQL010000087 DATLQL010000000
VERSION     DATLQL010000087.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1463)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1463)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1463
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1971551"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..626
                     /locus_tag="VNB68_00920"
     CDS             <1..626
                     /locus_tag="VNB68_00920"
                     /inference="COORDINATES: protein motif:HMM:NF013595.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35942.1"
                     /translation="YTVELANHRVQKFDGNGTFITKWGFGDTGGAGANRRPHQLAVDS
                     HGYVYLTDRGGSEVLKFNNIGRFMEEWGTHGSGDKQFVKPHGIAFDSEDNMYITDMGN
                     SRVQKFHRNGTFILTWGSYGTGNGQFSDSIPGIAVDSKGFVYVIDRLESRIQKFDGMG
                     TLIAKWGAKGSSLGDLNKPEDIAINNKTGEVFITDTQNSRVQVFQMK"
     gene            872..>1463
                     /locus_tag="VNB68_00925"
     CDS             872..>1463
                     /locus_tag="VNB68_00925"
                     /inference="COORDINATES: protein motif:HMM:NF028479.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-bladed beta-propeller"
                     /protein_id="HVD35943.1"
                     /translation="MEKNQYLIFVLPILVSSFAVVSIVTSACVPASAQNITTGKDVLL
                     NYSFIEKWGSFGTGPGQFNRPHDIAFDSMGNVYVSDRDNNRIQKFTHNGTFIKTWGSK
                     GDKNGQLSIPYSIALDDLDNIYVADRENSRIQKFDTNGTFLAKYGTDGKLDGQFHRPE
                     DVRIEPRTGDIYVTDTYNNRIERFDKNFTFITKWGSK"
BASE COUNT          472 a          247 c          319 g          425 t
ORIGIN      
        1 tttacacagt agaacttgca aatcaccgcg ttcagaaatt cgatggtaat ggtactttta
       61 ttacaaaatg gggtttcggt gatactggcg gcgcaggagc caatcgcaga cctcaccaat
      121 tggctgtaga ttcccatgga tacgtttacc tcacagatag gggaggatct gaagttttaa
      181 aattcaataa tataggaagg tttatggaag aatgggggac gcatggatca ggagacaaac
      241 aattcgtgaa accacacggt attgcttttg actcggaaga taatatgtac atcacggata
      301 tgggaaactc aagagtccag aagttccata ggaatggtac gtttatttta acatggggtt
      361 cctacggtac tggaaatggt caattttcag acagcattcc tggaattgcc gttgattcta
      421 aaggatttgt atatgtgatt gatagattgg aatctcgtat tcaaaaattc gacggcatgg
      481 gtactttgat agcaaaatgg ggtgctaaag gttcttcttt aggtgacctt aataaacctg
      541 aggatattgc cataaacaac aaaactggcg aggtctttat tacagacacc cagaattcta
      601 gagttcaagt gttccagatg aagtgagata aagaaaggta caaaaatagc gcttggttgt
      661 gatttctgac gaggttctat taccggtgaa acccctcgtg tgctaaaatt tgcaaaaagc
      721 gagggtactt ctgttgtgtt tcatgtaaat cggaatatga agtaaatcta ctttggaatt
      781 atgcatactt tacagttttt taaccctata cacttagata gatgtatcag atcacttaac
      841 taatcgaaaa ccaataagca cacatctctg aatggaaaaa aatcaatact taattttcgt
      901 tttacccata ttggtatcat cttttgctgt tgtttcgatt gttactagtg cttgtgttcc
      961 agcttcggca caaaatatca cgacaggcaa ggacgtacta ttgaattact catttataga
     1021 aaaatggggt tcatttggca caggtcctgg ccaatttaat agacctcatg acatagcctt
     1081 tgattccatg gggaacgtct acgtgagtga tagggataac aatcgtatcc agaaatttac
     1141 tcacaatgga acattcataa aaacatgggg ttcaaaaggt gacaaaaatg ggcagttgag
     1201 tattccgtat agtatagcct tagacgattt agataatatt tatgtagctg atagagagaa
     1261 ctcacgcatc cagaagtttg atactaacgg tacttttcta gcaaagtatg gtactgatgg
     1321 caaactcgat ggacaatttc atagaccgga agatgttcga atagagccac gtacaggtga
     1381 catctatgtc acagatacat acaataatcg gattgagagg tttgataaga actttacatt
     1441 cataacaaaa tggggatcca agg
//
LOCUS       DATLQL010000088         1114 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_728840, whole genome shotgun sequence.
ACCESSION   DATLQL010000088 DATLQL010000000
VERSION     DATLQL010000088.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1114)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1114)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1114
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_728840"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..678)
                     /locus_tag="VNB68_00930"
     CDS             complement(<1..678)
                     /locus_tag="VNB68_00930"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HVD35944.1"
                     /translation="MKSIAFGTHLPVMEFVRKETISREQLISFAQKAEELGYDSLSVN
                     DHIVFRTGWLDAISSLSAIAATTHRIKIGTSILNIVIRNPVICAKALSSIDILSSGRL
                     FVGLGPGSHKGDYDACGIPFEDRWKRFSEALEVIHALWNDEDESKSSLVDYEGKYYRL
                     KGVSIDPKPFQKPRPPIMIASWGSEQGLRRVAKYGDGWMASAYNITSDKFKEKWNLLL
                     TYRRELNK"
     gene            complement(872..>1114)
                     /locus_tag="VNB68_00935"
     CDS             complement(872..>1114)
                     /locus_tag="VNB68_00935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35945.1"
                     /translation="LSCINFAIFGYNHRVLQTFLSTITKPNQCNYGAGVSSRKSKLPF
                     QSQNKLKSKNPTDSRIGIRILLFHLGVHTSYGNLFY"
BASE COUNT          327 a          230 c          187 g          370 t
ORIGIN      
        1 cttattcagc tctcttctat aagtcagaag tagattccat ttctccttga atttgtccga
       61 tgtaatgtta taagctgatg ccatccagcc gtctccgtac tttgctaccc ttcttaaccc
      121 ttgttctgaa ccccaacttg ctatcatgat gggaggacga ggtttttgaa acggtttagg
      181 gtcaatagac acgcctttca atctatagta tttaccttca taatctacta acgatgattt
      241 agattcatct tcgtcgttcc aaagtgcgtg aataacctct aaagcctcag aaaacctctt
      301 ccaccgatct tcaaaaggaa ttccacaagc atcatagtct cctttatgcg aacctggacc
      361 caagcctaca aataatctac ctgaagataa aatatctatt gaggataaag ctttagcaca
      421 gataactgga tttcttatta ctatgttcag tatagatgta ccaattttta ttctatgagt
      481 agtagcagca attgctgata gtgaacttat tgcatcaagc caaccggttc tgaaaactat
      541 gtgatcattt acactcaatg agtcatatcc taattcttcc gccttttgtg caaacgagat
      601 taactgttct cgtgatatgg tttcttttcg tacgaattcc atcacgggta gatgtgttcc
      661 gaaggcaatt gatttcatca acatcttaat gtaaatgata catatagttg tagattatta
      721 acagtggcaa agtatttgga aactgggtct tcttttaggg tctagtctgc aaccaattct
      781 accgaacccg gatcgacgtt atttctttcc tgctgagatc ttaatagtct gttatcatta
      841 tctctgctta atataaacac tacagttcct ctcaataaaa caaattacca taggaggtat
      901 gaacccccaa atgaaacaag aggattcgaa tcccaatccg agaatcggtc ggattttttg
      961 attttaactt attctgactc tgaaaaggga gtttactttt cctactgcta actccagcac
     1021 cataattaca ttggttgggt tttgttatcg tcgaaagaaa agtttgtaat actctatgat
     1081 tatatccgaa tattgcgaaa ttaatgcacg atag
//
LOCUS       DATLQL010000089         1232 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1972047, whole genome shotgun sequence.
ACCESSION   DATLQL010000089 DATLQL010000000
VERSION     DATLQL010000089.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1232)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1232)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1232
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1972047"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..939)
                     /locus_tag="VNB68_00940"
     CDS             complement(<1..939)
                     /locus_tag="VNB68_00940"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HVD35946.1"
                     /translation="MDIEQRLDLVKRQPTEEIVLLGELRKLFETVNRPRHYIGLEISG
                     KLHLGSLILTGYKINDFLNAQVECNVFLADWHTYINNKLDRDWEKIKEVSEYYSEAFK
                     FFCPGVNVIMGSSMYDTSNEYWKDFVKFSKHMTLSRTMRALTIMGRTEKENLDFSQLL
                     YPSMQSVDIRTLDLDIVHAGLDQRKIHMLVREIFPKLGWKVPVSVHHHLLPGLSEPSK
                     LGLTEDSTQDSSISSKMSKSQPSSSITIHDNESSIRNKINKGYCPVGISQNNPILEII
                     RYVIFHEFSEFEIERDSKYGGNIAYIHPSELETDYRG"
BASE COUNT          355 a          241 c          234 g          402 t
ORIGIN      
        1 cccccgatag tcagtctcta attccgaggg atggatatac gcaatattac ctccatactt
       61 gctatctctt tcgatttcga actctgagaa ctcatgaaat attacgtaac gaatgatctc
      121 cagtatagga ttattctggg aaattcctac cgggcagtat cctttattga tcttattccg
      181 tatggaggat tcgttatcat ggatagtgat actacttgac ggttgacttt tactcatttt
      241 actagaaata ctagaatcct gagtagaatc ttcggtgagc cccagttttg acggttctga
      301 gagtccaggt aatagatgat gatgtaccga aactggaact ttccaaccta actttggaaa
      361 tatctctctg acgagcatat ggatttttcg ttgatctagg cctgcatgga ctatatctag
      421 gtcaagggtt cttatatcta cagattgcat tgaaggatac agcagctgcg aaaaatcaag
      481 attctctttc tctgtccttc ccattatagt caaggctcgc attgtccttg ataatgtcat
      541 gtgtttagag aacttcacaa aatccttcca atattcatta gaggtatcgt acatagatga
      601 tcccattatt acgtttacac cagggcaaaa aaatttaaac gcctcagaat agtattctga
      661 cacttccttt attttttccc agtcacgatc taacttatta ttaatataag tgtgccagtc
      721 ggctaaaaag acattacatt caacctgagc gtttaaaaaa tcgttgatct tgtatcccgt
      781 caaaatcaag cttcccaaat gtaatttacc tgagatttct aatccgatat aatgtctggg
      841 tctgtttacg gtctcaaata attttcggag ttcacctagc agcactattt cttctgttgg
      901 ttgtctctta accagatcta acctttgttc tatgtccatg gatcggttta aggatctttg
      961 acaggaacta ttatctttaa cttgtgtata acgagatgtc ggggatgtgc atacgctcgt
     1021 acccaaattt cgagctgaaa gcagaccata atgttctgct agttccgaag tgattgtaaa
     1081 aaaacaaaaa ttagtgaacc gcgatggcca gacccgttca gatagttttt cgaagtatgg
     1141 tgtgatgata tatgatagga gtcctgacgg aagtttgtaa ggttacttga gcaaaatcaa
     1201 tttgacatgc aaagttctta actagagagc ta
//
LOCUS       DATLQL010000090         1032 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_18790, whole genome shotgun sequence.
ACCESSION   DATLQL010000090 DATLQL010000000
VERSION     DATLQL010000090.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1032)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1032)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1032
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18790"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1032)
                     /locus_tag="VNB68_00945"
     CDS             complement(<1..>1032)
                     /locus_tag="VNB68_00945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HVD35947.1"
                     /translation="GEVKSKANPDGKTILFYNHYDVQPEDPIELWNENPFSGKIEGNC
                     IFGRGSADDKGELITRIKAVEYFLKKTDDTPCNVKFIVEGEEEIGSRHISQYLMKYKD
                     KFDCDGIVWEFGYVDEQDRPIISLGMKGLLFIEVLAKGPSSDAHSSLAVLIENPAWRL
                     IRALNTLQDNKGKILVKDWYKEVREFSAEEISLIQEEPLNEESFKNEYSIEKFVNNIA
                     GEDTRQALVGAPTCNIAGILSGYTGKGAKTVLPSEAMAKLDFRLVPDMIPEKQFERIQ
                     KHLTENGFSKKDISVKFIHGEAAARVSPRDPFVSLVQEATEEIFGSKITSVSSAGTGP
                     MHSFIDILK"
BASE COUNT          276 a          236 c          167 g          353 t
ORIGIN      
        1 cttttgagga tatcaataaa tgaatgcata ggccctgttc cagctgatga cacgcttgta
       61 atttttgaac caaaaatttc ttcggtggct tcttgaacta aactcacgaa aggatctctg
      121 ggtgataccc ttgcggctgc ctctccatga ataaatttaa cgctgatgtc tttcttgcta
      181 aatccatttt ccgttagatg tttttggata cgttcaaatt gtttttcagg gatcatatcg
      241 ggaacaagcc tgaaatcaag tttagccata gcttcagatg gaagcactgt tttagctcct
      301 ttgccagtat aacctgacaa aatgcctgct atattgcatg tgggcgcgcc aaccaaagct
      361 tgacgagtgt cctcaccagc aatattattt acaaattttt cgatactgta ctcatttttg
      421 aatgattctt cgtttaaagg ctcttcctga atgagcgaaa tttcttcagc gctaaactct
      481 cgtacttcct tgtaccagtc cttcaccaaa atttttcctt tattatcctg caaagtattt
      541 aatgccctta tgagacgcca agcagggttt tcaatcagta ctgctaagct tgagtgagca
      601 tcgctagaag gaccctttgc tagtacctca ataaacagaa gacctttcat acctagacta
      661 atgattggtc tatcttgttc gtccacatat ccaaattccc aaactattcc atcacaatca
      721 aatttgtcct tatacttcat aaggtattgt gagatgtgcc tacttcctat ctcctcctct
      781 ccttccacta tgaactttac attacatggt gtatcatcag ttttttttag aaaatattct
      841 actgccttta tacgtgtaat caactcacct ttgtcatctg cagagccacg cccaaagatg
      901 caattgcctt caatttttcc actaaacgga ttctcattcc ataactcaat cggatcctca
      961 ggttgtacgt cgtaatggtt atagaataga atagtttttc catctggatt tgcttttgat
     1021 ttaacttctc ca
//
LOCUS       DATLQL010000091         1226 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_18960, whole genome shotgun sequence.
ACCESSION   DATLQL010000091 DATLQL010000000
VERSION     DATLQL010000091.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1226)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1226)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1226
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18960"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..494)
                     /locus_tag="VNB68_00950"
     CDS             complement(<1..494)
                     /locus_tag="VNB68_00950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HVD35948.1"
                     /translation="MTAISKRVDTDVEYLVSNLQELIRIPSVSAKNQFLEECAKLVSK
                     IMNDAGIKAELLYLEEDVKSGKIPPIVFGQVKSRSNPSGKTILFYNHYDVQPPDPLDL
                     WHADPFSGNREGNFIFGRGSSDDKGELITRIKAVEYFLKETGDVPCNIKFLVEGEEEI
                     GSSH"
     gene            699..887
                     /locus_tag="VNB68_00955"
     CDS             699..887
                     /locus_tag="VNB68_00955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35949.1"
                     /translation="MEISLNTCALCGKTIEKPEKSVYREVIDGIRYVFDTKSCLEMFR
                     KFQIVYGDTFVAQHALKT"
     gene            1020..>1226
                     /locus_tag="VNB68_00960"
     CDS             1020..>1226
                     /locus_tag="VNB68_00960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35950.1"
                     /translation="MSESETFFDEAEEIFRQLANSHRLQIMSSLHTRNGKMSTISKEM
                     KARMQDVKRNLDNLLNEGLVERDSH"
BASE COUNT          362 a          248 c          233 g          383 t
ORIGIN      
        1 atatgggaac ttcctatttc ctcttctcct tccaccaaaa atttgatatt acatggtacg
       61 tctcctgtct ctttaagaaa gtactctaca gccttaatcc gtgtgattaa ttcgcctttg
      121 tcgtctgaag aacctctacc aaaaatgaaa ttaccttccc tattcccgct gaaaggatct
      181 gcatgccaca agtcaagagg gtctggtggc tgtacgtcat agtgattgta gaagagaatg
      241 gtttttcctg atggatttga acgtgattta acctgaccaa aaacaattgg aggtatcttc
      301 cctgacttta catcttcttc caggtaaagc agctcggcct tgatccctgc atcattcatg
      361 attttggata ctaatttggc acattcttct agaaactggt tttttgccga aacacttgga
      421 atccttatca attcttgcag attggataca agatattcta catcagtgtc taccctcttg
      481 ctaatcgccg tcaacgaaac ctattcatta tttgtgtgaa aattaagtgt ttcttgatta
      541 agtgactttc gtattgattt ggtaattacc acatgactac atcatcctca agactagcag
      601 gactaataga gttgatattt actttaaata ttaattatat caacttagct ttagcaactc
      661 ctttatgtga tggcctgtct tatttctaga ggttagctat ggaaatatcc ctgaatacat
      721 gcgcattatg tgggaagacc atagaaaaac ctgaaaaatc ggtgtataga gaagtaatcg
      781 acggtatacg atatgttttt gataccaaat cttgtctgga aatgttcaga aagttccaga
      841 ttgtctatgg tgacaccttt gtagcccaac atgcgctcaa gacttgagaa atcggttcta
      901 gatatcttta cttggaatac attggcgcta cagcctagtg gttcaacata acgaccgagt
      961 ccttttgaat tattcttaca agacaatgtt ctaatagcta gtcttgcttg aagcatactg
     1021 tgagcgagtc agagacgttc tttgacgaag ctgaggagat atttcgtcaa ctcgcgaatt
     1081 ctcacagact acaaataatg tcctctctgc atacccggaa cggaaagatg tcaacaatat
     1141 ccaaagagat gaaagccaga atgcaggacg taaagcgaaa cctggataac cttctaaatg
     1201 aaggcttggt ggaaagagac tctcat
//
LOCUS       DATLQL010000092         1510 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1973067, whole genome shotgun sequence.
ACCESSION   DATLQL010000092 DATLQL010000000
VERSION     DATLQL010000092.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1510)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1510)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1510
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1973067"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..850
                     /gene="aspS"
                     /locus_tag="VNB68_00965"
     CDS             <1..850
                     /gene="aspS"
                     /locus_tag="VNB68_00965"
                     /EC_number="6.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004815 - aspartate-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006422 - aspartyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aspartate--tRNA(Asn) ligase"
                     /protein_id="HVD35951.1"
                     /translation="EKGFIEVNTPKIIATSTEGGAALFPIFYYDKEAFLAQSPQLYKE
                     QLTLAFESVYEIGPIFRAEPSRTNRHLSESVSIDVEKAFVDYNDMMALLEDLILSITF
                     KIREKNTPELTYLGCQLPEIELPLPKYSYSHLVERLGAAGQRIKWGDDISPQVMKNLH
                     DDNFTGFYFITDWPTSVKPFYVKPNSEVDSGKVCESFDLMYGPLEISSGSTRINRKSQ
                     LLERMQKQGLNTNMFDYHLKVFDYGVPPHAGYGVGLERLLMAMIKLENIRDAAFYPRD
                     IDRLSP"
     gene            854..1141
                     /gene="gatC"
                     /locus_tag="VNB68_00970"
     CDS             854..1141
                     /gene="gatC"
                     /locus_tag="VNB68_00970"
                     /inference="COORDINATES: protein motif:HMM:TIGR00135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HVD35952.1"
                     /translation="MIDIGMIDTDLIKHLGFLCRLELTDSEISKYISQIEEILAYLDT
                     LDSLTLSHVEPVRSEASLAVSRKDNAKAFEGDVSEVAKNKKDGFIKGPRMA"
     gene            1143..>1510
                     /locus_tag="VNB68_00975"
     CDS             1143..>1510
                     /locus_tag="VNB68_00975"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HVD35953.1"
                     /translation="MSNLLNLTVPQIVTGIKNMDFSAEEYVSQVLAKIRKVDLEINAY
                     ITLNERALEAAASIDKRIRMGENVGSLAGVSVGIKDNICTKGLKTTCASKMLEDYVPP
                     YDATVVERLKNNDAILIGKL"
BASE COUNT          494 a          265 c          324 g          427 t
ORIGIN      
        1 tgagaaagga tttatcgagg tcaatactcc gaaaataatt gcaacttcca ctgaaggagg
       61 ggctgcattg tttcccatat tttattatga taaagaagct tttctagcac aaagtcctca
      121 actgtataaa gagcaattaa ctttggcatt tgaaagtgta tatgaaatag gtccaatctt
      181 tcgggctgaa ccatcacgta ctaacaggca tctttcagaa tcagtttcga tagatgtgga
      241 gaaagccttc gtagactata atgatatgat ggccttactg gaagacttga ttttaagtat
      301 aacttttaaa ataagagaaa aaaatactcc tgagctcacg tatcttggat gtcaattgcc
      361 agagatagaa ttgccccttc ccaaatattc ttattcccat ctagtagaac gactaggggc
      421 agccggccaa cggattaaat ggggcgatga catatcgcct caagtaatga agaatctaca
      481 cgatgataat ttcacaggct tctattttat taccgattgg ccgacttctg taaaaccttt
      541 ttatgtcaag ccaaattctg aggtagactc tgggaaagta tgtgaatctt ttgatttgat
      601 gtatggccct cttgaaatat catcgggcag tacaagaatt aacaggaaga gtcaattgtt
      661 agaaagaatg caaaaacaag gattgaatac aaatatgttt gattaccacc tcaaggtatt
      721 tgattacggc gttccacctc atgccggata tggagttggt cttgaacgtc tcttaatggc
      781 aatgataaag ctggaaaaca tacgtgatgc ggcattttat ccacgcgata tagacaggtt
      841 atcaccataa agggtgatag atattggtat gatcgatacg gatctgataa agcatctggg
      901 ctttctttgc agattggaat taacagactc tgagatttcg aaatatatat ctcagattga
      961 agagatccta gcgtatctgg atacacttga cagcctaacg ctatctcatg ttgaaccggt
     1021 tcgttcggag gctagtttag ctgtctcaag aaaggacaac gctaaagctt tcgagggtga
     1081 tgtatcagaa gttgccaaga acaaaaaaga tggttttata aagggtccaa ggatggcgta
     1141 aattgtcaaa ccttctaaat cttaccgttc cccaaattgt aacgggcatt aaaaacatgg
     1201 acttttctgc tgaggaatac gtttcccaag ttcttgcaaa gattaggaaa gttgacttgg
     1261 aaattaacgc atatatcact ctaaacgaaa gggcactcga ggctgcagcc tcgatagaca
     1321 aaaggattag aatgggagaa aacgttggat cgcttgctgg cgtttcagta gggataaaag
     1381 ataatatctg tacaaaaggc ttgaaaacca cttgtgcgtc aaaaatgctt gaggactatg
     1441 ttcctccata tgacgcaaca gttgtagaga gattgaaaaa taatgatgca atcttaattg
     1501 gaaaattaaa
//
LOCUS       DATLQL010000093         1711 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_553369, whole genome shotgun sequence.
ACCESSION   DATLQL010000093 DATLQL010000000
VERSION     DATLQL010000093.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1711)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1711)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1711
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_553369"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(60..545)
                     /locus_tag="VNB68_00980"
     CDS             complement(60..545)
                     /locus_tag="VNB68_00980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35954.1"
                     /translation="MADKEMIEEKIGEALGLEKAAQKGVEELESRGLLKPEHMKKLGK
                     MKEEASRQEQQMEELVQLLTESDGVDSEKIESTAEETAEKVSKIMETYLGEEPDTQEA
                     LEFLCLAEGGEVTHYEVLSSIAKDVKNKKFGTTVRAILKEEQGHLQLCTKLAKTNAAA
                     E"
     gene            671..1579
                     /locus_tag="VNB68_00985"
     CDS             671..1579
                     /locus_tag="VNB68_00985"
                     /inference="COORDINATES: protein motif:HMM:NF016925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese catalase family protein"
                     /protein_id="HVD35955.1"
                     /translation="MFVSINKLANQLPKDKPDNRAANALQEGLGGQFGEMRTMMQYLF
                     QNFNFRGKAKPYQDLIKSVAGEEIGHVELISTTINMLLEGSTENTPPNELPLAPALDA
                     ANIHHFLVGAQSAMPVDSVGNPWSGSYVYNSGNLVLDLLYNLMLECTGRLQKCRLYAM
                     SDNKAFRATVSYLIVRDLAHEKVFAKALESLGVNWDKTFPVPKTDSSKMPEVQELEKR
                     NLHNQQWTFTNDKSGLGEIFNGESPFGDVEVKTLDGLPEGFDIPQMPEAPQEYSPGLD
                     SELKQKAESKQSDDSTFSKVQRKLRM"
BASE COUNT          512 a          353 c          324 g          522 t
ORIGIN      
        1 actttcgtat tcattgtgag ctgttataat ttttaagata actttaaaaa aaagaaagat
       61 tattcagccg cagcattggt ctttgctagc tttgtgcata attgtaagtg accctgctct
      121 tccttcagta tggctcttac agttgttcca aattttttat tcttcacatc tttcgctatt
      181 gaagatagta cttcgtagtg ggtaacttcg ccgccttcag ctaaacatag gaactctaac
      241 gcctcttgtg tatcaggctc ttctcccaaa tatgtctcca ttatttttga aaccttttca
      301 gcagtctcct ccgctgtact ttcaattttt tctgaatcga ctccatcgga ttctgtaaga
      361 agttggacta gttcttccat ttgctgctcc tgtctactag cttcttcctt cattttacct
      421 aattttttca tgtgttctgg ttttaataaa cctctagatt ctaattcttc aactcctttc
      481 tgtgcagcct tctctaatcc taaagcttcg cctatttttt cttctatcat ttctttatcc
      541 gccatattat tagtattcag tcatcattct taataacagt agcaaacgtt accatagaca
      601 tccatgcgtc gcacagttac tgatttagcc gtcttcagca gttaatatcc tttgtcgcac
      661 tatagaaaac atgttcgtat caataaataa actagcaaac caattgccta aagacaaacc
      721 tgataaccgc gcagcaaatg cactccaaga aggtctggga ggacaatttg gagaaatgcg
      781 tacaatgatg caatatcttt ttcaaaactt taacttcaga ggaaaagcca aaccgtatca
      841 agacctgata aagagcgttg caggtgagga aataggtcat gtagagctga tatctactac
      901 tatcaatatg ttgttagaag gttcaactga gaatactcct ccaaatgagc ttccactagc
      961 ccctgctttg gatgcagcta acattcatca cttcctagta ggcgcacaga gtgcaatgcc
     1021 ggtagactct gtaggaaatc cttggtctgg gtcatacgtg tataacagcg gtaaccttgt
     1081 actagatctt ctttacaacc ttatgttgga atgtaccgga aggcttcaaa agtgtcggct
     1141 atatgcgatg agcgataaca aggcattccg tgccacagtt tcttacctga tcgtaagaga
     1201 tttagcacat gaaaaagttt ttgccaaggc gttggaatct ctaggagtaa attgggataa
     1261 gacatttcca gttcccaaga ccgacagttc aaaaatgcca gaagtacaag agttggaaaa
     1321 gaggaacctt cacaatcagc aatggacatt tactaacgat aaatcaggac ttggagagat
     1381 atttaatggc gaatctccgt ttggagacgt agaggtgaaa acattagatg gtcttccaga
     1441 aggatttgac attccacaaa tgccagaagc tccacaagaa tattcccctg ggttggatag
     1501 tgaattaaaa cagaaagcag agtctaaaca gtcagatgat agcacttttt ctaaggtcca
     1561 gcgaaaacta aggatgtaaa cttacagttc tctatacgct acacaggtta aagtactatg
     1621 ttggatactc aaaggtatgg cagatgaaat agaaggtaca ttcgataagc taaaggccgg
     1681 tgctaaagca gttgcaaaga aggttacaga t
//
LOCUS       DATLQL010000094         2141 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_19343, whole genome shotgun sequence.
ACCESSION   DATLQL010000094 DATLQL010000000
VERSION     DATLQL010000094.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2141)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2141)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2141
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19343"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..327)
                     /locus_tag="VNB68_00990"
     CDS             complement(<1..327)
                     /locus_tag="VNB68_00990"
                     /inference="COORDINATES: protein motif:HMM:NF012492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HVD35956.1"
                     /translation="MRDQVLIQGNTKTLQEDPLMQKSDDAQSQLIIDKYKKEGFDSLT
                     AIQQKALPVILRKIHSLIVAQTGSGKTEAAIIPIFARLSRDLPKNSGKIKVLYLTPLR
                     ALNNDVF"
     gene            735..1796
                     /locus_tag="VNB68_00995"
     CDS             735..1796
                     /locus_tag="VNB68_00995"
                     /inference="COORDINATES: protein motif:HMM:NF014610.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35957.1"
                     /translation="MENDNNLEPRHDQEAATGERKVKGIALLSGGLDSSLAVRAMLDQ
                     GILVEAVAVKTPFCDFDCGKGCGQKVKEVATELGIPLKTVYFGDDYLRMLKHPKYGYG
                     SGMNPCIDCRSMMYKAAKNEMEKTGAEFLITGEVLMQRPMSQNPRALNIIEEESKMKG
                     KVLRPLSAKFLPPTEAENMGLVDRAKLHSITGRSRKSQLNLAKQYDIVDPPNAAGGCL
                     LTDPAFARRIKDAMHSTDDVPTINDVELLKLGRHFRLSSKSKLIVGRNNEENEIMDAL
                     KITGDIILEAKEYPGPIGILRGLTHDQDMLEISAAIVLRYSDAPKQGESKVKVLIDDH
                     EIEITTVPVDDKLLEKTRL"
     gene            1891..>2141
                     /locus_tag="VNB68_01000"
     CDS             1891..>2141
                     /locus_tag="VNB68_01000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein SepF"
                     /protein_id="HVD35958.1"
                     /translation="MQIPKTPVYLKTITLRDISEIPSIKEDSKKNMILILRVTPLAQK
                     DVDELRKAIDELYKYVQAFGGDIARLGEERVVIIPPGVK"
BASE COUNT          687 a          381 c          463 g          610 t
ORIGIN      
        1 gaagacatcg ttgtttaaag ctcttagagg agtaagatag agaactttga tttttccgct
       61 attttttgga agatctcgag acagcctagc aaagattggt attatagccg cttctgtttt
      121 ccctgaacca gtctgtgcta ctattagtga gtgtattttc ctcaaaataa caggtaatgc
      181 tttttgttga attgctgtta aggaatcaaa tccttctttc ttatacttgt caataattaa
      241 ctggctctgc gcgtcatcac ttttttgcat caggggatct tcttgaaggg ttttggtatt
      301 gccttgaatt agaacttgat ctctcataaa caattgttgc aaaaagacca aggacaaata
      361 aaccaacagc tacccatacg tatttgtcaa aacttgcaat accttctatt gccatatcat
      421 tccctttaaa catcgataaa tatattcgtt ttaattctaa cgttgcttgg caccgtaata
      481 gcaagtggag tttttacgtg acatttatag caaactagta taaagggcca acgagaggca
      541 aataatcata tattttttta gaaaatcgct aacaatatta tcagtttttc ccgtcaaaag
      601 ttaggagtgt agtcgggaag aatgagtact tgtttctact tgtgacatct cgatttcttt
      661 agagatgcaa tgtgagaatt gaattattaa aattaaacat acatatatta tgttgacggt
      721 aatggcgagt gactttggaa aatgataaca atttagagcc aagacacgat caagaagcag
      781 ctacaggcga aagaaaggta aagggcatag cacttctgtc aggtggccta gacagtagtt
      841 tagcagttcg tgcgatgtta gaccagggca tcctggtcga agctgttgca gtcaagacac
      901 cgttttgtga tttcgattgc ggtaagggtt gtggccaaaa ggtcaaagag gttgctacag
      961 aactcggcat tcctcttaag accgtgtatt ttggcgatga ctatctacga atgttaaagc
     1021 atccaaaata tggctacggt tctggcatga atccttgtat cgactgcaga agcatgatgt
     1081 acaaggctgc gaaaaatgag atggagaaaa caggggctga gttcctaatc acaggtgaag
     1141 tattgatgca aagacctatg agtcagaatc ctcgtgctct aaatatcatt gaagaagaat
     1201 caaaaatgaa aggaaaggta ttgagacctc tctctgcaaa gtttcttcca cccactgagg
     1261 cagagaatat gggattagtg gatcgagcaa agctacattc tattactggg agatcacgga
     1321 agagtcaact taatctagcc aagcagtatg acattgttga tcctcccaat gcagcagggg
     1381 gatgtctttt aaccgatccg gcattcgctc gtagaataaa agacgccatg cattctacag
     1441 atgacgttcc gactattaat gacgtagagc tattgaagct cggtaggcat ttcagattat
     1501 ctagtaagtc gaaattgatc gtagggagaa ataatgagga gaatgagatt atggatgcac
     1561 taaaaataac aggagacata attcttgaag ctaaagaata tcctggaccg attggtattc
     1621 ttaggggctt aacccatgat caagacatgc ttgaaatatc agctgctata gttttgcgct
     1681 actctgatgc tccaaagcaa ggagagtcaa aagtaaaagt cctcatagat gaccatgaaa
     1741 tcgaaattac taccgtgcct gtagatgaca agttactcga aaaaacacga ctctaaaatt
     1801 caccctgtcg gtaaatgact tttgaccaga atgactattt attgattcag taagagctct
     1861 actgtactta gcattagaga agatggattt atgcagatcc caaagacacc ggtctatctg
     1921 aaaacaataa ccctcagaga cattagcgag atcccaagta tcaaggaaga ttcaaaaaaa
     1981 aacatgattc ttattttgag ggttactcct ttggcacaga aagatgtaga tgagcttcgt
     2041 aaagcaattg acgagctata caagtatgta caagcatttg gtggcgatat tgcaaggttg
     2101 ggggaagagc gtgtagtaat aattcccccc ggtgtcaaaa t
//
LOCUS       DATLQL010000095         1199 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1973271, whole genome shotgun sequence.
ACCESSION   DATLQL010000095 DATLQL010000000
VERSION     DATLQL010000095.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1199)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1199)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1199
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1973271"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..186)
                     /locus_tag="VNB68_01005"
     CDS             complement(<1..186)
                     /locus_tag="VNB68_01005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35959.1"
                     /translation="MLNEENNQSQKKLRGSGGYVFAKVTDEEQKNGNLGGPELFLAGI
                     GRLSEDRFSKYYCNKCES"
     gene            529..>1199
                     /locus_tag="VNB68_01010"
     CDS             529..>1199
                     /locus_tag="VNB68_01010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HVD35960.1"
                     /translation="MKTKFGELGLNNEIIRALEENGYTTPFPIQEKAIPFVLKGRDVI
                     GQAHTGTGKTAAFSLPMLTRLKPSGPIQALILVPTRELANQVTTEIKKFAKYIGIRAV
                     SIYGGQSINLQYEQLRRKPQVVVATPGRLIDHLKRGSIQLDDVRFVVLDEADRMLDMG
                     FIDDIKFILFYVNEERQTCLFSATMPREILRLAQEHMKDSHEIRLNEEELSLDTIDQS
                     YLVIH"
BASE COUNT          371 a          251 c          231 g          346 t
ORIGIN      
        1 actttcgcac ttattacaat aatacttcga aaaccgatcc tcgcttagcc tgccgattcc
       61 agccaggaaa agttcagggc cccctaggtt tccattcttt tgttcctcgt ccgttacctt
      121 tgcaaaaaca tacccgccag agccacgtag tttcttctga ctttgattat tctcttcgtt
      181 tagcataaag gctacaagac attgtcctgc ttaacttaaa tattctactg tttagatggc
      241 taaatttttg cttaattcat tgctacttaa agaatattct tgagctatca cctgacatat
      301 ttttactatt cctagtatga ttaatacccc gattcaacca cccaaacagt gaaacactga
      361 aacgctaaca cttgtcgtag ccttatgatt attccatttc cgtatgcctt atatctgagt
      421 aatttgtaat ctcagaagac aagagtagta cggcggatat gtcaagcacc taaaaactgt
      481 ttctcacttc ttccgttact tttgtaaata ttagagtgag aagtgaaatt gaaaacaaaa
      541 ttcggagaat taggacttaa taatgaaata attcgagcat tagaagaaaa tggatatacg
      601 acgcctttcc caattcagga gaaagctata ccttttgtct taaaaggtag agatgtcata
      661 ggccaggcac ataccggaac cggcaagacg gcggcttttt ctctccctat gctaactagg
      721 ttaaaaccga gtggcccaat tcaggcgttg atactcgtgc ctacacgcga gttagcaaat
      781 caggtaacaa cagagatcaa aaagtttgcg aaatacatcg gtattagagc agtctccatc
      841 tacggcggcc agagcattaa tctacagtac gaacaactaa gaaggaaacc ccaagtagta
      901 gtcgcgaccc caggtcgatt aattgatcac cttaagcggg gttcgattca gcttgatgac
      961 gttaggttcg tagtccttga tgaagctgac agaatgttgg atatgggttt tatcgatgat
     1021 ataaagttca ttctatttta cgtaaatgaa gaaaggcaga cgtgtctatt ctctgcaacg
     1081 atgccgcggg aaattttgag attagcacaa gaacatatga aagattccca cgaaatcaga
     1141 ctgaacgagg aggagttgag ccttgataca atagatcaat cctatttagt catacatga
//
LOCUS       DATLQL010000096         1206 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_197450, whole genome shotgun sequence.
ACCESSION   DATLQL010000096 DATLQL010000000
VERSION     DATLQL010000096.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1206)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1206)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1206
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_197450"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..549
                     /locus_tag="VNB68_01015"
     CDS             <1..549
                     /locus_tag="VNB68_01015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35961.1"
                     /translation="FDILKQDPTQHQTKVFIQIEKINDGIATTVFKGHEYAKEFLRSL
                     VRRGSSMITFVNNYTTIDGYTFRVVVIAFSHRRLNSSKKHEMRMISHKVLDEKVRNLT
                     IDQFVQEVTMGKMGADLLAEGKKIASLRHIGIKKTKLISTPESRAVGEAKKIEIPSSQ
                     EGEIEEREENQEEREQSPEATS"
     gene            604..1056
                     /locus_tag="VNB68_01020"
     CDS             604..1056
                     /locus_tag="VNB68_01020"
                     /inference="COORDINATES: protein motif:HMM:NF013994.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding domain-containing protein"
                     /protein_id="HVD35962.1"
                     /translation="MKDQVGLFSGAEIKVVLHATESEDKILRSINEVLSVPPDRFTIE
                     CFEGHWGNKLCLMTATLSSPDANTLAIKVVSLLTVIDISELANSFPKYMDEKGSLYIR
                     LDKQRICRGKLSLSASDSIRIRFKPVRRYKPVDSIIQSYKRRLLSLKE"
BASE COUNT          418 a          214 c          249 g          325 t
ORIGIN      
        1 tttgatattt tgaaacagga tccgactcaa catcagacta aagtctttat tcaaattgag
       61 aaaattaacg atggcattgc aacaactgtt ttcaagggac atgaatatgc aaaagaattc
      121 cttcgcagcc tggtaagaag aggaagctcc atgatcactt ttgtgaacaa ttacactacg
      181 atcgacggtt acacctttcg agttgtagta atcgcgttta gtcacagaag actcaattct
      241 tccaagaaac acgagatgag gatgatatct cataaggttt tagatgaaaa ggtgcggaat
      301 ttaacaatag accaattcgt tcaggaggtg accatgggca agatgggcgc cgatctatta
      361 gcagaaggaa agaagattgc ttctcttaga catattggca ttaaaaaaac taaattgatt
      421 tcaactcctg agtctagagc tgttggagaa gcaaagaaga ttgagatacc ctcatcacaa
      481 gaaggagaaa ttgaagaaag agaagaaaat caagaagaac gagagcaatc tccagaagca
      541 acttcataga attaatattt ttccattcca aattatcatc acttgtcaat gttcaaaaat
      601 gacttgaagg atcaagtcgg gttattctca ggagcggaaa tcaaagtcgt tctgcatgca
      661 acagagagtg aagataaaat attgaggtca ataaacgaag tcctgtcagt tccacctgat
      721 cgttttacga ttgaatgctt tgaaggccat tggggcaata agctctgcct aatgacagcg
      781 actctgagca gccccgatgc taacaccttg gctatcaaag tggtatcgtt gttaactgtt
      841 attgatataa gtgaacttgc aaattctttt cccaaatata tggatgaaaa gggctctctc
      901 tatattagat tagataaaca aagaatatgc agaggaaagc tttcgctttc tgctagtgac
      961 tcaattagaa ttcgatttaa gccagtcagg agatacaaac ccgttgactc tattatacaa
     1021 agctacaaga ggaggctttt gtctttaaaa gaatagacct gtgtgtacgt tctaatgaaa
     1081 tagaggaaaa accttcgtta agaaatatat tcggattgga tatccttggg tatgagttca
     1141 acggcatagt ccaagaccac gttgtttatc gactaaataa gaaaccaagc gcgctaacta
     1201 actacc
//
LOCUS       DATLQL010000097         1107 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_907338, whole genome shotgun sequence.
ACCESSION   DATLQL010000097 DATLQL010000000
VERSION     DATLQL010000097.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1107)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1107)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1107
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_907338"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
BASE COUNT          333 a          225 c          207 g          342 t
ORIGIN      
        1 ttctccactt tttctatttc ttgctgattg taaaactcaa agacctggcg aacgacttgt
       61 ttattttgtt cttcttgtgt tgatgacatt acggagaatg ggctgtgtgc aacttaatta
      121 tttttaagtt ttacaataga agattatcag cgagtttcaa atcatattat atccactact
      181 tgccttcaat actagagccc tgctgctaat tttgccctat cgtataagac taattttata
      241 gttcacgttt ctgggacaat agttcgtaaa aagggtctga ccttttccac cttttatatg
      301 cccataagcc aatgccgaaa agacctacta agacagatcc tcctataact attttagctg
      361 cattgctcat atcaagaatg agataataac gtaatactta aggctttagc aggtaaattc
      421 atcaaattta ggtgcactag tcgtcgaacg ttagtattaa tggaatagaa taatacaatt
      481 agagttcttt tggaggcaga ctggtgcgta tactaccacc tttaatcaag acattgatcg
      541 gggcaaccac gttctgatag gtttgacagg gcactaactt taaatgtttt agtgctcgat
      601 gtcgtggcta ggaagaggat gcgaggctgc atatcagccc attcacagga gaaatactgc
      661 tcatcctcct cgttactctt accattattt ttctattacc actagtggca taatcataat
      721 caattctgtt atcaaaaaca agctcaaaat aataccgtag ttgtacgaca ggaaaagatg
      781 gaccaggtgg gatttgaacc cacgacctca gtcagtaagg gttctatttc gtcatcctat
      841 cggttttgta tgaataagaa cttgttcgaa ccccacctgg tccattatac aggtgttact
      901 ctcggttttg aggaaacgtg acacccctga agacaacaga accaggagtt acaacttgca
      961 atggtcaaag cacacgtcta gcattccctt actttatcag cccaactaac tttttagggt
     1021 aaaaaaatgc taaaaggact tgtatttaat ccaattacag gacaaaagaa gaccatatgc
     1081 cgacggttag ttccgatgct gcagtga
//
LOCUS       DATLQL010000098         1157 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1084298, whole genome shotgun sequence.
ACCESSION   DATLQL010000098 DATLQL010000000
VERSION     DATLQL010000098.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1157)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1157)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1157
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1084298"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..141)
                     /locus_tag="VNB68_01025"
     CDS             complement(<1..141)
                     /locus_tag="VNB68_01025"
                     /inference="COORDINATES: protein motif:HMM:NF013738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly scaffold protein"
                     /protein_id="HVD35963.1"
                     /translation="MSEDIYREIILDHYRNPRNKGKLADADVSIHDSNPLCGDEIDIH
                     LRV"
     gene            complement(138..>1157)
                     /locus_tag="VNB68_01030"
     CDS             complement(138..>1157)
                     /locus_tag="VNB68_01030"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0031071 - cysteine desulfurase activity
                     [Evidence IEA];
                     GO_process: GO:0006534 - cysteine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HVD35964.1"
                     /translation="TREKIAKFINARFIEEIIFTRNATEAINLISYTWGSLNINQDDI
                     VVITEFEHHSNIVPWQILTHRKGAHLKYIGVDDDGYLRLKDYQKYLESGRVKLVSISE
                     MSNVLGTIVQLKEIIKIAHEKGIPVLVDGAQSVPHMPVDVQSTDCDFMAFSAHKMLGP
                     TGVGILYVKKEILEKMPPFIGGGDMIKEVHKQKTMYNDIPYKFEAGTPNIADVIGFAS
                     AIDYLKAIGMDNVRQHELEITQYALNALRGVEGLTIYGPLDPHHRGGVLSFNVGDIHP
                     HDLATIMNEHGVAIRSGHHCAQVLMERLDVSATSRASFYIYNTKEEVDILINVLHQAR
                     RIFRI"
BASE COUNT          310 a          257 c          200 g          390 t
ORIGIN      
        1 tacccttaga tgaatatcaa tctcatcgcc acaaagtgga ttactgtcat gaatacttac
       61 atccgcatca gccagtttgc ccttatttcg tgggttccta tagtggtcca agattatctc
      121 cctatatata tcctcgctca aattctaaat atcctcctcg cttgatgaag tacattaatt
      181 agtatatcaa cctcttcttt cgtattatag atataaaaac ttgcgcgcga ggttgcagat
      241 acatccaatc tttccatcaa cacttgtgcg cagtggtgtc cggatctaat ggctactcca
      301 tgctcattca ttattgtagc aagatcatgt ggatggatat ctcctacgtt gaatgataat
      361 accccgcctc gatgatgtgg atcgagcgga ccgtatatag ttaagccttc cacgcctctc
      421 agggcgttaa gggcgtattg tgtgatctcg agttcgtgct gtcgtacatt gtccatacct
      481 atagccttaa gataatcaat agcagacgca aatcctatca catctgctat gtttggagtt
      541 ccagcctcaa acttgtatgg tatatcattg tacattgttt tctgtttatg aacttccttt
      601 atcatgtctc cacctcctat aaacggaggc attttttcaa gtatctcttt ttttacatat
      661 aggataccaa caccggtcgg tccgagcatt ttgtgagcag aaaacgccat gaaatcacag
      721 tctgtactct gaacatctac tggcatatga ggaacagatt gcgctccatc gaccaaaaca
      781 ggaatgcctt tttcatgagc tatcttgata atctctttca gctgaacgat cgtgcctagc
      841 acattggaca tttcgcttat tgaaactaat ttcactctac cactttctaa atatttttgg
      901 taatctttca gtcgtaagta cccatcatca tcgacaccga tgtatttcaa atgagcacct
      961 tttcgatgtg tgaggatttg ccacggcact atgttactgt gatgctcgaa ttctgttatt
     1021 accactatgt catcttgatt aatatttaaa ctgccccatg tataagatat taaattaatt
     1081 gcttcagtag catttcgagt aaaaattatt tcttcgataa aacgtgcatt aatgaatttg
     1141 gcgatttttt ctctagt
//
LOCUS       DATLQL010000099         1014 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1262146, whole genome shotgun sequence.
ACCESSION   DATLQL010000099 DATLQL010000000
VERSION     DATLQL010000099.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1014)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1014)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1014
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1262146"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..183
                     /locus_tag="VNB68_01035"
     CDS             <1..183
                     /locus_tag="VNB68_01035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35965.1"
                     /translation="AEFQRRGKKPILVGAMGGPFTTSISDRIEQSKVPVYHSVITWIT
                     GAGTLAKWARIKEKTK"
     gene            284..676
                     /gene="erpA"
                     /locus_tag="VNB68_01040"
     CDS             284..676
                     /gene="erpA"
                     /locus_tag="VNB68_01040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster insertion protein ErpA"
                     /protein_id="HVD35966.1"
                     /translation="MDKDSYILSTRLILMETTQEGELITISSKAAEKVTEFMKQENKD
                     NLYLRVYVSGGGCSGLSYGMGFEEKVDEDDAVINKNGVQVIVDSYSQKYLKGANIDYI
                     ESLMGSGFKINNPNVTKSCSCGHSFSTE"
     gene            complement(750..>1014)
                     /locus_tag="VNB68_01045"
     CDS             complement(750..>1014)
                     /locus_tag="VNB68_01045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glutamate dehydrogenase"
                     /protein_id="HVD35967.1"
                     /translation="QNQILVIPDILANGGGVTVSYFEWLQNLRREYWAEQEVNNRLDT
                     NITKAFADVYDIHDKNKVDMRKASMILAVNRVVEAIKIRGLWP"
BASE COUNT          310 a          193 c          222 g          289 t
ORIGIN      
        1 gcagaatttc agagacgagg gaagaaaccc atattggtgg gtgccatggg tggtccattc
       61 accacatcaa tatctgatag gatagaacag tcaaaagtcc cagtttacca ctcagtgatc
      121 acatggatta caggggctgg aacgttagcc aagtgggcta gaataaagga aaagacaaaa
      181 taggtatgtt gacaagatta tctcgccgaa caggtatgga ataaatatta catttccata
      241 catctaggtt atctgtgaga acggaagggg tccggtctca aaattggaca aagattctta
      301 tattttatca acgcgattaa tcctaatgga aactacacag gaaggcgagc tgattacgat
      361 aagttccaag gcagcggaaa aggttacgga atttatgaag caagaaaaca aagacaattt
      421 gtacctgcgt gtatatgtat ctggaggagg ctgttctgga ctatcatacg ggatgggatt
      481 tgaagagaag gtagatgaag atgatgctgt aattaataag aatggggttc aagtaatcgt
      541 cgacagttat agccagaaat atcttaaggg cgctaatatt gactacattg aaagccttat
      601 gggctcggga tttaagatca ataacccgaa cgtcacgaag agctgttcat gtggccattc
      661 attttcaacc gagtaattcg gtaccgccag accctcaaat taaaaaagtg tagtaaatga
      721 gtatatttcg tttttagttc tttttctatt taaggccaga gccctcttat ttttattgcc
      781 tcgacaactc ggtttactgc aagtatcata cttgcctttc gcatatccac cttatttttg
      841 tcgtggatat cgtaaacatc tgcaaaagcc tttgtgatgt ttgtgtccag acgattgttc
      901 acctcttgtt cagcccagta ttctctcctc aaattctgga gccattcaaa atatgatact
      961 gtcaccccgc ccccgtttgc caatatatcc ggaatcacaa gtatttggtt ctga
//
LOCUS       DATLQL010000100         1726 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_19663, whole genome shotgun sequence.
ACCESSION   DATLQL010000100 DATLQL010000000
VERSION     DATLQL010000100.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1726)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1726)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1726
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19663"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..939
                     /locus_tag="VNB68_01050"
     CDS             <1..939
                     /locus_tag="VNB68_01050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35968.1"
                     /translation="MRVPLKGSDKFCLELNSAYSKTEQVYFSSIKSSLKTSAIKVMLG
                     DGTITDSVTFDPQETVRYFNILGGRLKGWSNSGVSKSNTEDLHRVSYQIYKQVEKYYI
                     SVHFEIQFHSLKFYRVDKRVLEIQKEIHELSRKSNEIHQSIAKTGNEIVVRELGNMGY
                     GDLPFEDLLEKMLSDQIISSQLEDKAKEVRSKYPELREVEIKERALAAEINDYIMEVY
                     TIDPVVIDYNKLMQGEVGVALYMDIEVVNNMKSKVRQAYVNFENIKAESGKSIINSLE
                     KLTGIISDMEKWRREELSLNTASQNKSPESEFKDRS"
     gene            1046..>1726
                     /locus_tag="VNB68_01055"
     CDS             1046..>1726
                     /locus_tag="VNB68_01055"
                     /inference="COORDINATES: protein motif:HMM:NF012512.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine dehydratase"
                     /protein_id="HVD35969.1"
                     /translation="MDDEVRKTPLTESHTFSKMIGSHIFLKMESMQKTGSFKVRGACS
                     KVNSLTAEEWKRGVITASAGNHAQGVAFSAMKKKIPCKIIMPKSASPAKVAATRSYGA
                     EVILSGNTYEETWKVADSISHESGYVMIHAFDDPLVICGQGTIGLELLEDLQRFDKVY
                     VPIGGGGLASGLAIAVKAKRPEVKIIGVESNQFPAMKDSISSGHLVTTKSGFSIADGI
                     SVKSPGELT"
BASE COUNT          596 a          295 c          385 g          450 t
ORIGIN      
        1 atgagagtac ccttaaaagg cagcgacaaa ttctgcttgg aattaaattc agcttattct
       61 aagacggaac aagtttattt tagtagcatt aaatcttcgc taaagacttc agctataaag
      121 gtaatgctgg gagatgggac aataacagat tcggtaactt ttgatcctca agagacagtt
      181 cgatatttta acattctggg aggtcgtcta aaaggatggt ctaactctgg agtctccaag
      241 tccaacactg aagatctaca cagagtttca tatcaaatat acaagcaggt agaaaaatac
      301 tatatttcag tacattttga gattcaattt cattcattaa agttttatag agtagataaa
      361 agggtcctag aaattcaaaa ggaaattcac gagttatcaa gaaaaagtaa tgaaatccat
      421 caatcgatag ccaaaactgg taacgaaatt gttgtgcgag aattaggtaa catgggatac
      481 ggagatcttc catttgaaga tctactggaa aaaatgcttt cggatcaaat tatttcttct
      541 caactggaag ataaagcaaa agaagtcagg agtaagtacc ccgaactaag ggaagtagaa
      601 attaaagaga gagcgttggc tgctgagata aatgattaca tcatggaagt gtacacaatc
      661 gatccggtcg taatcgacta taataaattg atgcagggag aggtaggagt cgctctgtat
      721 atggacatcg aggtagtaaa taatatgaag tcaaaagtaa gacaagctta tgtgaatttt
      781 gaaaacatca aagcggaatc cggcaagagc ataattaatt ctctagaaaa attaacgggc
      841 ataattagtg acatggaaaa atggcggcgt gaagagctat ctttaaacac tgcttctcag
      901 aataaatctc ctgaatcaga atttaaggat aggtcataat agtgttcatc atagggtcga
      961 tcattagtaa ttgaataaca ggaacagaat atatcaggag tctgaaatac cttcattaaa
     1021 aaatatctta gatgctcgca gtttaatgga cgatgaggtc agaaaaacac cgttaacaga
     1081 gtcacacaca ttttcaaaga tgataggctc acatatcttt ctgaaaatgg agtcgatgca
     1141 aaagaccggt tcttttaagg tcaggggcgc ctgttcaaag gtaaacagct tgactgccga
     1201 agagtggaaa agaggggtta taacagcttc ggccggcaat cacgcacagg gagttgcctt
     1261 ttctgcaatg aaaaaaaaga ttccatgtaa gattattatg ccaaaaagtg cctcccctgc
     1321 gaaggtagca gctactaggt catacggggc agaagtaatc ctctccggta acacgtacga
     1381 ggagacctgg aaggtcgccg attcaatttc ccacgagagt ggctatgtta tgattcatgc
     1441 atttgacgat cctctcgtca tatgtggcca gggaaccata ggattggaac tcttggaaga
     1501 cttgcaacgt ttcgacaagg tatatgttcc gataggaggg ggtggtcttg cgtcaggact
     1561 agcaattgca gtaaaggcca aaagacctga agtgaaaata ataggcgtag aatctaatca
     1621 atttcctgct atgaaagatt ccatatcatc tggacacctg gtaactacaa aaagtggctt
     1681 ttccattgcg gatggaattt ctgttaaatc gcccggtgaa ctcaca
//
LOCUS       DATLQL010000101         1526 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1618531, whole genome shotgun sequence.
ACCESSION   DATLQL010000101 DATLQL010000000
VERSION     DATLQL010000101.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1526)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1526)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1526
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1618531"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..602
                     /locus_tag="VNB68_01060"
     CDS             <1..602
                     /locus_tag="VNB68_01060"
                     /inference="COORDINATES: protein motif:HMM:NF013175.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35970.1"
                     /translation="KEHGVNQLRVIGGVCDCCLKVGMQFYDARNKDTTNTTIGITNAI
                     TSNSIDSNNNNYDDNYGNKNKNNQKSLGIPMHPVTEIEIAEITKVVENAHRYLQIAFA
                     EDLYLYCQANNINFPELRDALNTKWNVNILEPREGIGGHCLPKDTKMFLQSSNERKSK
                     ILTAAMEVDEDYRRFRTKLEKQINSPIVDDNTTRKRYLR"
     gene            618..>1526
                     /locus_tag="VNB68_01065"
     CDS             618..>1526
                     /locus_tag="VNB68_01065"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HVD35971.1"
                     /translation="MDHLKKDSPTNNGEANKKRHKEQPKSSSESVLPETSEKIRTSAW
                     ITLAILGCTLLVTFYGETMLLPAIRDIIGDFHISYSTSSWILTAYLISGAVMTPIAGK
                     LSDIYGRKKMVLIIFIIYIIGICAGGLSSNITFLVIARVIQGIGISMFPIAFGIIRDQ
                     LPRDKLAVGVGIFSSMFAAGSVVGLAVGGSIINNFGWHATFLSIVPVAIILWLVINRF
                     IRDNKAESETPISLGQPPSTKYSRKQPKAAVKSASSIDLKGAIALAATIASFLLALTY
                     IGNSNNLNSSSTQITVVSLCLLSMGSL"
BASE COUNT          516 a          281 c          294 g          435 t
ORIGIN      
        1 agaaggaaca tggcgtaaat caattgcgtg taataggagg ggtatgtgac tgttgtctca
       61 aggtaggaat gcaattttat gatgctagaa ataaagatac tactaatacc actattggca
      121 tcaccaatgc cattacttct aatagcattg atagtaacaa taataattac gatgacaact
      181 acggtaataa gaacaagaac aaccagaaga gcttgggtat tcctatgcat ccagtaaccg
      241 aaattgaaat tgctgaaata accaaggtcg ttgaaaatgc acacagatat ctacaaatag
      301 catttgctga agatctttat ctttattgtc aagcaaataa cataaacttt ccagaattac
      361 gagatgctct aaataccaaa tggaatgtca acattttgga accaagagaa ggaataggag
      421 ggcactgtct gcccaaagac actaagatgt ttctacaatc atcaaatgaa aggaaaagca
      481 agatactaac agcagctatg gaggtagatg aggattatcg tagatttaga accaaactag
      541 agaaacagat caattctcca attgtcgatg ataatactac aagaaaaagg tatctacgtt
      601 aaagctaagt gattacgatg gatcatttaa agaaagactc gcccacgaac aatggcgaag
      661 ccaataaaaa aaggcataaa gaacaaccaa aatcatcatc agaatctgtg ttgccagaaa
      721 cttctgaaaa aattagaact tctgcatgga taacacttgc gatcctagga tgtacccttc
      781 tagttacatt ctacggagag actatgttac taccagctat tcgtgacatt attggagatt
      841 ttcatatttc gtacagtact tcttcttgga tacttaccgc atatcttatc tcaggtgccg
      901 ttatgactcc cattgctgga aagttatctg atatctatgg acgaaagaaa atggttttaa
      961 taatattcat aatttatatc ataggaattt gtgctggtgg actctccagc aatataactt
     1021 ttcttgttat tgcaagagtt attcaaggaa tcggtatatc catgtttcca atagcttttg
     1081 gaattataag agaccaactc cctagggaca agctcgctgt aggtgttggg atattcagct
     1141 caatgtttgc tgcaggatcg gtagttggtt tggcagtagg tggaagcata atcaataact
     1201 ttggatggca tgctacgttt ctttcaatag tgccggttgc cattatcctc tggcttgtaa
     1261 tcaatagatt tatccgagat aataaagctg aatcagaaac ccccattagt ttaggacaac
     1321 ctccgagtac taagtattct cggaagcaac ccaaagctgc tgtgaaaagt gcaagcagta
     1381 ttgatctaaa aggcgccata gccttggctg ctacgatcgc ctctttttta cttgccctta
     1441 catacatagg gaatagcaat aacctaaact cgtcttccac acaaattaca gtagtttcct
     1501 tatgcttgtt atcaatggga tcatta
//
LOCUS       DATLQL010000102         1001 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2329068, whole genome shotgun sequence.
ACCESSION   DATLQL010000102 DATLQL010000000
VERSION     DATLQL010000102.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1001)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1001)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1001
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2329068"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..404
                     /locus_tag="VNB68_01070"
     CDS             <1..404
                     /locus_tag="VNB68_01070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35972.1"
                     /translation="RYAEFTRYLSKIDMVVVNREFLRSLIDLMDEDSLYQLGTKLGST
                     IPIDTIMFWKKELTEQSVFQYIEKIICRYGQLGTYDEVSQGNNRTIVMRHRLGRKGSK
                     FFESYLQSTLKNTIRREAKFEITDSSVKVEI"
     gene            505..>1001
                     /locus_tag="VNB68_01075"
     CDS             505..>1001
                     /locus_tag="VNB68_01075"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase"
                     /protein_id="HVD35973.1"
                     /translation="MFAIVHMSDVVRIPPSRLTNSLHDTAIAILKEKYESMISPDLGY
                     VVMITEASANSIGKLVAGDGATYHKVIFQALTFYPKLQEIVEGEVVEITDFGAFVRIG
                     PTDALLHLSQITDDYLKSDVKQGVILANQTSRSLKIGSKIRARVTAVSLGKGAGMGKI
                     GITCR"
BASE COUNT          328 a          177 c          208 g          288 t
ORIGIN      
        1 agagatatgc cgagtttact agatatcttt ctaaaattga tatggtagtg gtaaatagag
       61 aattcctaag gtccctcatc gacttaatgg atgaagatag cttatatcaa ctaggcacga
      121 aactaggctc aaccatacct attgatacga ttatgttttg gaaaaaagag cttaccgagc
      181 aatctgtttt tcaatatatt gaaaaaataa tctgcagata cgggcagcta ggaacctatg
      241 atgaagtttc tcaaggaaac aatagaacta tcgtgatgag gcatagatta ggaagaaagg
      301 gctccaagtt tttcgaatct tatcttcaat cgactttaaa gaatactatt cgaagagaag
      361 ctaaattcga aataaccgac tcctctgtta aagttgaaat ttgaaaagac agtcaatatt
      421 tacgggaatt atttcttttc atttgatttt ttactttatc caaagattca taaattgatg
      481 tctgctttca agaaatcatc aagcatgttc gcgatagtgc acatgagcga cgttgtcaga
      541 atacctccta gtcgtctaac gaattcactt catgatactg ctattgctat tcttaaggaa
      601 aaatacgaga gcatgatcag cccagacctt gggtacgttg taatgattac cgaagcatca
      661 gcaaattcta taggtaaatt agtagcaggc gatggcgcta cctaccacaa agtaattttc
      721 caggccttaa ctttttaccc aaagctccag gaaattgttg aaggcgaagt agtggagata
      781 accgactttg gagcctttgt gagaatagga cctacagatg ctctcttaca tctgtcacaa
      841 attaccgacg attatttaaa gagcgatgtc aagcaagggg taatattggc caatcagacg
      901 tccagatcct tgaagatcgg atcaaagata cgtgcacggg tgactgcggt cagtcttggt
      961 aaaggagctg gtatgggtaa aataggtatt acttgtaggc a
//
LOCUS       DATLQL010000103         4751 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2506780, whole genome shotgun sequence.
ACCESSION   DATLQL010000103 DATLQL010000000
VERSION     DATLQL010000103.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4751)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4751)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4751
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2506780"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..568)
                     /gene="ribB"
                     /locus_tag="VNB68_01080"
     CDS             complement(<1..568)
                     /gene="ribB"
                     /locus_tag="VNB68_01080"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR00506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008686 -
                     3,4-dihydroxy-2-butanone-4-phosphate synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3,4-dihydroxy-2-butanone-4-phosphate synthase"
                     /protein_id="HVD35974.1"
                     /translation="MSRLDDAVSALRSGRFIMIHDDESREDEVDLVMAAQFVRPRSVA
                     EMRNMAGGMICLAISNEAAKILGLMYMHEMLRRISTNNFTLSKIIFGITPYGDKPSFS
                     ISINHIDTYTGITDADRALTISEMAKICTEINNDGRDQFVRYFRTPGHVPLLIAAKGL
                     IRERMGHTELGVYLMKLANLVPSVVICEM"
     gene            complement(623..1228)
                     /locus_tag="VNB68_01085"
     CDS             complement(623..1228)
                     /locus_tag="VNB68_01085"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HVD35975.1"
                     /translation="MFTGIISGTGTIKSITGSKRTSNSDRRIRLELGRVGKGLKIGDS
                     VSVNGTCLTVIVLKKTAAEFEIVKETMDRTTLGSFKDGDSVNIERSLKLSDRFEGHIV
                     LGHVDGVGEISDVIKFPAEIKMWIRVKGKEMMKYLVPKGSVTVDGISLTVVDVGKYKF
                     SVALVPHTVSKTTIGTKVRGDTVNLEFDILSKYLANLIPKN"
     gene            complement(1731..2606)
                     /locus_tag="VNB68_01090"
     CDS             complement(1731..2606)
                     /locus_tag="VNB68_01090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA ester lyase"
                     /protein_id="HVD35976.1"
                     /translation="MFRTLLFIPGNNERFIKKSLALDADILCYDLEDSVPVKEKYVAR
                     DLLKMYFREQKVDNIRSSIYVRINSSESGSAKADLLDTIQSGVDGIVLPKINDSEEVN
                     EVTKIIKELELERGLGAGRIAIIPSIETARGVMNTYSIARANERVVAVVFGVFDFLHD
                     MDIGDYGDAISYSYARSKIPVEAKAANVASLDAIWQNVNDIDGLISDATTARKFGYSG
                     KSLIHPSHIRPVHEVFLPTPKQIEWAKKVFEALHGAMEGGSGPGAVTLDGKMIDAVHY
                     KQAKAILEMIRAMKL"
     gene            complement(2630..3679)
                     /locus_tag="VNB68_01095"
     CDS             complement(2630..3679)
                     /locus_tag="VNB68_01095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HVD35977.1"
                     /translation="MKAAVYREYNKDPTKVINIEDVDMPKLKPNEVMIKIEAAAYNYN
                     DLWAIWGDPIKVPLPHISGSDSAGVVVEAGSDVVKLKVGDRVVSHSNMSCRVCDLCTS
                     GREYDCNDRLIWGFQTGPLWGGFCQYSHLPEVNVAKIPDNVSFDDAAAVSMVGMTAWH
                     MLVGRAKIRPGLTVLIMGGTSGVGMVGIQIAKLYGCDVIATAGNKEKMDKCLELGADH
                     VVNHREADWYKKVREITKKQGVDVIFEHIGKSTFPQEISLLKNGGTLVATGATTGYDS
                     TIDLRYLFFKGTNLLGSTQGTKAELEQVIYWTSKGKIKPLIGQILPFSDMVKGHVMMA
                     NGDIMGKIVTTPQKL"
     gene            complement(3801..4085)
                     /locus_tag="VNB68_01100"
     CDS             complement(3801..4085)
                     /locus_tag="VNB68_01100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HVD35978.1"
                     /translation="MSVSQPQNNDEEIRKKEAEAAVRQKALMLLLDTNARQRLMNIRI
                     VKPELAGAVENYLISAASAGRLNRALTDQELKQLLINLQHPKKDFKINRI"
     gene            complement(4114..4566)
                     /locus_tag="VNB68_01105"
     CDS             complement(4114..4566)
                     /locus_tag="VNB68_01105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19e"
                     /protein_id="HVD35979.1"
                     /translation="MAKVYDIPADYLIPRFAEHLKKDKKIEAPNWSSFVKTGCHVEKI
                     PQNKDWWYVRCASLLRKIYMHGPLGVSDLRREYGGKKQNGYSLAHHRRAGGAIIRRAL
                     QQLESSGYLIKKGQGRLISDEGVKRMDRISTEIYKELTTSMPELQRYA"
BASE COUNT         1284 a         1085 c          798 g         1584 t
ORIGIN      
        1 acatctcgca aattactact gaagggacta aatttgccaa cttcattaag tatacgccca
       61 attcggtatg tcccatcctt tcccgtatca aaccttttgc cgctatcaac aatggaacat
      121 gccccggagt acgaaagtat ctgacaaatt gatctctgcc gtcattattt atttctgtgc
      181 atattttggc catctcacta atagtaagag ctctatctgc gtcagtgata ccagtatagg
      241 tatctatatg atttatagaa attgaaaacg atggtttatc tccgtatgga gtgattccaa
      301 atattatttt agaaagagtg aaattattag ttgatatacg acgcagcatt tcgtgcatat
      361 acattagccc taatattttt gcggcttcgt ttgaaattgc caagcatatc atacctcctg
      421 ccatgttcct catttcggcg acacttctag gtcttacaaa ttgtgcggcc atgaccaggt
      481 cgacttcgtc ctctctagac tcgtcatcat ggatcataat gaatcttcca gatctcagag
      541 cagaaaccgc gtcgtctagt cttgacacta gggttattgg aattgaaatt aattatatgc
      601 tttactgttt ttcgagtaat tactaatttt ttggtataag attggctagg tatttactta
      661 gtatatcgaa ttctaggtta actgtgtctc ctctgacttt ggttcctatc gtagtttttg
      721 aaactgtatg aggcaccaaa gctacagaga atttatattt tccgacatcg actaccgtga
      781 ggcttattcc gtctaccgtg acggaccctt taggaactaa atatttcatc atttctttgc
      841 ctttgaccct tatccacatc tttatttcag ctgggaattt aattacatca gaaatttctc
      901 cgactccgtc aacgtgccct agaacgatat gtccttcgaa cctatcgctc agctttaaac
      961 ttctctctat attcacagaa tctccatcct tgaaggatcc caatgttgtc ctatccattg
     1021 tctctttgac aatttcaaat tctgcagcag ttttcttcaa gacgattaca gttagacacg
     1081 taccattaac gcttacgcta tcaccaatct taagaccttt tcccactctt cccaattcaa
     1141 gtctgatacg tctatctgaa ttactagttc ttttagaccc cgttatggac tttattgttc
     1201 ctgttccact tattattcct gtaaacatta attacttctc gtgaatcact catacgtcat
     1261 acaaatagat tgcgaaaata tttttggttt ttatgaattg gactgttacc tgctgaccaa
     1321 taagataaaa ggagcgaagc tcgctatttc accttgagag ggatcagtct caataattgt
     1381 aggccaatcc tttaaggaat acaagttaaa aaattttcca tacggcaatt ggaattaaac
     1441 atattggaag agaataatca tccaatggtc tcttatcgaa aggtattcag aaaataggcg
     1501 acgtatatta aatcttggat gactcagcaa aaacaaattt cgatgaatga agtttgaatt
     1561 gttttctctc aaccttcggt ttattgccaa atcgtgacac gatcaactat gtaatatttt
     1621 ccataccttt agacctagcc tactttgctc aacaaattgt ttaagtgatg caaaagtttt
     1681 ctcgtactac attagtgtcc gcggcaatca atccagactt acattccact tcatagcttc
     1741 atggctctga tcatttccag gattgctttc gcttgtttgt aatgcaccgc atctatcatt
     1801 ttaccatcca gtgtaactgc gccaggtcca gatcctcctt ccatagcccc atgcaatgct
     1861 tcaaagacct ttttagccca ttctatctgt tttggtgtcg gtaagaatac ttcatgtacg
     1921 ggcctaatgt gcgaaggatg aatcaaagac ttgcctgaat atccaaattt tctggctgtc
     1981 gttgcatcag atatcaaacc gtcaatgtca ttcacatttt gccatatcgc atccagcgaa
     2041 gctacgttag ctgctttggc ctctacggga attttggaac gggcatatga atagctaata
     2101 gcatcgccat aatcacctat gtccatgtca tggagaaagt caaaaactcc gaacacaacg
     2161 gctaccactc tttcattagc tctcgcaatt gaataagtat tcattactcc tctagcagtt
     2221 tctattgatg gaataattgc aattcgtcca gctcccagac cccgttcaag ttccagttct
     2281 tttattatct ttgtcacctc gttaacttct tcgctatcgt ttatttttgg gagtacgata
     2341 ccatcgacac cactctggat cgtatctaaa agatctgctt ttgccgagcc tgattcactc
     2401 gaattaattc ttacataaat ggatgatcga atattatcga ctttctgctc cctgaagtac
     2461 atttttagca aatctcttgc aacatacttt tcctttactg gaaccgagtc ttccaaatca
     2521 tagcataaaa tatccgcatc cagtgcaagc gactttttga tgaatcgttc attattgcca
     2581 ggaataaata atagtgtcct gaacaacaaa tcgatttatg agaggtagtt cagagttttt
     2641 ggggcgttgt aacgatcttg cccattatat caccattagc catcataaca tgacctttta
     2701 ccatatctga aaatggaagt atctgtccta taagtggctt aatctttcct ttggaagtcc
     2761 agtagatgac ttgttccaat tctgccttcg taccctgggt agatccaagt aaatttgtcc
     2821 ctttaaagaa gaggtacctt aaatcgattg tagaatcata acctgttgtt gcaccagtgg
     2881 caactaatgt acccccattc tttagtaaac ttatttcttg gggaaaggta gatttcccta
     2941 tatgttcaaa aatgacatct accccttgtt ttttagtaat ctctcttacc ttcttgtacc
     3001 aatctgcctc tctatgattg acaacgtgat ccgcgcctaa ttctagacat ttgtccatct
     3061 tttccttgtt tcctgcggta gcaataacat cgcagccata taactttgcg atttgaatac
     3121 ctaccatccc tacgccactt gttccgccca taataagcac ggttagtcct ggtctgatct
     3181 ttgctcggcc gactaacata tgccatgctg tcatcccaac catcgatacg gctgcagcgt
     3241 catcaaatga tacgttgtca ggtattttgg caacatttac ttctgggaga tgactatatt
     3301 gacagaagcc tccccataaa ggtcctgttt gaaaacccca gataagcctg tcattacaat
     3361 catattctct gccagatgtg cacaagtcgc agactctgca gctcatgttt gaatgtgata
     3421 ctactctgtc cccaaccttt agttttacaa catccgagcc agcttccaca actacgccag
     3481 ctgagtcact gccggaaata tggggaagtg gtaccttaat tggatcaccc catattgccc
     3541 aaagatcatt ataattgtag gccgctgcct caattttgat cataacttcg ttgggtttaa
     3601 gcttgggcat atcaacatct tctatgttaa tgacctttgt aggatctttg ttatattctc
     3661 tatatacggc tgctttcata aatctgtcag tagtatgaat acttaatata gttaactaga
     3721 tatgcctgaa tcaaatttcc gaccacagaa taatttgttt cttagttagg ggccatttag
     3781 ctcaaaaagt gaataagcta tcaaatccgg tttatcttga aatctttctt cgggtgttgt
     3841 agatttatta acaactgttt tagttcttga tccgttaacg ccctatttaa tctgccagcg
     3901 gaggcagctg atatcaaata attttctaca gccccagcta gttcgggttt aactatccta
     3961 atgttcatga gcctttgtct ggcgttcgta tccaataaga gcattaatgc cttctgtctt
     4021 acggccgctt cggcttcctt tttccgaatt tcctcatcat tgttttgtgg ctgagagact
     4081 gacatttcct atcgtagtga tattaaatga aacttaggca tatctctgta actcgggcat
     4141 tgaggttgtc aattccttgt aaatttctgt tgaaattcta tccattctct tcacaccttc
     4201 gtcagagata agtctgccct gacctttctt aattaagtat cctgagctct caagctgctg
     4261 aagtgctctt ctaataatag cacccccagc ccttcggtga tgcgcaagac tgtatccatt
     4321 ttgcttctta ccgccgtact cccttctcaa gtctgataca cccaacggac catgcatgta
     4381 gatctttctt aatagtgatg cacagcggac ataccaccaa tctttgttct gaggaatttt
     4441 ttctacatga catcctgttt tgacgaagga cgaccaatta ggtgcctcta ttttcttatc
     4501 ctttttcagg tgctcggcaa atctagggat caagtaatca gcaggaatat cataaacctt
     4561 ggccataata cgttacaaga cttgccctaa ttcccttata aatccttata cctatctata
     4621 atctaacgat aacgtcaggt agctttggtt tctgcgcaaa ccggtactat taatcgttta
     4681 agcaaatctc tgtctatatg attactattt taccaacctg caaaataagc gattcacata
     4741 ttcaatccca c
//
LOCUS       DATLQL010000104         1403 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1974956, whole genome shotgun sequence.
ACCESSION   DATLQL010000104 DATLQL010000000
VERSION     DATLQL010000104.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1403)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1403)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1403
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1974956"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..934
                     /locus_tag="VNB68_01110"
     CDS             <1..934
                     /locus_tag="VNB68_01110"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HVD35980.1"
                     /translation="LILNQNHIAMAQQEPNGTSFQMNNITFTHRTASVNGIQLHYVIA
                     GHGDPVVLLHGWPETWYEWHLVMPALAKNHTVIAPDLRGLGDSSKPLTGYDGKTVAED
                     IHQLVTQLGFKTIFLVGHDIGTQVAYSFAATHPTEVKKLVVMELTIPGFAPAGRMPSW
                     WAIFHQTPDVPEALVQGKELIYLSWFFHNLAFNPAAVTPDINEYVTHYSAPGGMRAGF
                     EYYRAFPQDAIQNMNYSKTNLTMPVLALGAGYIPTFGGNITMPTVIYGMKLLAQNVTG
                     ITVPNSGHWIPEEQPVFLVKLLNNFFSGNSTKTK"
     gene            1040..>1403
                     /locus_tag="VNB68_01115"
     CDS             1040..>1403
                     /locus_tag="VNB68_01115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35981.1"
                     /translation="MNPDYINVLVMLIIVVSVILGFTIYFNNPSLNKAWSVQQKNKDL
                     VVGGVHSPEAQFEKNYANVKGATQTGMVENHTISTIKLNTTQSQQIDKSEFIKAPEFA
                     QISGYINTPNNNSPITLSS"
BASE COUNT          464 a          278 c          260 g          401 t
ORIGIN      
        1 attaatacta aaccaaaatc atattgcaat ggcacaacaa gagcctaacg gtacgtcttt
       61 ccaaatgaat aacataacct ttactcatcg tacagcttct gttaatggca ttcaattgca
      121 ctatgttatt gcagggcatg gtgatcccgt tgttttatta catggatggc ctgaaacatg
      181 gtatgagtgg catcttgtaa tgccagcctt agccaagaac catactgtta ttgcgcccga
      241 tcttcgagga cttggagact cttcaaaacc attaactggt tatgatggta agaccgtagc
      301 tgaagatata catcaactag ttactcagtt gggatttaaa acaatattct tagtaggtca
      361 cgatatagga acacaggtag catattcttt tgcagctacg catcctacgg aagtaaaaaa
      421 gttagtagtc atggaattaa caattcctgg tttcgcacct gctggtagaa tgccatcatg
      481 gtgggccata ttccatcaaa caccagacgt tccggaagcc cttgtacaag gaaaagagtt
      541 gatatattta tcatggttct ttcacaatct tgcgtttaat ccagctgcag taactccaga
      601 tatcaatgaa tatgttaccc attattctgc tccaggcgga atgcgtgcgg gatttgagta
      661 ttatcgagct tttccacagg atgcaattca aaatatgaat tattcaaaga ctaatcttac
      721 aatgccggta ttggcgctag gagcaggata tattccaaca ttcggaggta acatcactat
      781 gcctactgtc atatatggga tgaagctatt agctcaaaat gtaacaggga tcacagttcc
      841 aaattcaggt cattggattc cagaagagca gccagttttt ctagtaaaac tactcaacaa
      901 tttctttagt ggtaattcta ctaaaaccaa atgagagata acccataact ctaaaatact
      961 atgaatgctg atatcaccaa attacccatg gtgaacggaa accatctatt gggaatagtt
     1021 acagagcgga acttaaacaa tgaacccaga ttatattaat gtattagtaa tgctaataat
     1081 agtagtttct gttatcctcg gctttacaat atattttaac aatcctagtc ttaataaggc
     1141 ctggtcagta cagcaaaaaa acaaagactt ggtcgtaggc ggtgttcatt caccggaagc
     1201 tcaattcgag aaaaactatg ccaatgtgaa gggcgctacc caaactggaa tggtagaaaa
     1261 tcatactata agtacgatca agcttaatac gactcaatcc cagcaaattg acaagtcaga
     1321 attcataaaa gcgcctgagt ttgctcaaat tagtggttac ataaatacac ctaataataa
     1381 tagtccaatt acactttcat ctc
//
LOCUS       DATLQL010000105         1080 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_200317, whole genome shotgun sequence.
ACCESSION   DATLQL010000105 DATLQL010000000
VERSION     DATLQL010000105.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1080)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1080)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1080
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_200317"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            269..715
                     /locus_tag="VNB68_01120"
     CDS             269..715
                     /locus_tag="VNB68_01120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent transcriptional regulator"
                     /protein_id="HVD35982.1"
                     /translation="MNQEEELFVGTAELEHIEMYLKAIWHIREKKEQVKVSSIAKILN
                     VTQPSVVQMLHKLNDSKLVEYRKGNTIMEMTLEGEKIGERMIRNTRLLEVMMKESLKI
                     EIDEEMVCGIEHHMKDIFTDALCTLLKHPRKCPHDFDIPMGNCCKN"
     gene            complement(771..>1080)
                     /locus_tag="VNB68_01125"
     CDS             complement(771..>1080)
                     /locus_tag="VNB68_01125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35983.1"
                     /translation="VPPINRESVINGDEIKGPKFVFHLITLSKMFKENILPVTVATYK
                     LPLSNTGEEMVGPTAVTHRRDGLIIGLDLETPVLCGFPLNIGQECTSRFMFFISCLIC
                     "
BASE COUNT          356 a          182 c          222 g          320 t
ORIGIN      
        1 tttgttgttg gatttgatca aggacaccta tttagttcgg ttcagggtca aaaagcattt
       61 gatacaaaat ggcttcatga attttaccac gatatgcgac atgcagctgg atttccttgt
      121 cattgattag atatatttta tgcagagtgg tattgctaca cgatgtgagg atttcttctt
      181 tgttttcata ctctcggctt cacaaagatc aaagcagaaa tgaccttaat gatattctct
      241 acgagaaccc taaggatagg cttttgacat gaatcaagaa gaagaacttt tcgttggtac
      301 tgcggaatta gaacacattg aaatgtatct taaggcgatt tggcatatac gtgagaagaa
      361 ggaacaagtg aaggttagct ccatagccaa gattcttaat gtaacccaac cttcggtggt
      421 tcaaatgcta cataagctaa acgattctaa gttggttgag tataggaaag gcaatacaat
      481 aatggaaatg actcttgaag gcgagaagat aggagagaga atgatcagga acactagact
      541 attagaggtt atgatgaaag agtcgttaaa aatcgaaatc gacgaagaaa tggtgtgtgg
      601 aatagagcat cacatgaaag atatcttcac tgacgcatta tgtacactac ttaagcatcc
      661 acgaaaatgt ccccatgatt ttgatattcc aatggggaac tgctgtaaaa actaatagat
      721 ctgtattatt cgaatctatg ttattcccaa attttatgct acatatcaat tcaacaaatc
      781 agacagctta tgaaaaacat aaatcttgat gtgcattcct ggccgatgtt tagaggaaac
      841 ccacagagaa caggagtctc tagatctaag cctataataa gaccatccct tctgtgggta
      901 acagcagtcg gacctaccat ttcctctcca gtgtttgata gaggcagttt gtatgttgca
      961 acagtaacag gaagaatatt ttctttgaac atttttgaaa gggtgataag atggaacaca
     1021 aattttggcc ctttgatttc atcaccgtta attacagatt ctctattaat tggcggaaca
//
LOCUS       DATLQL010000106         1545 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2332037, whole genome shotgun sequence.
ACCESSION   DATLQL010000106 DATLQL010000000
VERSION     DATLQL010000106.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1545)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1545)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1545
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2332037"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            246..1250
                     /locus_tag="VNB68_01130"
     CDS             246..1250
                     /locus_tag="VNB68_01130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HVD35984.1"
                     /translation="MGHRKYSAPRRGSMAFYPRVRARSLESRIRTWPNSMSDKPSLQG
                     FAGFKVANLNVMTVDDREKTPNFGKNLLNPSTLIATPPLKIIGIRGYKNTVYGKRAVF
                     DVFGKDSDKNLVRKATFHNKESKLETIETIADKVSDIEAVVAVFPESLSLSQKKPFVW
                     EIPISAKDSKSKLVFAKENLGKEIRIKEVFQPGQFIDVSAITRGKGVEGPITRFGVKR
                     KQHKSRKSVRAVGTLGPISPAVVMYTVPRQGQRGFHQRTEYNKRILLISNDEKENGEI
                     GIGPKGGFDHFSPVNGDYIIVRGSVPGVPKRLIKMRMPLRKKQKKIVEPKILEVIVRK
                     "
     gene            1247..>1545
                     /gene="rplD"
                     /locus_tag="VNB68_01135"
     CDS             1247..>1545
                     /gene="rplD"
                     /locus_tag="VNB68_01135"
                     /inference="COORDINATES: protein motif:HMM:NF012782.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HVD35985.1"
                     /translation="MITKVMDIGGKEIDDLVLPPIFDTPYRPDIIKKVYVNLKSLRYQ
                     PQGRYPAAGEMVSAESRNTGLGIARIARARGEGFPRAGQAAGVAGVRHGRVAHPPV"
BASE COUNT          507 a          282 c          360 g          396 t
ORIGIN      
        1 tagaaatttc agacttccca ttcgtaatta atatgtttcc ggatcaagga acacaaactg
       61 tgcgtgttga agaagctatt cttggcacat tagctattat caatcagtac actattaggt
      121 aaaacctgtt caatgtacca ctaatcaatt atcagaataa tttagagtac tggttccata
      181 aattccgctt tttttgtgtc aagttataaa tttattaaag ggagcgtaag acttttgctc
      241 ctagcatggg tcatcgtaaa tacagtgctc cccggagggg cagtatggca ttttatccaa
      301 gagtgagggc acgcagtttg gagtctagga ttcggacatg gcccaattct atgtcagata
      361 agccaagcct tcagggcttt gcaggtttca aggttgccaa tttaaacgtt atgactgtgg
      421 atgatagaga aaaaactccg aattttggta agaatcttct gaatccctct acactaattg
      481 ctacacctcc gctcaaaata attggaatcc ggggttacaa gaataccgtc tacggtaaac
      541 gcgcagtatt tgatgttttt ggtaaggaca gtgataagaa tttagtaagg aaagctacat
      601 ttcacaacaa ggaatcaaaa ctcgaaacta tcgagacaat tgcagataaa gtaagtgaca
      661 tcgaggctgt agttgcagta ttcccagagt cattatctct ttcacaaaaa aaacccttcg
      721 tttgggaaat accgatttcg gcgaaggatt ctaaatcaaa gttggtattt gccaaagaga
      781 atcttggtaa ggaaatccgg attaaggaag tctttcagcc tggtcaattt atagacgttt
      841 cagcaatcac aaggggtaaa ggcgtagaag gaccaatcac aagatttgga gtaaagagaa
      901 aacagcacaa gtcaagaaag agtgtgagag cggtaggaac tctgggtcca atatctcccg
      961 cagtagtcat gtatacagta ccaagacaag gacagagagg ctttcatcag agaactgaat
     1021 acaataaacg tattctgttg atttcgaatg atgaaaaaga aaatggcgaa atagggattg
     1081 gtccgaaggg aggatttgac cactttagcc cagttaatgg agattacatc atcgtaagag
     1141 gttccgttcc aggagttcca aagagattga taaaaatgag aatgccactc agaaaaaaac
     1201 aaaagaaaat tgtcgaaccc aaaatcttag aggtaattgt taggaaatga ttaccaaagt
     1261 tatggacatt ggtgggaaag agatcgatga tctggttttg ccgccaatat ttgatacgcc
     1321 ctacagaccc gatattataa agaaggttta cgtaaatctc aagtcgctca ggtaccaacc
     1381 tcaaggaaga tacccggcag ctggagaaat ggtaagtgcc gagtctcgta atactggact
     1441 tggaatagct cgaatagctc gtgcgcgagg agaaggattc ccaagagcag ggcaggcggc
     1501 gggagtagct ggtgtacgtc acggaagggt cgctcatccc ccagt
//
LOCUS       DATLQL010000107         1119 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1265830, whole genome shotgun sequence.
ACCESSION   DATLQL010000107 DATLQL010000000
VERSION     DATLQL010000107.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1119)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1119)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1119
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1265830"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..360
                     /locus_tag="VNB68_01140"
     CDS             <1..360
                     /locus_tag="VNB68_01140"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HVD35986.1"
                     /translation="WKKQVRELIMSNCRHFDLLVSGIRMNLEYIPAACAILYCSKRVM
                     GLYCLGTLPKFRRKGLAFQIVKSSISRAKTRGMKFFFVQTFLSDGFAEMYEKVGLQLA
                     YRKRIYAYNSPLIGGSC"
     gene            530..1096
                     /locus_tag="VNB68_01145"
     CDS             530..1096
                     /locus_tag="VNB68_01145"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004844 - uracil DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HVD35987.1"
                     /translation="MASELPVDSLEKVSFEVKGCPLCKLSKTRKNAVPGEGNHSGKIL
                     FVGEAPGKKEDEEGKPFVGQAGRILDEALSKAGIQRSEVYITNVVKCRPPNNRRPEED
                     ELSACSQYLERQIFLILPKIICILGGTAYFSLLGGHSIMANRGKIVEKDGKKFFLTVH
                     PAAAIYDKSMLSTLENDLSSLASKIRDT"
BASE COUNT          348 a          199 c          255 g          317 t
ORIGIN      
        1 tggaaaaagc aagtacgcga gttaatcatg tcaaactgtc ggcatttcga tctgctggtt
       61 tcaggaataa gaatgaattt agaatatatc cctgctgctt gtgcaattct ttattgttcc
      121 aaaagggtaa tggggcttta ttgtcttggt accttgccca aatttcgaag aaaaggtctg
      181 gcttttcaga ttgtaaaatc ttcaatttcc agagcaaaaa ccagaggaat gaaatttttc
      241 tttgttcaaa catttttgag tgatggtttt gcggaaatgt acgaaaaagt tggacttcag
      301 ctggcatatc gaaaacgaat ttatgcttac aactctcctt tgatcggggg atcttgctaa
      361 gttgctgact aaagtacaat tgacattacc tcggctatga agttcttaaa atcaaagata
      421 ctgagtaatc gtgaaatacg gattctatag taagtaggat taaaaggttg tcagaacgct
      481 agcattcatg acaaggttta caggtagtac agacaccatt atagtctaga tggcgtcaga
      541 gctgcccgta gattcgcttg aaaaagtctc gtttgaagta aagggttgcc ctttatgtaa
      601 gctttccaaa acgagaaaaa atgcggtacc cggcgaggga aatcattctg gaaaaatatt
      661 gtttgtcggt gaggccccag gcaagaagga ggatgaagaa ggtaaaccat ttgtaggaca
      721 ggccggaaga attttggacg aggcattatc taaggctgga attcagaggt cagaagttta
      781 catcaccaat gtagtcaagt gccggcctcc taacaatagg cgccctgagg aagatgaact
      841 ctcagcttgt agtcagtatt tagagaggca aatttttctt atcctaccaa aaataatttg
      901 catcctggga ggcacagcat atttttcact tctgggaggt cactcgataa tggcaaatcg
      961 aggcaagata gtagagaaag atggtaagaa attcttctta accgtccatc ctgctgcggc
     1021 gatttatgac aaatcgatgc tttccacttt agaaaatgac ttgtcgtccc ttgctagcaa
     1081 aatacgtgat acctgaatat aacaagaaga accttctgg
//
LOCUS       DATLQL010000108         3092 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1622554, whole genome shotgun sequence.
ACCESSION   DATLQL010000108 DATLQL010000000
VERSION     DATLQL010000108.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3092)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3092)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3092
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1622554"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..752)
                     /locus_tag="VNB68_01150"
     CDS             complement(<1..752)
                     /locus_tag="VNB68_01150"
                     /inference="COORDINATES: protein motif:HMM:NF019474.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HVD35988.1"
                     /translation="MGKYDYTGVEQNTRAFLENLQENTGPPLYKLSPAQARNVLSGLQ
                     SGHASKLHADIENRTIPGGPTGEISIQIARPPGSSNEILPVVMYFHGGGWVLGGFDTH
                     ERLVRELANGAHGAIVFVKYTPSPEAKYPVPVEQAYSATKWVAENSQAINVNSSRLAV
                     AGDSVGGNMAAAVTLLAKERGEPKIMLQLLFYPVTDANFDTPSYMAYQDGYFLTREAM
                     KWFWDNYTSNQTNRKEPTVSPLQASIEQLRGLP"
     gene            929..2845
                     /locus_tag="VNB68_01155"
     CDS             929..2845
                     /locus_tag="VNB68_01155"
                     /inference="COORDINATES: protein motif:HMM:NF013259.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35989.1"
                     /translation="MLDKIIPNFRTDPKDYSKVEIAKINSNELRDNLFNEFRDQYSEN
                     ISWESEQIAKSHGIYLEFNRAKTGNEKDWMYMIRISIPGGGPITSDQWNILDRVADNC
                     TMPPSDIYPGARPSLRITTRQNIQLHWVRKKNVVDTISEIAKSGFFTINGCGDNTRNV
                     IGCPLSYYSNKWAQKVGKYFALPTAAYIEIFEIDPEYLRKAGLQDRKAGVTRFDYGPN
                     QLNRKFKIAFSAIHNVEGKKKHVPDNCVELRTNDIGVAPIKKSADDGDDKVDRFQVYI
                     GGGQGQQSGKPTLSTLGEPFGIFTEDTLLKGLDGIVSVHKEWGDRQNRHWGRLKYVVK
                     VKGIEWFREQVRNIGDINFEAPILDYDYGDRNLHLGWIKQEKIGDYGENLKWCYGAFI
                     ENGRIIDGSPNGDLKRMIKYLMNKYPAVQLFITPNQHLLFSNIGNSEKGQFENDMKLF
                     GYGVRKKVINLANGATEVKSRPYSKLRMLSGACVGRDTCRLTYTDSEKYEPYLIDKLE
                     EKWGDLNESIGITGCEKQCYRPATKTIGWIGTGLNLYQLTIAGTEDGRHQGMPLMDPN
                     SKEQYLHFVPRKDVAEVTDVLAEFYMKYRSKEEERPGGMGYFLRRVKAKEIISCLKSN
                     PKTAELMKKAFKGI"
BASE COUNT         1040 a          516 c          656 g          880 t
ORIGIN      
        1 ggcaatcccc tgagctgctc tattgaagct tgtagcggcg agacggttgg ttcttttcga
       61 tttgtttgat ttgaagtata attatcccag aaccatttca tagcctcacg ggttagaaag
      121 taaccatctt gatatgccat gtaagagggt gtgtcaaaat tggcgtcggt aactggatag
      181 aaaagcaatt gcagcataat tttaggttcg cctcgctctt tggcaagtag cgtaacagct
      241 gcagccatat tgcctcctac actatcacca gctactgcta gacgtgagga atttacattt
      301 atggcttgac tattttcagc aacccatttt gtggcactat atgcctgttc tacaggaacc
      361 ggatatttgg cttctggaga gggagtatat ttgacaaaga caatagctcc atgtgcaccg
      421 ttagcaagct ctcttaccaa cctttcatga gtatcaaacc cgccgagaac ccatccacca
      481 ccgtggaagt acatcacaac aggtagaatt tcattgctgc taccgggtgg tcgagctatc
      541 tggatcgata tttcgccagt cggtccacct ggtatggtgc ggttttctat atcagcgtga
      601 agttttgaag catgaccaga ctgtaggcct gataatacat tccgggcttg cgctggtgat
      661 aacttgtaaa gaggtggccc cgtgttttct tgtagatttt ccaaaaatgc tcgagtattt
      721 tgttctactc cggtatagtc gtattttccc acatcaccgt atgcatttac tcctgtatag
      781 ctatatttct taaactacca tattatgagt ggccatccag ccttcttgat cagagctcaa
      841 aatgatgatt tgtagacata caggaacatc aattatgttt taaataagat gacttcgtat
      901 atttgtacag gtatctaata ttttcagtat gcttgataag ataattccaa acttccgcac
      961 tgatcccaag gattattcta aagtagagat tgcaaagatt aactcaaatg agttaagaga
     1021 taatctattc aatgagttca gagatcaata ctctgaaaat atctcctggg agtcagaaca
     1081 aatagcaaaa tcacatggaa tttacctaga gttcaataga gcaaagacag ggaatgagaa
     1141 agattggatg tacatgatac gcataagtat acctggaggt ggtccaataa catctgacca
     1201 atggaatatt ctggacagag tagctgacaa ctgcacaatg cctccttctg acatatatcc
     1261 tggcgctaga ccaagtctta gaataacaac aaggcaaaat atacagcttc attgggtaag
     1321 gaaaaaaaat gtagttgata ctataagcga aatagcaaaa tctgggttct tcacaattaa
     1381 tggctgtgga gataacacta gaaatgtaat tggctgtcct ctatcttact attctaacaa
     1441 atgggctcaa aaagttggca aatattttgc gcttcctaca gctgcgtata tagagatttt
     1501 cgaaatagat ccagagtatt taagaaaagc tggactacaa gataggaagg caggagtaac
     1561 tagattcgat tatggtccga atcagcttaa cagaaagttc aagatagcat tttcagcaat
     1621 tcataatgta gaaggaaaga agaaacatgt tccagacaat tgtgtagagt taagaacaaa
     1681 tgatatcggt gttgctccaa ttaagaagag tgctgatgat ggtgacgaca aagtagatag
     1741 attccaagtc tatataggcg gaggtcaagg tcagcaatca ggtaaaccaa ccctctcaac
     1801 ccttggagaa cccttcggca tattcactga agataccctt cttaaaggtc tagatggtat
     1861 agtgagcgtt cacaaggaat ggggagatag acaaaaccga cattggggta gactaaaata
     1921 tgtagttaag gtgaaaggaa ttgaatggtt tagagaacag gtaagaaata ttggtgacat
     1981 aaattttgaa gctcctatat tggattatga ctatggagat agaaatttgc accttggctg
     2041 gataaagcaa gagaaaatag gtgattatgg tgagaaccta aaatggtgtt atggtgcatt
     2101 tatagaaaat ggtagaataa tcgatggaag tccaaatggt gatctaaaga ggatgataaa
     2161 atatctaatg aacaaatatc cagctgttca acttttcatt acgcctaatc agcatttact
     2221 gttttcaaat ataggcaaca gtgaaaaagg gcaatttgag aatgatatga agttatttgg
     2281 ttatggtgta cgaaaaaaag ttatcaatct ggccaacggt gcaacagaag taaaatctag
     2341 accatattca aaattaagaa tgttatctgg agcgtgtgtg ggaagagata cttgtagatt
     2401 aacttatact gactctgaaa aatatgaacc ttatctaatc gacaaattgg aggagaaatg
     2461 gggagatctg aatgaatcaa tcggtattac aggttgcgaa aaacaatgtt atagaccagc
     2521 aacaaaaact ataggttgga tagggactgg tcttaatctt taccaattaa caatagctgg
     2581 aacagaagac ggaaggcatc aaggcatgcc actgatggat ccaaattcaa aagaacaata
     2641 tcttcacttt gtaccacgta aagatgtagc agaagttaca gacgtactcg cagaatttta
     2701 tatgaaatat aggtcaaaag aagaagagag acctggtgga atgggatatt tcttgagaag
     2761 ggttaaagct aaagaaataa tttcttgttt aaagtcaaat ccaaagacgg cagaattaat
     2821 gaagaaagcc ttcaagggaa tttagcagta gtgtgtccaa gcaaacagat tatgatcttt
     2881 atgtaagctt aatggggatt attggtaatt cattgctgct aatattcaag gtttttatta
     2941 acgttgagaa cacgaaacgg atgtagtatt ctgcatacaa aagtagtcct ttatatctga
     3001 taaataaacc ctagatgagt taacattagc ttaacagtta ttaagtcatt cttttttttg
     3061 ccttacaaat atttagtata tttaaaatga ac
//
LOCUS       DATLQL010000109         1462 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1978568, whole genome shotgun sequence.
ACCESSION   DATLQL010000109 DATLQL010000000
VERSION     DATLQL010000109.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1462)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1462)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1462
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1978568"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(100..>1462)
                     /gene="glnA"
                     /locus_tag="VNB68_01160"
     CDS             complement(100..>1462)
                     /gene="glnA"
                     /locus_tag="VNB68_01160"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HVD35990.1"
                     /translation="LRGSVGVDGSSVKGFANIEESDLLLVPDRSTVRLTPISSNYKTA
                     TVIADVFKGFGSGRLTKDPRYVSQRLEEHLTQNNIMCQIGPEVECFIFDSIDFANKDN
                     NTSHPKIISSEQYENGKYPIRRKGGYDAPPFQDSLMEFRFVVSEILTKYYAIDVTNLN
                     HAVASNGQIEINFTHNTLTRSADNVQIYKDVVRNIAKQNNKVATFMPKPIFSQEDPKN
                     GSDNGSGMHTSVSLWKGNSQSSSSAHRSSMSGTNMFYDGNDSYAEISQSGRYFIGGVL
                     EHASSLAAIVAPTVNSYHRMIPGYEAPVYVAWSRGNRSAIIRVPVNEKNNSKSKRVEF
                     RAPDPSANPYLAFSSIVAAGLDGIKKKIDAGSPVDSDIYKMSDQDKSTLGIKSLPGSL
                     TEALDALKSDCDYLKLCFYPELLETYVTLKREESFEVEGSKSTSTQPELLRSKLFMRY
                     YDV"
BASE COUNT          396 a          296 c          262 g          508 t
ORIGIN      
        1 ttcgcatctt gcttgcgaca atactaaatt gttctgaaat cacattattt cgaatttata
       61 cttttcatct aaccacatat tacttgtagt ttgaatgcat catacatcgt aatagcgcat
      121 aaagagtttt gatctcaata attcaggttg agtggatgtt gacttagatc cttcaacttc
      181 aaatgattct tctcttttta acgtcacata cgtttctagg agttcaggat aaaaacatag
      241 tttcaggtag tcacagtcgc tctttagtgc gtccagggct tctgtcaagc ttccaggaag
      301 agattttatt cccagtgtac ttttgtcttg atcagacatc ttgtaaatat cgctatcaac
      361 tgggcttcca gcgtctattt tctttttgat gccatcgaga cctgctgcta ctattgaaga
      421 aaatgcgaga tatgggttcg ctgatggatc aggtgctcta aattcaactc gcttcgattt
      481 tgaattgttc ttttcattaa ctggtactcg gataatagca gacctatttc ctcttgacca
      541 cgccacatag acaggagctt cataaccagg aatcattcga tggtaagagt tcactgtcgg
      601 cgctacaatt gcagctaatg aagacgcatg ttcaagaact ccgcctataa aatatcgccc
      661 tgactggcta atttctgcgt agctgtcatt tccatcgtaa aacatattag tacccgacat
      721 agaagaccgg tgggcagaag aagaggactg tgaattgcct ttccacaaac taacactagt
      781 gtgcattcca gagccattat cactaccatt ttttggatcc tcttgactaa atatcggctt
      841 tggcataaat gttgccactt tattgttttg ctttgcaata ttccttacaa catccttgta
      901 tatttgcaca ttatctgcag atcttgttag tgtgttatga gtgaagttaa tttctatttg
      961 gccattactt gctactgcgt ggtttagatt tgttacgtca atagcataat attttgttag
     1021 gatttcagat actacaaacc taaattccat taaagagtcc tgaaatggag gagcgtcata
     1081 tccccccttt ctgcggattg gatacttgcc attttcgtat tgttcagatg atataatctt
     1141 tggatgtgag gtattattat ccttattagc aaaatctatg ctgtcaaaaa taaaacattc
     1201 aacctcaggc cctatctggc acatgatgtt attttgtgtt agatgttctt ccaaacgctg
     1261 agacacatat cttggatctt tagttaatct gccagagcca aatcctttga atacatccgc
     1321 aattactgta gcagttttgt aatttgatga tatgggtgtc aatcttactg tagatctatc
     1381 tggtactagt aatagatctg attcttctat gttcgcaaat ccttttacag atgaaccatc
     1441 tactccgacg cttcctctta at
//
LOCUS       DATLQL010000110         1894 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_912477, whole genome shotgun sequence.
ACCESSION   DATLQL010000110 DATLQL010000000
VERSION     DATLQL010000110.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1894)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1894)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1894
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_912477"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..306
                     /locus_tag="VNB68_01165"
     CDS             <1..306
                     /locus_tag="VNB68_01165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35991.1"
                     /translation="IAEESITVKRGESKEIPVLVSTDKQVDLRMIASSTLTPTGGFGN
                     STSSFSQDSVSVLPGEEKKISFLITPSMDTTPDDYTFMIGVENDQVSYMKAISVKIV"
     gene            complement(491..1684)
                     /locus_tag="VNB68_01170"
     CDS             complement(491..1684)
                     /locus_tag="VNB68_01170"
                     /EC_number="2.7.2.3"
                     /inference="COORDINATES: protein motif:HMM:NF012389.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004618 - phosphoglycerate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HVD35992.1"
                     /translation="MLRSISDLDDLQYYGKSVFMRVDFNVSVNDGVIGEDYRIRMAIP
                     TIEYLAKRGAKVILASHLGRPKTRDQTKSLEPVAKRLGEILGNSRVSFVDDCIGNVVL
                     DKIKKLALGDILVLENLRYHQEEENNESLFSRKLADLAEIYVNDAFSTSHRKHASTYG
                     TTEYFDIRLAGFSLKKEVEYLSMIKEKPHKPFTVVVGGSKIKDKIGALENLLPKADKL
                     LVGGAAAYTFLKAKGTKTGNSQIDEEHFAWVTKALKLYGDKILLPDDHIVSSSPTDSS
                     FSLVKGDIPDGMIAYDIGNDTSRRYSAEVGGSGSGTVFWNGPMGMFEKGQYANGTINI
                     AKSMALAFWRGSKTLVGGGDTLEAMKTAGVSESEVSHVSTGGGATLRFLAGDGMPGLE
                     AIQRI"
BASE COUNT          542 a          426 c          332 g          594 t
ORIGIN      
        1 atagccgagg agagtatcac tgtaaaaaga ggagaaagta aagaaattcc agttttagtc
       61 tctactgaca agcaggtaga tcttagaatg atcgcctctt caactctcac tccgactgga
      121 ggatttggaa attcaactag ttcctttagc caagattcag tttcggtgct gcccggcgag
      181 gaaaaaaaga tatccttttt gatcacgcct tcgatggaca caacccctga cgattataca
      241 ttcatgatcg gggtagaaaa cgaccaagtt tcatatatga aggcgattag cgtaaaaatt
      301 gtatgatcta cttttgaaaa ctgaattccc ttaatttcat atatctcgat tttaagaata
      361 tgatgaagtc gtggtatttc gaagtcatat caacaattaa aatcattgaa gcaaaaaatt
      421 aactccaatt aatgaagata aaccgacagc tacagtaacc tatacttctt ccagtaacaa
      481 aatgtttaac ctatatcctt tgtattgcct cgaggcctgg catcccgtct ccagcaagga
      541 accttagcgt tgctccaccg cccgtagaaa catgggatac ttcactttca gatactcctg
      601 ctgttttcat tgcctcgagg gtatcccccc caccaactaa tgtctttgat cctctccaaa
      661 atgcaagtgc catacttttt gctatgttaa tagttccatt tgcgtattga cctttttcaa
      721 acatgcccat gggcccattc caaaataccg taccagatcc acttcctcct acctctgctg
      781 agtagcgtct cgaagtatca ttgcctatgt catatgcaat cattccgtca ggtatgtccc
      841 cctttaccaa tgagaaagag ctgtcagttg gtgacgaaga gacgatgtgg tcatctggaa
      901 gcaatatctt gtccccgtac aatttgagag ctttcgtgac ccacgcaaaa tgttcctcat
      961 caatttgtga attacctgtc tttgtcccct tagcctttag aaatgtgtaa gcagccgcac
     1021 cacctacaag tagcttatct gccttgggaa gtaaattttc aagagcacct atcttatctt
     1081 taatctttga tcctcccact acgaccgtaa atggtttgtg tggcttttct tttatcatcg
     1141 aaagatattc tacttctttc tttagactga atcctgccaa ccttatgtca aaatattccg
     1201 tagtcccgta agtagatgcg tgtttacgat gagacgtact aaatgcgtca ttgacatata
     1261 tctcagccaa atctgcaagt tttctactaa ataaggactc attgttctct tcttcctggt
     1321 gatatcttaa attttcaaga actagaatat ctccaagagc aagctttttt attttatcca
     1381 aaactacatt tccgatacag tcatctacaa acgatactct tgaatttcct aatatctccc
     1441 ccagtctttt tgcaacaggc tcaagagatt ttgtttggtc acgtgtcttt ggcctgccca
     1501 agtgggaagc caaaattact tttgcaccac gcttagccaa atattcgatt gtcggaatgg
     1561 ccatacgtat cctgtaatcc tctccgatga ccccgtcgtt gacactgacg ttaaaatcta
     1621 ccctcatgaa gacgctcttt ccataatatt gaagatcgtc taggtctgaa attgatcgaa
     1681 gcatgactat tttgtcaaat atgcatattg tgagtggctg aataaacctt ccttcattcg
     1741 agtgagaatg tgaacgactg aatttctaac tacatggcaa ttcttcatca gcgatacaac
     1801 atgcaatttg aagaggatat ctataagaaa actagatgaa ttaggtatag atgttgttat
     1861 cggattttgt tatttctata gtaaccttgt cgcc
//
LOCUS       DATLQL010000111         1279 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_736221, whole genome shotgun sequence.
ACCESSION   DATLQL010000111 DATLQL010000000
VERSION     DATLQL010000111.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1279)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1279)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1279
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_736221"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            306..>1279
                     /locus_tag="VNB68_01175"
     CDS             306..>1279
                     /locus_tag="VNB68_01175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase"
                     /protein_id="HVD35993.1"
                     /translation="MEENRHGRTVSSGGENTGFDVRKAGDASVVLIGLPSVGKSTLLN
                     SLTNANSEVASYHFTTLTAIPGMMECFGAKIQVLDLPGIVEGAAKGKGFGKRVLSVAR
                     NADLILLVLDVFQLKHVKILEKELGEVGIRTNQRSPEVLVEKTHAGGLSVQTQVPIKM
                     SISLAKEILRIHGIHNGRLIIREPNLTDEQLIDVLSGNTLYLQSLKVINKIDLVDKRF
                     IKDLVSTVGGDFVPISADKNTNIEFLKRAIYRKLDFIRIFLKPRGGEADYEEPLIMKR
                     GCIISDVCDKIHRNFIKDFRYAYVWGKSVKFDGQKVGVDHKLADNDILT"
BASE COUNT          412 a          215 c          284 g          368 t
ORIGIN      
        1 cttcttcgac caaatgatac tctgttatta tgtctcaaat caatatgggt gatgaatctt
       61 attcattctc tctctgcggg tcatctccca tttgcagtgt accatcgata gttcattgta
      121 tgtcgatgcc gacagcacac aagatattta tcaagatatt tctttagtat cgtaggggta
      181 tccttctggg aattcctgag aaaataaaag ctattgaaga agaaatccac aagacgcaaa
      241 ttaacaaggc tactgaattt catattggaa ttctcaaagc aaaaatagca cgtctaaaac
      301 gtgagatgga ggaaaataga cacggaagaa ctgtatcaag tggcggagaa aatactggtt
      361 tcgatgttcg gaaggctggc gatgcttctg ttgttttaat tggattgcca agtgttggaa
      421 agtctactct tcttaattcc ttaacaaatg ctaactcgga ggtcgcatct tatcatttca
      481 caacacttac cgctattcca ggcatgatgg aatgttttgg agccaagatt caggtcctgg
      541 accttccggg tatagttgaa ggcgccgcca agggaaaagg gtttgggaag agagttcttt
      601 ctgttgcgag aaatgctgat ctgatactgc tagtactaga tgttttccaa cttaaacacg
      661 tgaaaattct ggagaaggag cttggtgaag tcggaataag gactaatcag aggtcacctg
      721 aagtattagt ggaaaagact catgctggag ggctttccgt gcagactcaa gtaccaataa
      781 aaatgtcgat ttcgttggct aaagaaatac tacgaattca tggaatacat aacggtagat
      841 tgattatcag ggaaccgaac ctgactgatg agcaattgat tgacgtgtta tcaggaaata
      901 cgctctatct gcaatctcta aaagttatta acaaaattga tttggtagac aaaaggttca
      961 tcaaagacct tgtctcaaca gtaggaggcg attttgttcc tatttccgcc gataaaaaca
     1021 cgaatataga atttttgaaa cgagcaattt atcgcaaact agacttcata agaattttct
     1081 taaaacctag aggaggcgag gctgattatg aagaaccgct cataatgaaa cgtggttgta
     1141 ttattagtga tgtctgtgat aagatacaca gaaattttat taaagatttc agatatgcat
     1201 atgtgtgggg gaaaagtgta aaatttgacg gacagaaggt tggagtggat cataaattag
     1261 cagacaatga catcttaac
//
LOCUS       DATLQL010000112         1650 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_381580, whole genome shotgun sequence.
ACCESSION   DATLQL010000112 DATLQL010000000
VERSION     DATLQL010000112.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1650)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1650)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1650
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_381580"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..476
                     /locus_tag="VNB68_01180"
     CDS             <1..476
                     /locus_tag="VNB68_01180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="NusA-like transcription termination
                     signal-binding factor"
                     /protein_id="HVD35994.1"
                     /translation="EKIKLTSDELRLISLFQGVTNATARDCVVDEKMDRVIFIVNKGQ
                     MGLAIGKGGMTIKQLQSVIGKKVELVEYSDDASMFIRNILNNDMVNNVKINERMDGTK
                     QAVVSVDLKKKGVVVGREGRNAEKARLLAKRYFQISNVLIVSEEQTTQNNTGMNI"
     gene            477..914
                     /locus_tag="VNB68_01185"
     CDS             477..914
                     /locus_tag="VNB68_01185"
                     /inference="COORDINATES: protein motif:HMM:NF003254.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HVD35995.1"
                     /translation="MAKSPLGLFAGRVLSSKRSRARWANKYYKRRMLMLDKKANPLEG
                     APQARGIVLEKVGIESKQPNSAVRKCVRVQLIKNGKSITAFLPRDGALNFVDEHDEVI
                     LEGIGGSMGGAMGDIPGVRWQVFKVNGVSLNELVRGRKEKPRR"
     gene            920..1528
                     /locus_tag="VNB68_01190"
     CDS             920..1528
                     /locus_tag="VNB68_01190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HVD35996.1"
                     /translation="MSAKESVNILLFNKWDTRKIEVNDLGLQKVISLKPATVIPITFG
                     RHEHQRLKKAEVNIIERLANKLMHFGKKYAKNTGRMGGKKGKAMSTIRTALDIIYLET
                     AKNPVEVLIRAIQNVSPNEDTTRIVYGGVVYHVSVDVAPLRRVDLALRFIAEGVKEST
                     YSSPQTIEEALAKELISASNNDMASHAVKKKNEQERIAMASR"
BASE COUNT          563 a          259 c          393 g          435 t
ORIGIN      
        1 ctgaaaagat caagttgact tctgatgaac tacgacttat atctctgttt cagggtgtta
       61 ctaatgcaac agcccgagat tgtgttgtag atgaaaaaat ggacagagtt atttttatag
      121 ttaataaagg ccaaatgggt cttgcaatag gaaagggtgg gatgaccatc aagcaattac
      181 agagtgtcat tggaaaaaag gttgaacttg ttgaatattc tgatgatgct tcaatgttta
      241 tccgaaatat actcaataat gatatggtaa ataatgtaaa aattaacgaa agaatggacg
      301 gaacaaaaca agcagttgtt agcgtagatc ttaaaaaaaa gggcgttgtt gtcggcaggg
      361 aaggcagaaa tgctgagaag gctagactac ttgcaaagcg atacttccaa atatccaatg
      421 tgctgatcgt aagtgaggaa cagacgacac aaaataatac tgggatgaat atctgaatgg
      481 ctaaatctcc gttaggatta tttgctggcc gcgtactcag ttcaaaaagg agccgagcca
      541 ggtgggcgaa taaatattac aagagaagaa tgcttatgtt agataaaaaa gctaatcctc
      601 tagaaggtgc cccacaagct aggggcatcg tattggagaa ggtgggtatt gaatctaaac
      661 agcctaactc tgcagtcaga aaatgtgtca gagtacagtt gatcaaaaac ggtaaatcaa
      721 ttaccgcttt ccttccgagg gatggagcgt tgaactttgt tgatgaacac gatgaagtga
      781 tattggaggg catcggcgga tcaatgggtg gagctatggg tgatattcct ggagtgaggt
      841 ggcaagtatt caaggtaaat ggggtatctt taaacgaact cgttcgaggc agaaaagaaa
      901 aacctaggag ataaatcaaa tgagtgcaaa agaatctgta aatattctat tattcaataa
      961 atgggataca cgcaagattg aagtaaacga tcttgggttg caaaaggtaa tttctttaaa
     1021 gccggcaacc gttatcccga taacctttgg aaggcatgag catcaaagat tgaaaaaggc
     1081 cgaagttaac ataattgaaa gattagctaa taagttgatg cattttggga aaaaatatgc
     1141 aaagaataca ggaagaatgg gaggcaaaaa ggggaaggca atgagtacta taagaacagc
     1201 acttgatatc atttatctgg aaacagcaaa gaatccagta gaagtcttga taagagcaat
     1261 ccagaacgtc tctcctaacg aggatacaac ccgtatagtc tatggtggtg tagtttatca
     1321 tgtttccgta gatgtcgcac ctctacgtag agtagacctg gcgctgcgtt tcatagctga
     1381 gggcgtgaaa gaatcgacat attctagccc ccaaactatc gaagaagctt tggcaaagga
     1441 actaatctcg gcatcaaaca atgatatggc aagccatgca gtaaagaaaa agaatgagca
     1501 ggagcgcata gccatggcct ctcggtagta tacttttcca ttttattgta cgtcagtaga
     1561 atttcttgtc aatcgttaga gtttcgtgga attgtttatt tgaaccaagt cttgcttctt
     1621 tagctggaat atttattttc agttatttta
//
LOCUS       DATLQL010000113         1219 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_204223, whole genome shotgun sequence.
ACCESSION   DATLQL010000113 DATLQL010000000
VERSION     DATLQL010000113.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1219)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1219)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1219
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_204223"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..261)
                     /locus_tag="VNB68_01195"
     CDS             complement(<1..261)
                     /locus_tag="VNB68_01195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35997.1"
                     /translation="MTDQFAFLGDRCKAAIAAMALGVLLLLPASLGFGGTIIEAYGQF
                     NLPLLEEEEPDTGADTGDTTTTPTTPTTPTTPTTPTTPTTPTT"
     gene            complement(402..554)
                     /locus_tag="VNB68_01200"
     CDS             complement(402..554)
                     /locus_tag="VNB68_01200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD35998.1"
                     /translation="MCLQRLKEAIDDQRTSKEEEIFSENEEKIRYYAPLSSTDAKSTS
                     PFTKQQ"
BASE COUNT          336 a          240 c          219 g          424 t
ORIGIN      
        1 tgtagtcggt gtagtcggtg tagtcggtgt agtcggtgta gtcggtgtag tcggtgtagt
       61 cggtgtagtc gtagtatctc ccgtatcagc tcccgtatca ggttcctctt cttctagaag
      121 aggaagattg aactgtccgt aggcttctat gattgttccc ccaaacccaa gactagctgg
      181 caataataag agaacaccca aggccatagc agcaattgct gccttgcatc tgtctcctaa
      241 aaaagcaaat tgatctgtca ttgttacgac aaacctagaa tcgcttattt tgatttcgat
      301 aaattactct agtaatattc cttagtatgt atttataata agatactaca cttatactat
      361 tcgtcctatg acctttattc gtattggata aagttcattt cctattgttg cttcgtaaat
      421 ggagaggtac tctttgcatc cgtactgctg agaggagcat aatacctaat cttttcttca
      481 ttttctgaaa atatttcttc ctccttggaa gttctttgat cgtctattgc ttccttcaat
      541 ctttgcaggc acatttctac tattgtctac tatgtggctg actcgactat atccattagc
      601 ttttcttata ttaataatgc attattagaa tagtctgatg tttacctttc tatttgcagt
      661 ttagagccgc agaaaaacat aagcggatgg acggatgacc gatatctgta gttattacat
      721 agatttttga ttactgtaga taataggaca tggtgtgatt ccactgctaa ttctttatgg
      781 ctattccctt ggaggcttct gctatatgct acttgtattc ccactaatag actcctcttg
      841 acattttcct ttaatgcaca agctcataat tgtcatcacc ctaattctgt agtctaggtt
      901 tttgccaatg gctcagttgt gtcaataatc cttcttgctt ggtctctatt atttcaatac
      961 ttcagctcct tctgtcagta gtagtaactg tgtgtgcaac aaatgaaatt taccaagaag
     1021 agaaaatata gcatcggcat gtacctcaaa tacagcaata actttttttt cacctcaaga
     1081 ggtgaaatat atttgaacaa aaactatcaa gataattgat caatccgtaa attaacaacg
     1141 cgattctatc ttgggaagag agatatatat acatgcatcc tgacgaccta aaagcagtat
     1201 ggatctgcca tgaatgtca
//
LOCUS       DATLQL010000114         1671 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_383027, whole genome shotgun sequence.
ACCESSION   DATLQL010000114 DATLQL010000000
VERSION     DATLQL010000114.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1671)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1671)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1671
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_383027"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            208..1140
                     /locus_tag="VNB68_01205"
     CDS             208..1140
                     /locus_tag="VNB68_01205"
                     /inference="COORDINATES: protein motif:HMM:NF018378.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glucuronyl C5-epimerase family protein"
                     /protein_id="HVD35999.1"
                     /translation="MAIIIKTALLTSLSIILLTNSTTPMVKPIDVFAEADDSVDAAAA
                     QVYISDDNGDNKDGGGGDAADSKTVNNNEEKKTGWSDIEYLRDANNNTMVDYKNLFGL
                     NIGKVYNPNFVDNADWFLSSSNYEDHVDYYLIPYNYNWHFYSNISAPWYGCEAQSKAM
                     LVTAKKYNETGDSKYLEFSKKVFNGLNSPVLNHHGWLLGVVTEKNNGKILNSQLFCVA
                     NLMTYYEYTGDERALKLFKKGVDVLEKNINDLSEDCGSYYSLSKDRFVSHQQHPEYMK
                     MLERLYLMTGSNTLKNTLDKWQHDYLFPCYSRAS"
     gene            complement(1430..>1671)
                     /locus_tag="VNB68_01210"
     CDS             complement(1430..>1671)
                     /locus_tag="VNB68_01210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36000.1"
                     /translation="ENTPKTKERIFLLCDQCLWTVTCLNKKYLEELLDISDTEYSCPS
                     CKQDELSSFPITENDSFRYNYSKSRGLEITFGIEK"
BASE COUNT          567 a          299 c          353 g          452 t
ORIGIN      
        1 atatattact acatgtgcaa agtgtaagag tccttactgg aacaggccga ggaaagggaa
       61 agagaagcag aagaaatgac atataaaaat aaagatctca gcgttgatga aaagcaaata
      121 ttattggtat gttattggaa aaatcgagac aaactgttct aaaaggaatt gcgacaacaa
      181 agaagaaata tctccagaag tatcattatg gcaataataa ttaaaacagc gctcttgact
      241 tcactttcca taatacttct cactaactca acaactccaa tggtgaaacc aattgatgta
      301 ttcgcggaag cagatgattc tgttgatgct gctgctgctc aggtctatat ctcagatgat
      361 aatggcgaca acaaggatgg cggaggcggc gatgcggctg actcgaaaac agtcaacaac
      421 aatgaagaga agaaaacagg ctggtctgat attgaatatc ttagggatgc aaacaataac
      481 acgatggtgg attacaaaaa cctctttggt ttgaatatag gcaaagtcta taatcctaac
      541 tttgtcgaca atgctgactg gttccttagc agcagcaact atgaagacca tgtagattac
      601 tatctgatac catacaacta caattggcac ttttactcta acatatctgc gccttggtat
      661 ggctgtgaag cacagagtaa ggcgatgctt gtgaccgcta aaaaatacaa tgaaacaggg
      721 gattccaaat acctagaatt ttccaaaaaa gtattcaacg gcttaaattc tcctgttcta
      781 aatcatcatg gctggctttt gggagtagtg actgaaaaaa acaatggtaa aatactgaac
      841 agtcagctgt tttgcgttgc gaaccttatg acttactacg aatataccgg ggacgagcga
      901 gcgctgaaac tattcaaaaa gggtgtagat gtactggaga aaaatatcaa cgacctatcg
      961 gaagattgtg gaagctacta ttctttgtct aaggataggt ttgtatcgca ccagcagcat
     1021 cctgaataca tgaagatgct ggaaaggttg tatttgatga cgggaagcaa cacgctgaaa
     1081 aatacgctgg acaaatggca gcatgactat ctgtttcctt gttattctcg agcttcttga
     1141 gcaaccattc taacaactag aatgaatccc actgattcct aaaatgaatc cgatatgttt
     1201 gtagaaaatc tatagaaaac tgtgatggac ctcaaaaagc acgaggaggt aaaagtcaag
     1261 cgctgaagaa gtcgctcaca aagcggcgtg gactgcggtt aagcaaaaat acaagaaaca
     1321 agacgatgaa tggtaagtaa ggaatgaggc aattatgatt tgcagatgtt aatttaaaag
     1381 gcatttgaat ttcagtcagg ctgacttgat atacagccag acctttgggt catttttcga
     1441 ttccaaacgt tatctcaagt cctctgctct tggaataatt atatctgaat gagtcgtttt
     1501 cagtgattgg aaaacttgat aattcgtctt gcttacacga agggcaacta tactcagtat
     1561 ccgaaatatc taatagttct tccaggtatt tcttgttaag acaagttact gtccatagac
     1621 actggtcaca taacaggaat attctttctt tagtcttcgg agtgttttca a
//
LOCUS       DATLQL010000115         2817 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_915069, whole genome shotgun sequence.
ACCESSION   DATLQL010000115 DATLQL010000000
VERSION     DATLQL010000115.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2817)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2817)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2817
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_915069"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..206)
                     /locus_tag="VNB68_01215"
     CDS             complement(<1..206)
                     /locus_tag="VNB68_01215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36001.1"
                     /translation="MLIGCPAASSKHWIQSSGIQEAQTPSNSHFKIKLKTLCLGGYKR
                     NIYCMNACFGRRGKYVLSFHASNE"
     gene            974..1222
                     /locus_tag="VNB68_01220"
     CDS             974..1222
                     /locus_tag="VNB68_01220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36002.1"
                     /translation="MNVAEKENQFEMEAKTFNHKKKRNIIYSFVDSYHSLCLDKKEII
                     LAQIQACERLLKYVTDENDMSILGEEVAELRLALDLMD"
     gene            complement(1274..2524)
                     /locus_tag="VNB68_01225"
     CDS             complement(1274..2524)
                     /locus_tag="VNB68_01225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008519 - ammonium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0072488 - ammonium transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HVD36003.1"
                     /translation="MPIDTGNTAWMLVASSLVLLMIPALGMFEAGLLRKKNTVSIFMQ
                     IFFGLALLSVMWFIFGFSLTFGPDTAGLVGNLDWTFLKGVPFNDSLANYAPTIPGVLF
                     AKFEMMFAVITPLLLTGAIAERMKFSAFIIFIAVWSFLIYYPLVHWIWGGGWLGKLGV
                     VDFAGGIVIHTSAGMGALAAALVLGRRLNYGPAIMVPHSIPLAVLGSALLWLGWFGFN
                     AGSALASGGVAGNTVINTHMASSISALIWVGLSWLRTGKPSIIAAINGAIAGLAGITP
                     ASGYVSVEHAFLIGIAVGIASYLGVIFLKDRLKIDDALDVSSVHGIAGIIGSLAIGIF
                     AASIINPMGPNGLLYGNPSQLLIQAIGVGVAGVMGFFGTYVILKVIDVLIGIRVSAKV
                     EQEGLDIAEHAERAYSDEDEFERD"
     gene            2609..>2817
                     /locus_tag="VNB68_01230"
     CDS             2609..>2817
                     /locus_tag="VNB68_01230"
                     /inference="COORDINATES: protein motif:HMM:NF012753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030234 - enzyme regulator activity
                     [Evidence IEA];
                     GO_process: GO:0006808 - regulation of nitrogen
                     utilization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HVD36004.1"
                     /translation="MNFLIKAEIVIPQNDVQAIDEALKQIQVGGITVFKVKGRGKSIG
                     PSIHASKGTEIFTPEFNDKYILQVVV"
BASE COUNT          915 a          571 c          518 g          813 t
ORIGIN      
        1 ctctcatttg atgcatgaaa ggataagaca tatttgcccc tgcggccaaa gcaagcattc
       61 atacaataaa tattcctctt ataacctcct aaacatagag tttttagttt aatcttgaaa
      121 tgagaattac ttggtgtttg ggcctcttga ataccacttg attgaatcca atgttttgaa
      181 gaagcggcag gacatccaat aagcatacat ggattcagcc cgcatatttg acctagtctt
      241 atcgcggtta tttattgtga agtgctgctg attattttga ttacgcactc tttattagta
      301 aactctttac atttgtagct atggcgccat tgaccattca tgaaatattc cagatgccta
      361 atattgtccc tatttgttgt gatacgctca tgaccattct tggcagtcgt agatcgtgcc
      421 attatttcaa ctcttcttct catggtaaac aaataaggtt cgaaaccatt caataagaac
      481 gtttagtctc aatcgatcca tgtttcaaat tatccattat ttgttcaact agtaaaataa
      541 aaaccaaaaa tactaacagc aattccataa tcatttatgg ttatggtgga aatggtgttt
      601 tatgttggta tcaaatatat tcttattagt atattttcga aaggaatgtt aactttagac
      661 ccgatagttg gtagataatc actatagtct gcatatatct atagaaatac ttctagcaat
      721 actaatagac caattcaaac aataactacc atgcataata agggatcgtg tagagtctgt
      781 cggtcctatt ttatacccac atcaggttgt attgcttgta cagaaaatga gtcatggata
      841 agtaacaagt gccacaaatt gaaggcgaga aacattcgca caacttttgt agaataggat
      901 acataaagga agaaggtaat agtagttcaa ctatggtaat aaattcgaat gaaattgagg
      961 ttttagggaa tctatgaacg tagcagaaaa agagaatcaa tttgaaatgg aagcaaaaac
     1021 ttttaatcac aaaaagaaaa gaaatatcat ctactcgttt gtagattctt atcatagtct
     1081 atgtcttgat aagaaagaaa taatactagc acaaatacag gcatgcgaga gactgttaaa
     1141 atatgtcacg gatgaaaacg acatgagcat tcttggtgaa gaggttgccg aattgagatt
     1201 agccctagat cttatggatt agtaacgcgc acctacagat tcgattttta atgctgttgc
     1261 gcttaaggta aatctaatcc ctttcaaact catcttcatc actgtatgca cgttcagcat
     1321 gttctgctat gtccagacct tcctgctcta ccttggccga cactcttatg cctatcaaaa
     1381 catctataac tttcaggatt acgtaagtgc caaaaaagcc cataactcct gcgactccaa
     1441 cgccaatggc ttgaattaaa agctgactgg gattaccata taacaatcca ttggggccca
     1501 tcggattgat gatcgaagct gcaaaaattc caatagcaag tgacccgata attcctgcaa
     1561 tcccgtgtac tgaacttacg tctagtgcgt catcaatttt taatctgtct tttaggaaga
     1621 ttaccccaag ataggaggca atacctactg ctattcctat gaggaatgca tgctcaacgc
     1681 ttacatatcc cgaagcagga gttatccctg caagtcctgc tatggcacca tttatcgctg
     1741 cgatgatgct tggtttacct gttctcaacc acgataaccc cacccatatc aaagcggata
     1801 ttgatgaagc catatgagta ttaattacag tatttccagc aacaccacct gaagccaatg
     1861 cacttccagc attgaatcca aaccatccca accataatag ggcggatcct agtaccgcca
     1921 gaggaatact atgtggaacc atgatggctg ggccatagtt caatcttctg cctaggacta
     1981 gagccgcggc aagtgcgccc attcctgcac tagtatgaat tacaattccc ccagcaaaat
     2041 ccacaacccc gagtttgccc agccatcctc caccccagat ccagtgtact aatggatagt
     2101 atattagaaa actccagaca gctatgaata taataaacgc gctaaatttc attcgctcag
     2161 ctatggcacc agttagtaac aatggagtaa ttactgcgaa catcatctcg aattttgcaa
     2221 atagtactcc tgggattgta ggagcatagt tagctaaaga atcattaaat ggaactcctt
     2281 ttaggaatgt ccagtcaaga ttacctacaa gacctgcagt atcggggcca aaggttaagc
     2341 tgaatccaaa gataaaccac atgacactca aaagggctaa tccaaaaaag atctgcatga
     2401 aaattgaaac tgtattcttt tttctgagca atcctgcttc aaacattcca agggccggaa
     2461 tcattagtag tactagactc gaagctacga gcatccaagc tgtattacca gtgtctattg
     2521 gcaatagttt ttgtgtattt tgtaccgcta atataaaaag atgtgcatct tcaaaccata
     2581 gaaaatgttt ttaaggcaag aatatgacat gaatttcttg attaaggcag agatagtaat
     2641 tccgcaaaac gatgtacaag cgatagacga agcattaaaa caaattcaag ttggtgggat
     2701 aactgtcttt aaagtgaaag ggagaggcaa gagcatcggc ccttcaattc atgcttccaa
     2761 gggtactgag atattcactc ctgaattcaa tgacaagtac attttgcagg tggttgt
//
LOCUS       DATLQL010000116         1025 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1981888, whole genome shotgun sequence.
ACCESSION   DATLQL010000116 DATLQL010000000
VERSION     DATLQL010000116.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1025)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1025
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1981888"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..378
                     /locus_tag="VNB68_01235"
     CDS             <1..378
                     /locus_tag="VNB68_01235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HVD36005.1"
                     /translation="AMTGDEPFEYYGTSRSWSPGWVNRYTTESIENLMSFNAVPHAHH
                     VAPTPLLIIHGKNDKYCLPKFAQEAYDKAGEPKEIMWVDAPNHIDLYDVEEHIGPAIN
                     KTVEWFNRYLGDNSRLMEKVYGD"
     gene            644..>1025
                     /locus_tag="VNB68_01240"
     CDS             644..>1025
                     /locus_tag="VNB68_01240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36006.1"
                     /translation="MNKKKLMRGVAVLAVTTLLGTATIVVTPLNDAYAPSGSRGAPVF
                     ITGDNIYVAWWTNNTANNNEEVNFRASVDGGETFGDKINLSNTTDKDSTNVTIDADAD
                     SVVVTWWESNQTSETPVMRVSNDNG"
BASE COUNT          338 a          189 c          218 g          280 t
ORIGIN      
        1 gcaatgacgg gggatgaacc ttttgaatat tatggaactt cacgttcatg gagccctgga
       61 tgggtcaacc gctatacgac tgagtccatt gaaaatttga tgtcatttaa cgcggttcct
      121 catgcccatc atgttgcacc cactccacta ctaatcatcc acggaaaaaa cgacaaatac
      181 tgcctaccaa aatttgcgca ggaagcatac gacaaagcag gcgaaccaaa agaaatcatg
      241 tgggtagatg ctcctaatca cattgatctt tatgatgtcg aagaacatat tggacctgct
      301 attaacaaga cagttgaatg gttcaacaga tatttaggag ataattctag actgatggag
      361 aaggtttatg gagactagaa ctcctgtcaa gcccattatg agtattatca atttgtgggt
      421 gattgatcct tcgagtccaa atttcaaagt tttttctgcc gagtccctct gggcccgcct
      481 aaaataagaa atcgtttaaa aaatggaccc aatgaaaatg agtctaaatt ttgaatcttc
      541 ttaaccggaa cgctggggat tcttcttttt gaattaataa caatccacaa ataaacttag
      601 aaatgattgc ttatatattc tgtgattctt tagaataatt ctcatgaaca aaaaaaaatt
      661 gatgagaggt gttgctgttc ttgcagtgac aaccctttta ggaacagcga cgattgttgt
      721 aacacctcta aacgatgcat atgctccttc cggcagtaga ggtgctcctg tgtttatcac
      781 aggtgacaac atatatgtag catggtggac taacaataca gccaacaata acgaagaggt
      841 aaactttaga gcatctgttg acggagggga aacttttgga gacaagatta acttgagtaa
      901 tactactgat aaagattcaa cgaatgtaac aatcgacgca gatgcagata gcgtagtagt
      961 gacatggtgg gagtcaaatc agacaagtga gacaccagtt atgagagtga gtaatgataa
     1021 tggac
//
LOCUS       DATLQL010000117         2240 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1802174, whole genome shotgun sequence.
ACCESSION   DATLQL010000117 DATLQL010000000
VERSION     DATLQL010000117.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2240)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2240)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2240
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1802174"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1205)
                     /gene="aspS"
                     /locus_tag="VNB68_01245"
     CDS             complement(<1..1205)
                     /gene="aspS"
                     /locus_tag="VNB68_01245"
                     /EC_number="6.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004815 - aspartate-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006422 - aspartyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA(Asn) ligase"
                     /protein_id="HVD36007.1"
                     /translation="MADLLEEDLGTWRRTHYSVDINPTLNESEIIIMGWVSSIRDHGN
                     IKFLTINDRFGQIQIALKKKDCSKTVLEKTEQIREHTSIAIKGKVKSEIKAPNGAEIL
                     PVEIKILSLARKASPFLIQSKKSVGIDTRLDLRALDLRRPFLQSLFNIRNTIMDSCRE
                     FLRKDGFMEVNTPKIIATATEGGAALFPIFYYEREAFLAQSPQLYKEQLTMAFENVFE
                     IGPIFRAEPSRTNRHLSEATSIDVEKAFADYNDVMNLLERMLSYVVGKIQENNKPHLE
                     YLNITLPDVALPFRRYRYSELIEMLQKAGESIKWGDDLAFQKLQKIQDAKVDSFYFIF
                     DWPAAIKPFYVKPRSTVANECESFDLMYKSVEVSSGSTRVSRKEELVERMKKQGLNIG
                     AFDYHLKVF"
     gene            1645..>2240
                     /locus_tag="VNB68_01250"
     CDS             1645..>2240
                     /locus_tag="VNB68_01250"
                     /inference="COORDINATES: protein motif:HMM:NF014544.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HYR domain-containing protein"
                     /protein_id="HVD36008.1"
                     /translation="MGLSIYSNPSNVFAQSQSGSTNSTDNKPPILSVPADSIVEATNS
                     SGRVIIYKVLGSDLVDGTIDVVCGPLSGSMFPIGKTKVSCKGADKAGNVGTASFSIKV
                     QDTTPPDTNIDFARAGILGDILPNTNTSSSDISFKLSGSDNVGISHFECKLDEAKWIS
                     IVYDENTMNDYGCIYKNIPSGVHTVLARSVDKAGNIDP"
BASE COUNT          647 a          437 c          417 g          739 t
ORIGIN      
        1 tcaaatacct ttagatgata atcaaatgca cctatattta gcccttgttt cttcattctt
       61 tccaccaatt cttcctttcg actaactctt gtacttcctg aagatacttc aacagatttg
      121 tacatcagat caaaagattc acattcgttt gctactgttg atctcggctt tacataaaat
      181 ggcttgattg cagcaggcca atcaaaaatg aagtagaagc tgtccacttt tgcatcttga
      241 attttctgca atttttgaaa agcaagatca tctccccatt ttatagattc gcctgccttt
      301 tgaagcattt ctatcaattc agaatatcga tatcttctga agggcaaggc cacatcaggc
      361 agagtaatat tcagatattc gagatgtggt ttgttgttct cttgtatttt accgacaaca
      421 tatgacagca ttcgttctaa caagttcatc acatcattgt aatctgcaaa agctttttca
      481 acatctatgg aagtggcctc tgaaaggtgt ctgttcgtcc gagagggttc tgctctgaat
      541 attgggccta tttcaaatac attctcaaag gccattgtaa gctgctcttt gtaaagttgt
      601 gggctctgag ccaagaatgc ctctctctca taatagaata tcggaaacag tgctgcccct
      661 ccttctgtag ctgtagcaat tatttttggg gtattaactt ccatgaaccc gtcttttctt
      721 aggaactctc tgcatgaatc cataatggta tttcttatgt taaatagaga ttgaagaaac
      781 ggccgtcgca gatctagagc tcgaaggtct aatcttgtat cgatacccac ggacttctta
      841 ctttgaatca gaaatggaga agcttttcta gcaagcgaga gtattttaat ttcaacaggc
      901 aatatttcag ccccgttagg agctttaatt tctgatttaa ctttgccttt aattgctata
      961 gaagtatgct ctcttatttg ctcggttttt tccaatacag ttttggaaca atcctttttc
     1021 tttagtgcta tttgaatctg accaaatcta tcattaattg tgagaaattt tatgttacca
     1081 tgatctcgaa tagacgacac ccatcccatt atgatgattt cactttcatt caaagtggga
     1141 ttgatgtcaa ctgaatagtg tgttctcctc cacgtgccta agtcttcttc taacaaatca
     1201 gccaaatgtg cagaccttaa tagtttggac tgtactgaac aggttaattt aacctttaag
     1261 ataagaagat tcaaccatta atctgatgtt gtttttttat cctcatttgg acttgctgtg
     1321 atttcatgcg tccacaagat gagagggaag agggccgcag ttttataaca aaaactacgt
     1381 ttgtgcagta gtttttggag caggaataaa acgcgcagcc ttctatatcg gaatcgtaag
     1441 ttagatagca tttactgtga gatgtaacta gtagaattat agggatgata agctattaca
     1501 attagaattg aaatttatcc ctagatcttc gtgattaaat tgaatatgat atgcgatgcc
     1561 taagttctta tatacaatat ttttaagctc tttctattgt cgggatttac ctcatcgttt
     1621 ataatattag tattaatcag ctctttgggt ttatcaatat atagcaaccc ttcaaatgta
     1681 tttgcacagt ctcagagcgg ttctacaaat tcaacagaca ataaaccccc catattgagt
     1741 gttcccgcgg attctattgt agaggccacc aactcgtcag gaagagtaat catatacaaa
     1801 gtactcggat ctgatcttgt tgatgggaca atagatgttg tttgcggccc actttcagga
     1861 tcgatgtttc ccatcggaaa gaccaaagta tcgtgcaagg gtgctgacaa ggcgggtaat
     1921 gtagggacgg catcattcag tattaaagtt caggacacaa caccgcctga tactaatatc
     1981 gattttgcac gtgctggcat ccttggcgat atattaccca acacaaatac ctcatccagc
     2041 gatattagct tcaagttatc agggtctgat aacgttggca taagccactt tgaatgtaag
     2101 ctagacgagg ctaaatggat ttccattgtt tacgatgaaa atacaatgaa tgattatgga
     2161 tgtatctaca aaaacattcc ttctggtgtt cataccgtac ttgcaagaag tgtggacaaa
     2221 gccggaaata tagatccgat
//
LOCUS       DATLQL010000118         1788 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1449303, whole genome shotgun sequence.
ACCESSION   DATLQL010000118 DATLQL010000000
VERSION     DATLQL010000118.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1788)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1788)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1788
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1449303"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1765)
                     /locus_tag="VNB68_01255"
     CDS             complement(<1..1765)
                     /locus_tag="VNB68_01255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36009.1"
                     /translation="MKGDEMNIKAEGATTRVIYGMQNVLEAETGLFQRATDRIDTCMN
                     YTRPPLAISLPQITNAFLDAKKRGVKLRYITEITEDNLSYCKELMLLVDDLRHLDPIR
                     NNFMMSEREYLAPLVLDDRETISSELVYSNVIQVVRQGQNTFDKLWDIAVPAEQKIRE
                     IEERKVKPKTEVLYGAENALARGAKFMQSVRERMDICFDSRGASVVTEVDTYKNGYVE
                     IRNKGGKIRAFTEITKDNIHYCKELSKLVDELRHFDGIKGGIAVSETEYMATTVLQEA
                     KPLPQVIYSNVKEIVEQGQYIFDTLWSKTIPAEQKIKEIDEGIIPFETKIIDNRDDIA
                     SQIIHLAENSAGLSILSNYGGMQLIYTNFLDLYKKVLDRQKSGKGRGIKWVMTIDKES
                     VELVKKFLKLGMKIRHVKHLTPINFAVGEHELNATMEQMREGKMIQNLLTSNEPVYIK
                     LFTSMFEQMWRDGLDAEYRIKDLEEGIDEAEIEIIQNPEHVIDRSWEAIKSAKKDLDS
                     LFSSANALRRQIAMGALDLLKEASEAHNVKVRLLIPSSRDINELIHEVRSAVPKIDIR
                     ILDASLETRITILVVDKKKCLV"
BASE COUNT          438 a          404 c          307 g          639 t
ORIGIN      
        1 tgacaagaca tttctttttg tccactacca gtattgtgat cctggtttcg agacttgcat
       61 ctaatattct tatgtctatt ttcggaacgg cggatctcac ctcgtgtatt agttcattta
      121 tgtcacgaga tgatggaatt aacaatctaa ctttaacatt gtgagcctcc gacgcttcct
      181 tcagtagatc cagggcgccc attgcaattt gtcgtcggag tgcattggca gaagagaaga
      241 gcgaatctaa gtcttttttt gctgatttta ttgcttccca actacgatcg atcacatgtt
      301 caggattttg aatgatctct atctctgctt cgtcaatgcc ttcttctaaa tctttaatcc
      361 ggtattcagc atcaagtcca tctcgccaca tctgttcaaa cattgaagta aaaagcttga
      421 tataaacagg ttcgttactt gttaggagat tttgaatcat cttgccctcg cgcatttgtt
      481 ccatggtagc gttaagctca tgctcaccaa cagcaaaatt aataggagtt agatgtttaa
      541 cgtgtcttat cttcattccc agttttagaa attttttcac caattccacg ctctctttgt
      601 ctatagtcat aacccatttg atccctcttc ccttgccact cttttgccta tcaagaactt
      661 ttttatacag atccaaaaag ttagtgtaga ttaattgcat tcctccatag tttgatagaa
      721 ttgataaccc tgcagaattc tctgcaaggt gtataatctg gcttgctatg tcatcacgat
      781 tatctattat cttagtttca aacgggataa ttccttcatc tatctctttt attttctgtt
      841 cagcaggtat ggttttactc cacaaagtat cgaagatata ctgtccttgt tcgactattt
      901 ctttcacgtt actgtaaata acttggggaa gaggctttgc ttcttgcaat actgtggtgg
      961 ccatatattc tgtttcactt actgcaatac caccctttat gccatcaaaa tgacggagct
     1021 cgtcaactag cttcgaaagc tctttacaat aatgaatatt atctttcgta atttctgtaa
     1081 aggctcttat tttgcctccc ttgtttctga tttcgacgta cccgttcttg taagtatcaa
     1141 cttcggtaac tactgacgcc cctctactgt caaaacatat atccattctt tctctcacgc
     1201 tctgcatgaa ctttgctcct ctggctaggg cgttttcagc tccataaagt acttcagttt
     1261 ttggcttgac ttttctttct tctatttctc ttattttttg ttctgctgga acagctatgt
     1321 cccacagttt atcaaatgta ttttgtcctt gtcgtactac ttggatcaca ttactataaa
     1381 caagctctga tgatatagtt tccctatcgt caagaaccaa cggagctagg tattcccttt
     1441 cactcatcat gaagttgttc ctgatcggat cgaggtgacg aagatcatct acaagaagca
     1501 ttaactcctt acagtaagat agattatcct cagtaatttc ggtgatgtac ctcagtttta
     1561 cgcctctctt cttggcgtct agaaaggcgt tcgtaatttg gggtagagaa atcgctagcg
     1621 gaggcctggt gtaattcatg catgtatcaa ttctgtctgt agctctttgg aatagacccg
     1681 tttcagcctc gagtacattc tgcattccgt aaatgactcg ggtagtggct ccctccgcct
     1741 tgatattcat ttcatcacct ttcaaaggta aacagtaccc cccattta
//
LOCUS       DATLQL010000119         1025 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_384284, whole genome shotgun sequence.
ACCESSION   DATLQL010000119 DATLQL010000000
VERSION     DATLQL010000119.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1025)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1025
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_384284"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..735
                     /locus_tag="VNB68_01260"
     CDS             <1..735
                     /locus_tag="VNB68_01260"
                     /inference="COORDINATES: protein motif:HMM:NF013539.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0097367 - carbohydrate derivative binding
                     [Evidence IEA];
                     GO_process: GO:1901135 - carbohydrate derivative metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HVD36010.1"
                     /translation="VFFVSVSGNTTANIRAANAMNTRDVPITAITMDSNSPLAKECND
                     VIEIDVPRSPVVTSGTLTFTASTIICLSLISAITNTAFIPKLYEKCKRNYRIYDDISF
                     TGQVHVILGNDLLYPCAIYGKLKINEIFGLPSIAYSLDEFFHASLFGTRVTDNILVLE
                     KNEITQKRNENFVSELLSKVGLKNVSLSCGSRSVLDTIFTSIFLQQIIFVNQAKKMGI
                     TECSFLKNKQYLSISSKLIYGHRYKR"
BASE COUNT          336 a          201 c          188 g          300 t
ORIGIN      
        1 gtcttttttg tttccgtgtc aggtaacact actgcgaaca ttcgtgcagc aaatgcgatg
       61 aatactcgtg atgtacctat aacagccatc acaatggatt ccaatagtcc ccttgccaaa
      121 gaatgcaacg atgtgatcga gattgatgtt ccacgatcac ctgtggtaac gtcaggcact
      181 ctgacgttca cagcgtccac tatcatctgt ctttcgctaa tatcggctat tactaatact
      241 gcattcatcc ctaaacttta tgaaaagtgt aaaagaaatt atcggatata tgatgacatc
      301 agcttcacag ggcaggttca tgtcatctta ggaaatgatc ttctttatcc atgtgcaata
      361 tacggaaaat taaaaattaa tgaaattttt ggtttgcctt caattgcata ctctttagat
      421 gaattctttc acgcatccct ctttggtacc cgggtaacag ataacatatt agtgctagaa
      481 aagaacgaaa ttacacaaaa aagaaatgag aattttgtct ccgaattact atcaaaagtt
      541 ggattaaaga atgtgtcact gagttgtgga agtaggtcgg tcctagatac aatctttacg
      601 tctatttttc ttcaacaaat tatctttgtt aaccaggcta aaaaaatggg tataacagaa
      661 tgcagtttct tgaagaacaa acaatatctc tcgattagct caaagttgat atatggccat
      721 cgttacaagc gctaggacac caacaaataa aacaatggca aagccaattt tgtcgtaatt
      781 atgaacttcg acgtgctcca aaaaattatt ccaaatgtat ttatcttcga ggcgaccatt
      841 ctgttttaat gggaagattc tttgggagaa cgagtaacaa gataacagag tctcccagta
      901 cctcctccga cactgaagca aagcagaaat ccgattatcg agagatacag tcaagggatc
      961 tttacaacaa aggtgtaaat catatgtcca atgagaagct attagatgcc attcgcagct
     1021 tcgag
//
LOCUS       DATLQL010000120         1308 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_384312, whole genome shotgun sequence.
ACCESSION   DATLQL010000120 DATLQL010000000
VERSION     DATLQL010000120.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1308)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1308)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1308
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_384312"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..306)
                     /locus_tag="VNB68_01265"
     CDS             complement(<1..306)
                     /locus_tag="VNB68_01265"
                     /inference="COORDINATES: protein motif:HMM:NF014342.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHHA1 domain-containing protein"
                     /protein_id="HVD36011.1"
                     /translation="MGEEYFIAVGERSIEADPLLIFIALVMNKNGIRVIVFVGSQAQK
                     TIGAGRIAKEISAQLGGSGGGNDRFGQGGVKLVDIIDKCLKNIEDTIINASSKNDKKE
                     "
     gene            complement(343..>1308)
                     /locus_tag="VNB68_01270"
     CDS             complement(343..>1308)
                     /locus_tag="VNB68_01270"
                     /inference="COORDINATES: protein motif:HMM:NF013570.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004813 - alanine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006419 - alanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase-related protein"
                     /protein_id="HVD36012.1"
                     /translation="KAVQEFKAFELVDKVRPTKLLYYEDESIREFNARVLKVVDNRYV
                     ILDQTAFYPRGGGQEPDGGEIEGVKVTDVVKHIDVVIHKIDFPHNKEIFVEGRQVRAT
                     VNDRRRNSITKHHSATHILNSSARNNLGSWVWQNSAFKDENYARLDITHHSALTREEI
                     ERIEKTANDVVRKNLPLTIKIYERGEAEQKYTFRIYKGGVVPSSNVRIVNIEGWDIEA
                     CGGTHVGKTGEIGLIKIVKSERIQDGVIRLEFVVGDSAIRFIQTQETYLNKIASVLGS
                     SKEKVTESLEKVIEDSDATKRRFRALLKKTSNIIADNITHKAKNL"
BASE COUNT          327 a          306 c          197 g          478 t
ORIGIN      
        1 ttcttttttg tcatttttgg aagacgcgtt aattatagtg tcttctatgt tcttcaaaca
       61 tttatcaata atatcaacta gcttcactcc tccttgtcca aacctgtcat ttcctccacc
      121 cgatccacca agctgagccg aaatttcttt ggcaattcgt cctgcgccta ttgttttctg
      181 tgcttgggat ccaacgaaga cgattactct tattccattc ttattcataa cgagagcaat
      241 aaagataagt aaaggatctg cttcaatgct tctttctcca actgcaataa aatattcttc
      301 tcccaaaaca tcatcttgag tactgtataa tctaatccct gtttacagat tctttgcttt
      361 atgtgtaata ttgtctgcaa ttatgttgga agtttttttc aacaatgctc taaatcttct
      421 ttttgtcgcg tctgaatctt caataacctt ttcaagagac tccgtcactt tttctttact
      481 tgagccaaga acactagcaa tcttatttag atatgtctct tgggtctgaa taaatcttat
      541 tgcactatct ccgactacaa attcaagtct tataactcca tcttggatcc tttctgattt
      601 cactattttt atgagtccga tctccccggt cttgcctaca tgagttcctc cacatgcttc
      661 gatatcccat ccctctatgt ttacaattct aacattactg gatggtacta ctccaccttt
      721 gtaaatcctg aaagtgtact tttgttcggc ttcacctctc tcataaatct ttatcgtaag
      781 aggaagattt ttcctaacca catcgttagc tgtcttctca atacgctcga tttcttccct
      841 ggtcaatgcg gagtggtgag ttatgtccag tctcgcataa ttttcatcct tgaaagcaga
      901 attctgccat acccatgaac ctaaattatt tcttgcagaa ctattcagga tatgagttgc
      961 actgtggtgt ttggttattg aatttctcct acgatcgttt acagttgctc gaacttgtct
     1021 gccttcaaca aaaatttctt tattgtgggg gaagtcaatt ttgtgaataa cgacatcgat
     1081 atgctttact acgtcagtca cttttactcc ttctatctct ccaccatcgg gctcttgtcc
     1141 accacctctt ggatagaacg ccgtctgatc cagaataacg taacgattgt ctacaacttt
     1201 gaggacccgc gcattaaatt cgcgtattga ttcatcttca taatacaaga gttttgtagg
     1261 tcgtactttg tcaacaagct caaacgcttt aaattcttgc actgcttt
//
LOCUS       DATLQL010000121         4580 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1982491, whole genome shotgun sequence.
ACCESSION   DATLQL010000121 DATLQL010000000
VERSION     DATLQL010000121.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4580)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4580)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4580
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1982491"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            13..147
                     /locus_tag="VNB68_01275"
     CDS             13..147
                     /locus_tag="VNB68_01275"
                     /inference="COORDINATES: protein motif:HMM:NF013935.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0046961 - proton-transporting ATPase
                     activity, rotational mechanism [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATP synthase subunit D"
                     /protein_id="HVD36013.1"
                     /translation="MIIPHYEEAISFIKATLEEREREEFVRLKKVKVVLDRKKALDQV
                     "
     gene            175..312
                     /locus_tag="VNB68_01280"
     CDS             175..312
                     /locus_tag="VNB68_01280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36014.1"
                     /translation="MGFDQISDFFGKSREKLKKEHDSMIAQIKEEISSIKRKALSKTQ
                     K"
     gene            700..1041
                     /locus_tag="VNB68_01285"
     CDS             700..1041
                     /locus_tag="VNB68_01285"
                     /inference="COORDINATES: protein motif:HMM:NF012365.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase subunit C"
                     /protein_id="HVD36015.1"
                     /translation="MNCHAYGQRYILIVLAILTIVFGSALAADLHAYAQNASEKAVVV
                     DSGSRLIGAGMAFGLAAAGSGIGLGFVGAAGLAAISDNPKMQSRVFIFVGMVESIAIY
                     GIVMMFIILGQ"
     gene            1469..3619
                     /locus_tag="VNB68_01290"
     CDS             1469..3619
                     /locus_tag="VNB68_01290"
                     /inference="COORDINATES: protein motif:HMM:NF013647.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0033179 - proton-transporting V-type
                     ATPase, V0 domain [Evidence IEA];
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_function: GO:0046961 - proton-transporting ATPase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATPase 116kDa subunit family protein"
                     /protein_id="HVD36016.1"
                     /translation="MPLAKLLKATVILPRIETQEAVSKLAGLEFFHSLPSSSEFSQPH
                     MDDLMLKAQRLFQDIDEVVRALGIPLETGVMSTMFKGAPRDKTDYAIRDIRGFIEDLE
                     KKSSIILEEPKSLIAMQNNIAKELEEYRNIATALKAAASFNLDLSSFKNLKRFFAETF
                     IVDSKDVAEIQRSLSDLTIYTNKLNDEKSSIVIIGSKEDLERIIKVLRSFNVHPIQIP
                     SHLPQNPSSAYAQSETKVKELEKKSEELSKKIEAIKKSSILPKILSLHEAAKAAKDVL
                     ETTRKPAGTRNFAMLQGYIPDDSKKKFNNLTRDYVSILEHIPVQNKQIEEEMVATGGW
                     TETDIKKERNAIPTLLSNKKYIKTFEVITQSQGTPGVGETDPTPIIAFVWPLFYGIMF
                     ADLGHGLLLFGLGMLLRQRGNGSIITWGTLLAASGAAAALAGLGTGEVFGFHVAEIAI
                     LKPVFEPLGSIVGVLNVSELSFDQVIKILKVSVAIGIVHMLMAHFLRLRKDIQDGNKN
                     FVLTHDIPTIIQFLAVVALILAAIGSGYDIIGMFGVTGQVHNEPVPWLTFIFGDWVTV
                     DVVAKAAPPIIIATVAVMIYGAKKEEEEAAKHGHDEGGGLMGIVIEVILVRIIEVLSN
                     VISYTRIGIMLLVHSALLVTVNTSYLHGGGIAVLIGGNIGIMLIEGLIVYIQTIRLHL
                     YEWFPKWYVGEGTEFKKLVPKMLYSNIIWKDQRS"
     gene            complement(3724..>4580)
                     /locus_tag="VNB68_01295"
     CDS             complement(3724..>4580)
                     /locus_tag="VNB68_01295"
                     /inference="COORDINATES: protein motif:HMM:NF014094.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="V-type ATPase subunit"
                     /protein_id="HVD36017.1"
                     /translation="EGALREYQVNLHSKMLSVTGGSSILSAYFLKYITWNLKIVLKGK
                     ALGKSYEELVPKVNLRAEELLGRRDIVVKALVSKNLDEAIGALAGSDVAEDAAKAAAI
                     YKDKRDLRVFDTYLDRTFFVHLGRGMNAESQSLDVKNIVSTDIDSYNILAVLRGKFWG
                     LAPNDISDLVVTTTSKVTRDTLMKMINTEKISEAIGELGNTVYKEIIPQTFTSDIDAI
                     MQLENGFEAIELKRVLSAFRSMFNLGIMVAALKLLMIEVRNLSAIASGVEQKVPTEAI
                     VSRLIIPT"
BASE COUNT         1451 a          876 c          935 g         1318 t
ORIGIN      
        1 gctttagaat tcgtgattat accgcattat gaggaggcca tttcttttat caaagccacg
       61 ctggaggaac gcgaacgtga agaatttgtg aggttgaaga aagttaaagt agtactggat
      121 aggaaaaagg cgttggacca agtttgaaag tcatcgcgat gatgttgttt taaaatgggt
      181 tttgaccaaa tttcagattt ctttggaaaa tcccgtgaaa aattaaaaaa agaacatgat
      241 tcaatgatag cccagataaa ggaagaaatt tcctctatta aaaggaaagc gctctcaaaa
      301 acacagaaat aaccatatcc tcatttaatg cgagttgaac ttccttgcga ggtgaacttc
      361 catgacaaac tcaagtactt gaaataccct taaatctttc tctttagaac ctctcattaa
      421 aaggactaaa atttgtccta gcctaacgaa gagcaattcc tatttccaaa atctaaattt
      481 ctagccagta gattatttcc atcattagcc gtattgtttt tcaaaaaaca aacagtaatt
      541 ctttatgttg cgattacgaa cacctactga tataatgtac caaataatta tgttcggtat
      601 tctcctcatg gcaattgggg atttgacctc gaccaatgac atttgaattg taccatgttt
      661 ggagttatag ttaaatatgg cattaagtgt cgaaccaata tgaactgtca tgcatatgga
      721 caaaggtaca tactaattgt attagccatt ttaacaattg tgttcggcag tgctttggcc
      781 gctgatcttc atgcatatgc tcaaaacgcc agtgaaaaag cagtcgtcgt cgattcaggt
      841 tcaaggttaa taggtgcagg aatggcattt ggattggcag cggctggatc aggtatcggt
      901 cttggattcg taggagctgc aggacttgct gcgatcagtg ataatccaaa aatgcagtct
      961 agagtgttta tctttgtcgg tatggtcgag tcaattgcaa tatacggtat cgttatgatg
     1021 tttattatct tgggacagta gaagaagcag aaaaatagaa caaccacgat tcagcgctat
     1081 tgaagcatat tcaagcaaac agtaatgatt ggccctctgc atgatcatac tatgatccag
     1141 tttttatgag agtttatact ctgcggttta aaggttttgc agaattatta ttatactgaa
     1201 agaatggcaa actcttattc aataagacgg cgatactcaa tactcttcag taaataatat
     1261 tgaaagctat gccttgatta cttggggtta attctcataa ttttgcttta aaataacagt
     1321 cattcttgtc aagctgatca tgccatttta tgataacttt tccatcatat caaagtgcaa
     1381 tccgatttct actgtcaagc taggtcagct ttatagatac taaaaggaaa gcttttaaag
     1441 agtctgaacc accagacaac ccaaagagat gccactggcc aaactactaa aggcgacagt
     1501 tatcttgcca agaatagaga cgcaggaagc agtgagcaag ttggcgggcc ttgaattttt
     1561 ccattcactc ccaagctcat cagagttttc acaaccccac atggacgatc ttatgctaaa
     1621 ggcccaaaga ttgttccagg atatagacga ggttgttaga gcattgggca tccctttgga
     1681 aacaggtgta atgtcaacta tgttcaaggg tgctcccagg gataaaaccg attacgccat
     1741 ccgcgatatt cgaggattca tagaagactt ggaaaagaaa agtagcataa tacttgaaga
     1801 accaaagtcc ttaattgcaa tgcagaataa tattgcgaaa gaactggagg aataccggaa
     1861 tattgctacg gctctcaagg ctgcagcgag cttcaatttg gacctttctt cttttaaaaa
     1921 tctcaaaagg tttttcgctg aaactttcat tgtcgattca aaagacgtag ctgaaattca
     1981 aagaagcctt agtgacttga caatttacac taataaactg aatgatgaaa aatcatcaat
     2041 tgtaatcata ggatcaaaag aagatttaga aagaattatc aaagtactcc gaagtttcaa
     2101 tgtacatccc atacaaattc catcacactt accacaaaat ccaagttctg cctacgccca
     2161 gagtgaaacc aaggtaaagg aactcgagaa aaagtcagag gaattatcaa agaaaattga
     2221 agcaataaag aaatcatcaa tattaccaaa gatcttgtct ctacacgagg ccgcaaaagc
     2281 agcaaaagat gtacttgaaa ctactagaaa acccgcaggg actaggaatt ttgcaatgct
     2341 tcaggggtat atacctgacg actcgaaaaa aaaattcaat aatctgacaa gagattatgt
     2401 atcaatacta gagcatatcc cggttcagaa taagcaaata gaggaggaga tggttgccac
     2461 gggtgggtgg acggagacgg atattaaaaa agaaaggaac gcaattccca ctcttctttc
     2521 taacaaaaaa tatataaaaa ctttcgaggt catcactcaa agtcagggta ctccaggagt
     2581 aggtgaaaca gatcctactc caatcatcgc atttgtctgg cccttgtttt atggtatcat
     2641 gttcgctgat ttgggacatg ggctacttct attcgggctt ggtatgctgt tgagacaaag
     2701 aggaaatggt tcgattataa cttggggaac gctactagct gcaagtggcg cagcggcagc
     2761 tctggcagga ttgggaacag gagaggtgtt tggatttcac gtagcagaga tagccatatt
     2821 gaaaccggtg tttgaaccat taggaagtat agttggtgtc ctaaatgtct cagaattgtc
     2881 attcgatcaa gtaattaaga tactgaaggt ttcagtagct atagggatcg ttcacatgct
     2941 aatggctcat ttcctcaggc ttagaaagga tatacaggat ggtaacaaga atttcgtatt
     3001 gacacacgat attcctacaa ttattcaatt tctagcagta gttgcgctca tactggctgc
     3061 tataggctca ggttatgaca ttattggaat gttcggggtt acgggccaag ttcacaatga
     3121 accagtacct tggctcactt tcatatttgg tgactgggtg accgtcgatg tagtagcaaa
     3181 ggcggctcct cctataatca tagctacagt agctgtaatg atatacggtg caaagaaaga
     3241 agaggaagag gctgctaaac acggtcatga tgaaggcggt ggcctcatgg gaattgtcat
     3301 agaagtcatt cttgtgagaa ttattgaggt actctctaac gtgattagct acactaggat
     3361 aggaatcatg ctcttagtac actcagcgtt acttgtaacc gtaaacacgt catatttaca
     3421 tggtgggggt atagcagttt tgattggtgg aaatatagga ataatgctga tcgagggatt
     3481 gattgtgtat attcagacca tcagattgca cctatacgaa tggtttccca aatggtacgt
     3541 gggagaagga actgaattca agaagctcgt tcctaaaatg ctctactcga acattatctg
     3601 gaaggatcaa cgatcctaag aacacaagat acaagataca taaaataaat aaagtatcac
     3661 cttctcctaa cactcctatc aagcacagtg atcaatgttt gccattcaag gcactgagca
     3721 cttttaagtt ggtataatta atcttgatac tatcgcctct gtaggaactt tttgttcgac
     3781 tccagaagct atagctgaca agtttctaac ttcaatcatc aatagtttta gcgctgcaac
     3841 cattatcccc agattgaaca tcgatctaaa tgcgctaagc actcttttta gttctatagc
     3901 ttcaaagcca ttttcaagct gcatgatcgc atctatgtca ctagtaaaag tttgtggaat
     3961 aatttcttta taaacggtat taccgagttc tcctatagct tcagagattt tttctgtatt
     4021 gatcatcttc attagagtat cccttgtaac cttagatgta gtagtgacca ctaggtcgct
     4081 gatatcgtta ggtgccaagc cccagaattt gcctcggagg actgcaagta tgttataaga
     4141 atcgatatcg gtggacacaa tattttttac gtctaaggac tgggactcgg cattcatccc
     4201 tcttcctaaa tgaacaaaga atgtgcgatc aagataagtg tcaaacactc tgagatcacg
     4261 cttgtcctta tatattgccg ctgcttttgc ggcgtcttcg gcaacgtcac ttccagctaa
     4321 cgcaccaatc gcttcgtcta aattctttga gactagcgcc ttgacgacaa tatctcgtct
     4381 gccaagtaac tcttcagctc tcaaatttac cttcggcacg agttcttcgt atgacttgcc
     4441 cagagctttg cctttcagaa ctattttcaa gttccaagta atatacttta gaaaatatgc
     4501 actaaggatc gatgatccac cagtaacact cagcatcttg gagtgtaaat tgacctgata
     4561 ttctcttaaa gctccctcaa
//
LOCUS       DATLQL010000122         1627 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_384463, whole genome shotgun sequence.
ACCESSION   DATLQL010000122 DATLQL010000000
VERSION     DATLQL010000122.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1627)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1627)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1627
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_384463"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..374
                     /locus_tag="VNB68_01300"
     CDS             <1..374
                     /locus_tag="VNB68_01300"
                     /inference="COORDINATES: protein motif:HMM:NF015670.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="exosome complex component Rrp42"
                     /protein_id="HVD36018.1"
                     /translation="LFDATSYAVVLALATSKIPVFEIIDENVIDTGKIQDPPINTIPV
                     SVTFARIGDSLVLDPCTEEEACMDARITLTTNSNGEYTAVQKGSNGFLTIEQVKSAAE
                     TAKIKGQELRLKFQELTTTGQ"
     gene            412..609
                     /locus_tag="VNB68_01305"
     CDS             412..609
                     /locus_tag="VNB68_01305"
                     /inference="COORDINATES: protein motif:HMM:NF013905.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L37"
                     /protein_id="HVD36019.1"
                     /translation="MKYGASVRKRYGVIYRTLKKKRRCPMCGSLHFGRIAVGIWHCPK
                     CKYKLAGGAYDVNLEKIRSSR"
     gene            584..847
                     /locus_tag="VNB68_01310"
     CDS             584..847
                     /locus_tag="VNB68_01310"
                     /inference="COORDINATES: protein motif:HMM:NF020899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTAG/PCC1 family protein"
                     /protein_id="HVD36020.1"
                     /translation="MKKYEAHAKIKIKIHSVPIDLSCKLAESMCAALKPEVKLVNCGE
                     KIEIRSLGAVVDIVIHAKDIVSIRAVVGSYMRLVQTAYGCLCA"
     gene            907..1311
                     /locus_tag="VNB68_01315"
     CDS             907..1311
                     /locus_tag="VNB68_01315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prefoldin subunit beta"
                     /protein_id="HVD36021.1"
                     /translation="MSEQEIPPWLREQLSRLQQLQQNLQAILMQKQQIEVESIETAKA
                     LEELMKLGEEDVVYKSAGPLLIKTKKNEALKELEEKKELSNTRLMVLGKQEARVKENL
                     KEVENKINEMIRIGQGQTGNDLGSGGTPISGS"
BASE COUNT          560 a          292 c          348 g          427 t
ORIGIN      
        1 atctttttga tgccacctcc tatgcagtgg tgttggcgtt agccacttcc aagatcccgg
       61 tatttgaaat catagatgaa aatgtgatcg acacaggaaa gattcaagat cctcctatca
      121 atacgatacc tgtttcagtt acatttgccc ggatcggaga ttcattggta ttggatcctt
      181 gtacggagga agaagcctgt atggatgcta gaataactct taccaccaac tctaatgggg
      241 aatatactgc tgttcaaaag ggttcaaacg gtttcctaac gatcgaacag gtaaaatctg
      301 cagcagagac cgcaaagatt aaaggacaag aactcagact caaattccag gagttgacaa
      361 ccactggtca gtagacggaa acacaaactg acaggactaa agggactggg aataaaatat
      421 ggtgcatcgg tgaggaaacg atatggagtg atctatagga ctttaaagaa gaagaggaga
      481 tgtcccatgt gcgggtccct ccactttggc cgaatagcgg taggaatttg gcattgccca
      541 aaatgcaaat acaagttagc aggtggtgca tacgacgtca atcttgaaaa aatacgaagc
      601 tcacgctaaa attaagatca agatacattc agtgcctatt gatttatctt gcaagttagc
      661 tgaatctatg tgcgctgcat tgaagccaga agtaaaatta gtaaattgtg gtgaaaaaat
      721 agaaatcaga tctttaggtg ccgttgttga tatagtaatt catgcaaaag atattgtatc
      781 aataagggcc gtagttggtt cgtatatgcg gctcgtgcaa acagcctatg gctgtctatg
      841 tgcataggtt cttgtagtgt caattaacgg tatgaattta tcctggtata ttgtaatctc
      901 aggcaaatga gcgaacaaga aattcctccg tggcttaggg agcagctatc aagattacaa
      961 caacttcaac aaaatttgca ggcaattttg atgcaaaagc agcaaataga agtcgaatct
     1021 attgaaactg ctaaagcgct tgaagaacta atgaaattag gtgaagaaga cgtagtgtac
     1081 aaaagcgcag gccccctttt aataaaaaca aagaaaaatg aagccttaaa ggagctagag
     1141 gagaagaaag aactatcaaa tacaagattg atggtactcg gaaagcaaga agccagagta
     1201 aaagagaatc taaaagaggt ggaaaacaag attaatgaaa tgatccgcat aggccaaggc
     1261 caaacaggca atgacctagg ttcaggtgga actccaattt caggcagttg atatcattag
     1321 ggacccatac caagctactc aaccattatg ccattgctta gaacatccta ggaattgaaa
     1381 cacgcatcta atcctcatat cttctgaata acttagagta actccatcaa attatttttt
     1441 tgattaatcg agataattat tacaaattat cctctcagac tttcttcttt tgagggatat
     1501 gtaatttttt attaggaaac atcccaacac gagtgttcaa aacatgagaa atagtgattt
     1561 ctcgcatggc tcacgttacc aggaacagta atagagttaa tttttctaat catcttcata
     1621 ttcggga
//
LOCUS       DATLQL010000123         1192 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2159589, whole genome shotgun sequence.
ACCESSION   DATLQL010000123 DATLQL010000000
VERSION     DATLQL010000123.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1192)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1192)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1192
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2159589"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1140)
                     /locus_tag="VNB68_01320"
     CDS             complement(<1..1140)
                     /locus_tag="VNB68_01320"
                     /inference="COORDINATES: protein motif:HMM:NF005552.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HVD36022.1"
                     /translation="MPIIIKNGSLLLGKSLRFVNNGFIEIGKNGIITNVGRRNYNAGH
                     DNKDKTYELIDAEGFMILPGFINAHTHIGDSIGKDIAVESGLDKRVHPVLGVKRNILH
                     KSKPDHLKTFMRNSALSMMKRGIIAFADFREDGIVGIRLLKEALSGLPIKCIILGRVE
                     YYLKPKDESTGGVLLGGKKKTRKRTNTRLPSHVLKMLSTILKTSDGIGLSGANENTDE
                     SLLQYRELLGKKRSSENKKKKLLLAIHAAESEDTVQFSKLLTGRTEVSRIMQYLRPDI
                     LVHMTNPTDEDISIVRNSNVGIVLCPRANGILGSGIPRVSRMIKTRCIIGLGTDNVML
                     NSPDMFKEMDYLWKVSRATETRFITATEILKMSTVYPAQILNLNSG"
BASE COUNT          307 a          276 c          203 g          406 t
ORIGIN      
        1 tcctgaattc aagtttagaa tttgagccgg gtataccgtc gacatcttta gtatctctgt
       61 ggctgtaatg aaccgagtct cagtcgcccg ggatactttc caaagataat ccatttcctt
      121 gaacatatct ggagaattga gcatgacatt atctgtccct agccctataa tgcatctcgt
      181 ttttatcatt cttgagaccc taggaatacc ggagccaagt atcccgttag ccctaggaca
      241 taatacaatg cctacattgc tattccgtac aatagaaatg tcctcatcag tcggatttgt
      301 catatgcaca agaatatcag gtcttaaata ttgcataatt ctactgacct ctgtcctgcc
      361 tgtaagtaat tttgagaatt gcacagtatc ctctgattca gccgcatgga tagccaataa
      421 caattttttt ttcttatttt ccgatgacct ttttttcccc agaagttctc tatactggag
      481 aagcgattca tcggtgttct cattagcacc gctcagtcca atgccgtcag atgttttcaa
      541 gattgtggat agcattttca gtacatgcga ggggagcctc gtgttagtcc tctttcgggt
      601 tttctttttt cctccaagta gtactcctcc tgtactttca tcctttggct ttagataata
      661 ttcaactctt ccgagtatga tacatttgat aggaagccca gacaaggctt cctttaataa
      721 tctaatgccc actattccgt cttctctaaa atctgcaaaa gcaattattc cccttttcat
      781 catagacaaa gcggaatttc tcataaacgt cttgagatga tccggtttac tcttgtgcaa
      841 gatgtttcgt tttactccta acacaggatg gacgcgtttg tccaatcctg actccacagc
      901 tatgtctttg cctatcgagt cacctatatg agtatgggcg ttgataaagc caggcagtat
      961 cataaatcct tctgcgtcga ttaattcata cgtcttatct ttattgtcat gccctgcatt
     1021 atagttgcgt cttccaacat ttgttataat tccatttttc ccaatctcaa tgaagccatt
     1081 attaacaaat cttaagctct tacctaacag aaggctgccg ttctttatga ttataggcat
     1141 cttatttcgt aaacaggctg aacctttcct aacgatcgta aatctctaat gg
//
LOCUS       DATLQL010000124         1039 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_29135, whole genome shotgun sequence.
ACCESSION   DATLQL010000124 DATLQL010000000
VERSION     DATLQL010000124.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1039)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1039)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1039
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29135"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..187)
                     /locus_tag="VNB68_01325"
     CDS             complement(<1..187)
                     /locus_tag="VNB68_01325"
                     /inference="COORDINATES: protein motif:HMM:NF013224.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC ligand binding domain-containing
                     protein"
                     /protein_id="HVD36023.1"
                     /translation="MTYETMAATAYILITFDSGDEGHIIRALSQTSGITECSVLDGPY
                     NMIIKMDADDMDKLDEVV"
     gene            complement(378..>1039)
                     /locus_tag="VNB68_01330"
     CDS             complement(378..>1039)
                     /locus_tag="VNB68_01330"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HVD36024.1"
                     /translation="HELRTPIQPILSLSEILRSKNGDSEHGEFLEIITRNAKRLQQLT
                     QDILDVTRIESESLTLHKERINIHDVITQAVRNHRAEFEKAGGDLKLLYDPSDKQAIM
                     LDVDRIRVIQVVSHLLGNAIKFSKKGVISIAVTVDKKHENNEKVIVSVKDSGPGIDPE
                     IFPKLFSRFISKSFSGTGLGLFISKSIVEAHGGNMWAEKSNNSTARGATFHFTLPILT
                     Q"
BASE COUNT          278 a          216 c          194 g          351 t
ORIGIN      
        1 ctacgacttc gtccaacttg tccatatcat ctgcatccat tttgataatc atattgtatg
       61 gaccatctaa tacactgcat tctgttattc ctgacgtctg actcaaggca cggataatgt
      121 ggccttcgtc accagaatca aacgttatta atatatacgc tgtggctgcc atagtttcgt
      181 atgtcatgag aagtacatgt attgacttaa gaatgctttt gattcttctg cctacaatta
      241 gtccttggct gggtttgttt cccgttcttt gcggtagata atgcggtaaa ttatttttgc
      301 agatttccta atgaaacttc aaaaagtcct attctagtta atggcatttt gtgttcgagt
      361 aggaatacgt tgaagggcta ctgagttaga attggtaaag tgaagtggaa cgtagctccc
      421 cttgcggtac tattattgct tttttcagcc cacatgttcc cgccgtgagc ttctacaatg
      481 ctctttgaaa taaagagtcc caacccagtt ccagagaagg actttgaaat gaatctagaa
      541 aacaactttg gaaatatttc aggatctata ccgggaccac tatccttaac agaaacaata
      601 actttttcat tattttcgtg ttttttatct actgtcacag cgatcgagat aactcctttc
      661 ttactaaact tgatagcatt gcccagcaga tgactaacaa cttgaatgac tcttattctg
      721 tctacatcta acataatagc ttgtttgtcg gatggatcat acaacaattt tagatcgccg
      781 cctgcctttt cgaactcggc tctatggttc cgtactgcct gagttataac atcatgtata
      841 ttgattcgtt ctttatgaag cgtaagtgac tcgctttcaa ttctagtaac gtccaagata
      901 tcttgagtga gctgctgcaa tcttttcgca tttctagtaa tgatctccaa aaattcacca
      961 tgctccgaat ctccattttt cgagcggagg atttcggata aactcagaat aggttggatg
     1021 ggtgtccgca attcatgag
//
LOCUS       DATLQL010000125         1381 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_916570, whole genome shotgun sequence.
ACCESSION   DATLQL010000125 DATLQL010000000
VERSION     DATLQL010000125.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1381)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1381)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1381
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_916570"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            25..>1381
                     /locus_tag="VNB68_01335"
     CDS             25..>1381
                     /locus_tag="VNB68_01335"
                     /inference="COORDINATES: protein motif:HMM:NF013591.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family metallopeptidase"
                     /protein_id="HVD36025.1"
                     /translation="MAMQNAEIFVEFFSEPRLLYLSAIETIADAKTKNLELRLHRLRR
                     EKIISTNGKYRIKNARVNWNTWRQFNSAEDDVKVRKSVFDEFIAKTHFIAPTIEKRFN
                     IIRNLFSWFSKKDNPLVENSYRSHLDPLSSYLESEQVTYSQLKGLVTKMGEGARRPFA
                     HSLSLASQIIGRTPEYYDDFYYFRNRIFRDVEKPFAKVDPVMAVKRTLKSMGFDLSAI
                     SFDVEDRPTKYPSPICFFVKIPNDIRVLYKSESPYFDLQGCYHETGHAVHAATIDTNL
                     SYANKYKFPMGIAEIFSIFLERLTMNPSYLSSVLGIRNEKLLDKLVERNKFMELFFVT
                     FYSANSLMKMEYWRKDLSIDQASQLYERLIKKYTGFKIPGQYWMLHHILPEAIMYVPS
                     YLMAASRAAELEIYLKDRFGERWWNEEGAAKLLKEVMSQGGKIDLSIFSSMDPNIFMK
                     EI"
BASE COUNT          453 a          248 c          279 g          401 t
ORIGIN      
        1 aaggttctaa agcgactttc tttgatggca atgcaaaacg ccgagatttt cgtcgaattc
       61 ttctctgaac ctcgtttact ttatttatca gctatcgaaa cgatagctga tgctaagaca
      121 aaaaatcttg aacttaggct gcaccgtttg agacgggaaa agataatcag cactaatggg
      181 aaatacagaa ttaagaatgc acgagttaac tggaatactt ggagacaatt taacagtgca
      241 gaggatgacg tcaaggtaag aaaatctgtt ttcgacgagt tcatcgcaaa aacccatttt
      301 attgcaccta caattgaaaa aagattcaat ataatacgaa atttattttc ctggttttca
      361 aaaaaggata atcctttagt tgaaaatagt tatcgctcac accttgatcc attatcgagc
      421 taccttgaaa gtgagcaagt cacatattcc caattaaagg gacttgtgac taagatggga
      481 gagggtgcaa gacggccctt cgctcactct ctgtcactag cttcacagat tattggaaga
      541 acaccagagt attacgacga tttttattat ttccgaaaca gaatttttag agacgtggaa
      601 aaaccctttg cgaaagttga cccagtaatg gctgttaaaa ggactctaaa atcaatgggc
      661 tttgatttgt ctgcgatatc atttgatgtg gaggatcgac caacaaaata cccttcaccg
      721 atatgcttct ttgtcaaaat cccgaatgac attagggttt tgtacaagag tgaaagtcca
      781 tactttgatc ttcaaggctg ttaccatgag acaggacacg cagttcatgc tgcaaccata
      841 gacactaatc taagctatgc taacaaatac aaatttccga tgggaattgc agagatattt
      901 tcaatattcc ttgaacgact aacaatgaac ccatcatatc tgagttctgt attaggcata
      961 cggaacgaga aacttttgga taaacttgtc gaaaggaaca aatttatgga attatttttt
     1021 gtcacgtttt attcggccaa ttcccttatg aaaatggaat attggaggaa ggacttatct
     1081 attgaccaag ctagtcaact ttatgagcga ttgatcaaga agtatactgg atttaaaatt
     1141 cctggccagt attggatgtt acatcatatt cttcccgaag ctataatgta cgtgccaagt
     1201 tatctaatgg ccgcgtctag agccgccgag ttagaaattt acctaaaaga tagatttggc
     1261 gagcgctggt ggaatgaaga aggcgcagca aagctattga aagaagttat gtctcaaggt
     1321 ggaaagatag atctaagtat tttttctagc atggatccga atatctttat gaaggagatc
     1381 a
//
LOCUS       DATLQL010000126         1346 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2160508, whole genome shotgun sequence.
ACCESSION   DATLQL010000126 DATLQL010000000
VERSION     DATLQL010000126.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1346)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1346)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1346
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2160508"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            254..1330
                     /locus_tag="VNB68_01340"
     CDS             254..1330
                     /locus_tag="VNB68_01340"
                     /inference="COORDINATES: protein motif:HMM:NF012360.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36026.1"
                     /translation="MFKRNKVNLTLTEPGHHLQSMLDPQKPEGDTLGALSVAGNTLVL
                     RNIGILASLYDLDRIRIPEKYPHLLKLIQETFPSITLDVCCNVKCSQTISESKRHYGA
                     QGNFINDSVRAPPCEERSAHLYADVPDADLDTETSLVLSTEIENDVAIQLPLNSVLWF
                     SKTGKERLYADLITYPWDFLNISQKILHEEIKESKISPTASIAKSSIVEGPCIISDDV
                     IVDDFCKIKGPTYIGKGSYIGMGSLIRNCIFNDETRIGFHCEIGKSYFAGHDKISHQN
                     VILDSIIGENVWFGGYSGTANVLLDRQNVKYRIGDTLVNTGTDHFGAVVGNNCAIGAS
                     VIILPGRHVSPSSVIQAGTLLGKC"
BASE COUNT          425 a          260 c          272 g          389 t
ORIGIN      
        1 ctgctcgctt tccaaatatg attccactgc cgattctgca attgctttta caacgctata
       61 tccgccctct tcagtaagag tatacctatc ctggattatg atgctgtgag tagaaaccaa
      121 taatttgatc taatcaagaa atgttctaac tcttactcta gtacaaagaa atctttgaat
      181 ccacataatc ttttttattg gaaattgagt ctaatccctt acttatttct agatttatat
      241 agcgtcataa ggattgttca aaagaaataa ggtgaatctg acactcacag aacctggcca
      301 tcatctacaa tcaatgctag acccccaaaa accagaaggt gatacgcttg gagcactgag
      361 tgtagcagga aatacgctag tacttagaaa tataggcatt ctagcgagct tatatgatct
      421 tgatagaatc agaattcccg aaaagtatcc gcatttacta aaactgattc aggaaacttt
      481 tccatcaata accctcgatg tatgttgcaa tgtaaaatgt agtcagacta tcagtgaatc
      541 taaaaggcac tatggcgcac agggtaattt tattaacgat agtgttcgag caccgccctg
      601 tgaagaacgt agcgcccacc tctatgctga cgttcctgat gctgacttag acactgagac
      661 atctttagtt ctcagcacag aaatagaaaa tgatgttgca atccaactgc ctcttaattc
      721 ggttctgtgg ttttctaaaa ccggaaagga gaggctatat gccgatctaa ttacttaccc
      781 atgggacttt cttaacattt cacagaagat tctgcatgag gagataaagg agagtaaaat
      841 ttcaccaaca gcctcaattg ctaaatccag tatagtcgaa ggtccatgca ttatttcaga
      901 tgacgtcata gtcgatgatt tttgcaagat aaaaggaccc acttacatag gcaagggtag
      961 ttatattggg atgggttcac ttattagaaa ttgtattttc aacgatgaga caagaattgg
     1021 gtttcattgt gaaatcggta aatcatattt tgcgggacat gataagatct cccatcagaa
     1081 cgtaattctt gatagtataa taggagaaaa tgtttggttc ggaggatatt cgggaacggc
     1141 caacgtttta ctcgatagac aaaatgtgaa gtatcgcatt ggtgacactc tagtaaatac
     1201 cgggacagac cactttggag cagtagttgg aaataactgt gcaattgggg cttctgtaat
     1261 tattctcccg ggaaggcatg tttcgcccag tagtgtaatc caagcgggga cgcttcttgg
     1321 gaaatgctaa cgacactaaa caagca
//
LOCUS       DATLQL010000127         1204 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_741364, whole genome shotgun sequence.
ACCESSION   DATLQL010000127 DATLQL010000000
VERSION     DATLQL010000127.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1204)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1204)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1204
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_741364"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            524..>1204
                     /locus_tag="VNB68_01345"
     CDS             524..>1204
                     /locus_tag="VNB68_01345"
                     /inference="COORDINATES: protein motif:HMM:NF024660.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PHP-associated domain-containing protein"
                     /protein_id="HVD36027.1"
                     /translation="MFSNFRNGSTLVPFDCGISFTEQLERARNNGINALFVTNHNTTD
                     GYRQILEFKNNHAKYNDLRIYPAEEVTIDNQGHVLAYGITEEVEPGMSLEETLDRIKS
                     LNGVSSAAHPFAVSNGIREKAIHCDLIESFNSNNIDHASNLVATKFATDNHLVNVAGS
                     DSHIASTIGRCVNSVECENNLDSILESMRSGKIDIVKSEYISRNELYEHAHYVLSSSK
                     ESILEYALS"
BASE COUNT          396 a          207 c          237 g          364 t
ORIGIN      
        1 aagtcgcggg actttgtagc cgggcaagca gttatagaat caaataagtt tattgtcctc
       61 tgcttccatt gtatgcggga ttaacaacct aatggctgcc ttgcttagtt taaattgctg
      121 tgtctatctt ccaatgcatt cacattggtg aggatttcta ggaaacttat acgttttaac
      181 gtaaaaaatc ctgaaaacag gaaattagaa agtgagtcta tcaataaatg ggtatatagt
      241 agaaatattt tcaaatattc ttgcgagaaa tgtacattat cgttcggaac atggaaacag
      301 ttacatcagc ataaggtaga gagtcattca tactgatagt caaatattcg ggacatgtga
      361 taattgcttt tatttacatc aatgaagacg ctattaatat cgagaataat catattctaa
      421 atgactattt ctacagaatt ggtatatatt tggcaatatc tgaatgatta ttaggtaaga
      481 cgatacgaca gaaagaattc tcctcgaatt acactctcat aatttgttct ccaattttcg
      541 caacggatct acccttgtcc cttttgattg tggaataagc tttacggaac aacttgagag
      601 agctcgtaac aatggcatta atgctctttt tgttacaaat cataatacaa cagacggtta
      661 tcggcagata ctagaattca aaaacaatca tgcaaagtac aatgatttga ggatatatcc
      721 tgctgaggag gtcacgatag ataatcaagg acatgtcctt gcgtatggta taacggaaga
      781 agttgaacct ggtatgtcat tggaagagac tttggacaga atcaaaagtc tgaacggtgt
      841 ttcctctgcg gcacatcctt ttgctgtgtc aaatggcatc agagaaaagg caattcattg
      901 tgatttgatc gaatcgttca acagtaataa tatagatcat gcttcaaatt tggttgcaac
      961 gaagttcgca actgataatc atctcgttaa tgttgctggg agcgactctc atatcgcatc
     1021 aactatagga cgttgcgtta attcagtcga atgtgaaaac aatcttgact ccatccttga
     1081 atcaatgagg tcagggaaga tcgacattgt aaaatcggaa tacatcagca gaaacgaatt
     1141 atatgaacat gcacactatg tgctttctag ctcaaaagaa tcgatactcg aatacgcatt
     1201 gagc
//
LOCUS       DATLQL010000128         1936 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1984371, whole genome shotgun sequence.
ACCESSION   DATLQL010000128 DATLQL010000000
VERSION     DATLQL010000128.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1936)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1936)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1936
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1984371"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1791
                     /locus_tag="VNB68_01350"
     CDS             <1..1791
                     /locus_tag="VNB68_01350"
                     /inference="COORDINATES: protein motif:HMM:NF014516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36028.1"
                     /translation="VKNSEKIRLAENDPNIIGTLSDFVHSSSIKNLPTYLFGNTILVR
                     TASKAYELSQEGYRTVTVDGELFEPRASSMLLDFGSKLSDLTLDIILSNHINSLTESS
                     KQLEEVMKAKQKDLREINNQIETRQISLKRFDDIVTESSVNTSHLNESISMLEKTIVD
                     MDEELLSTTSEASNVEYQLQGLKRRVNVIENAVNRYSAEISKSLLDNSTLEFSQLNSE
                     KKELLKLIEMSEIETREMVTSYSSAENEFKIQRERKLELESELEMLRVENEEKIHQVE
                     TASSRSEYLEAELIGLREEEQRIIETAGGSYSVLQEYEKRIKVLSEQERQLSREFNGI
                     EKETVALKKDVSSFSSQESQAYNDLIWLGYKELVESEPFDVENIIRELTQESDEMRSS
                     LNLRADESYVQVTEGYRGMSGRKNELESERNSIVYFIEEIVREKKTVFMEAFQKVDQD
                     IRKTFSQVSEGSAYLQMENEEDVFSGGLMYLVQFPGKPPRESTALSGGEKTMAATIFL
                     LALQALKPSPFYLMDEVDAHLDAQNTEKLSKVLFERSKGNQIIMVTLKDSTVAKADQI
                     FGVYPKSGLSQVVHYRNPSHVPLAEVKTAD"
BASE COUNT          676 a          323 c          410 g          527 t
ORIGIN      
        1 gttaaaaatt cagaaaaaat acgccttgca gaaaatgatc ccaacataat aggaacctta
       61 tctgattttg tacattcatc atccattaag aatctgccga cctacttgtt tgggaacaca
      121 attcttgtta gaaccgcgtc taaggcgtat gagttatcgc aagaaggcta tcgcacagtc
      181 actgtagatg gagaactatt cgaaccacgg gctagttcaa tgttactgga ttttggttct
      241 aaactatcag atcttacttt ggacatcatt ctgagcaatc atatcaattc tctaacagaa
      301 tcgtcgaaac aattagaaga agttatgaaa gcaaagcaga aagatcttag agaaataaac
      361 aatcaaatag agacaaggca gattagtcta aaaagatttg acgacatagt tactgaatca
      421 agtgttaaca cgagccacct gaatgaatcg ataagcatgc tagaaaaaac aattgtagat
      481 atggatgaag aattactgtc gacgactagc gaagctagca atgttgaata ccagctccaa
      541 gggctcaaga gacgtgtgaa tgtcatagaa aatgcagtta atcgctattc tgctgagata
      601 agcaaaagct tgttggataa ttcaaccttg gagttttctc agctgaattc tgaaaaaaaa
      661 gagctcttga aattaataga aatgtcagag atcgagacga gagagatggt aacttcctat
      721 tcttcggctg aaaatgagtt caagattcaa cgggaaagga aattggagtt ggagagtgaa
      781 ctagaaatgt taagggtaga aaatgaagaa aagatacatc aagtggaaac tgctagcagc
      841 cggtcagaat atttggaagc agagctaata ggcctaagag aagaggaaca gcgaataata
      901 gaaacggccg gaggatcata ttcagtcctt caggaatatg agaaacgaat taaagtactt
      961 tcagaacaag aaagacagct ctcgagagaa tttaacggaa tcgaaaagga aaccgtagct
     1021 cttaaaaagg acgtttcaag cttttcttct caagaatctc aggcttataa tgatctaatc
     1081 tggttggggt ataaggaatt agttgaatca gaaccctttg atgtcgaaaa tattatcagg
     1141 gaattgaccc aagaaagcga tgaaatgcgg tctagtttga atttgcgagc tgatgaaagc
     1201 tatgttcaag ttacagaagg atatagagga atgtcaggta gaaagaatga attggagtcc
     1261 gaacggaact caatagtgta tttcattgaa gaaattgttc gagaaaagaa aacagtcttt
     1321 atggaagcgt tccagaaagt ggaccaagat attagaaaaa ctttttctca ggttagtgaa
     1381 ggtagtgcat atctccagat ggaaaatgaa gaagacgtgt tttcaggtgg cctaatgtat
     1441 ttagtccagt ttcctggaaa gcctcctcgc gaatctactg ctttgtctgg cggcgagaaa
     1501 actatggctg ccacaatatt tttgttagca ttacaagcct taaaaccatc accattttac
     1561 ttgatggatg aagttgatgc acatttggat gctcaaaaca ccgaaaaatt gtccaaggtt
     1621 ttatttgagc gttccaaagg caaccagata attatggtta ctcttaaaga ttccactgta
     1681 gccaaggcag atcagatttt tggcgtctat cctaaatcag gcctttcaca agtcgtacat
     1741 tatagaaatc ccagtcatgt tccacttgct gaagtaaaga ctgccgacta ggtataatta
     1801 tcaaattcaa tcttagttcg tattcataat gtttttctac tttggaacaa acagtatcct
     1861 aacaacattc agaaatgatg aattaattca attccagttg aagatatcgc tttctgcatg
     1921 gtgtttcgtt tccatt
//
LOCUS       DATLQL010000129         1794 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1095578, whole genome shotgun sequence.
ACCESSION   DATLQL010000129 DATLQL010000000
VERSION     DATLQL010000129.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1794)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1794)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1794
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1095578"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..916)
                     /locus_tag="VNB68_01355"
     CDS             complement(<1..916)
                     /locus_tag="VNB68_01355"
                     /inference="COORDINATES: protein motif:HMM:NF013226.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiA family prenyltransferase"
                     /protein_id="HVD36029.1"
                     /translation="MAQVVDYSPSHIIIKNDVLRSVRDFTVSQLLLLNYRKRWGMIYA
                     FATLAGIFCLPNAVFDLTQNAGYIISVVLKSLTLPLGSFMIIVGMYVLNDLVDSNLDR
                     ANGKDRPIATGKVSKTQAWVFVTMTNILGILLCLIGNDMTGIVISVGLVSIGIMYSAP
                     KISLKDRFVVKTLAIAVAMMLCITLGATSLWSLNVTTSLNIPYNPIFLTIYIASMLGG
                     MVFITSPFNDVADVQGDKAAGRKTIPIVIGRENTVKVAIYIAASMAGVSWIVFTMMHT
                     GWIMPILVSAVSGITIINMYRTLRRLDDR"
     gene            complement(1175..1669)
                     /locus_tag="VNB68_01360"
     CDS             complement(1175..1669)
                     /locus_tag="VNB68_01360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36030.1"
                     /translation="MIFSLGEETVTINSPFLENLCLYTARPNLKLRKLMKLDSPADII
                     AAIADGSSLDLFNSIARGASGSEELKNSKGLTRKQFYSRTGKLLRVGLIKRNKGKFSL
                     TALGTVVYHAQMEIENAAKNYWKLKAVDSIQSSAEIGEHERVKLIKTILDDSTIENVL
                     VKNQ"
BASE COUNT          540 a          374 c          312 g          568 t
ORIGIN      
        1 tacgatcgtc caatctcctc agggttctat acatatttat gattgttatc cctgacactg
       61 cactaactaa tattggcata atccatcctg tatgcatcat tgtaaaaaca atccaagata
      121 caccggccat gcttgcagcg atgtatatag ctaccttaac tgtattttct cgccctatta
      181 ctatcggaat tgtttttcgt cctgcggcct tgtcgccttg gacatctgca acatcgttaa
      241 atggtgaggt tatgaaaacc attcctccga gcatcgaggc aatatagata gtaaggaaaa
      301 ttggattata aggaatattc aaactagttg tgacgttcaa tgaccacaat gatgtagccc
      361 caagtgtgat acacagcatc atagctactg caattgcaag cgtttttact acaaaacgat
      421 ccttaagtga gatctttgga gcagaataca taatacctat cgatactaat ccgacggaaa
      481 taacaatgcc cgtcatatcg ttgccgatta aacataacaa tattcccaag atatttgtca
      541 tggtaacaaa tacccatgcc tgagtttttg atacttttcc tgttgcaatt ggtctgtcct
      601 ttccgtttgc acggtccagg ttagagtcta ctaaatcgtt caacacgtac ataccgacta
      661 taatcatgaa agacccaagc gggagagtta gagactttaa aacgacgcta atgatatatc
      721 cggcattctg agttagatca aatactgcat taggaagaca aaaaatacct gctagggtag
      781 caaaggcgta aatcatcccc catctctttc gataatttaa taaaagtaac tgcgatacag
      841 taaagtccct aacgcttcta agaacgtcat tcttgatgat tatgtgcgat ggagagtagt
      901 cgacaacttg agccatattg agccgctctc ctttgtcctt tttattgtct ttggcgcaga
      961 atttggctga atttggctaa aattcacgta tgtgccttat atttttgatt cctactccaa
     1021 cttgggagaa aaacctagtg cattagcacg ttaagactac atttgactaa ttcgatctga
     1081 aagtaattct atcgactaat ctgaggatca aattatcctc cgaaaaacta caaaaataat
     1141 taaagtgacg ctaatgctac gtcgaattat tcaattattg attttttaca agtacattct
     1201 caattgttga gtcatctaaa attgttttaa tgagcttcac gcgctcatgt tcacctattt
     1261 cagcggaaga ttgaatcgaa tcaactgctt tgagcttcca atagttcttt gctgcatttt
     1321 ctatttccat ttgagcatga taaacaacag tacccaaggc agttagagaa aattttcctt
     1381 tgtttctctt aatgagcccg acccgcaata acttaccagt tctcgaatag aattgtttcc
     1441 ttgtaagtcc cttagagttt ttgagctcct cacttccact agcacctctt gcaatggaat
     1501 tgaatagatc taatgaacta ccgtccgcaa ttgctgctat gatatctgcc ggcgaatcta
     1561 acttcattaa ttttcgtagt tttaaattag ggcgtgcagt ataaagacat aagttctcca
     1621 aaaatggaga atttatggta acagtttcct ctcctaacga aaaaatcaca gataacccga
     1681 tttttctgat taatggccta ccgtatttgt tggattgtat tcgctggtgt catagtagca
     1741 gttaacatgc caggttacac ctcttaatca cgattattaa catacgatat cttg
//
LOCUS       DATLQL010000130         1442 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1272983, whole genome shotgun sequence.
ACCESSION   DATLQL010000130 DATLQL010000000
VERSION     DATLQL010000130.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1442)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1442)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1442
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1272983"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..518
                     /locus_tag="VNB68_01365"
     CDS             <1..518
                     /locus_tag="VNB68_01365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="dehypoxanthine futalosine cyclase"
                     /protein_id="HVD36031.1"
                     /translation="KTDEWLRIMEQAHDIGLKSSATMMYGTVESLEQRARHIMKIADL
                     QRKTGGFMSFIPWSFEPNKTQIQSEGLVKYPSGGLNLLKTIAIARIVYYGLIDHLQSS
                     WLTNGIGMAQLALNYGADDFGGTLIGEEVVSSTGARSTELTATNIITAIKEIGYQAVE
                     RDNFYRTVKSY"
     gene            713..>1442
                     /locus_tag="VNB68_01370"
     CDS             713..>1442
                     /locus_tag="VNB68_01370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004421 - hydroxymethylglutaryl-CoA
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006084 - acetyl-CoA metabolic process
                     [Evidence IEA];
                     GO_process: GO:0010142 - farnesyl diphosphate biosynthetic
                     process, mevalonate pathway [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA synthase"
                     /protein_id="HVD36032.1"
                     /translation="MPVGIDDLAIYVPKLYIDYMDFAQARGIDPQKLEYGIGIRKMAL
                     VDTNQDPACMAANACLKLMQRNHLHPEDIGRLYIATESALDESKAMNSFVVGMLEQVY
                     GECSFEHAGGIECKFACVSGSYALYDNANWIRAGENNGKSAIVIVSDIAKYDIGSSGE
                     YTQGAGAVAMLVKDNPRLLAFDQKVASTIIKNEYDFYRPIGKETPLVNGNYSNLLYLI
                     QVKKAFDSYKEKALASGLIQIRDGE"
BASE COUNT          475 a          238 c          317 g          412 t
ORIGIN      
        1 ttaagactga tgagtggctt cgcataatgg aacaggccca cgatataggt ctgaagtcat
       61 cagctacaat gatgtatgga acagtggaaa gcctggagca acgcgcacgc catattatga
      121 aaattgcgga tttgcaacga aaaacagggg gctttatgtc atttatacca tggagttttg
      181 aacccaataa aactcaaatt caatcggaag gcctagtaaa atatccgtca gggggactaa
      241 atttattaaa aacaatcgcg atcgcaagaa tagtatacta tggtttgata gatcacctgc
      301 aatcttcatg gttaaccaat ggaattggta tggcccagct tgcactgaac tatggtgcag
      361 acgattttgg tggtactctt attggcgaag aagtagtaag ttctacgggt gcaaggtcta
      421 ccgaactaac agcgacaaat attataactg caatcaaaga aataggatat caggcagttg
      481 aaagagataa cttttaccgt actgtgaaaa gttactagag gattacgaat aatactcctt
      541 ttatcataag aagctctcta ataccttcag gtaaagcgat gttcatgctg aaaattacct
      601 caaatagaag ctgattataa aatatctagg ttattgcgtt aactaacttt attggtttta
      661 tcaaatctaa ttacaaatac gtttaaattg tatactcttg tatcatggtt gaatgccagt
      721 aggtattgat gacctggcta tctatgtacc gaagctttat atcgactata tggattttgc
      781 gcaggcaaga ggaattgacc cacagaagtt agaatacggt ataggaatta gaaagatggc
      841 tttagttgat acaaatcaag atcctgcttg tatggccgca aatgcatgtc taaaattaat
      901 gcaacgaaat catttacatc ctgaagatat aggtaggttg tacatagcta ctgaatctgc
      961 tcttgacgaa tcaaaggcaa tgaattcctt tgtagttgga atgttagaac aggtgtatgg
     1021 tgaatgttca ttcgaacacg ctgggggaat tgaatgcaaa tttgcctgcg taagcggttc
     1081 atatgctctc tatgataatg caaattggat cagagcagga gagaataatg gcaagtctgc
     1141 tattgttata gtaagcgaca tagcaaaata tgatattggt tcttctggcg agtatacaca
     1201 gggtgctggg gcagttgcaa tgcttgttaa ggataatcct aggctactcg cgttcgacca
     1261 gaaagttgct tctactatta taaaaaatga atatgacttt tacagaccta ttggcaaaga
     1321 gacaccttta gtcaatggga attattctaa cctgttgtat ctcatccaag taaagaaggc
     1381 atttgacagt tataaggaaa aggcactggc aagcggcttg atccaaataa gagatggcga
     1441 at
//
LOCUS       DATLQL010000131         1072 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1629429, whole genome shotgun sequence.
ACCESSION   DATLQL010000131 DATLQL010000000
VERSION     DATLQL010000131.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1072)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1072)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1072
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1629429"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1072
                     /locus_tag="VNB68_01375"
     CDS             <1..>1072
                     /locus_tag="VNB68_01375"
                     /EC_number="3.2.1.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="sialidase family protein"
                     /protein_id="HVD36033.1"
                     /translation="DNNVYVTWEDDSSENSRIFFRGSHNNGRIFDKIVDISNGTIGSS
                     LQNIASYKNSVYIVWVGSKPEDPKNFEVFLRKSNDYGRNFGPIIDLSKSAGDSIDPHI
                     VVPRDGHNVYVIYTDCDAVHDDPLCGIYFIKSSDSGIRFGSPTLISIVSSTNPYLPSL
                     GHSHPPITPSLLPAFGMNTQKQIDEHNSIIPVITSSEDGKDVYVLWQDDLTKTGATDI
                     FFRKSNDYGNTFGDSINLSDTPGISRLAQMVALGGNLYVVWSDTNMTFAQFDIFFTKI
                     NDHGNNLGKTINLSNSMTNSAPSDIGAVNNTNRLYVAWTEGTGNKTNIFMTRSADDGD
                     TFDKPIKLISNNSLNPALIHISN"
BASE COUNT          348 a          209 c          207 g          308 t
ORIGIN      
        1 gacaataatg tctacgtaac atgggaagac gattcttctg agaattcacg catctttttt
       61 aggggtagtc acaataacgg aaggatcttt gacaagatag tcgatatcag taacggaact
      121 attggctcga gtcttcaaaa tatcgcctca tataagaact ctgtatacat tgtttgggtt
      181 ggcagtaaac cagaagaccc aaagaacttt gaagtattct taagaaagag taatgactat
      241 ggtagaaact ttgggcctat aattgacttg agtaaatctg cgggtgactc gatagatcct
      301 catatcgtag taccgagaga cgggcacaat gtatatgtta tatacactga ttgtgacgca
      361 gtacacgatg atcccttgtg tgggatctat tttatcaaga gcagcgatag tggaatcagg
      421 tttggatcac ctacactgat tagtattgtt tcttcaacca atccgtatct cccatcttta
      481 ggacattccc atcctccaat caccccatct ttattgccgg catttgggat gaacacccaa
      541 aaacaaatag atgagcataa ttctataatt cctgtaatta cttcatccga agatggaaaa
      601 gatgtctatg tcttatggca agacgacctg acaaaaaccg gtgcaactga tattttcttc
      661 agaaagagta atgactatgg gaatacattt ggtgattcaa taaatctcag tgataccccc
      721 ggaatctcta ggcttgcaca gatggttgca ctaggaggca atctatatgt tgtctggtct
      781 gacacgaaca tgacatttgc tcaatttgat atatttttta caaagatcaa tgatcatgga
      841 aacaatctag gaaagacaat aaaccttagt aattcaatga caaactcagc tccttctgat
      901 attggagcag taaataatac caatagatta tacgttgcct ggaccgaagg cacaggcaat
      961 aaaaccaata tattcatgac cagaagtgct gatgacggcg atacatttga taagcctatc
     1021 aaattgattt ctaacaattc cctcaatcct gcattgattc acatatcgaa cg
//
LOCUS       DATLQL010000132         1844 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1984941, whole genome shotgun sequence.
ACCESSION   DATLQL010000132 DATLQL010000000
VERSION     DATLQL010000132.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1844)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1844)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1844
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1984941"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(132..731)
                     /locus_tag="VNB68_01380"
     CDS             complement(132..731)
                     /locus_tag="VNB68_01380"
                     /inference="COORDINATES: protein motif:HMM:NF024635.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HVD36034.1"
                     /translation="MYHRAHKKKYRLVITGNPGVGKHTTAKFLVQSLIGAKIVDINKI
                     AIDNNVMITKKARDNAEIDKKRLAKLMKFELKNLQHLVIVGHLAPYVMKSLAIDLVVV
                     LRRSPNELSRIFEERKYSDRKIKENIASEILDICLYDAVMTFGKDKITEFDTTGKRPQ
                     EITNKILLSLYKPSTRRLGTVDWLTPIYQKGDINKFMEY"
     gene            complement(1243..1536)
                     /locus_tag="VNB68_01385"
     CDS             complement(1243..1536)
                     /locus_tag="VNB68_01385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HVD36035.1"
                     /translation="MPIAIIPDVDEQRCIGCALCVEICTALGPDVLRVKPVEGWKRGK
                     AFIFYPERCISDGACIGVCPTHAIFWMRPMEYTSGQPVPLHKNGVFDKGWEEG"
     gene            complement(1660..>1844)
                     /locus_tag="VNB68_01390"
     CDS             complement(1660..>1844)
                     /locus_tag="VNB68_01390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36036.1"
                     /translation="EDLKKRTRKGDEQNKPLLNQVNYVLLHLHLAGKHDAKPSHAELK
                     DWLHSGQVDVLRMTKK"
BASE COUNT          522 a          370 c          321 g          631 t
ORIGIN      
        1 atgttttgtt catcctagta gtaatatata tatgaatttt agaatagccc ctatacgtgc
       61 gagctgagat atgataagat atgacactca gattcgtgtt acttttccct tgatacagat
      121 tgaggttata gtcagtattc catgaactta ttgatatctc ctttctgata tataggtgtg
      181 agccaatcta cagtaccaag tctacgggtc gacggcttgt ataaagatag caagattttg
      241 tttgttattt cttgaggcct ctttcctgtt gtgtcaaatt cggttatttt atctttgcca
      301 aaagtcatta ctgcatcata aagacatata tcgagaattt cacttgctat attttccttt
      361 atttttctat ctgaatactt tcgctcttca aagatccttg atagttcatt cggcgaacgt
      421 cgtaaaacta ctacaagatc aattgctagg gacttcatga catatggtgc aaggtggcca
      481 acgatcacta ggtgctgcaa gtttttcagt tcaaatttca tcagtttggc caatcttttc
      541 ttgtcaattt ctgcattgtc gcgagccttt ttcgtgatca taacgttatt atcaattgcg
      601 attttattga tatcgacgat ctttgctcct attaaacttt gaacaagaaa ttttgcagtg
      661 gtatgttttc ctactcccgg gttcccagtt ataaccagtc tatatttttt tttatgagct
      721 ctatgataca tttttccgga gatccttttg tctacacatt atactaagta gcaggtactg
      781 tatcagtcta ccttctggct taatgttttt cactattcaa tcaacggttc ccttgtcatc
      841 acgcgcacgc ttttctcgat tgacggccat attacgccag atgacgtctt aaaaagtgta
      901 ctgctctcca gagaacgctt aatattcatg cgttataatg ctgttttttc ggagaaactc
      961 taggcatgat aaagcttaag acccatggaa ttctagcaga atttatgagt tctgggctat
     1021 gtctaaggac aaagacttaa caaatctgac caaagtcgtt gtgaatttta gtgcgtgagc
     1081 acgtgctaaa ataatcttcg cgaatgtttg taaagaggtt ctaaaacgtc ttgtgaattc
     1141 caatgtcaca tatgtgaaca acagaaaata ctagaacaaa tacatgtgtt tacaaaaatg
     1201 taagagggga gataattttt cgagtccagc gaaagctttt gtttaacctt cttcccaacc
     1261 tttatcgaat acaccattct tgtggagcgg aactggttgt ccagacgtgt attccatagg
     1321 tctcatccaa aatatcgcat gtgttggaca tactccgata caagcaccat ctgaaatgca
     1381 cctttctggg taaaagatga atgccttccc tcttttccat ccttctactg gtttaactct
     1441 aagaacatct ggccctagag cagtgcaaat ctccacacac agagcacaac ctatacatct
     1501 ttgttcatca acgtctggta ttatagcaat tggcatcttc taattcacta tggttgcata
     1561 cgttctaaag tatttaaaca ctatgctact cacaaaacag tgttataaaa aaagtgaaat
     1621 aatttttgac caatgtaaag aaaaataaaa gggtgccctt tactttttgg tcattctaag
     1681 tacatctact tgaccactat gtaaccaatc cttcagctca gcatgacttg gcttagcatc
     1741 atgctttcca gctaaatgta gatgcaaaag aacatagtta acttgattca gcaacggctt
     1801 gttttgttca tcgcccttac gggttctttt tttaagatcc tcag
//
LOCUS       DATLQL010000133         5414 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_918721, whole genome shotgun sequence.
ACCESSION   DATLQL010000133 DATLQL010000000
VERSION     DATLQL010000133.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5414)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5414)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5414
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_918721"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..645
                     /gene="purQ"
                     /locus_tag="VNB68_01395"
     CDS             <1..645
                     /gene="purQ"
                     /locus_tag="VNB68_01395"
                     /inference="COORDINATES: protein motif:HMM:NF002957.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurQ"
                     /protein_id="HVD36037.1"
                     /translation="NNILKLKTEYLWHKTDSIHEFDAVILPGGFSYGDRLRAGIIAAR
                     SPIVRQVKKLAERGLPVLGICNGFQILVESGMLPGALLMNRGLNFVCKWTRMEVLNTS
                     TPFTGMLNNNQLINIPVAHGEGRYVIDQYTYESLKKNKQIVFKYKDENPNGSIGSIAG
                     ICNDNGNVLGMMPHPERASDQILMPHGLTNNAILIFQSLMLFLSRKKTVNKRRR"
     gene            652..2832
                     /gene="purL"
                     /locus_tag="VNB68_01400"
     CDS             652..2832
                     /gene="purL"
                     /locus_tag="VNB68_01400"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HVD36038.1"
                     /translation="MLSSTEDDYLTRQLGRTPNPLELDMTSTEWSEHCSYKSSKMLLK
                     LLPTKGTNVIIGPGYDAGVLDVGNGDVITVHIESHNHPSAVDPYGGAATGVGGVIRDI
                     ISMGTRPIGLLNALRFAPIENSNSSSSKWLFKNVVKGIADYGNCIGIPNVGGEVEFDK
                     SFREYCLVDVAAIGLGRKDEIIPNEAEHDDLIILAGNPTGRDGIHGASFASKLLVEDR
                     SAVQIPDPFLEKLLIEATREAVKNGCIKAMKDLGGGGLACCLSELSESVGMGFEVELS
                     SVHKKIPSLSPNEIMISESQERMIYIVSKKKQHEFTRILDRFGIAHSNIGIVKDHSDL
                     VILLNGRSIARLKSSLLANAPLVNRRSIMPSYLRKVKKYFVEPAEVKDYEKVILKILS
                     NPNIASKRWVYQQYDHEVGTRTVIKPGEGDASILRIDDDRFISIKLDGNSKHCYLDPY
                     EGTLGCLSEACRNIRCTGAQPIGIIDHLQFGNPERPSIYWTFKKSIEAIADFCKFMSI
                     PVVGGKVSFYNETRRGAIKPSPVIGAIGLIEGRANIVRSKLESGDSLFIIGLTGEEMG
                     GSEYFENYHQSVGGRVAALNLNMDLLHGNSILQLIHEKITNCVHDCSKGGLAISLIEM
                     ALQGNIGISIDLEKIPNRCKRLDYLLFAETNSRYLFATKKPSEAEVLLDKLGCSYSEI
                     GHAGDYDGTIEIRQSKKKTISIPLQKARSSYENLDRIMKGYYES"
     gene            2921..4354
                     /locus_tag="VNB68_01405"
     CDS             2921..4354
                     /locus_tag="VNB68_01405"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004044 - amidophosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HVD36039.1"
                     /translation="MVHENCGVVGIFSASGHNVIPYVIDSLRSLQHRGQESWGFAVPS
                     KPPFRNLGLVSSSAKLFRGLVKKYNSPAAIGHVRYSTLGKSNLENAQPLKIKDLCIAH
                     NGTIANAEELSGMVGGCTFTPQTMSDTLVAAQRLLTHLQVKGNIVEAMGILKDEMVGS
                     FCFTFLTGDGSVYAARDSRGFRPLVLGHIPESNTHMVASESCAIDSVGGNLICDVEPG
                     ELLKLGTDGVEHQKFANEKRHAHCSFEFTYFAHPASTVEGVIVYEARKRVGHYLARKY
                     PFPDADVVIPVPDSARPAALGYAQELGIPFEEGLLKDRYRKKGSMRSFIEPYQEDRVD
                     INKGIIPIKQVIEGKHVVVIDDSIVRGTSSESIMKTLRLAGASKISLIVTFPPIRFPC
                     YAGIDFPSQEELLAYQQVPVGSGEDLARKVANVIGADNVVYNDTSTLAEAIGIDEKDL
                     CFSCSTGDYTPLGIKPTFRTREQMKGV"
     gene            4431..4805
                     /locus_tag="VNB68_01410"
     CDS             4431..4805
                     /locus_tag="VNB68_01410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36040.1"
                     /translation="MQRINIIGAAALGAGAVAIVSYLMLTNLAREDYSLGVDAMKDEQ
                     SLFINTRVILTNTGKLPLTHITVNYGSKNETINIINPGEKIGLSPPEGSNLNIVKITG
                     DHGINITKDYRKPIKLPGMIGS"
     gene            complement(4864..5301)
                     /locus_tag="VNB68_01415"
     CDS             complement(4864..5301)
                     /locus_tag="VNB68_01415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36041.1"
                     /translation="MQANLICYGSLPNYLMPKPGFKSITVSENVYRRFFDAYAKNKKE
                     LEFKGITSFSGYLTSMMEDIMKRYEAKGLHAPFMEKILVGHNSVIIKDNKRNRVVEIT
                     LRDNELQCLLDDRNDCVHVGFVYSLPELYFMLKPKEIKRSTDL"
BASE COUNT         1696 a          968 c         1190 g         1560 t
ORIGIN      
        1 aacaacatac tgaaactcaa aacagaatat ttgtggcaca agactgattc tatacatgaa
       61 tttgacgccg ttattcttcc gggggggttt tcctatggtg atagactacg ggcaggtatt
      121 attgcggcac gtagtccgat tgtgagacag gttaaaaaat tggctgaaag aggtttgcca
      181 gtactgggaa tttgtaatgg ttttcaaata cttgtcgaat ctggaatgtt gccgggagcc
      241 ttgttgatga atagagggct aaactttgta tgtaagtgga ctagaatgga ggtattaaat
      301 acctcaacac cttttacggg catgctaaat aataatcaat tgattaacat acccgttgca
      361 catggtgagg ggcgttatgt gattgatcaa tacacatatg agagtttgaa gaaaaataaa
      421 caaatagtgt tcaagtataa agatgaaaat cccaacggtt ctattggatc tattgctgga
      481 atatgcaatg ataacggaaa cgttttgggt atgatgcctc atccagaaag ggcttcagat
      541 cagatactta tgcctcatgg attaacaaat aatgctatct taattttcca atcgttaatg
      601 ctttttctgt ctaggaaaaa aactgtaaac aagcggaggc gctaaaacga cgtgttatct
      661 tctaccgaag atgattatct gactaggcaa ctgggtagga cacccaaccc acttgaactt
      721 gatatgactt ctaccgaatg gtccgaacat tgttcttata agtcttccaa gatgttactt
      781 aaattattac caaccaaagg aactaacgtt ataataggac ctggatacga tgcaggcgtc
      841 ttggacgtag gcaatggaga tgttattact gtccatattg aaagtcacaa tcatccctca
      901 gcagttgatc cgtacggcgg cgccgcgact ggagttggag gcgttatacg tgatatcatt
      961 tccatgggga ctaggcctat aggtcttctt aatgcgcttc gatttgcgcc cattgaaaac
     1021 agcaactcgt ctagctcaaa atggctcttt aagaacgtgg ttaagggaat tgcggattat
     1081 ggcaattgta ttgggattcc taacgtaggt ggcgaagtcg aatttgacaa atcctttcgc
     1141 gagtactgcc ttgttgatgt ggctgcaata ggccttggta gaaaagatga aattattccc
     1201 aatgaagcag agcatgatga tctgattata cttgcaggaa atcctacggg gcgagacggc
     1261 attcacggtg cttcgtttgc atccaaattg ttagtagaag accgttctgc tgttcaaatc
     1321 cctgatcctt ttttagagaa attgttgatc gaagcaacaa gagaggcggt aaaaaacgga
     1381 tgcatcaaag ctatgaaaga tctaggaggt ggagggttgg catgctgtct ctcagaattg
     1441 tctgagagtg tgggaatggg tttcgaggtt gaattgtcgt cagttcacaa aaaaattccg
     1501 tctctttcac caaatgagat catgatctct gagtcacaag agcgaatgat ttacatagta
     1561 agcaaaaaga aacagcatga attcacacga atacttgatc gatttgggat tgcacattcg
     1621 aacataggga tagtgaagga tcactcagat cttgttattc tcttaaatgg aagatccatt
     1681 gctagactga aatcaagttt gcttgcgaat gcaccgttag tgaatcgtag atcaattatg
     1741 ccatcatatt tgagaaaggt caagaaatat tttgttgaac ccgccgaagt caaagactat
     1801 gagaaggtca tcttgaagat attgtcgaat cctaatattg caagcaaaag atgggtttat
     1861 cagcaatatg atcatgaggt gggaacaaga acagtcatta agccaggcga aggagatgcc
     1921 tcgattttaa ggattgatga cgaccgtttt atttctatta aattagatgg aaattcaaaa
     1981 cattgctatc ttgatcccta tgaaggaacg ttggggtgtt tatcggaagc ctgtagaaat
     2041 atcagatgta cgggagcaca accaattggg attatcgatc atttgcagtt tgggaatcct
     2101 gaacgaccaa gtatttattg gacttttaaa aaaagcatag aagccatagc cgacttttgc
     2161 aagtttatgt caattcctgt tgttgggggg aaagtaagct tctacaatga aacaagaagg
     2221 ggtgccataa aaccatctcc cgtgataggc gcaatcggac taattgaagg gagggctaat
     2281 atcgttagat ctaaattgga atctggagat tcgctgttca ttattgggtt aactggcgaa
     2341 gaaatgggcg gatctgaata tttcgaaaat tatcatcaga gtgtaggagg aagggttgcg
     2401 gcattaaatc tgaatatgga tctacttcac ggaaattcaa ttctacaatt gatccatgag
     2461 aaaattacaa actgtgtcca tgattgctct aaaggtggat tagccatatc tttgatagaa
     2521 atggcattgc agggaaatat cggcatttct attgacttgg aaaaaattcc caacaggtgc
     2581 aagcgattag attatttact attcgcagag accaattcca gatacttatt tgcaaccaag
     2641 aaaccatcgg aagctgaagt attacttgat aaactgggat gctcctattc ggaaatcgga
     2701 catgcaggag attatgatgg tactattgaa ataagacagt ccaaaaagaa gactattagt
     2761 ataccattgc aaaaagcccg ctctagttac gaaaatctag ataggattat gaaggggtac
     2821 tacgaaagct gatatcgaaa attgaaatcg tagtcattgt gcaacatctg gcaagtaact
     2881 cttatttgtc ccttttagtc aaacattcac tgtagctgag atggttcatg aaaattgtgg
     2941 ggttgtcgga atattttccg caagtggtca caatgtaatc ccatacgtta tagattccct
     3001 caggtcactg cagcatagag gtcaagaatc gtgggggttt gccgtaccat cgaagcctcc
     3061 cttcaggaat cttggtcttg tatcttcatc cgccaaacta ttcagggggc tagtaaaaaa
     3121 atataattct cccgcagcaa taggacatgt aagatattcc accttaggaa agagcaattt
     3181 ggaaaatgct caacctttaa agatcaaaga tttgtgtatc gcacataatg gaactattgc
     3241 taacgccgag gagttgtcag ggatggttgg aggttgcact tttactccac aaacaatgag
     3301 tgatacgctt gtagctgcac aaagactatt gacgcacctt caggtgaagg gaaacatcgt
     3361 tgaagctatg ggtatattga aggatgaaat ggtcggttct ttttgcttta catttcttac
     3421 tggcgatgga tcagtttatg ctgcccgtga tagccgaggg tttcgaccat tggtactggg
     3481 acatatacct gaatcaaaca ctcacatggt tgcatcagaa tcatgcgcga tagattcagt
     3541 tggtggcaat ttgatctgcg atgttgaacc cggtgagtta ttaaaactgg gaacagacgg
     3601 tgttgaacat cagaaattcg caaatgaaaa acgacacgca cactgctctt ttgaattcac
     3661 ctatttcgca catcctgcaa gcacagtaga aggagtaatt gtttatgaag ctagaaagag
     3721 agtcggtcac taccttgcac gcaagtatcc atttcccgat gcagacgtag ttatccctgt
     3781 tcccgattct gcgagaccgg cagcattggg gtatgcccag gaattgggca ttccttttga
     3841 agaagggttg ttgaaagaca gatatagaaa gaagggctca atgaggagct tcatagaacc
     3901 atatcaggaa gatcgtgtcg acataaataa aggaattatc cctattaaac aagtcattga
     3961 aggtaagcat gttgttgtta tagacgacag tatagttaga ggtacaagct ctgaatctat
     4021 tatgaagacg cttagactgg ctggggcatc aaagatttcc ttaatagtta catttccacc
     4081 aattcgtttt ccctgttatg caggaataga ttttccctca caagaagaac tcctagctta
     4141 ccaacaagta ccagttggtt caggagaaga tctggcgaga aaagttgcga atgtgattgg
     4201 agcagacaat gttgtctata atgacacatc aactctggct gaagcgatag ggatagatga
     4261 aaaagatctg tgcttttcat gctccaccgg agactatact cctttaggaa taaaaccgac
     4321 atttaggacc agggagcaga tgaagggagt ttagaaaatc cgcctgccta tatcttgtcc
     4381 ttaattttaa atgtccttaa ataagtcgaa ctaatgcaaa tacaatagat atgcaaagga
     4441 ttaacataat tggcgcagct gctttgggcg ccggtgcagt agctattgtg tcatatctaa
     4501 tgttaactaa tcttgcacga gaagattatt cgttgggagt tgatgccatg aaggacgaac
     4561 aatccctttt catcaatacc agagttatcc tgaccaatac aggtaagtta ccattaacac
     4621 atatcactgt taactacgga tctaagaatg aaacgatcaa cataataaat cctggggaaa
     4681 aaattggact ttctcctcct gaaggtagta atttgaatat tgtaaagata accggtgatc
     4741 atggtattaa cataactaaa gattatagga aacccatcaa attgccaggg atgatcggat
     4801 cttagatgga ataccgactt ccttaattta caaaaaaaag agtgatgaag tggcttgcat
     4861 ctgttacaaa tccgttgatc ttttgatctc ttttggttta agcataaaat acaactcagg
     4921 tagcgaatag acgaatccaa catggacaca atcgtttcta tcatcaagta aacattgtaa
     4981 ttcattgtca cgtaaagtaa tttccacaac tcgatttctt ttgttgtctt ttattataac
     5041 actattgtgg cctaccaaaa ttttctccat aaatggcgcg tgaaggccct ttgcttcata
     5101 tcttttcata atatcctcca tcatacttgt taaataacct gaaaaactag ttatgccctt
     5161 aaactcaagt tcctttttgt tctttgcgta tgcatcgaaa aatcttctgt aaacgttctc
     5221 acttaccgtt attgatttga aaccaggttt tggcattaga tagttcggta atgaaccgta
     5281 acatataaga tttgcttgca agataccaat accaattaat catgagtgca atgaatcgac
     5341 atgatgtctc taaaatagat ttgattcaaa tttaatgtga atggtcactg ctggattaga
     5401 atattttagt ccgg
//
LOCUS       DATLQL010000134         1499 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_32801, whole genome shotgun sequence.
ACCESSION   DATLQL010000134 DATLQL010000000
VERSION     DATLQL010000134.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1499)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1499)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1499
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32801"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            307..1332
                     /locus_tag="VNB68_01420"
     CDS             307..1332
                     /locus_tag="VNB68_01420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36042.1"
                     /translation="MSALVIFSSGFGRLAAADNNWYVGQGVKANMYVTYKIQSHDTNQ
                     GQPFTMTIYFKEYNSTGHYWVAPVYVNDQGAIINGTFHLSDLDLTALGSSQIPPSMSP
                     YRSAYESSLQWLAAFVAKPGQSLSAAYWGKIASIGGPPISPTGQEKVSVPAGSFDTTV
                     ISWHKGVDNKIWINKDMPYPVKAQTFADVTAGKPPVLYQFELLSTGQGQPPVPKSQPE
                     IPKPPITLQTGRGTYYIELLWQPPAIKSGTPTQFGILFMDSSQTTVPGVSYSFKVTGL
                     NNSVLEDLHDQKALDGTGTQTVKFDKPGPVDVVVSVDGVQGQNLGDFVERSDFNLIVV
                     PSGNSTQ"
BASE COUNT          471 a          293 c          297 g          438 t
ORIGIN      
        1 tttttcatga agtttgaaat tccttatcat acttctaact tcttaaatcg atttcgcgtc
       61 ctcgcctaca atatttaagt cagggctatc ggatttgacc acttttagaa tagctccggc
      121 tactagttca ggtgatatgg cattttgact catttttttt cataaatggt aactattaaa
      181 aactaagcag tccagtatac agataacata gttacctaag atatataatt ttgaacacca
      241 atatagaata caatgagtaa ggacaactta ccgtacttta gtaagatagt taaattaatt
      301 gtgattatga gcgcgcttgt aatttttagt tctggttttg gtcgattggc cgcggctgat
      361 aacaattggt acgttggcca aggagtaaaa gccaacatgt atgttacata taaaatacaa
      421 agccacgaca caaatcaggg gcagccattt acaatgacta tatattttaa agaatataac
      481 agtacaggtc attattgggt agctccggta tatgtcaatg accaaggagc aataataaac
      541 ggaacgttcc acttaagtga tttggatcta acagctttgg gtagttcgca gattccgcca
      601 tccatgtctc cttatagaag tgcctatgaa agttcactcc agtggcttgc agcctttgtt
      661 gcaaagccag gtcagtcgtt aagtgctgct tactggggaa agatagcatc aataggaggc
      721 ccgccaattt ctccaactgg gcaggaaaag gtttccgtgc ctgctggatc ttttgacact
      781 actgtcatat cgtggcacaa aggtgtcgat aacaaaattt ggataaataa agacatgcct
      841 tatccagtta aggcacagac tttcgctgat gtaactgcag gaaaacctcc tgttctgtac
      901 caattcgaac ttctatcaac cggacaaggt cagcctcctg taccgaaaag tcaacctgaa
      961 attccaaagc caccaataac tttgcaaact ggtcgtggca catactacat agagttactg
     1021 tggcaaccac cggcaataaa atctggaact ccaacacaat ttggtattct gtttatggac
     1081 agctctcaaa ctactgtccc aggtgttagt tacagtttca aagttactgg gctcaacaat
     1141 agcgtgctag aagatctaca tgatcaaaag gcacttgatg gcacgggaac ccaaacagtg
     1201 aagtttgata aacctggtcc agttgatgtc gtagtaagtg tagatggagt gcaaggacaa
     1261 aatttagggg actttgttga acgctcagac tttaatctaa ttgttgtacc ttcaggaaat
     1321 tcgacacaat aagtatcgca cctatctcat aactaattac agagtacgtg tacgtcagct
     1381 ttgaaattcc gatcgtgtga atatttaaga taatgtgatc gaatcctgca tattgaaggc
     1441 ttttgaaata aaaatagtta cagatagccg atcgaatatt ctacagcata ttttaacta
//
LOCUS       DATLQL010000135         1344 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1986843, whole genome shotgun sequence.
ACCESSION   DATLQL010000135 DATLQL010000000
VERSION     DATLQL010000135.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1344)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1344)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1344
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1986843"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..398
                     /locus_tag="VNB68_01425"
     CDS             <1..398
                     /locus_tag="VNB68_01425"
                     /EC_number="2.7.8.26"
                     /inference="COORDINATES: protein motif:HMM:NF014685.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008818 - cobalamin 5'-phosphate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0051073 - adenosylcobinamide-GDP
                     ribazoletransferase activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="adenosylcobinamide-GDP ribazoletransferase"
                     /protein_id="HVD36043.1"
                     /translation="VLYITGMIIAISSFSYGFKLMTGIIVAEVIAKYVMALEAFLGRS
                     AWQGLSSPFTAAMKDKRKMLSATALMFGAIWISGYVGFLSLGISVALGFLIQHIANRS
                     FGGISGDVIGASNEITRLASLIVLSSVTI"
     gene            431..1033
                     /locus_tag="VNB68_01430"
     CDS             431..1033
                     /locus_tag="VNB68_01430"
                     /inference="COORDINATES: protein motif:HMM:NF024214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NTP transferase domain-containing protein"
                     /protein_id="HVD36044.1"
                     /translation="MCGGRGTRMGKSTEEKPLQKLKGRMLIEYVADALVGSNIFERIV
                     GVTSSNTPNTNSFLRHHLYYKAGLIEVFKTRSDGYPTDLSKVVQTLKPRHVFVVPADL
                     PLLRSKIVRKIVFNAIRLNHPCVSIVLEKSFVENMGMKPSVVVPIGTKKYCHSGITVI
                     DSCKFAPNSYVNEVYIPMNEKQLAVNINSRNELRAAEKLF"
     gene            complement(1248..1334)
                     /locus_tag="VNB68_01435"
     CDS             complement(1248..1334)
                     /locus_tag="VNB68_01435"
                     /inference="COORDINATES: protein motif:HMM:NF013128.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36045.1"
                     /translation="MTLRYTCKNCQRKTMKQGMRLRKLEIEA"
BASE COUNT          405 a          257 c          265 g          417 t
ORIGIN      
        1 ttgttttata tattactggc atgattattg caatttcgag cttcagttat ggctttaagc
       61 ttatgactgg cattatagta gccgaagtaa tcgcaaaata tgtcatggcc ttagaagcct
      121 ttttaggacg gtctgcgtgg caaggtttaa gctccccatt tacggcagcg atgaaagata
      181 aaagaaagat gctgtctgct acggctttaa tgtttggagc tatttggatt tctggttacg
      241 taggctttct gtcattaggt atatcagttg ccttaggctt tttaatccag catatagcaa
      301 acaggagttt tggtggcata tcgggagacg taattggtgc ttctaacgaa ataacccgac
      361 tggcgtcgtt aatcgttctg tcttccgtaa caatatgaat aatcatagca tgcatgtaac
      421 tgctatcata atgtgcggag gaagagggac tcgtatgggt aaatctactg aggaaaaacc
      481 gttacaaaaa cttaaaggaa gaatgctaat tgaatatgtg gctgatgcat tagtaggctc
      541 caacatattt gagaggatag ttggtgtaac cagctccaac acccccaata ccaattcatt
      601 ccttaggcac catctatatt acaaagcagg tctaatcgaa gtatttaaga cgcgatcaga
      661 tgggtatcca acagacctgt ctaaagtagt ccaaacgcta aagccaagac atgtctttgt
      721 tgttcctgca gacctcccat tattacgatc caaaatagtt agaaagatag tcttcaacgc
      781 tatcagacta aatcacccat gcgtatctat cgtgttagaa aagagctttg tagagaacat
      841 gggcatgaag cccagtgtag ttgtgcctat cggtactaaa aaatactgcc attcaggtat
      901 aactgtgatt gattcttgta aatttgcacc aaatagttac gttaacgaag tttatattcc
      961 aatgaacgag aagcagttag cagtaaacat aaattcaaga aatgaactga gggcagcaga
     1021 aaaacttttc tgactctaat ctagtgtctt taatactttt cctagcataa tagctctggc
     1081 gcccgtcggt tggacaagaa gcttattaca acatctacag taaatggtac tagaactgtg
     1141 actgtagatt atcctctctt ctttacaatc agaacattgg ctagatagaa agttactcgc
     1201 tggctttgga atcattatat ttttcttacg caatcttacc accctaatta tgcctctatc
     1261 tccaacttgc gtaatctcat tccctgtttc atagtctttc tctgacaatt tttacatgta
     1321 tagcgcaaag taattttttt agta
//
LOCUS       DATLQL010000136         1395 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_920134, whole genome shotgun sequence.
ACCESSION   DATLQL010000136 DATLQL010000000
VERSION     DATLQL010000136.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1395)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1395)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1395
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_920134"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(241..>1395)
                     /locus_tag="VNB68_01440"
     CDS             complement(241..>1395)
                     /locus_tag="VNB68_01440"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HVD36046.1"
                     /translation="FINYNQVLDNLTKNLLNGKPGSAIYDYGRGERINTNYPIFVQGQ
                     PSYFIQVVTPTNVIFSNIGETLFAERLKSYALLVGTLIAVAVLIIFLVKWSSTMEKEV
                     VKRTRELKESNLKLDTMTKDLKNSNISLQEAYQQLKENEKIQKDFINVAAHELRTPIQ
                     PILGLSGILHSELRNPSQKEMINIVMRNAKRLQRLSQDILDASKIESGLLKLHRERFD
                     INEKIKTVISDIENGPDVYMKNKEIKIVFEPKESLYVYADKERIYQVIFNLLKNALKF
                     TETGTITISTEMQRNDSRDHGKVVVTIIDTGKGIDSDVIPRLFSKFVSKSDAGTGLGL
                     FISKNIIESHGGKMWAQNNSNGIGAIFSFNLPAFNFDSTSYTPSGDVSQN"
BASE COUNT          395 a          279 c          262 g          459 t
ORIGIN      
        1 atctcaggac tctggaaaga aaaagatcta gatcagctac tgcatcgctg attgagcaga
       61 gaataaggcc attcgctaat aattagggct acttgacaac caaggtaaat tcatcttacg
      121 gttgattagt ccgccgaata aacgtaattc atagcctccc tcacattgtt cagttatctt
      181 atgactagaa tgcccaaagt gttgagggct ccctacactt tggtttgaac gccacacagg
      241 ttagttttga ctgacatcac cagacggtgt ataactagtg gaatcgaaat taaaggcagg
      301 tagattgaag gaaaagatag cccctatccc gtttgaatta ttttgagccc acatttttcc
      361 accatgagac tctatgatat tttttgaaat aaaaagccca agaccagtcc ccgcgtccga
      421 cttcgaaaca aactttgaga aaagtcgtgg tatgacatca gaatcaatac ctttgccagt
      481 atctattatg gtaacaacaa ctttgccatg atctctactg tcattgcgct gcatttccgt
      541 ggatattgta atggtaccag tttcagtaaa ctttagtgcg ttctttagca agttaaaaat
      601 tacctgataa atcctttctt tgtctgcata tacataaagg gattctttgg gttcaaaaac
      661 aatttttatt tccttattct tcatatatac gtcgggacca ttctcaatat cacttatgac
      721 agttttaatt ttctcattaa tgtcaaatcg ttccctatgc agtttcaaca ggccactttc
      781 aatttttgaa gcatccaaaa tatcttgaga gagcctttgc agccttttcg catttctcat
      841 aacaatattt atcatctcct tctgggaagg atttcttaat tcggagtgaa gtatacctga
      901 caggccaagt atgggctgga taggagtacg taattcatgg gcagcgacat tgataaagtc
      961 tttttgaatc ttttcattct cttttagttg ttggtaagcc tcttgcagtg aaatgttgga
     1021 atttttaagg tctttggtca tcgtgtcaag tttgaggtta gattccttca actctcgagt
     1081 ccttttgacg acctcctttt ccatggtgct actccatttg accaggaata ttattagcac
     1141 tgcaacggca atcagggtac cgacaagtag cgcataactt ttgagtctct ctgcgaaaag
     1201 agtctcgcca atgtttgaaa aaattacgtt ggttggtgtc actacctgga taaagtaact
     1261 gggctgacct tgcacaaata ttggatagtt agtattgatc ctttcacctc ttccgtaatc
     1321 atagatggca gatcctggtt taccatttaa tagatttttt gtcaagttgt ctaagacctg
     1381 attataattg ataaa
//
LOCUS       DATLQL010000137         1116 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2342931, whole genome shotgun sequence.
ACCESSION   DATLQL010000137 DATLQL010000000
VERSION     DATLQL010000137.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1116)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1116)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1116
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2342931"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..762
                     /gene="cofE"
                     /locus_tag="VNB68_01445"
     CDS             <1..762
                     /gene="cofE"
                     /locus_tag="VNB68_01445"
                     /EC_number="6.3.2.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043773 - coenzyme F420-0 gamma-glutamyl
                     ligase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="coenzyme F420-0:L-glutamate ligase"
                     /protein_id="HVD36047.1"
                     /translation="VYQKIEIIPIRIDKKITQGDKLSKIVLESIRDVGETLNDRDIVV
                     VAQKVVSKAEGQTINLDSIVPSELSLKLAKRNSKDPRVMELILRESKAVIKLSDGVII
                     VETKHGFICANAGIDQSNIQEGGNSATALPKDPDLSARKLRGYFKRNAGKDVAVIITD
                     TFGRPFREGQTNVAIGIAGLDPLKSYIGMRDMYGRELKVTEIAVVDEIASAAELVMGK
                     SEGIPVAIVRGYRYLCTEISSVSKLLRSKEKDLFR"
     gene            833..1081
                     /locus_tag="VNB68_01450"
     CDS             833..1081
                     /locus_tag="VNB68_01450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HVD36048.1"
                     /translation="MSAASNGGPTKTIDVRGLFCPEPVFRTKVEIARLGIGDTVRIIS
                     DDPDSEEDISRWVNRNGHELLSINKSQSDLEFVIKKAK"
BASE COUNT          386 a          190 c          251 g          289 t
ORIGIN      
        1 gtgtaccaga aaattgagat tataccaatt cgcattgata aaaaaattac ccaaggagat
       61 aaactgagca aaatagtttt agaatcaata agagatgttg gtgagacgct aaatgaccgg
      121 gatattgtag tcgtagctca gaaagttgtt tccaaagcag aaggccagac aataaatctt
      181 gactccatag tcccctctga attatccctc aaactggcta agaggaacag caaagatcct
      241 agagttatgg agcttatatt gagagaatcc aaagctgtga taaagctatc agatggtgtt
      301 ataatagtag aaaccaagca tgggttcatt tgtgctaatg cagggataga tcaaagcaac
      361 atccaagaag gaggtaattc tgcgactgca ttaccaaagg atcccgacct ttctgctaga
      421 aaactgagag gatacttcaa aaggaatgcc ggaaaagacg ttgcagtgat catcactgac
      481 acgttcggaa gaccctttag ggagggacaa accaatgtag ctattggcat agcaggtttg
      541 gatcctttaa agagctatat tggaatgcga gatatgtacg gtagggagct aaaggttacg
      601 gaaattgctg ttgtagatga aattgcttca gctgccgagc tagttatggg taaatcagaa
      661 ggaattcctg tagcaatagt tagaggatat agatatctat gtactgaaat ttcgtcagtt
      721 tccaagctcc taagatcaaa agaaaaggat cttttcaggt aaccaataat cgattgagaa
      781 caacttacta aacatttaat ataatgataa tgtcatttta tgctgttact ttatgagtgc
      841 tgcaagtaat ggcggtccga ccaagactat cgatgtccga gggctcttct gtcctgaacc
      901 tgtttttcgg accaaggttg aaatcgcaag attagggatt ggagataccg taagaatcat
      961 ttctgacgac ccagactcag aagaggacat atcgagatgg gttaatagga atggacacga
     1021 actactatct attaataaat ctcaaagcga tcttgaattt gtaataaaaa aggctaaata
     1081 attatgacga cagtggcaag accagacgta acccaa
//
LOCUS       DATLQL010000138         1030 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_389888, whole genome shotgun sequence.
ACCESSION   DATLQL010000138 DATLQL010000000
VERSION     DATLQL010000138.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1030)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1030)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1030
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_389888"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(285..>1030)
                     /locus_tag="VNB68_01455"
     CDS             complement(285..>1030)
                     /locus_tag="VNB68_01455"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009190 - cyclic nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0035556 - intracellular signal transduction
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HVD36049.1"
                     /translation="STISSNCTMCGKPIRGTPLFDSEFPFDSIMCMETYRKLTMLYGS
                     DISETGLPSQVVNMNFFFIDIVGLSNPSLSVKKQIDKIEILNKLIGLCDAFAKAKEKK
                     IVLPTGDGMAIGFFMNPESPLQLAVQLHSKLRTYNRGKSYEDLLGVRIGLGSGPVFIV
                     NDIKGNQNVWGPGIILARRVMDIGDNSHILLSNTMAESLIALKDEYKMMLKPIGDYQI
                     KHGQTLHLYSAYSQEFGNAERPAKMLSQH"
BASE COUNT          308 a          203 c          187 g          332 t
ORIGIN      
        1 aagactgtat agtctataag tttagatgaa tattgattat gatcttcctg atgtatatat
       61 aaaagttata actggttttt attttctcca accgtgcaac tctaatcatg gaacacagta
      121 ttgaataaac aactcttagc cgcaaagaaa tgagtatacg ttccaaatga tcttacctat
      181 agaacaagca agcaaggata tgaaatcctt caaattcgcg caagcgaaga agcaacagat
      241 gaatcttaat agaaaccttc agtgtttatg cctacattct gattttagtg ttgcgacagc
      301 atttttgctg gtcgttcagc atttccaaat tcttgggaat atgctgaata caggtggagt
      361 gtctgtccat gttttatttg gtaatctcca ataggtttca acatcatctt atactcgtct
      421 tttaatgcaa tcagagactc cgccatggta tttgatagca aaatatgcga gttgtcgcct
      481 atatccataa cacgacgagc aagtatgatt cccggccccc atacgttctg gttgcccttt
      541 atgtcattga ctatgaaaac tggaccagac cctagaccta tgcgtactcc tagtaaatct
      601 tcataactct tgccacggtt gtatgtccta agttttgagt gaagttgtac agcaagctga
      661 agaggtgatt ccggattcat aaagaaccct attgccatgc catcacctgt cggcaaaaca
      721 atcttctttt ccttcgcctt tgcaaaagca tcacacaatc ctataagttt attgagaatt
      781 tcgatcttgt ctatctgttt ctttacagat agtgaaggat tagataggcc tactatatct
      841 atgaagaaga agttcatatt tacaacttgt gatggcaaac ctgtctcaga aatgtcagag
      901 ccgtacagca ttgtaagctt cctgtatgtt tccatacaca ttatgctgtc aaatgggaat
      961 tcagaatcaa ataatggtgt tcctctaatt ggttttccgc acatagtgca attagatgaa
     1021 attgttgatt
//
LOCUS       DATLQL010000139         2389 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1988483, whole genome shotgun sequence.
ACCESSION   DATLQL010000139 DATLQL010000000
VERSION     DATLQL010000139.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2389)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2389)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2389
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1988483"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..576)
                     /locus_tag="VNB68_01460"
     CDS             complement(<1..576)
                     /locus_tag="VNB68_01460"
                     /inference="COORDINATES: protein motif:HMM:NF013862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HVD36050.1"
                     /translation="MEIDRNEEVKQEELPVETVLVLQGGGSLGAYECGVYKTLVKHNI
                     KFDIVAGTSIGALNAAIIAAAHNHDSVENSAKELENFWLDLAETLIPLPQQFSSLYFT
                     DEMRAVLASIYSAVYGNPKAFLPRWIVSGFFNYLQPFRPLPYPLFDITPLKKTLSRYV
                     AFSNLGDPARPRLIVSSTNIQTSEPVVFDSKH"
     gene            complement(895..>2389)
                     /locus_tag="VNB68_01465"
     CDS             complement(895..>2389)
                     /locus_tag="VNB68_01465"
                     /inference="COORDINATES: protein motif:HMM:NF013460.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HVD36051.1"
                     /translation="RLIEGVVVLMVFDDFPFWLRFAHFINIIFITLLIRSGIEILSAL
                     PKLYFNDHAKPGSEWIKFTKKKLPKDRLWISLDEEESFSSWIALPGHRNLGLGRHWHF
                     FSIIFWIANGAAYYILLFTSDEWQRLIPTSWNIFPQAFHTAMMYASFHFPPPGDPYNP
                     IQQLSYLGVVFLLGPFMIATGAAMSPAIDARFPWYPKMFRGRQVARSLHFLGMIAFVL
                     FIVVHLTMVTIERFPENMGNIALGQGRGTSLGVAIGLFSLFVIAVIIVHVWATGSSLH
                     KPRRIQNILDVVILPAKWVLFRKAVSKQQFHKSEISPFFRVNGYPPDTKEYRDLLANN
                     FATWKLKVYGVVENPLDLSLADMHAMRKQTQITEHYCIQGWTAVGEWTGVPMRYIIEL
                     CKPLLPLARYVIFRSYQYTDGDEFYEVLDLEIVKHPQTILAIEMNGEPLDIGHGAPLR
                     LRVETQLGYKMVKWIRAIEFVSDYKNIGMGLGGHREDHMYYSPRAGI"
BASE COUNT          746 a          481 c          434 g          728 t
ORIGIN      
        1 atgtttgcta tcaaatacca ctggttcact tgtttgtata tttgtagaag atacaattaa
       61 tctcggtcta gccggatctc ctaagttgct aaaagcgaca taacggctca gtgtcttttt
      121 aagaggtgtt atatcaaaaa gtggataagg caatggtcta aatggttgga ggtaattgaa
      181 aaatcctgat acaatccatc ttggcaagaa agccttagga ttcccataca cggcagaata
      241 tatcgatgct aaaacagccc tcatctcgtc tgtaaaatat aatgatgaaa attgttgtgg
      301 taagggtata agagtttctg cgagatctaa ccaaaaattc tcaagttctt ttgcagaatt
      361 ttcaacacta tcatgattat gagcagcagc tattattgct gcattaagag ctcctattga
      421 agtacctgcc acaatatcga attttatgtt atgttttacg agagttttat atactccaca
      481 ttcatatgcg ccaagcgaac ctccgccttg caatacaaga actgtttcta ctggtaattc
      541 ttcttgtttt acttcttcat ttctgtcgat ttccatattg tatgcattgt tatatcagta
      601 atctgtttat taatattgaa cagagatctt ttgcattcaa tgatattata tgaaaaacgt
      661 attatgtacg ataattcttc atttcataca ggaggctgaa accgttcccc tttcttaatt
      721 tgttagtgta gaaatcatct actttttcat tactgctaac tacaatgaat tgataaaatt
      781 aacaaaatta ctaatatgag aatatatgtc atctctcaag ctttttgaat tttggcaaat
      841 tcatagccgt ttcggctaat gccagccacc tacgccaaag ctccacatat tattttatat
      901 cccagcacgt ggactatagt acatatggtc ctcgcgatga cctcccagtc ccatgccaat
      961 attcttataa tctgaaacaa actcaatagc tcgaatccat ttcaccattt tgtaacccaa
     1021 ctgggtttca acccttaacc gcagaggggc accgtgaccg atatccaagg gctcaccatt
     1081 catttcaatg gccaagattg tctggggatg tttaacaatt tctagatcta atacttcata
     1141 gaattcatct ccatctgtgt attgatagga tcggaatata acataacggg caagtggtaa
     1201 tagtggttta cagagttcaa taatatatct cataggtaca ccagtccatt ctcctacggc
     1261 tgtccatcct tgaatgcagt agtgttcggt aatttgtgtt tgtttgcgca tggcatgcat
     1321 atctgccagt gaaaggtcaa gtggattttc aactacccca tagactttga gcttccaagt
     1381 ggcaaaatta ttagctagaa ggtccctgta ttcttttgta tcaggaggat aaccgtttac
     1441 acggaagaat ggcgagattt ctgatttatg aaattgttgt ttcgatacag cctttctgaa
     1501 cagaacccac ttagctggca gtataactac atctaatata ttttgtattc gacgtggctt
     1561 atgcagcgaa gatcctgtag cccaaacatg tacaattata acagcgataa caaaaagtga
     1621 aaataatcct atggcaactc ctaggctagt acccctaccc tgaccaagtg caatatttcc
     1681 catattttct ggaaagcgtt ctattgtgac catagttaaa tgaactacaa tgaataagac
     1741 aaaagcaatc attcccagaa agtgaaggct gcgtgccact tggcgtcctc taaacatttt
     1801 gggataccaa ggaaacctag catcgattgc tggcgacata gcggctcctg tagcaatcat
     1861 aaaaggacca agcagaaaaa caactccaag gtatgaaagt tgttgtatag gattgtaagg
     1921 gtccccagga ggcggaaagt gaaaactcgc atacatcata gctgtatgga aagcttgtgg
     1981 aaaaatattc caagaggttg gaattagacg ctgccactca tcacttgtaa aaagtagaat
     2041 ataataggct gcaccattag ctatccagaa tataatagaa aagaagtgcc aatgccgtcc
     2101 cagtccgaga tttctgtgtc ctggcaaagc tatccaagaa gaaaatgatt cttcctcatc
     2161 taatgagatc cagagcctat cttttggcaa tttctttttt gtaaatttga tccactcact
     2221 tccaggcttt gcatgatcat taaaatacag ctttggaaga gcgctaagta tctctatgcc
     2281 actccgaatt aaaagtgtaa tgaatattat attgataaaa tgtgcgaagc gcagccagaa
     2341 tgggaaatca tcaaacacca taagaacaac tactccctct atcaatctc
//
LOCUS       DATLQL010000140         1183 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_212125, whole genome shotgun sequence.
ACCESSION   DATLQL010000140 DATLQL010000000
VERSION     DATLQL010000140.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1183)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1183)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1183
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_212125"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(74..>1183)
                     /locus_tag="VNB68_01470"
     CDS             complement(74..>1183)
                     /locus_tag="VNB68_01470"
                     /inference="COORDINATES: protein motif:HMM:NF025042.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4147 domain-containing protein"
                     /protein_id="HVD36052.1"
                     /translation="IVPYNSRYSGSPISIREASHPIPDKAAVRGTEEIINILKRTTES
                     DLVIALVSGGGSALMTLPRKGISLLEKQSITKQLLSSGASIKEMNVVRKHLSQVKGGQ
                     LISSLKSGTTVISLIISDVVGDRLDIVASGPTVPDASTFKDARMILKKYDIWKGSTDR
                     LSSSVKKIITNGIKGIIKDTPKPRDPSFGNVHNILIGNNALVCSYAARYFETKRLRVK
                     SLGSHFQGEARGFGIYVAKLASSFAGPRKPSVFLLGGETTVRLNKTGQNGRGGRNQEA
                     ALVAAINSHFGKNSDITICCIGTDGIDGNSRAAGAVVTPRTISLIAEKRIQLKSYLEK
                     HDSYNAFKKLHSNIMTGRTGTNLNDITIVCNLTQK"
BASE COUNT          313 a          242 c          221 g          407 t
ORIGIN      
        1 gtcgtcatct caagaagtag aatttttttc tctgtcaata ttgtggaaac atcaaagtgc
       61 ggatagattc attttatttc tgtgtcaagt tgcaaactat cgtaatgtca tttagattgg
      121 taccagttct acctgtcatg atgtttgaat gcaatttctt aaaagcatta tagctatcgt
      181 gtttctcaag gtagcttttc aattgaattc ttttttctgc gatcaatgag atggttctag
      241 gtgtcacaac tgcccctgcg gctcttgaat taccatctat tccatcagta cctatacagc
      301 aaatagtaat atcactattt tttccgaaat gtgagttgat ggcagctacg agagctgctt
      361 cctgattcct tcctcctctt ccattctgtc ctgttttatt taaccttaca gttgtttcgc
      421 cacctaaaag aaatacagat ggcttacgag gccctgcaaa actggaggct aattttgcaa
      481 cgtatattcc aaagcctcgt gcttcacctt ggaaatgtga tcccaggctt ttgaccctta
      541 gtctcttagt ttcaaagtac ctagctgcat aactacacac taaagcattg ttacctatca
      601 aaatattgtg tacgttacca aaagaaggat ctctaggttt aggagtgtct ttgataatac
      661 ctttgattcc attagtgata atttttttga cagatgagga tagtctgtcg gtacttcctt
      721 tccagatatc atattttttt aaaatcattc gtgcatcctt gaatgtcgac gcgtcaggaa
      781 cggttggtcc agatgcaaca atgtcgagcc tgtctcctac cacgtctgag attattagtg
      841 agattacagt agttccgctt ttaagtgaac ttatcaattg gccccctttc acctgtgata
      901 ggtgtttacg aacgacgttc atttctttaa tactagcgcc cgaagacaaa agttgtttgg
      961 taatagattg tttttctaac aacgatatac cttttcgggg tagcgtcatc aaggcagaac
     1021 caccacctga aactaatgct ataacgagat ctgattcagt agttcttttt aggatgttga
     1081 ttatctcttc ggtacctctg acagcagctt tatcaggtat tggatgtgac gcttccctta
     1141 ttgaaattgg cgacccgctg tatctagaat tataaggaac aat
//
LOCUS       DATLQL010000141         1340 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_746877, whole genome shotgun sequence.
ACCESSION   DATLQL010000141 DATLQL010000000
VERSION     DATLQL010000141.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1340)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1340)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1340
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_746877"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1340
                     /locus_tag="VNB68_01475"
     CDS             <1..>1340
                     /locus_tag="VNB68_01475"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HVD36053.1"
                     /translation="LVLFFVAFLLICSADYKIHGQNATIAGPEVTDSNLKVELVARNL
                     DFPTAIDFLGNDDLLLTEKNTGNVYEIINGNITAPLIHLNVTTRDERGLLGIAISGNS
                     TNGSKDNTLVYLYYTLCGKDKATDSEVSQQFLNGEKVGQPTVKGGSKKCGNYVYRYEL
                     DAKNNKLVAPKLIASLPGLPGPSHNGGKLLMDKEKNLFVTIGDLQTTKFNQNKTGYDT
                     KAQNIINGTFPDGRGGILRITQDGKPVRNGTLGVEYPLNLYYAYGVKNSFGIGLDPVT
                     DNLWDTENGPQFGDEINLVKPGFNSGWEKVQGIWKLNQTREKDGIFDNSTKGVEFVDF
                     SSKGKYSDPEFVWDKPVAPTALAFLDSDKLGQQYTNDMFVGSAKKGTLFHFDLKPDRE
                     SLDLIGDLADLVYSKKEDSSKIVFGENFGVVTDLKVGPDGNLYVVSGSGETGTGA"
BASE COUNT          451 a          220 c          289 g          380 t
ORIGIN      
        1 ttagttttat tctttgtcgc gtttttgcta atttgttccg cagactacaa aattcatggt
       61 caaaacgcga caattgctgg acccgaagta accgattcca atcttaaggt agagttagtt
      121 gctcgcaacc ttgatttccc aaccgctatt gactttttag gaaatgatga tcttttgcta
      181 acagagaaaa atactggcaa tgtatatgaa ataattaatg gcaacattac tgcgccttta
      241 attcatctaa atgtgaccac cagagacgaa cgtggattac tgggtatagc tatatcagga
      301 aatagtacta acggttcaaa agacaataca ttggtttatc tttactatac cctatgtgga
      361 aaagataaag ctaccgattc agaagtaagt cagcagtttt tgaatggtga aaaggtaggt
      421 caaccaacag taaaaggtgg ttctaagaag tgtggcaatt atgtatacag atatgaactt
      481 gatgcaaaaa acaataaact cgtagctccc aaattaattg caagtctacc tggattgcca
      541 ggtccaagtc ataacggagg caaacttttg atggataagg agaaaaatct ttttgttact
      601 atcggtgatc tacaaacaac taaatttaat caaaacaaga caggttatga tactaaagca
      661 cagaatatca taaatggcac ttttcctgac ggtcgtggag gaatacttcg aataacccaa
      721 gatggcaaac cagttagaaa tggaacactt ggtgttgaat atccccttaa tctatactat
      781 gcgtatggag taaaaaatag ttttggaata ggtcttgatc cagtaactga taatttatgg
      841 gatacagaga atggccctca gtttggagat gaaataaacc ttgttaagcc aggtttcaat
      901 agtggatggg aaaaagttca gggaatttgg aaattaaacc agacaagaga gaaagatggc
      961 atttttgaca attccaccaa aggagtagaa tttgttgact tcagcagtaa aggaaaatac
     1021 agcgatccag agtttgtgtg ggacaaacca gtggctccaa ctgcacttgc atttctagac
     1081 tctgataaac taggtcagca gtatacaaat gatatgtttg tgggttccgc aaaaaaagga
     1141 acgctttttc attttgatct caaacccgat agagagtcac tagatttaat cggtgatctt
     1201 gcagatttgg tatatagcaa gaaagaggac tctagcaaaa tagtgtttgg tgaaaatttt
     1261 ggagttgtca ctgatttaaa agttgggcct gacggcaatt tgtatgtggt ttcaggctcc
     1321 ggagaaactg gcacgggagc
//
LOCUS       DATLQL010000142         2584 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1634087, whole genome shotgun sequence.
ACCESSION   DATLQL010000142 DATLQL010000000
VERSION     DATLQL010000142.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2584)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2584)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2584
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1634087"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            160..1347
                     /gene="mpgS"
                     /locus_tag="VNB68_01480"
     CDS             160..1347
                     /gene="mpgS"
                     /locus_tag="VNB68_01480"
                     /EC_number="2.4.1.217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050504 - mannosyl-3-phosphoglycerate
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mannosyl-3-phosphoglycerate synthase"
                     /protein_id="HVD36054.1"
                     /translation="MMKLDVPRFTERFGTISMHGVQRVYELDSGYKTGKSKSEAIRTI
                     DNEVISEIEGKMAIVIPIKGERLKLLEGVLSGIPHDCLTIIVSNSPRQPIDRYKLERE
                     AIEQFNRFAEKNSIIVHQRDPGVSEALREVGYADLLSNDGTVRNGKAEGMIIGMLLAK
                     MSGKDYVGFIDADNYVPGAVNEYVKIFASGIAMSTTPYTMVRVSWIYKPKVSDNGVYF
                     SKWGRVSEITNQYLNSVISYYTGFETEVMRTGNSGEHCLSMKLAESLTYSSGFSVEPY
                     EIINLLEEFGGIIPTEHQDAMDKGIEVMQIETRNPHFHEEKGDAHVRQMFLEALGCIF
                     HSKICHPELREKITSELQTRGLLEAEKEPPELQRIRPFKDIDVALFSKILHEKSTSYL
                     YCE"
     gene            complement(1500..2222)
                     /locus_tag="VNB68_01485"
     CDS             complement(1500..2222)
                     /locus_tag="VNB68_01485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36055.1"
                     /translation="MPQKLYGLAQLVIILTVICPIFFVYGLYLVVKFSIVTTPNNPSL
                     LSSVARIFKKRSYFKLLIISSILYGLFFAYLSRILIYIPTEVSLDDTINFPSFALTLC
                     CGSPGYFPMATIRLTENLSVLLIPLNLILAVSVSLLVGINIVLNVHAFQLARSQARRK
                     LSAVSSMGAFSGLFIGCPTCAGGLFSVLLGFGTGTAVSILAPFQTLFILMSLPVLVLT
                     SILLVRNVRNNERCESKDRQAG"
BASE COUNT          860 a          487 c          523 g          714 t
ORIGIN      
        1 tagaaacgat cgttatcttt gcgtttctct tgacaatatt gcgtcttacg agaggactgt
       61 ctcaaaaata attgaaagca tttgaaaccg atccatgcct atttatcatg gactatggaa
      121 tcccatttgt aataaatatg gcttacatag ccatcttcga tgatgaagct tgacgtacct
      181 agattcacgg aacgatttgg caccataagt atgcatggag ttcagagagt ttatgaactt
      241 gactcgggtt ataaaactgg aaaaagtaaa tcagaagcca tacgaacgat agataacgaa
      301 gtcatttctg agattgaggg aaagatggct atagtaattc ccattaaagg agaacgttta
      361 aaactcttgg aaggtgtttt gagtggaatt ccccacgatt gtttgactat catcgtttca
      421 aacagtccga ggcagccgat agatcgttat aaacttgagc gtgaagctat agaacaattt
      481 aatagatttg cggagaaaaa ttccataata gtccatcaaa gagaccctgg tgtttctgag
      541 gccctgcgcg aagtaggata tgccgactta ctttcgaacg acggaacagt aaggaatggc
      601 aaggcagaag gaatgattat tggcatgctt ctggccaaga tgtctgggaa ggattacgtt
      661 ggatttattg atgctgacaa ttatgttcca ggcgctgtaa atgaatacgt aaagattttt
      721 gcatcaggta tcgccatgtc aaccacacct tacacgatgg ttagggtatc atggatttac
      781 aaacctaagg tctcagataa tggagtatac ttctctaaat gggggagagt gtcagaaatt
      841 accaaccagt atctaaactc tgtaatctcc tattatactg gctttgaaac cgaagtcatg
      901 cgcactggca attcaggaga acattgtctc tctatgaagt tggctgaatc actgacttac
      961 tcttcagggt tttccgtaga accatatgaa ataataaatt tattggaaga atttggcggc
     1021 attattccaa ctgaacacca agacgccatg gataaaggca ttgaagtaat gcagatagaa
     1081 actcgaaatc cccactttca cgaagagaaa ggtgatgccc atgttaggca gatgttcctg
     1141 gaggctttag gttgcatttt tcatagtaaa atttgtcacc ctgaactgcg agaaaaaatt
     1201 acgtctgaat tgcaaactag agggctgctc gaggccgaga aagaaccgcc tgagctccaa
     1261 agaatccggc cttttaaaga tattgatgtc gccttattta gcaaaatcct tcatgaaaag
     1321 tcaacaagct atctctactg tgaatgaatt atttttctca atctacaaaa gattaggatt
     1381 ccgtcattat tccgatgtct ggaatggctt accttgaata ttcatagtaa ctaaacttaa
     1441 tatcttcagc tctagaaaca tgatcctatc tcggctattt gtcctcggtt tgataatcac
     1501 taacctgctt gcctatcctt tgattcacat ctttcattat ttctgacatt gcgtacgaga
     1561 agaatggagg tcaatacaag tactggcaaa ctcatcaaaa taaacagcgt ttgaaaagga
     1621 gccaagattg aaactgcagt acctgtacca aatcccaaaa gtaccgagaa caaacctcca
     1681 gcacaagttg gacatcctat gaacaacccg ctgaacgctc ccatcgagga aacagccgag
     1741 agctttcttc tagcctgcga tcttgccagc tgaaaagcat gtacatttaa tacaatatta
     1801 ataccaacca aaagtgagac tgacactgct aggattaaat ttaatggtat caataacacg
     1861 gataagtttt cagttagtct tatggtagcc attggaaaat atcccggaga tccgcagcat
     1921 aaagtcaatg caaaagacgg aaagtttatc gtatcatcaa gtgatacctc agtagggata
     1981 tagataagaa ttcttgaaag atatgcaaag aataggccat acaagataga tgaaattatc
     2041 aataacttga aataacttct tttcttgaat atacgagcta cggatgatag aagactaggg
     2101 ttatttggtg ttgtaacaat tgaaaacttg acaactagat ataggccata aacaaaaaaa
     2161 atgggacaaa tcacggtcaa aattatcacc agctgagcca gtccatataa tttttgaggc
     2221 ataatttgtg gaagttctga agatgtgaga gtagaatagg ccaaaaaaat gaagactatg
     2281 gaaaaaatac ttaatccaag aatcctaaat cccctgtttc tagagacctg atagtcacct
     2341 gcaggtatca aacaattgat gactagagtc ttcgcaaatt taacttaatt ggaccggtag
     2401 atattcatgg cgtcaggata caccctggtc ttctccatcc gacatgattt caatgacaat
     2461 gaaagcacaa aaaatctaaa tttcagcagt tgttgtcatt aacatggccg aaaatccacc
     2521 cggacatgat gaatacatta cagcccatat tagttatgta gggtttgtgg atcagattgg
     2581 cctg
//
LOCUS       DATLQL010000143         3382 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1277442, whole genome shotgun sequence.
ACCESSION   DATLQL010000143 DATLQL010000000
VERSION     DATLQL010000143.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3382)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3382)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3382
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1277442"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..992)
                     /locus_tag="VNB68_01490"
     CDS             complement(<1..992)
                     /locus_tag="VNB68_01490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit D"
                     /protein_id="HVD36056.1"
                     /translation="MPDFQQKVDETMKMGLEIVKESDEDRFMTLSVGPQHPGSGHFRF
                     TIKLDGDYIVFCDPDPGYVHRGEEKMSEYRNFIQNIPHLERPVIHDSTNITYSYSLAV
                     EELCSIEVPRRGQFIRAIASELNRQVYTLYWLAIYGIFLGHSTMFMWPTGDRELFIDL
                     LEALTGARVTHAFNIPGGVRNDMPEGFKDRCLRQVAYFEKRLKEYEDIFYNNPLFRQR
                     TEEVGILTKDDAISLGVAGSVLRASWVPLDIRKAEPYDVYNEIDFKVQYMKSGDSFAR
                     SMVPFLDMRESCHIIRQLLDKIPQAGEVRAKLQPNPKGPPGESYKRVESGRGALG"
     gene            complement(1020..1655)
                     /locus_tag="VNB68_01495"
     CDS             complement(1020..1655)
                     /locus_tag="VNB68_01495"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HVD36057.1"
                     /translation="MSSKDSSPDKPSASPDSANKILNSTPKDNPSANPEPTKIVTNTS
                     SSVIPSKTNAIAPKFEEELVNKIVARCGNKVEVVYARPSRLKIRVQPEDILQIASFIK
                     GVLGFDHAESVSGTDYPKDNQIEVVYHLGSYTVEDLIPKILALSTRTNRDEARLPSLI
                     NIFKSVEYHERETFEMLGVYFEGHPRMERFLLPEDWADIPPLRKDFRIKGR"
     gene            complement(1657..2238)
                     /gene="nuoB"
                     /locus_tag="VNB68_01500"
     CDS             complement(1657..2238)
                     /gene="nuoB"
                     /locus_tag="VNB68_01500"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoB"
                     /protein_id="HVD36058.1"
                     /translation="MMIYFKAASIKYLSHENTVEDALIKDLVNPTNFNLMVGKLGDVL
                     IKALDLPLGYAINWGRIWSLWPVHLETACCSVEFGAASGPRYDVERFGIIEAFGSLRQ
                     CDLIVVQGTVTRKMAPRLRMVYDQMPEPKYVIAMGACAITGGLYIDSYNVLPGIDGIV
                     PVDVYVPGCPPRPETLIQGCMLLQEKIKRSKIR"
     gene            2569..>3382
                     /locus_tag="VNB68_01505"
     CDS             2569..>3382
                     /locus_tag="VNB68_01505"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HVD36059.1"
                     /translation="MVQHIMVDNIYHEDCLKFMRRACRQKFFVDVIVTSPPYNIDKGY
                     SMYNDKISRRQYLKWMNKVAKLSMPIMRDNGSFFLNIGGTLLDPLIPFQVLQEFLKAG
                     YKLQNTIHWIKSISFDKVDVGKNSQVRDSFSVGHFKPIISSRFLTDLHEFIFHFSKTL
                     KTPLDKLSIGVPYQDKTNIGRWKSTKQDKRDRGNVWFIPYATIQKGRPHPAVFPEKLP
                     KFCLMLHGIRPDLVVYDPFIGAGTTASACINLDVKFVGTEIDEQYVRIARDSV"
BASE COUNT          972 a          719 c          620 g         1071 t
ORIGIN      
        1 cctaacgcgc ctctgccaga ctctaccctc ttataagatt cacccggggg accttttgga
       61 tttggttgta actttgctcg tacttcgcct gcttgtggta tcttatctag taactgtctt
      121 ataatatgac aagattccct catatccaaa aagggtacca tggaccgcgc aaatgagtca
      181 ccacttttca tatactgaac cttgaaatct atttcattat agacatcgta cggttcagct
      241 ttccttatgt caagtggaac ccaagatgct ctaagcaccg atcccgccac accgagactg
      301 atcgcatcat ccttagtaag aattcccact tcctcagtcc tttgtctaaa gagagggtta
      361 ttatagaata tatcctcata ctcttttagt ctcttttcaa aatatgcaac ttgtcttaag
      421 cacctgtcct taaatccttc cggcatgtcg tttctgacac cgcctgggat attgaaggca
      481 tgtgttactc ttgccccagt caaagcttct aaaagatcta taaacaattc tctgtcacca
      541 gtgggccaca taaacatagt tgaatggcca agaaatatcc cataaattgc tagccagtat
      601 aaggtatata cttgcctatt cagttcagaa gcaatggctc ttatgaactg gccccgccgc
      661 gggacttcaa tactacaaag ttcttccact gccaaactgt atgaataagt gatgttagtt
      721 gaatcatgaa tcaccggtct ttctaaatgt ggtatgtttt ggataaaatt tcgatattct
      781 gacatctttt cttcaccgcg atgcacatat cctgggtctg gatcgcagaa gacgatatag
      841 tctccatcca attttattgt aaatctgaaa tgcccagaac ccggatgctg tggccctacg
      901 ctaagagtca taaatctgtc ctcgtcagac tccttaacaa tttcaagacc cattttcata
      961 gtttcgtcaa ctttttgttg gaaatctggc atcttgtttc taacctctac acctaactcc
     1021 tatctaccct tgatcctgaa atcctttcta agtggtggta tatcagccca gtcttcgggt
     1081 agaagaaatc gttccatcct aggatgacct tcaaagtaaa cgcctaacat ttcaaaagtc
     1141 tctctttcat ggtactcgac gctcttgaat atattaatta gacttggcag tctagcttcg
     1201 tctctatttg tccttgtcga tagagccaaa attttaggaa ttagatcttc aacagtataa
     1261 gaacctaggt ggtaaacaac ttcaatttga ttgtctttag gataatctgt accagaaact
     1321 gactctgcat gatcaaaccc caagacccct ttgataaaag aagcaatctg taaaatatct
     1381 tcaggttgaa ctctaatctt cagtcgtgat ggtctggcgt acactacctc cactttgtta
     1441 ccacatctgg caacaatctt attgacgagc tcttcttcaa attttggagc tattgcatta
     1501 gttttggatg gtatcaccga ggacgatgta ttcgttacaa tttttgtagg ttcggggtta
     1561 gcagatggat tatcctttgg agtagagttc aaaattttgt ttgcagaatc tggggatgca
     1621 gaaggtttat cgggacttga atctttggaa ctcattctat cttatcttcg accttttgat
     1681 cttttcttgt agtaacatac agccttgaat taaagtttca ggtcttggag gacaaccagg
     1741 tacatacaca tcaaccggta caattccatc tataccggga agcacattat aagagtctat
     1801 ataaaggcca cccgttattg cacaggcccc catggctata acgtatttgg gttctggcat
     1861 ctgatcgtac accatcctaa ggcgaggagc catctttcga gtcacggtac cctgtacgac
     1921 aattagatca cattgcctaa gtgatccaaa tgcttcaatt attccaaatc tttctacatc
     1981 ataccttggt cctgatgcgg caccaaattc tacactacag cacgccgtct caaggtgcac
     2041 aggccagaga gaccatatgc gtccccagtt gatggcataa ccaagtggca aatcgagtgc
     2101 ttttataagg acatccccca gttttccaac cataaggtta aagttagttg gattgactag
     2161 gtctttaatc aaagcatctt ctacagtatt ctcgtgactt agatatttaa tgcttgccgc
     2221 tttgaagtag atcatcatat ttcttttctc ctagtttgag taaatgatcc cttaaagttc
     2281 gcaacaacct cctaatcttg attagctgtt gaaacattta accacctttg atatgtattc
     2341 cttctgacca agagcatttc aatacagtcg tggctcaatg gaatggcata cagctacatg
     2401 tattaaaata acagccatta tcttaactgt ttatccttct ccgagtcatt aatgttaaat
     2461 tacgggtgtc aattatgtat tttgaccatg gcttcgaatt cattgtgtca agctattgat
     2521 ccatttcttt ttccatactc ttcatttcac tacattaact gatgtggtat ggtacaacac
     2581 ataatggtcg acaacatcta tcatgaagat tgccttaagt tcatgagaag agcatgcaga
     2641 caaaagttct ttgtagatgt tattgttact tctccgccat acaacataga caaaggatat
     2701 agcatgtaca atgataaaat tagtaggcga caatatttga aatggatgaa taaggtcgct
     2761 aaactaagta tgcctataat gagagataat gggtctttct ttttgaatat aggtggtaca
     2821 ctattggatc cactgatacc atttcaagta ttgcaggaat tcttgaaggc gggatacaag
     2881 ttacagaaca caattcattg gataaaatca atttcattcg ataaagttga tgttggcaag
     2941 aattcgcaag tccgagatag tttttccgta ggtcatttta aaccaataat tagtagtcgt
     3001 tttcttacag accttcatga gttcattttt catttttcca agacacttaa aactccacta
     3061 gataagttat ctataggtgt accatatcaa gacaagacta acataggtcg gtggaagtct
     3121 acgaaacagg ataagagaga cagaggtaat gtgtggttca tcccttatgc gactattcaa
     3181 aagggaagac ctcatcccgc agtgtttcct gaaaagttgc caaaattctg cttaatgtta
     3241 catggcataa gacctgattt ggtagtttac gatcccttta ttggtgcagg tactactgca
     3301 tcagcgtgta tcaatctcga tgtaaaattt gttgggactg agatagatga acaatatgta
     3361 agaattgcta gagatagtgt aa
//
LOCUS       DATLQL010000144         1216 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1277475, whole genome shotgun sequence.
ACCESSION   DATLQL010000144 DATLQL010000000
VERSION     DATLQL010000144.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1216)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1216)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1216
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1277475"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..837
                     /locus_tag="VNB68_01510"
     CDS             <1..837
                     /locus_tag="VNB68_01510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36060.1"
                     /translation="NKNNNNEIIWLTSSRTSDILRFNTQTKNFTALFSLPTKDASPLG
                     ITIDSTGQIWIAEGAGKLANLDPAKNYTVTEYSPKGKNNTLLSPTALLADPETQNIYI
                     SEHDGHRVSVFNPILKSFKRYPPLDPNGLPFGMALDSFGNLWVAEHTINKIGVIDPQT
                     GTNKEIEIPSPNPFVQWISSDSKGQIWFAEQRGNSLGVITANVNLQSNVVARVQKLDN
                     SNSNSTNQPNSNNAIPKLGFSYTDIIGPSIASGIIISALFYAKSIVDLKKSVVQASNR
                     KR"
BASE COUNT          413 a          249 c          223 g          331 t
ORIGIN      
        1 aacaaaaata ataataatga gatcatctgg cttacgtctt cccgcactag tgacatacta
       61 agatttaata cgcaaacaaa gaattttact gcactcttca gtcttcccac aaaagacgct
      121 agtccactag gaataacaat agattctact gggcagatct ggattgcaga aggagcagga
      181 aagctagcca atttagatcc agccaagaac tatacagtta cagaatactc acctaaagga
      241 aaaaataata cacttctcag tccaactgca ttgttagccg atcccgaaac acagaacatt
      301 tacatatctg agcacgatgg tcatagagta tcggttttta acccaatatt gaagtctttc
      361 aaaaggtatc caccccttga ccctaacgga ttaccatttg gaatggcact cgatagtttt
      421 ggtaatttat gggtggctga acacacaatc aataaaattg gagtaattga tccacaaact
      481 ggaacaaaca aagagataga aatcccttca cctaatccat ttgttcagtg gatatcctct
      541 gactccaaag gacaaatatg gtttgcagaa caacgaggaa attctcttgg cgttataaca
      601 gcaaatgtaa atctgcaatc aaacgttgta gcgagagtac aaaaattgga taacagtaat
      661 agcaattcca ctaatcagcc taatagtaac aatgctattc ctaaattagg cttcagttat
      721 actgatatca ttggaccatc tatagcttca gggataatta ttagtgcgct tttctatgca
      781 aagagcatag tggatctaaa gaagagtgtg gttcaggcta gcaacagaaa gcgttgatcg
      841 tcaccgataa atccattccc cggagctcgc tattttgagg taagatactc ctatgcaagc
      901 aactgagaca gtgttgctga tactaattca ttcaaaataa ttgttaacag aattgacaga
      961 gattaaacta cattagagaa gatggaagaa gtcgtttcat agccataggt ttggatgaga
     1021 agaggtctca attgactagt gtttgttaac tcagtaaatc aactccataa agatctatct
     1081 aattagtcat cgttgtgccc agttacttcg caattatcaa gtgcgatatc accttctgtt
     1141 gcgttgaagt ctacaacaac atcattccca tccccgcagt caaacagatc tgcccctgga
     1201 ccgccttgta gtgtat
//
LOCUS       DATLQL010000145         2324 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_35831, whole genome shotgun sequence.
ACCESSION   DATLQL010000145 DATLQL010000000
VERSION     DATLQL010000145.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2324)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2324)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2324
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35831"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..668)
                     /locus_tag="VNB68_01515"
     CDS             complement(<1..668)
                     /locus_tag="VNB68_01515"
                     /inference="COORDINATES: protein motif:HMM:NF014433.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsA-related P-loop ATPase"
                     /protein_id="HVD36061.1"
                     /translation="MPASCEALRFLHFPKLAGSMGRKLVGIGGLVRGLARLFQPLSGY
                     SGQLGSFLNQEADIMKRLENLGSIMSNQSITSLRLVTNTDVFSLKNAKRALMSASLFG
                     INVDLVLINKVDKTRYETKKISENIPFEFYPVPCRIAELRKTELQGIQMLRDHALEIF
                     NDSDPSNVFFQGKVYSLTETNDSVTVTVRLPFVKESDVNVIKDGDELIITARHEAGHV
                     ANTV"
     gene            complement(803..1036)
                     /locus_tag="VNB68_01520"
     CDS             complement(803..1036)
                     /locus_tag="VNB68_01520"
                     /inference="COORDINATES: protein motif:HMM:NF014433.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsA-related P-loop ATPase"
                     /protein_id="HVD36062.1"
                     /translation="MRLIIYTGKGGTGKTVSSCATAINLADKNYKTILISSDPAHTLS
                     DALLINIGNEFSDVLPNLMNIEIDPIFEMQKLR"
     gene            complement(1176..2285)
                     /locus_tag="VNB68_01525"
     CDS             complement(1176..2285)
                     /locus_tag="VNB68_01525"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HVD36063.1"
                     /translation="MIPINKPQRDEREKEEILLVLEEGNLTSPAMDGGKRVREFEELL
                     KGYLKVKNVVAVNSGTSALHAGLLAAGIGHGDEVLLPSFTFVATANAVMATGARPVFV
                     DILPTDYTADPIDIERKITAKTKAIIPVHLYGHPASMNQILEIREKHSLLVIEDACQS
                     LGSSYFGRQTGSIGNMGCFSLYASKVLTAGEGGAIATDDDDLASNLRMIRNHGMVKGY
                     DTRVLGLNMRLPEISAAIAKVQMQKLPRILELRRRNAKLLHRLLGAVNQRLSLGLPIE
                     PNGSRYNWYLYTVTINNKRDEIKKQLNNAGIGATIYYDPPVHMTPYYSTMSDGIKLEN
                     TEMASKDVLSLPVHQSLTEEEIRFIANKVVEAMDN"
BASE COUNT          651 a          507 c          412 g          754 t
ORIGIN      
        1 atgactgtat ttgccacgtg tcctgcctca tgccttgcag taattattag ttcatcaccg
       61 tctttaatta catttacatc agattcttta acaaatggca gtctcaccgt gactgtaact
      121 gaatcattgg tctcagttaa agagtatacc tttccctgaa aaaaaacgtt agaagggtca
      181 gaatcattaa aaatttcaag ggcatgatct cttaacattt gaattccttg tagttctgtt
      241 ttccttaatt cagctattct gcacggcact ggatagaatt caaacggtat attttctgaa
      301 atcttttttg tttcataacg cgtcttatcg accttgttta taaggacaag atcgacgttt
      361 ataccaaata atgatgcgga cattaaagcc cttttagcat ttttgaggct aaacacatct
      421 gtatttgtta caagacgtaa actagtaatt gactggtttg acattatgct accaagattt
      481 tctagacgtt tcatgatgtc tgcttcttga ttcaagaatg agcccagctg accagaatat
      541 ccggacaatg gctgaaacaa tctagcaagc cccctaacaa gcccaccgat gcctacaagc
      601 tttcgcccca tagaaccagc caactttgga aaatgtagaa accgaagagc ttcacatgaa
      661 gcaggcatat ctaccacgct tcgtgttaag acatgttcaa ttttaatagc gacaagagtt
      721 gtgtcattcc aggcaacata cccatttcgt aagccatagt tcgactaaca cccgtagaag
      781 tagaagcaat ataggaaaaa agctatcgta acttttgcat ctcaaatata gggtctatct
      841 ctatgttcat aagattaggc agtacgtctg agaattcatt tcctatgtta attaataggg
      901 catcacttag tgtgtgagca ggatctgaag atatcaatat tgttttgtaa tttttgtctg
      961 ctagattgat ggcagttgca catgacgaaa cagttttccc tgtgcctcct tttcctgtgt
     1021 aaataatgag tctcaagtca gtgcattatt tttaatggta tcaattaaat ccttcagagt
     1081 taacatatca atcgaagaca tcaataacat ttctactatt tagtatcacc aatatcacga
     1141 gagtatgtcg taccggctcc atgtcctatc catgttcagt tatccattgc ctccacaacc
     1201 ttattggcaa taaaccttat ttcctcttct gttagtgatt gatggacagg taaagaaaga
     1261 acatctttag atgccatttc agtattttcc aatttaatcc catcactcat agtagaataa
     1321 tatggtgtca tatgtacagg ggggtcgtaa taaatggttg cgcctattcc tgcattattc
     1381 aactgtttct taatttcatc ccttttatta tttatagtta ctgtataaag ataccagtta
     1441 tatcttgatc cgttaggttc gataggcaat cctagactta gtcgttgatt cactgcacca
     1501 agtagccggt gcaatagctt ggcgtttctc cttcttaatt ctaaaattcg tggtaatttt
     1561 tgcatttgta cttttgctat tgcggcgctt atttcgggca atcgcatatt tagccccaag
     1621 acacgtgtat catacccctt caccattcca tgattcctaa tcatcctaag gttgctggcc
     1681 agatcatcat catcggttgc gatagctcca ccttccccag cagtaagcac tttacttgca
     1741 tacaggctaa aacaacccat attcccaata gaaccagtct gtcttccgaa ataagatgat
     1801 cctaatgatt ggcatgcatc ttcaatcacc agcaaagagt gtttttctct aatttctaga
     1861 atttggttca tcgatgcggg gtgaccatac aaatgtactg gaattattgc tttagttttg
     1921 gctgtaattt tcctttcgat atcaattggg tctgcagtat agtctgttgg caaaatatca
     1981 acaaacactg gtcttgcacc cgttgccata acagcattag cagtcgcgac aaaggtgaat
     2041 gatggaagta agacctcatc accatgccca atccctgctg cgagtaggcc cgcatgcagt
     2101 gcagaggtac ctgaatttac tgcgacaaca tttttgacct tcaaatagcc tttcaatagt
     2161 tcttcaaatt ctcgtacacg ttttcctcca tccatcgccg gagaagtcaa gtttccctct
     2221 tccaatacga gaagtatctc ttccttttca cgctcgtccc gttgtggttt gttgattggg
     2281 atcagctaaa attcctcctg ctggtaggac agctctcttt gaaa
//
LOCUS       DATLQL010000146         1594 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2345285, whole genome shotgun sequence.
ACCESSION   DATLQL010000146 DATLQL010000000
VERSION     DATLQL010000146.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1594)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1594)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1594
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2345285"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            218..859
                     /locus_tag="VNB68_01530"
     CDS             218..859
                     /locus_tag="VNB68_01530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36064.1"
                     /translation="MKIHLNKRKEVLDIAVEEKKEQSDHNQHHENIITSYSLMTLFVP
                     IVALVLVLAYGNLLALNYLHVLTGGTWTGIDLFMGVVMSRILKGLEPQARTQVIKKLV
                     PLMLFLMPALATVAITSGINLASRMGMLTLASPMIVAAVVIVVILSVQGFGILMPTEI
                     RIFLELRKKAPNKDKIIKWGMRNVKLAGSQGVFQVALIFVMANLALGFTLIPQ"
     gene            1140..1523
                     /locus_tag="VNB68_01535"
     CDS             1140..1523
                     /locus_tag="VNB68_01535"
                     /inference="COORDINATES: protein motif:HMM:NF014664.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HVD36065.1"
                     /translation="MSYPETVSDMEKEFGIMPGFFKGVPQDVLVQMWPVMKRYMLGES
                     KIPPKYREMIGLAVAATLKCPYCEIFHKGAAQMHGATDEELAEVAALAGQTTFWSNIL
                     HAQHYDINTFMKEFQAMGEQLSKKR"
BASE COUNT          529 a          310 c          324 g          431 t
ORIGIN      
        1 accatgtaat ctatgcatca gaacctgata gggctgtggc atttgaaacc atgctactcg
       61 aagatggaga atcgtaatta aatacaatct caatttccgc tcaaatagat aacacacaca
      121 cgccccatca ggatttggac aaaaattcat ttgaaccaaa aggcaggatt ttctgttttg
      181 ttaccgaaag tatccataga ccaagagaga gatgcaaatg aaaattcatt taaataaaag
      241 aaaagaagtt ctagatattg cagtggaaga aaaaaaagaa cagtcagacc ataatcagca
      301 ccatgaaaat atcataactt cttattcact tatgactttg tttgttccaa ttgtagctct
      361 tgtattggtt ttagcctatg gaaacttgct ggccttaaac tatctgcatg tattaaccgg
      421 aggaacttgg acaggcatcg acctttttat gggcgtcgtt atgagcagga tactcaaggg
      481 cctagagcca caagcaagga cacaggtaat caaaaaactt gtccccctca tgctattcct
      541 tatgcctgct cttgcgaccg tagcaataac atctgggata aatcttgctt cgaggatggg
      601 tatgctaaca cttgcttccc ctatgatagt cgcagctgtt gtcatagttg ttattctgtc
      661 ggtgcaggga tttggcatac ttatgcctac agaaatccgc atatttctag agctgagaaa
      721 aaaagcgcct aataaagaca aaataataaa gtggggaatg agaaacgtaa agctggcagg
      781 gagtcaagga gtatttcaag tagcactcat ctttgtaatg gcaaatttgg cacttggatt
      841 cactctaatt ccacaataaa aaagaccaaa gaattctgag gaatttgtaa agcggatagc
      901 agagagctag aagtaaactc ggagtaagag cgcgccgcgg ccaagattcc aaatgcaggt
      961 ttaaggttct tcatgaataa gtacacttgt agtgccatgg aatattattg attctaaaaa
     1021 gactgtgtcg aactactata ccatcatatg cgtccgtatg caaaccagac cagtaataat
     1081 attatcctct atatgttttt tcctagatat ttaatatagc gtcaacactt acctccgaca
     1141 tgagttaccc agaaactgta agtgacatgg aaaaagaatt cggcattatg cccgggtttt
     1201 tcaaaggagt acctcaagat gtgttggtgc aaatgtggcc tgtaatgaaa agatacatgc
     1261 ttggagaatc aaaaattccc ccaaaataca gagagatgat aggccttgca gtcgcagcca
     1321 ctctaaaatg tccctattgt gaaatatttc ataaaggagc agctcagatg catggcgcaa
     1381 cagatgaaga attggcagaa gtggcagcac tagctggaca gaccaccttt tggagtaata
     1441 tacttcatgc acagcactat gacattaata cgttcatgaa agaattccaa gcaatggggg
     1501 aacagctttc aaagaaacgt tagaccatta ggcccattat gacttggtct tcctttcgaa
     1561 gacaataact ctacttctct aatttttgtt acat
//
LOCUS       DATLQL010000147         1284 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_570416, whole genome shotgun sequence.
ACCESSION   DATLQL010000147 DATLQL010000000
VERSION     DATLQL010000147.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1284)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1284)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1284
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_570416"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..309
                     /locus_tag="VNB68_01540"
     CDS             <1..309
                     /locus_tag="VNB68_01540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36066.1"
                     /translation="LAKVAAYKTIYDEPPLPLILFKDRYQNDDKIVIGAAMNLNESDT
                     ISYFYYIFINEQPRSPFLRYSSQRVEQPSFSNRIDEHGYIYLKVITLSGDHPLVRIYV
                     "
     gene            302..1054
                     /locus_tag="VNB68_01545"
     CDS             302..1054
                     /locus_tag="VNB68_01545"
                     /inference="COORDINATES: protein motif:HMM:NF012441.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine 5'-phosphate decarboxylase"
                     /protein_id="HVD36067.1"
                     /translation="MSRQSGFTERIDNSSRNKDSRIILALDLLPNPDLKEVVKSLIVL
                     LHRHICGIKINFHLILPLSLLDLSEINRLAHNYGLQSIADIKLTDIASTNGVALSYLF
                     KMEFDAVIVNPLMGQSALDSAVKQAHLMGRGILALIYMSHCDAGKTFGIKVIQKSKAG
                     DSFAVSLYENLLRSAYRCHVDGIIVGATQSKILNQIFKKKKTPVYSPGLGVQGGDFKK
                     AAKNGTDYFIVGRSIILEKDPLNAIKKLRTQI"
BASE COUNT          404 a          252 c          246 g          382 t
ORIGIN      
        1 cttgccaagg tggcagcata caaaactatc tacgatgagc cgccccttcc tttgatactg
       61 tttaaagata gataccaaaa tgatgataaa atcgtgatag gagcagcaat gaacctaaac
      121 gaatcagata caatatcata cttctactat atttttatca atgagcaacc taggagtcct
      181 tttcttcgct attcaagcca gagggtcgaa caaccgtcgt tctcaaatag aatagatgag
      241 catggttata tctatcttaa agtaattacg ctgtctggtg atcacccact agtgagaata
      301 tatgtctagg cagtctggct tcacagaacg aatcgacaat agttcaagaa acaaagacag
      361 ccgtataata ttagcactag atttgctgcc taaccctgat ctgaaagaag tagttaaatc
      421 actaattgtt cttcttcatc gacatatatg tggcatcaaa attaactttc acctcatttt
      481 gccgctatct ctattggatt tatctgaaat aaacaggtta gctcataact atggattgca
      541 atctattgcg gatataaaac tcactgacat cgcaagcact aacggggttg ctctcagcta
      601 tcttttcaag atggaatttg acgcagtgat agtcaatccg cttatgggac aaagcgcgtt
      661 ggactcagcg gtgaagcaag ctcatcttat gggtcgcggt attcttgcat taatctatat
      721 gagtcactgc gacgcaggga aaacttttgg cataaaggtt attcagaaat caaaagcagg
      781 tgattccttt gccgtatcgc tgtatgaaaa tctcctccga tctgcgtacc gatgccatgt
      841 agatggaatc atagtaggag cgactcaaag taagatattg aaccaaatat ttaagaagaa
      901 aaagacccca gtatattcgc caggcttagg cgtacagggt ggagatttta aaaaggctgc
      961 taaaaacggt acagactact ttatagtagg tcgttcgatt atcctagaaa aagaccctct
     1021 gaatgcaata aaaaaactaa ggacgcaaat atgataactt tttctaacat acttctaggt
     1081 atttttctct tctcttgagt ccatcatttt aacctggtgc gtttctgtaa ccggcccttt
     1141 ttgagaatct tgtcccatgt ttaatatggc atgctcatcg atgggccaag tttgaaagtc
     1201 gactcgatac aatttgaact aaggtttcag aaaatattag gttgatgtcc attccttaat
     1261 ggattacaaa ctttaatttt atat
//
LOCUS       DATLQL010000148         1536 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2167117, whole genome shotgun sequence.
ACCESSION   DATLQL010000148 DATLQL010000000
VERSION     DATLQL010000148.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1536)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1536)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1536
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2167117"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            79..501
                     /locus_tag="VNB68_01550"
     CDS             79..501
                     /locus_tag="VNB68_01550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36068.1"
                     /translation="MEKLSSVFSRPMLIYDDKCYACKKFASYASTLSRGWIRLAGHYY
                     SQEAINAKKMIFPAYYDSTKMFWLINEKGAYGARSGLLPVAREIIKGIFKRRGLKDQV
                     NLVMACDYDEKLSCASGMNTLKRIVNMMLNSSQLHFQN"
     gene            599..>1536
                     /locus_tag="VNB68_01555"
     CDS             599..>1536
                     /locus_tag="VNB68_01555"
                     /inference="COORDINATES: protein motif:HMM:NF015651.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysylphosphatidylglycerol synthase
                     domain-containing protein"
                     /protein_id="HVD36069.1"
                     /translation="MNWRLLAIPASIVPLLIMVFVTHVSPNDIFAVGLLPFVLSSASA
                     VMGKLVLQAFRFKYFIYKFIGHNVSSTGKVITARLAGEFVTQTTPSYVGGELVRIAWL
                     TKNGVAVGKAAWITTMEIIADVFVGTMLAFIAGALAIYHGGYFIGIIVILVAIPTFVF
                     WLLLIVFSARRNLRLPHFSKRLLQRFISQEKADRLIGSTNAAIADLCSMSRQNFNSTK
                     AVKTFAVGIGITFVAFLFQGISFMVLANTEGGSNLGLFDSLMATSASTALSTIPITIG
                     GSGLAELGIWAYIANLHGIPSFNDVIVNSHLSVIIA"
BASE COUNT          436 a          275 c          320 g          505 t
ORIGIN      
        1 gtgtgcgtgc atttaactga tgatctgtca ttcaaagttc aagatttata atagatagcg
       61 atcatatgaa gcatcatcat ggagaagcta tcatctgtat tctcaagacc tatgcttatc
      121 tatgacgaca aatgctatgc atgcaaaaag tttgctagct acgctagtac cctctctaga
      181 ggatggatac gtctggcagg acattattat tcacaagaag caataaatgc aaaaaaaatg
      241 atatttcctg cgtattatga ctcaacaaaa atgttctggc ttattaacga aaaaggcgcc
      301 tacggggcca ggtctggatt actaccggtc gcaagagaga tcataaaagg catctttaaa
      361 agaagaggat taaaggatca ggtgaatcta gtaatggcat gtgattatga cgagaaattg
      421 tcatgcgcgt caggcatgaa tacactaaaa cgtatcgtaa atatgatgct gaatagcagt
      481 cagcttcatt tccaaaatta atctaattcc atttagatca gttctgctac atgtctgtca
      541 tttatcttct tcttctatta attattatat gactgtgttt tatcttcaat gaatactgtt
      601 gaactggcga ctgcttgcaa tacctgctag tattgtacca ctgctaatta tggtcttcgt
      661 tactcatgtt tctcctaatg atatatttgc agtgggtctg ctgccgtttg ttctgtcttc
      721 agcatcagca gtaatgggta aacttgtctt gcaggcattt agattcaaat attttattta
      781 caagttcatt ggccacaatg taagttcaac tggtaaggta ataaccgcaa gacttgctgg
      841 cgagttcgta acacagacaa cgccctcata tgtgggaggc gaattagtta gaatcgcgtg
      901 gttaactaag aatggagtag ctgtcggtaa ggcggcatgg atcactacga tggaaattat
      961 tgcagatgtc tttgtaggaa ctatgctcgc atttattgct ggggctcttg cgatctacca
     1021 cggcggttat ttcattggta ttatagtaat acttgttgct attcctacat tcgttttttg
     1081 gttattactc attgtatttt ctgcaaggcg taatcttcgt cttccacatt tctccaagag
     1141 gcttttacag aggtttattt cgcaagagaa agcagaccga ttgattgggt caaccaatgc
     1201 tgctattgcg gacctatgta gtatgagtag gcaaaatttc aattctacca aggcagtaaa
     1261 aacatttgca gtggggattg gaataacttt tgttgcattt ttgtttcaag gtatatcatt
     1321 tatggttctt gccaatacag agggaggatc caatctagga ttatttgatt cattaatggc
     1381 aacttctgca tctacagctt tgtccactat tcctataact ataggtggtt ctggacttgc
     1441 tgagcttgga atctgggcat acatagctaa cctgcatgga attccatctt ttaacgatgt
     1501 gattgtgaat tcacatttaa gcgtgattat agcatg
//
LOCUS       DATLQL010000149         1826 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_36995, whole genome shotgun sequence.
ACCESSION   DATLQL010000149 DATLQL010000000
VERSION     DATLQL010000149.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1826)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1826)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1826
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36995"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            907..>1826
                     /locus_tag="VNB68_01560"
     CDS             907..>1826
                     /locus_tag="VNB68_01560"
                     /inference="COORDINATES: protein motif:HMM:NF012401.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HVD36070.1"
                     /translation="MSFFVGGLAAGAIAVTVSLLLRLFVGGIFIPEIESQTLFSLTPG
                     QVESQAVERFGPLAKYSAFIGAVAANLILYGLIGLLVGLLQKKKRLPSKGYVLNAIQS
                     SLVAYIILLVISALLLAVTETNVQVKLDSIRFLAIYLVPANIAFGFTLSSFYERIVLL
                     RRSSITVTKKEDTSKIEIDYKKRLLLRAGIASAVALPILYFGLNSLLVPKKEIQQLSP
                     SLSALLRSKSKAPGFEDPKLGSLLESEITPTDLFYRIDKNPIVPEVNAQTWNLTMKGL
                     VDKPFEINYKELRDMPSIEQFATLECVSNK"
BASE COUNT          561 a          358 c          322 g          585 t
ORIGIN      
        1 atggagaatc agattccatc ataaaagatt cacgctcttc ttgtgaaata ggatttggta
       61 tgtcagactg gtttactctt cctagatctt gaacccacat tgcagttcta caaagtgaca
      121 cacgtaccca gtaactgcca ccttcaagct ctgcagccat tccactaact gtttcagcta
      181 attgctctgc gccccttcta tattgtcaag gaccagcttc tccataagcg ctttctgaaa
      241 catagactat accaggtctg agtttggcta acttcaatgg agataagcca tgttttgata
      301 agccacttct atggtaattt tcagagaata tcagcttggt ttatgagtac tttaagttgc
      361 tttacatcgt tcggtttatc tagaactatg aatgcagatt tctttcctaa ccctgtctca
      421 agtaacgctg aaagaagata gataaaattt tttgtatact agccttaatt tctttagcaa
      481 gtagagagaa aagagttact gccaactgct gctagatgaa aagaatcatt gaatacgttc
      541 tcgtatgcta atattagcac cggttcattt tctcatcgtt atattatgag aaattcgaga
      601 gcagtgtata tccatggtca ttcagatcca gattatattt tccaactaaa atgtagagca
      661 taattatggg tacacaataa atcaagtcat cgggttgttc attaatgaga gttttacgaa
      721 attacgaaca tttcttgaat tgtaccaaac tgaatcgaat aaatcatttc ttttgcgaac
      781 tgttacaact gtgtgccaca acctttgcat agacccaaaa tctaatcaaa tttgagaaaa
      841 aacttaaatc attcctgtcc aagacagaca tgtgatccaa aaattaactt aagacaacct
      901 tctactatgt cattctttgt tggagggctc gctgctggcg ccatagctgt aacagtatct
      961 ttacttctaa gattatttgt aggtggtata tttattcctg agattgagtc tcaaacttta
     1021 ttctcactta ctcctggaca agttgaatca caagccgtgg agaggtttgg tcctcttgct
     1081 aaatactctg cgtttatagg cgctgttgct gctaatctta tattgtatgg tctaattggt
     1141 ttacttgttg gactattgca aaagaagaag agactccctt cgaagggata tgtactaaat
     1201 gcaatacaat cttcactggt agcctatatt attctgcttg tgataagtgc tttgctctta
     1261 gccgtgactg aaacgaatgt tcaggtaaaa cttgactcga ttaggtttct ggcgatctat
     1321 cttgttccag ctaatattgc tttcggattc accttgtcct ctttctatga aaggatagta
     1381 ttattgcgcc gatcctcaat tacagttacc aaaaaagaag atactagcaa aatagaaatt
     1441 gattacaaga aaaggctgct actacgtgct ggcattgcat cagcagttgc tttacccatt
     1501 ctttactttg gattaaattc tcttttagtt ccaaaaaaag aaatacaaca gctatctcct
     1561 tctttatcag cgctacttag atcaaaatcc aaagccccgg gctttgagga tccaaaactc
     1621 ggatcacttc tcgagtcaga aataacgcca acggatctat tctacagaat tgacaaaaac
     1681 cctatagtac cagaagttaa tgcacaaact tggaatctaa ctatgaaggg attagtggat
     1741 aaaccttttg aaatcaatta taaagagctt agagatatgc cttcaataga gcagtttgct
     1801 acactagaat gtgtaagcaa taaaat
//
LOCUS       DATLQL010000150         1342 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_37159, whole genome shotgun sequence.
ACCESSION   DATLQL010000150 DATLQL010000000
VERSION     DATLQL010000150.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1342)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1342)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1342
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37159"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(175..1221)
                     /locus_tag="VNB68_01565"
     CDS             complement(175..1221)
                     /locus_tag="VNB68_01565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36071.1"
                     /translation="MVAALLLNGIVFTNAFSHLPHTPHYNGGSNRDGVGKYYPYLALD
                     PEYTKPDYPTQIMFSIQNFGGNDVYNIATMVEIYDEISGNRIKVFPWTLHEIGDFEYY
                     YTFPRVGNYQIVLSVASDNAKIDSGQFDPPRSILGSNSDCACDRAIFNITVSNTWGNI
                     RNSLFAIAVIFPIVTLGIILGTSYRKRQKYNQSKKSQNREVIKYGIMLLAIAGGLVHL
                     AIFPEHGSQQIYYSVFLLTAACVQVAYGILYILVNLAGDTESRYDRHSLIAKYRKTLL
                     VNLFGLIGTGVLVGLYFYVVLFPPPLSPTNTPEIVDIAGILAKTVELLLIGGIVSLMI
                     WEKRKLRNLIIRLN"
BASE COUNT          410 a          262 c          260 g          410 t
ORIGIN      
        1 atcgcagatg tagagccaaa tacaaatatt attagaatac atttatctaa ttcactttcc
       61 gttaccacct gagatatctt atcagtaata tctatcctat cattatcccc attagaagat
      121 attgaaatta tttttgaaaa tatccttaga ctagctttga aaagtcgtat atcattaatt
      181 caatcgtatt attagattgc gtaattttct cttttcccaa atcataaggg acacaattcc
      241 tcctatcaaa agtaattcga ctgttttagc tagaattcca gcaatgtcta cgatttctgg
      301 cgtattggta ggagaaaggg gtggagggaa tagtaccacg tagaagtaaa gccctaccaa
      361 aactcctgtc ccaatcagac cgaaaagatt tacaagtaag gtttttctat atttagcaat
      421 aagagaatgc ctgtcataac gagattcggt gtctcctgca aggttaacaa gtatgtatag
      481 tattccatat gcaacctgta cacaggcagc agtaagtagg aacacagaat agtagatttg
      541 ttgtgaacca tgctcaggaa agattgcgag atgcaccagg ccgccggcaa tagccagcaa
      601 cattatccca tactttatga cctcacggtt ctgagatttc tttgattgat tatatttttg
      661 tcttttgcgg tacgaagtac ccaaaattat gcccagagta actattggga atattacggc
      721 gattgcgaaa agcgaatttc gtatgttccc ccaagtgttt gaaactgtta tgttaaagat
      781 tgctctatca cacgcacagt cgctgttgct acctagaata gatctaggag gatcaaattg
      841 gccagagtct atcttggcgt tgtcagatgc cacagacaag acaatctggt agtttcctac
      901 tctaggaaat gtgtaataat actcaaaatc tcctatctcg tgtagcgtcc atggaaacac
      961 cttgattcta tttcccgaaa tttcatcata aatttccacc atcgttgcga tgttgtaaac
     1021 gtcatttcca ccgaaattct ggatgctaaa cattatctgc gtgggatagt ctggtttggt
     1081 atactcagga tctaaagcga gatagggata atattttcca acaccgtctc tgttagaacc
     1141 gccattataa tgtggggtat gcggtaggtg agagaaggcg tttgtaaaaa ctattccgtt
     1201 gaggagtaat gcggcgacca acaataatag tgacgtccac aatcttatct gtgcctttct
     1261 tttcaagcct tgtagagact atttgacagt ataagatcat ataagtcgtt atgccgcgat
     1321 aatgttgaca tccccataaa ag
//
LOCUS       DATLQL010000151         1263 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_37292, whole genome shotgun sequence.
ACCESSION   DATLQL010000151 DATLQL010000000
VERSION     DATLQL010000151.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1263)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1263)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1263
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37292"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1241)
                     /locus_tag="VNB68_01570"
     CDS             complement(<1..1241)
                     /locus_tag="VNB68_01570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HVD36072.1"
                     /translation="MTITITDAKVKLLLGLLGYSSLYPPQELALSKGLLEGKSLLVTT
                     PTASGKTLIAMMAAIKTIEKGLKVIYLTPLRALATEKYHDFHVLEELDITGIKTRVKI
                     ATSDYNSSGKDVEDADVIILTNEKMDSILRHDPNWIYNVGLFIIDEIHLLTERERGPT
                     LEIILTKIKLMPQKPQIIGISATVSNSDEVAEWLTCESIQSNWRPTELIEGVYNYGKV
                     TMNDGTNYDIDNIGISDNSTSAITSLAMDSITNDGGQSLVFAETRKRTVSLAKKTSEI
                     VAKFLDKTSIKSAQKTGVEILKEGDDTELTRTLSSTVAKGVGFHHAGLGAKSRQIVEK
                     AFRNGIIKILFATPTLAAGVNLPARRVIITSIFRYDYQYGGNVPMSVLQYKQICGRAG
                     RPAYDKYGEAIIIADSRTNPE"
BASE COUNT          339 a          261 c          224 g          439 t
ORIGIN      
        1 tcttctggat tggttcttga atctgcgata atgattgctt ctccatattt gtcataagca
       61 ggccttcctg cacgtccgca tatttgcttg tattgtagaa cactcattgg aacattaccc
      121 ccatattgat aatcatatct aaaaatactc gtaattatta ctcgtctggc aggtaggttg
      181 actcctgcag caagtgtcgg tgtagcaaaa agaattttta tgatgccatt tctgaacgct
      241 ttttcaacaa tctgcctgct ctttgctcct aaacctgcat gatgaaagcc aacgcctttt
      301 gcaactgtac ttgaaagtgt tctagtaagc tctgtatcat ctccttcctt taaaatttcc
      361 actcctgtct tttgagctga ctttattgaa gttttgtcga gaaactttgc aactatttcc
      421 gatgtctttt ttgcaagcga cacggtgcgt ttacgtgtct ctgcaaaaac aagtgattgg
      481 cctccatcat tagttatcga atccattgcc agacttgtta tggcactagt tgaattatca
      541 gaaattccaa tattatcaat atcataattc gtaccatcgt tcatggtaac tttaccataa
      601 ttatacactc cttctatcaa ttcagtggga cgccaattac tttgaattga ctcgcatgtc
      661 aaccactcgg ccacttcatc tgaatttgat actgttgcac ttattccgat tatctggggt
      721 ttttgtggca tcaatttgat ctttgtcagt atgatttcca gtgttggacc tcgttctcgt
      781 tcagtaagaa gatgaatttc atcaataatg aatagaccaa cattataaat ccaatttggg
      841 tcgtgtctca agattgaatc cattttttca tttgttaaaa taataacatc tgcatcctct
      901 acatcctttc cagacgaatt atagtcgctg gtagcaattt tgactcttgt ctttatacca
      961 gtaatatcta attcctcaag gacatgaaaa tcgtggtatt tttcagtagc taatgcccgt
     1021 aggggagtaa gataaataac ctttagccct ttttcgattg tttttattgc agccatcatg
     1081 gctattagag ttttaccact cgcagtagga gtggtaacaa gcaagctttt gccctctaga
     1141 agaccctttg acagagcaag ttcctgtggt ggataaagtg aagagtatcc tagtaaacca
     1201 agcaagagct ttactttggc gtctgttatt gtgattgtca tgccttgagc atacagataa
     1261 aaa
//
LOCUS       DATLQL010000152         2119 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2346848, whole genome shotgun sequence.
ACCESSION   DATLQL010000152 DATLQL010000000
VERSION     DATLQL010000152.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2119)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2119)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2119
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2346848"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            341..1228
                     /gene="htpX"
                     /locus_tag="VNB68_01575"
     CDS             341..1228
                     /gene="htpX"
                     /locus_tag="VNB68_01575"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="zinc metalloprotease HtpX"
                     /protein_id="HVD36073.1"
                     /translation="MSTRLKRDFGLSARMILSFIILGILYVLFLSVLHYLGIGYIPLA
                     IIASAMILAQWYFSDKIVLWTSGAKIVSKDDYPKLHEIIERLASKNGIPKPKVAVVNT
                     QVPNAFATGKSPKSSLVAVTSGILNLLDDDELEAVIGHELTHVRSRDILVLTLASVFS
                     TVAWYLAQFGFFGGIQGRNRDSAGTTVIVIVVAIVTWIVSFLIIRAISRYREYAADRG
                     GAAMTGNPDKLADALLKISGKMNNIPTKEIERVQKLNAFFIIPALSGNSIANLFSTHP
                     PVEKRVAKLREMKTGMGQL"
     gene            complement(1376..1891)
                     /locus_tag="VNB68_01580"
     CDS             complement(1376..1891)
                     /locus_tag="VNB68_01580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36074.1"
                     /translation="MNVTSGIIISTILILTLAASVGTILPLISQQSSELVVDDETYTA
                     QKTAISNAGKLPIHQTHQVVTVLPPRTDGKVWVGTVTWASSKPIEVEMWHFYNSSITG
                     VDAAHGKPVLTPYGNNKTIAFTLLKPSSGTSLPSGSTNFAASELSFHTLDGSKFTVAY
                     TVDVVAKKLNH"
BASE COUNT          680 a          392 c          433 g          614 t
ORIGIN      
        1 aatgtagcgg acggacaagt ctgtctgaat caatacagct aaagaataac gcgtgccctt
       61 ttacttcttt tctatttgcc aggaaatatt tcgagttgga tgctctaact actttcctaa
      121 cacctccggt acaaatctag agaacttcca tatcgacggg agcatggaaa ccttagcgag
      181 aaaatcgctc acctgaaatt tcttcgtatt actaacctcg tacaagtatt ctggtgaatt
      241 ccctatcgtt ggcatagcat tctgatattt ccagattaat actggacaca ttagtttatt
      301 taaggaaaat gatataatat aatcaaagaa gcaagaatag atgtctacca ggttaaaaag
      361 agattttgga ctcagtgctc gaatgattct gagtttcata atcttgggaa tactatatgt
      421 cttattccta agcgtacttc attatcttgg aataggatac ataccgctcg cgataattgc
      481 atcggcaatg attctagcac aatggtattt ctccgataag attgtactgt ggacttctgg
      541 agcaaagata gtatcaaagg atgattatcc taagcttcat gaaataattg aaagacttgc
      601 tagtaaaaac ggaatcccaa aaccaaaagt agctgtagtt aatactcagg tacctaatgc
      661 ctttgccacc ggtaagagtc ccaagagttc tctagtggca gtaacaagcg gaattttgaa
      721 tttactggac gatgatgagc ttgaagccgt gattggacat gaattgaccc atgttaggag
      781 cagagatatt ctagtattaa cactagctag tgtattttct acagttgctt ggtatcttgc
      841 tcagttcgga ttttttgggg gaatacaagg tagaaataga gatagtgcgg gcacgacggt
      901 aatcgtaata gtagttgcaa tagtaacatg gattgtcagt ttcctaatca ttagagcaat
      961 atccaggtac agggaatatg cggcagatag aggcggagct gcgatgactg gaaatccaga
     1021 taagttggcc gacgcgcttc tcaagataag tggaaagatg aataatattc caacaaaaga
     1081 gatagagcgc gtacagaaat tgaatgcgtt cttcattatt cctgctctat ctggaaattc
     1141 aattgctaat cttttctcca ctcatccacc agttgaaaag cgtgttgcga aacttcggga
     1201 gatgaagact gggatggggc agctataaag caaaaagata aggcagaccg gaatcgcaga
     1261 tttattctaa aatggtacag caagatattc tattactatg agagttctga tgctgataca
     1321 actagttatt ttcctagaca aaatgaaatg cctacagaat aatgaaaagg agaagttaat
     1381 gatttaactt ctttgctaca acatctacag tgtaagctac tgtgaacttt gacccatcca
     1441 atgtatggaa tgataattca cttgcagcaa aatttgtgct gcctgacggt aaagacgttc
     1501 cactagacgg tttcaacaaa gtaaatgcta tggtcttgtt attcccatat ggggttaaaa
     1561 cgggctttcc atgtgcagcg tccactccag ttatactaga attgtaaaaa tgccacattt
     1621 ctacttctat tggcttgctc gacgcccacg tcacagttcc aacccaaact tttccgtcag
     1681 ttcgaggtgg caatacagtt actacttgat gagtttgatg gataggtaat ttcccagcat
     1741 ttgatatcgc tgtcttttgg gcagtataag tttcatcgtc taccactaat tcacttgact
     1801 gctgagaaat caaaggcaag atagtaccta cagatgctgc taaggtcagg ataagaattg
     1861 ttgatataat gattccagat gttacgttca cggagtatca tgagaggtag cgatatataa
     1921 gcacagcatc aaattctgaa gaaaaacaga aagaaataga aaaaatatga ttacgataat
     1981 actgatttaa cttcagtttc tatagcaccg ttgcatcgca agttaaccat ggcccatgac
     2041 gtcaaattca aaaatacagc aacaactcgt ccatagttgt gattgcctgc ctaataaaat
     2101 atcttaaaac ggatatctt
//
LOCUS       DATLQL010000153         1395 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_38420, whole genome shotgun sequence.
ACCESSION   DATLQL010000153 DATLQL010000000
VERSION     DATLQL010000153.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1395)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1395)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1395
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38420"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1072)
                     /locus_tag="VNB68_01585"
     CDS             complement(<1..1072)
                     /locus_tag="VNB68_01585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HVD36075.1"
                     /translation="MQRRTPYREPASQNIMATILQSLPEQSVLTKIEYEGPRIALYSK
                     NPGYLMKNAQIVSNMVNSVKKRIVIRTDESIRRSQEEVLDILDSTIRNEIGTTEVFFD
                     AALGEAVIYATRPFLRSTQNEDPANVDLVEKTGWKTIIRKAPSSLTAIRRVNKVLSNT
                     VDERIRFYKQVGERIFRSKLDEIAEASIITLGGFAEQGRSCMLLSTHESNILLDCGIS
                     FGAKETINSLPRFDITGLGMNDIDAIVLSHAHLDHTGFLPALFKFGYKGPVYCSEPTL
                     PLMILLHDKHISNFGDSWPYSNKDVNDLIAHSIPLTFGSVTDVSPDIKLVLSNSGHIL
                     GSSLVHLHIGNGDHNLVYTGDLK"
BASE COUNT          415 a          262 c          282 g          436 t
ORIGIN      
        1 attttagatc tccagtataa acaaggttat gatcgccatt tccaatatgc agatgtacca
       61 gcgaagatcc taaaatgtgt ccagagttac taagtacaag ttttatatcg ggagaaacgt
      121 cagttacact tccaaaagtt aaaggaatag aatgcgcaat cagatcattt acatccttat
      181 ttgaatatgg ccaagagtca ccgaaattac tgatatgttt atcatgcaag agaatcatta
      241 gcggtaatgt aggttcagaa caatatactg gtcccttata tccaaactta aataatgcag
      301 gcaaaaaacc tgtatggtct aaatgtgcat gacttagaac tattgcatca atatcattca
      361 tccccagtcc ggttatatca aatctcggaa gtgaatttat tgtctcctta gcgccaaagc
      421 tgatcccgca gtcaagcaag atattgctct catgtgtcga taataacata catgatcgac
      481 cttgttcagc aaatcccccc agggttatta tactggcctc agctatttca tccagtttgg
      541 atcgaaaaat tctttcgcct acttgtttgt aaaaacgaat tctctcatct actgtgttgc
      601 taagaacttt gttaactctt cgtattgcgg tcagagatga tggggccttt ctaattatgg
      661 ttttccagcc agttttttct actagatcaa cgttagcagg atcttcattt tgtgttgatc
      721 ttaaaaaagg tctagtagca tagatcactg cttcgcccag tgcagcgtca aagaaaactt
      781 ctgttgtacc gatctcattc cggattgtgc tatctagaat atctagaact tcttcttgag
      841 atcttcgaat tgattcatct gtgcgaataa ctatcctttt tttaacgcta ttgaccatgt
      901 tggagacaat ctgagcgttc ttcataagat aacctgggtt cttagaataa agagctatcc
      961 tcggaccctc gtattcaatc tttgtaagta ctgattgttc cggaagactc tgaagtattg
     1021 ttgccataat attctggctg gcaggttcac ggtaaggcgt tctacgttgc atttatttaa
     1081 tcactgctta gtagctatgt gagtccgaaa cagaagtaca catcgctttg ttaataatga
     1141 atggctttga accgttccat ttaaaaaatg tttcgcttga atagcaagag ggagcgaaaa
     1201 aatatagggg caatcaactg atatcttttc taaaacctta atcttgaaat actaagccga
     1261 ataatgatat cttactgata taatttggaa aatatagatc gttcaagtga gtcaggtgga
     1321 ggaggaggtt acggaggtgg gtaccgatct gacagaggct atggcggtgg aggaggttac
     1381 ggtggaagag gacga
//
LOCUS       DATLQL010000154         1823 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1812184, whole genome shotgun sequence.
ACCESSION   DATLQL010000154 DATLQL010000000
VERSION     DATLQL010000154.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1823)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1823)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1823
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1812184"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..461
                     /locus_tag="VNB68_01590"
     CDS             <1..461
                     /locus_tag="VNB68_01590"
                     /inference="COORDINATES: protein motif:HMM:NF006343.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="50S ribosomal protein L19e"
                     /protein_id="HVD36076.1"
                     /translation="MVVNLRKKRELIARILGLGLNRVRFEPDKLEDVGDAITREDMRT
                     LIKNRTVWTVKEKGTSRARAEAKRKTRHKRGLASGSKKGKKTARTGKKEVYVAKVRSL
                     RRHLRVLKDRNDISREVYWVMYKKIKGGQVRSSTHLRELAKQARSHSSTT"
     gene            complement(610..1419)
                     /locus_tag="VNB68_01595"
     CDS             complement(610..1419)
                     /locus_tag="VNB68_01595"
                     /inference="COORDINATES: protein motif:HMM:NF016312.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA];
                     GO_function: GO:0051499 - D-aminoacyl-tRNA deacylase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-aminoacyl-tRNA deacylase"
                     /protein_id="HVD36077.1"
                     /translation="MPFYTLVCSTSDIASSTVIDTLINLHYFAKLDKSTFYSKEYPNV
                     QLHLTTKSLLYADGLDEIYPDSDCFIFISQHRSASNIPTLTCHTTGNFGENLYGGRSK
                     EMGICYPWIQKQYLVELNTMKNHVPNYDITIEASHHGPTSSNKPTLFIEIGSTEKQWT
                     DKTAAQTVCTALLRVVSTKPGYCKKVAIGLGGTHYPTKFNKLLLESEYGLGSVAARHN
                     LPLVEESMLKQMISRSVEDVSCVVVDAKGMGGEKHRLLPLIEKTGLELVKL"
BASE COUNT          573 a          334 c          371 g          545 t
ORIGIN      
        1 tgatggtcgt aaatctaaga aaaaaaagag agttaattgc tcgtatactg ggtctaggac
       61 tcaatagagt tagattcgaa cctgacaagc tggaggatgt cggtgacgcg ataacgcggg
      121 aagatatgcg cacattgata aagaatcgta cagtatggac agttaaagaa aaaggaacgt
      181 cgagggcaag agctgaagct aaacgaaaaa cacgacataa gcgtggcctg gcttcaggtt
      241 ctaagaaggg caagaaaact gctagaactg gtaaaaaaga agtctatgta gctaaagtta
      301 gatctttaag acgccatctc agggtgttaa aggatcggaa tgatatcagt agggaagtgt
      361 attgggttat gtacaaaaag attaagggtg gtcaggttcg ctcttctact cacttgagag
      421 aactagcaaa gcaagcgaga tcccatagct caactaccta ataattttta cttccgctcg
      481 tctcgaattc tattatgcgg ctaccgccgc tatttccgcc ctcattttct attagcttcg
      541 ctaagtacaa gtaatcaatt ttggcaaggt ctatcacaat tgagtggtca ctttcattat
      601 tttatgtgtc tataacttga caagttcaag tcctgttttt tctataagcg gcaagagtct
      661 atgcttttca ccacccatcc ccttagcatc tactacaaca cacgaaacat cttcaacact
      721 ccgagatatc atttgtttaa gcattgattc ctcaacaagc gggagattgt gtcttgcggc
      781 tactgagcct agaccgtatt ctgattctaa aagaagttta ttaaatttgg ttggatagtg
      841 tgttccaccc aggcctattg ctactttttt acaataaccg ggttttgtgg atacaaccct
      901 taggagggcc gtacatacgg tttgagccgc cgttttatct gtccattgtt tttccgtcga
      961 gccaatttct atgaaaaggg tgggtttgtt tgatgaagtt ggaccatgat ggctcgcttc
     1021 tatagtgata tcatagttag gaacatgatt tttcatggtg ttcaattcta caagatattg
     1081 tttctggatc catggataac atatgcccat ctccttagat ctgccaccgt ataaattttc
     1141 accaaaattc cctgttgtgt ggcaagtcaa tgtaggtata ttgctggccg atctatgttg
     1201 agaaataaaa atgaaacaat ccgaatcagg atagatttcg tccagtccat ctgcatatag
     1261 caatgatttt gtggttaaat gcaattgtac attaggatat tccttcgaat aaaaggtgga
     1321 cttatccaac tttgcaaaat aatgtaaatt gataagagta tctatgacag tagagcttgc
     1381 tatatcagaa gttgagcata ctagagtata gaatggcata aatgcaagtt tatttgccta
     1441 ctccgtattt aaattcatga ttcatgacac aaacaggatt gacaagtaat agttgagcta
     1501 ttgatccaat ctagagtcat tgaggctacc gaaggattaa agcctcagtt tccaaataaa
     1561 cttgcaaaat atttgaaatc ccctgtaacg ccaatttgga ttttatgttt ttggaacact
     1621 ggaataagaa tatttaatct cttgagattg cataaaaatt gcacatcatg cataggcaac
     1681 ttcctatagg ctcaacaaat aaggaaattt tagaatttat cagttcagta acaaagcctt
     1741 ggagtgccat aaaaaatcag tagtaacaaa cgtaacgact tccatttaga ccacaaggaa
     1801 agacttcgga taggtactcc ata
//
LOCUS       DATLQL010000155         1145 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_395400, whole genome shotgun sequence.
ACCESSION   DATLQL010000155 DATLQL010000000
VERSION     DATLQL010000155.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1145)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1145)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1145
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_395400"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..273)
                     /locus_tag="VNB68_01600"
     CDS             complement(<1..273)
                     /locus_tag="VNB68_01600"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HVD36078.1"
                     /translation="MITDKVARKKTFSKILVAIHESSKSADKAVVYATRIAKDYNAIL
                     VVLYVVRTQTNSETVTPSHVIDFKVQAQAYLTDISEKIHKYNESENI"
     gene            732..>1145
                     /locus_tag="VNB68_01605"
     CDS             732..>1145
                     /locus_tag="VNB68_01605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HVD36079.1"
                     /translation="MSKAFRGMSQPQMTHLRPEIVLIEHSDPGAEDVHLSTNTYALLN
                     AGRMLLVDTNVSHLLPFVRQLSDDGFSPAALVITHRHVVGLGDALSDLKTEFKIPLLL
                     HRIDAKHKQAVATGIPFENPVGHRVLSEFGFEALLF"
BASE COUNT          316 a          218 c          228 g          383 t
ORIGIN      
        1 aatattctct gactcgttgt atttgtgtat tttttccgat atatctgtaa gatatgcctg
       61 cgcttgcacc ttaaaatcga ttacatgact tggggttaca gtttctgaat tggtctgtgt
      121 tcggacgacg taaaggacta ctagtattgc attataatct ttggcaattc tagttgcata
      181 aacgactgct ttatctgccg atttactgga ttcatgaatg gctacaagaa ttttggaaaa
      241 tgttttcttt ctcgcgactt tatctgttat caacttactg ctttattttt gtcgatagtt
      301 cctaaaaagt attaaagctt tccattattt agaatattcc tatgtctttt taacaagtct
      361 ttaggatatt gtagggattc gaaccctgca tgtattagag ttccactaac ttctatttag
      421 cttttcgttc tgaagaacaa ttgaagttgt atgaaacaag aattgccatc aagggagctc
      481 tgggatttga agcagtagtc gatgagccaa atgcagtaaa gccgtaatgg ctaaaatatt
      541 ttaggtcaat ggagccaaat tattccagaa agtacaccag aatatggtaa taagtaataa
      601 taaaatggtc ctaactacag cactaccttg caaaggctac gtgttcatgc atttcaacta
      661 acttagccat ttcggaactt ctattttcag ccgaatactt aattaattct taagttctta
      721 atcatttcat catgtctaag gcatttcgag gcatgtcaca gccacagatg acgcacttac
      781 gccctgagat agttttaatt gaacatagcg atcctggagc agaggatgta cacctttcga
      841 ctaatacata tgcgctgctg aatgctggtc ggatgttact ggttgacacg aatgtttcac
      901 atctgctccc ttttgtgcgg cagttgtctg atgatggatt ttcaccagct gccttggtga
      961 ttacacatcg acatgtggta ggattaggtg atgctttaag tgacctaaag accgaattca
     1021 aaattccttt attgcttcat cggattgatg ccaagcacaa gcaggcagtg gccacaggta
     1081 tacccttcga gaatcctgta ggtcatcgag tcctcagcga attcggtttt gaggcgctac
     1141 tattt
//
LOCUS       DATLQL010000156         1362 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2525370, whole genome shotgun sequence.
ACCESSION   DATLQL010000156 DATLQL010000000
VERSION     DATLQL010000156.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1362)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1362)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1362
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2525370"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            953..>1362
                     /locus_tag="VNB68_01610"
     CDS             953..>1362
                     /locus_tag="VNB68_01610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36080.1"
                     /translation="MKGNDIGRKDWRRNISNADNLLLVNSTLQQPIAGEEYRDCAKDR
                     LCMLLEAAKCEQTRMVQHEPHTNRYCTIGALLKSLGYEYKPSQKFASDSRKDISDPHP
                     AILELASLLNIVWIDVADIGDLNDNGACFRDIQR"
BASE COUNT          462 a          265 c          258 g          377 t
ORIGIN      
        1 tccacatata ctggacttac tatctcaggt ttgcgtatct tttttttctt ttcttcaatc
       61 acttgtcgaa tgtacttctt aacttcccct atagtagcag tagctgtcaa tttcgaagct
      121 acacaagcaa gtcgattata ataaggactg aaataccatc cagagaggga gagatagtta
      181 tagaatattt aacatacttt aactgtggac atgtcacaac tcttaaggat ggtacaacat
      241 acagacaatt tgctttgatg gccactgaaa ataactcaat tcctatttct gacgtaaata
      301 caaaggaccc aacaatgaga atgactgaag gagatcgcgt taaaattaca gtatacaatt
      361 caaattcctc aaagcccccc cactctttgc acatgcatca atccattcag gaataatgga
      421 tggagtggcc ggtatgtctg gttattcacc tgggggtcat tattcagcca aatttatgct
      481 gtcaaaagcc ctgccttctc atacagagat caccctatac acctagagac aggccagcaa
      541 ggggtattta acggcgccct ccacattgtt gttcctactt ttgtataatc aacctcgttt
      601 tttctgaaca gataagcagc taaacgtaat tgagaattct ttgaggaatt atctcaaaca
      661 caattaaact cgatctttat tacatatgat ctagaatctc gaggtaaggg actaaaatat
      721 ctcgactttt gaaaaatact atgttattga gtaatataat aaaacgtctt atatatagaa
      781 cagtaaaagt tgtctcattg aataacacga gaattctcat atttatcaca tataataaga
      841 aaattcttgc attgctacag taactcaaga tacgcaccga tagagcaatg tataggccat
      901 gacgcaataa tgactataaa acggttctta gatggtgtga gagatggggc aaatgaaagg
      961 taatgacata ggcaggaaag attggcgtag gaatatttct aacgctgata atctactgtt
     1021 agtcaactca acgttgcagc aacctatagc gggagaagaa tacagggatt gcgccaaaga
     1081 tagactatgc atgctactag aggccgccaa gtgtgagcaa acaaggatgg tacaacatga
     1141 accacataca aacagatact gcactatagg agcactcctg aaaagccttg gctatgaata
     1201 taaacccagt cagaagtttg ctagtgacag tagaaaagat atctctgatc cacacccagc
     1261 aattctagag ctagccagtc tgcttaatat agtatggata gacgtggcag atataggaga
     1321 tctcaatgat aacggtgcat gctttcgaga tattcaaaga ta
//
LOCUS       DATLQL010000157         1227 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1104283, whole genome shotgun sequence.
ACCESSION   DATLQL010000157 DATLQL010000000
VERSION     DATLQL010000157.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1227)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1227)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1227
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1104283"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            244..1071
                     /locus_tag="VNB68_01615"
     CDS             244..1071
                     /locus_tag="VNB68_01615"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HVD36081.1"
                     /translation="MKIFFEKSLIYSVIAVYLFITVAPLVWVLSTSFKPNQEAISFPP
                     KFLPDHPTLENYFFVLTDSKLVLSLINSLIVSVGSTALSVTVSALGGYAFARYDFKGK
                     NLLMSTILALFMIPVVINIIPLYIMLANVGLLNSLVALVMTFQILIIHLNIFLLKNYF
                     ESLPKELEEAALIDGCSKLGALIRVTIPMSLPGFLIAAILSFRFSWNEFVLPVVIANK
                     PDSMIFQVALYQFISLYRIDWGYLTAGINIAIIPVVVLMLIFQKKMIRGLTLGAVRG"
BASE COUNT          344 a          251 c          242 g          390 t
ORIGIN      
        1 cgaccgcatc tctatacatg tacaggcaag ctttcgagtt tggactgtta tctaaagggt
       61 ccgttgtagg gctattcctc gtgggtgtca atttagtgtt agcatattcc tacctcaaac
      121 ttttcaggaa taacggatct agggttgaag ctgcaccagc gtgagcattg ttccccctaa
      181 agaccttgct caggacacta cctcaaatgc aatattcact accaaatcac aggagattgc
      241 taaatgaaga ttttctttga gaagagtttg atttattctg ttatcgctgt ctatctcttc
      301 ataaccgtgg ccccactcgt gtgggttctt tccacatctt tcaaaccaaa ccaagaagca
      361 ataagctttc ctccaaaatt tttgccagac cacccgacct tggaaaacta tttttttgtc
      421 ttgacagact caaaacttgt tttaagcctt attaatagcc tgatagtgag tgtggggagt
      481 acggcactaa gtgtgactgt gagcgcactt gggggttacg catttgcgag atatgacttt
      541 aaaggaaaaa atctgttgat gagcacaata ttggcattgt tcatgatccc tgtggtcata
      601 aacataatac cattatacat tatgttggct aacgtaggtc ttctaaattc acttgtagca
      661 cttgtgatga cgtttcagat tctcattatt catctcaata tttttttgct aaagaattac
      721 tttgaatctt tacctaaaga actcgaagag gcagcactaa ttgatggttg ttcaaaatta
      781 ggtgcgctaa ttcgcgtcac gatacctatg tcgcttcctg gtttccttat agctgccatc
      841 ttgtccttta gattttcttg gaacgaattt gtgttacctg tggtaattgc taataaaccc
      901 gattccatga tatttcaagt ggcattgtac cagttcattt cgctgtacag aatagactgg
      961 ggttacttga cagccggaat aaacatagct attattcccg tcgtagtttt gatgctaata
     1021 ttccagaaga aaatgatcag aggactgacg ctgggcgctg tcagaggcta gtcggcaaca
     1081 tgctaacggt aattgccaaa gatagtactc gcaaaggacg tgctttcata gctgggaact
     1141 ctgtcaataa tattaaattt tttcgaaatt tatgaaatcg ctaacttcaa aaatactcaa
     1201 cgcactggca caaaaaaagc cactttt
//
LOCUS       DATLQL010000158         1044 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1993902, whole genome shotgun sequence.
ACCESSION   DATLQL010000158 DATLQL010000000
VERSION     DATLQL010000158.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1044)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1044)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1044
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1993902"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            124..>1044
                     /locus_tag="VNB68_01620"
     CDS             124..>1044
                     /locus_tag="VNB68_01620"
                     /inference="COORDINATES: protein motif:HMM:NF024864.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupredoxin domain-containing protein"
                     /protein_id="HVD36082.1"
                     /translation="MQNKLTDHTGWNYFLYISIGVSLLALIFGFLIVFDGVIFSNSQD
                     GRETSDSHLHQALAQPAGDYPIADAQRMFTNDTAIIKKISLPPYVFDMAQLPKEPVAG
                     QPTLFVFNLLKEAGNVWLWHTDYHIMIKDSKGQPLAVFPNNHGHGSVIQFEYVFPYQG
                     KYTVDVIFGQQQGSPNFMIEPKVIRKANFDVNVVSAPQQTSLANATLSNGSEIKDISM
                     KVESWKFTPSTIEVKRGDHVRLHLTTAQDEVSLYTGHGFGIDGYNVNAFLVKGAEQTI
                     EFIADKPGTHTFRCTSFCSAPEAAMENHFNM"
BASE COUNT          338 a          196 c          203 g          307 t
ORIGIN      
        1 ttgtttatat ccttattgta gtcgctggat ttttgaataa tataatagat agccacttga
       61 gttaccaatc cagcccagtt tccgactata atgtatataa tgtttaatga gcgatggatt
      121 ctaatgcaga ataagttaac cgaccatact ggctggaact attttctcta tatatcaata
      181 ggagtgtctt tattagcatt aatattcggg ttcctaattg ttttcgatgg agtaatcttt
      241 agcaattccc aagatggaag agaaaccagc gatagtcatc tacaccaggc tttggcacaa
      301 ccagctggag attatcccat tgctgacgca cagagaatgt ttacaaatga cacggcaatt
      361 ataaagaaaa ttagcttgcc gccatatgta tttgatatgg cacagctgcc aaaagaacca
      421 gtagcaggtc agcccacgct ttttgtattc aatctgttaa aggaagcagg caatgtatgg
      481 ttatggcata ccgactatca tattatgatt aaagattcaa aaggacagcc tttagctgtt
      541 ttcccaaata atcatgggca tggaagcgta attcagtttg aatatgtatt cccttaccag
      601 ggaaaatata ctgtagatgt gatttttggt caacagcaag gctcacctaa tttcatgatt
      661 gagcccaaag ttattcgaaa ggcaaatttt gacgtaaatg tcgtcagtgc ccctcagcaa
      721 acatcccttg ccaatgccac tttatctaat ggttcagaaa taaaagatat ttcgatgaaa
      781 gttgaatcat ggaagtttac tccatccaca attgaagtta agaggggaga ccacgtaaga
      841 cttcatttga caacagcaca agacgaagtt tcactctata caggacatgg gtttggaatc
      901 gatggataca atgttaatgc attcttagta aaaggagcag aacaaaccat tgaatttatt
      961 gcagataaac cgggaactca tactttcaga tgcacatctt tctgttcagc acctgaagca
     1021 gcaatggaga accattttaa catg
//
LOCUS       DATLQL010000159         1187 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_926655, whole genome shotgun sequence.
ACCESSION   DATLQL010000159 DATLQL010000000
VERSION     DATLQL010000159.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1187)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1187)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1187
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_926655"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..137)
                     /locus_tag="VNB68_01625"
     CDS             complement(<1..137)
                     /locus_tag="VNB68_01625"
                     /inference="COORDINATES: protein motif:HMM:NF013128.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L44e"
                     /protein_id="HVD36083.1"
                     /translation="MKMQKEMRKFCPKCKTHTDQAVAIYKKGKDRKTAEGARRHAEDK
                     KG"
     gene            599..1030
                     /locus_tag="VNB68_01630"
     CDS             599..1030
                     /locus_tag="VNB68_01630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HVD36084.1"
                     /translation="MSFAIQIGASKERTVNIDSNQTTSFLWEGENVLSTPSMISELEE
                     TCRVLLKEQFITDVEWDSVGTLVNVRHLASTPVGAQVFFKAEVISVEGRRVQFRVEAA
                     DNIEKIGDGTHERFIIHIPKFRARIQGKQKQLEVHEKSDKL"
BASE COUNT          376 a          201 c          263 g          347 t
ORIGIN      
        1 ccctttttat cctcagcatg ccttcgcgca ccttcagcag tttttctgtc tttacctttc
       61 ttgtatattg ctactgcctg atctgtatgg gttttacatt tagggcagaa tttacgcatt
      121 tccttctgca tcttcataat aatacgatga tatcagatca gggtaattta aggacactgt
      181 cagttagtct ttaatcacaa ttgcatatgc agaagaactg atttttctag aaaatctaat
      241 atacttagac cgacataacc agggatgtgg tattagaagt cttcatacgg cagatggttc
      301 ctataagtat ggatagcttt ggtgtgtgga tacctctagc attcggcctt agtattggtt
      361 tggtatatgc tatagtgtca gggctaagac ggcaacggta aattcatctc catctttttc
      421 ttttttgcac aagaaagata aaacgaaact gggaatcacg atggttaggc ttgtggatct
      481 atgactcttt tggacaatag ataccattta ttttgactgg tttctaccgg agatatggtt
      541 ctatacgcga ttgggctcta agaaaaatct taagaccctg gccttgctag catagcagat
      601 gagttttgca attcaaattg gcgctagcaa agaaagaacc gttaacattg actctaatca
      661 aacaacaagc tttctttggg aaggcgaaaa cgttttgtct acgccgtcaa tgatatctga
      721 attagaggag acatgcaggg tactgttaaa agagcagttt attaccgatg tagaatggga
      781 ttccgtcgga acactggtga atgttagaca tttggctagt acacctgtag gcgcacaagt
      841 tttttttaag gctgaagtga tatctgttga aggtagacgg gtacaattta gagtggaggc
      901 agcagacaat atcgagaaga taggggatgg aacacacgag agatttatta tccacattcc
      961 aaagtttaga gcaagaatac aaggcaaaca aaagcaatta gaagttcatg aaaaaagtga
     1021 caaactataa aagaggcttg agaaaaatgt gtaatattat actaggtgaa tatggaaatg
     1081 gcatcagttc aaactacggc tggcggaatg ccagtcataa ttttaaagga agggactaaa
     1141 gaaaacaagg gtaaggacgc acaaaagaac aatattaccg ctgctaa
//
LOCUS       DATLQL010000160         1893 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_751702, whole genome shotgun sequence.
ACCESSION   DATLQL010000160 DATLQL010000000
VERSION     DATLQL010000160.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1893)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1893)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1893
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_751702"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..514)
                     /locus_tag="VNB68_01635"
     CDS             complement(<1..514)
                     /locus_tag="VNB68_01635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiA family prenyltransferase"
                     /protein_id="HVD36085.1"
                     /translation="MIPQVTVTDRLKNYYELTKPKIWYLLVFTAFGSAVTASYLTDTF
                     LSPLQWVFLLMGIITGSAAADALTGYNDRDIDAIMDRTKARPIPSGRISPKNALIFGL
                     LLAAISLFCAWSINYLTLGLMAFGLFDNIIVYSKWLKRKSQTNIILGGFSGGIPALIG
                     YVAVTTENIGI"
     gene            708..>1893
                     /gene="thsB"
                     /locus_tag="VNB68_01640"
     CDS             708..>1893
                     /gene="thsB"
                     /locus_tag="VNB68_01640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thermosome subunit beta"
                     /protein_id="HVD36086.1"
                     /translation="MESIQATAGGMPVLILKEGTKESKGKEAQRNNFTAAKLIAEMVK
                     TCLGPRGMDKMLVDTLGDVTITNDGATILKEMDVQHPAAKMMVEVAKSVDNEVGDGTT
                     SSVVFAGALLEKAEELVNKDVHPSVIVDGYTAAAERALELLEKIGIKIDVNDRNVLTN
                     IARTSMYSKLVSDDSPTLAKMVVDAARQVAESVDDGKKLRVDLDNIKVEKKPGTSIRD
                     SKLIKGIVLDKEVVHAGMPKKIEKAKIALINSALEIEKTEMSSEIRINDPQQMQMFLE
                     EENRMLKSMVDKIKGAGANVVLCQKGIDDLAQHYMAKEDILAVRRVKESDMSKLAKAT
                     GARIINNLDDFTSKDLGSADLVEERKVETDKWVFIEGSKNPKAVTILVRGGSQRVVDE
                     ADR"
BASE COUNT          680 a          297 c          424 g          492 t
ORIGIN      
        1 ctatccctat attctctgtt gtaacagcta catatcctat taatgctgga ataccaccag
       61 agaagcctcc aagtattata ttggtttgac tctttcgttt caaccacttg ctgtatacta
      121 ttatattatc aaaaaggccg aatgccataa gtcccaaggt caagtagtta attgaccatg
      181 cacagaagag ggatatagct gctaaaagca gaccaaaaat aagtgcattc ttgggagaaa
      241 tccttccaga aggaataggg cgagcttttg ttctatccat aatggcatct atatcacgat
      301 cattatatcc ggttaaagcg tccgcagctg cagacccagt aattataccc ataagaagaa
      361 agacccattg gaggggggac agaaaggtat cagtcaaata ggatgcagtt acagctgacc
      421 caaaagcagt aaaaaccaag agataccaaa tttttggctt agtcagttca tagtaatttt
      481 taagccgatc tgtgacagtt acttgtggaa tcaataattt gtacctcgac agatttatgg
      541 ttagaggcaa tatgaatgct caattatttt aacatgaatt aatctggtaa tattgggcct
      601 acctgagcta acatcgacca aatctgatac acaaaccgaa ttggctctct aaaagtataa
      661 aagaggcatg ataaaatcaa tggtattcta gtaaggtgat atgtaagttg gaatcaattc
      721 aagcaacagc tggtggaatg ccagttttaa ttttaaagga aggaaccaaa gaaagtaaag
      781 gtaaagaagc acagcgaaat aactttacgg cagcgaagct tattgccgaa atggtaaaaa
      841 catgtctagg tcctagaggc atggataaaa tgctagtaga tacacttgga gatgtcacaa
      901 ttacaaatga tggtgctact attctcaaag aaatggatgt tcaacatcct gcagcaaaga
      961 tgatggtcga ggtagccaaa tctgtagata acgaggtagg agatggtact acgtcatcag
     1021 tggtttttgc tggggcgtta ttggagaaag cagaggagtt agtaaataaa gacgtacacc
     1081 catctgttat agtagacggt tataccgcag ctgcggaacg agcccttgaa ttattagaaa
     1141 aaataggcat aaaaattgat gtcaatgata gaaatgtcct gacaaacatt gcaaggacaa
     1201 gcatgtattc aaaacttgtt tctgatgata gtcctacatt agctaaaatg gtagttgatg
     1261 cggcaaggca ggttgctgaa agtgtcgatg atggcaagaa actgagagta gatttagaca
     1321 atataaaagt tgaaaagaaa ccaggtactt ctattagaga tagtaaacta atcaagggaa
     1381 tagttctgga taaggaagtt gtacatgcag gtatgccaaa gaagatagaa aaggcaaaaa
     1441 ttgctctcat aaactctgcg ctagaaatag agaaaacaga gatgagttct gagataagaa
     1501 ttaatgatcc tcaacaaatg caaatgttcc ttgaagaaga aaataggatg ttaaaatcaa
     1561 tggttgataa gattaaggga gctggcgcaa acgttgtatt atgtcaaaag ggcattgatg
     1621 acttggcaca acattatatg gcaaaagaag acatacttgc cgtcagaaga gtcaaggaaa
     1681 gtgacatgtc aaagctggct aaagcaaccg gtgccagaat tataaataat ttagatgatt
     1741 ttacttctaa agatttaggt tcagccgatc tagtagagga gagaaaagtt gaaacagata
     1801 agtgggtttt cattgaggga tccaaaaatc caaaggctgt tacaattttg gttagaggag
     1861 gatctcaaag agttgtcgat gaggctgata gat
//
LOCUS       DATLQL010000161         1381 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_40322, whole genome shotgun sequence.
ACCESSION   DATLQL010000161 DATLQL010000000
VERSION     DATLQL010000161.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1381)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1381)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1381
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40322"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..185
                     /locus_tag="VNB68_01645"
     CDS             <1..185
                     /locus_tag="VNB68_01645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36087.1"
                     /translation="AVYHHELVYGRILVAILVKEEDLVMEMRDAFHMCYNYSNPSQNY
                     DYCYKFHGNKQDRLHY"
     gene            605..943
                     /locus_tag="VNB68_01650"
     CDS             605..943
                     /locus_tag="VNB68_01650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36088.1"
                     /translation="MNRLRLAVADCSTPYILYVYIIRIYNRRIRYTYIEKPKIARDKT
                     EKQKLTLGIERGIIDRAKAAGINISAITEHLLRSITYDPKGDTTEHVANAYQALFNAT
                     WPHLDKYDAL"
     gene            1114..1257
                     /locus_tag="VNB68_01655"
     CDS             1114..1257
                     /locus_tag="VNB68_01655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36089.1"
                     /translation="MQNLILAVSEAAKKNQEKVRELDFALHLVQALLDDSNNQEKDEN
                     NKN"
BASE COUNT          448 a          241 c          279 g          413 t
ORIGIN      
        1 acgctgttta tcatcatgaa ctggtttatg gaaggattct tgttgcaata ctggtaaagg
       61 aggaagattt ggtaatggaa atgagggatg cattccatat gtgttataat tattctaatc
      121 cttctcagaa ttacgattat tgttataaat tccatgggaa caaacaggat aggctgcatt
      181 attagtatta gagttctgag tttttttatt gttcttcctg aataacaaag gatcagttgg
      241 ctcagggaag ctaccatttt gcctaccaat tatatattca tatggcctaa cgatcatgcc
      301 gttcccaacg tgaagattcc tattgtgtct gttagcggtt gaccttcttg tgaaaccgtc
      361 gccgcatatt gtgcatgccc aagtatcttt gcaggtcata ctcattatta tttacaaaag
      421 ctttctttaa aaaaaaagaa agagcaaagt gcaacactgt gcaacagtgt acagtaggat
      481 aacacagcta gtacagtagg ataacacagc tacattatat gttatacgct cactattatt
      541 cttgttctaa tctgcacctt gctaaaattg gataagtact agttgtatct tatgtaatac
      601 tttgatgaat agactccgct tagctgtagc ggattgtagt accccgtata tattatacgt
      661 atatattata cgtatatata atagacgtat acggtatacg tatattgaaa aacccaaaat
      721 agcaagggat aaaactgaaa agcaaaagct cacgcttggc attgagagag gtattattga
      781 tagagctaaa gcagctggaa tcaatatttc agcaattact gaacatcttt tgaggtccat
      841 aacttatgac ccgaagggtg atactacaga acacgttgct aatgcgtatc aagcattatt
      901 caatgctaca tggccacatc ttgacaagta cgatgcactg taaaagtggg tgtagacgta
      961 gaccacaatg ctttcttaaa gatatcttca gaagtgtgta tatccaaatc cgtatttctt
     1021 atataggagc cgctggctgg tgagggaaga cgaccttcag cgtttcctgt aaacgaggag
     1081 ctagtaccat acctctacga gcaaaaggtc atattgcaaa acctaatttt ggcagtgtca
     1141 gaggccgcca agaaaaacca agaaaaagtc agagagctag actttgcatt acatcttgtc
     1201 caagccttgt tagatgatag caataatcaa gaaaaagatg aaaacaataa aaattgatat
     1261 cgtgttgggt tattgaaagc ctacaatgca gttacatgtc ctagaatact tagaaatagg
     1321 acgtacatga tcgtagattc tagggtgtgc cattaagcgt cctcgagatt tttgagatcg
     1381 a
//
LOCUS       DATLQL010000162         1595 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_396496, whole genome shotgun sequence.
ACCESSION   DATLQL010000162 DATLQL010000000
VERSION     DATLQL010000162.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1595)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1595)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1595
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_396496"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            256..822
                     /locus_tag="VNB68_01660"
     CDS             256..822
                     /locus_tag="VNB68_01660"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HVD36090.1"
                     /translation="MGHHSYPIDLLSANDTSGIGSNALNYLFTSEIGSKIGHFQAKQQ
                     RQSSQLLQSAHERQPQEHSTNILVIDDEADTLYTYESFLSDEGYNVKTFSDPQEALEH
                     FFQLPDPSSHYTLALLDIRMPKLNGLQLFHKMKALSPKIKIMFCSALDVAQEVTSVFP
                     DIDHEHFMRKPVEREHFINKINSTLDKQ"
     gene            complement(867..1115)
                     /locus_tag="VNB68_01665"
     CDS             complement(867..1115)
                     /locus_tag="VNB68_01665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36091.1"
                     /translation="MPCNTDLSTAFCVPSFDITCLFDVEISRYISCANLSQNRCGFGG
                     MGDGFDLVKPPSNNRGLISGSMDGFWSLLLQVVSFKVF"
BASE COUNT          521 a          316 c          302 g          456 t
ORIGIN      
        1 tggagtatcc taaattttga ggaatcttca tttcattaac tacgaccaat caattccatt
       61 actgaacatt agcgcgagta aaccaaatgt ggtaaattac attgtaaggg aaagcaagaa
      121 acaagtgtca tcgttcacta atatttgaaa ttaatacatc aagtttaaaa atatgcagat
      181 ctttaggata taagaatctc tctaaatcgt tattaataac gataaccaca ttgtcgccaa
      241 tgacggttgg gcataatggg gcatcatagt tatccaatag atcttctgtc tgctaatgat
      301 acctctggaa ttggttctaa tgcccttaac tatctattta cctccgaaat agggtcaaag
      361 atagggcact ttcaagccaa acaacaacga caatcctcgc aactgcttca gagcgcgcac
      421 gaacggcagc cacaagaaca ttctaccaac atcttagtga tagatgacga agcagacaca
      481 ctgtatacgt atgaatcctt cttatctgat gagggatata atgtgaaaac tttttccgat
      541 cctcaagaag cactagaaca ttttttccaa ctacctgatc cttcttctca ttacacgcta
      601 gctcttttgg acataaggat gccgaaatta aacggacttc agctgttcca taagatgaaa
      661 gcattgagtc ctaagattaa gataatgttt tgttctgcac tcgatgtagc ccaagaagtg
      721 acaagcgtat ttcccgatat agaccacgaa catttcatga gaaaacctgt agaaagagag
      781 cattttatca acaagataaa ttcaacactt gacaagcaat agcactcatc ttggaagatc
      841 ttaagtccat ggcgtggaat aaaaaactag aaaactttga agctaacaac ttgtaataag
      901 agcgaccaga atccatccat agaaccacta ataagccccc tattattgct gggtggtttt
      961 actaggtcaa atccgtcgcc catcccaccg aacccgcatc gattttggga caggtttgca
     1021 caagatatgt atctactaat ttcgacatca aagaggcaag taatatcaaa cgagggtaca
     1081 caaaaggctg ttgacagatc tgtattacag ggcaatagtt acaagtgctt ctataaaggc
     1141 taacgacacc gattgttcgg attttctttt ttcctttcaa gttagccgaa tatttgagat
     1201 agagattttc aatctcgcta tcatgtcaca ccgacccagt ttaagctgat agaactcaag
     1261 gataagaaga aaaaagatga gattggatga aattatatga tttctaaggc ataggggtcg
     1321 gttggactat atcgtccagc tagtcagctt agctctctgg gtctgacctg aggtcatgga
     1381 aataggcata agccaaatgc tcgttgggac ctaatgtgac tgctccgagt agtagtactg
     1441 atactgccat gatcatggca aagccaatgc taaatgtgac tacttttaga tgtactgctg
     1501 ctgctgctgc tattgcattt acaatttttt gttttactta catattctaa cgagtatgaa
     1561 gaagactgta tagtctataa gtttagatga atatt
//
LOCUS       DATLQL010000163         1138 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_40590, whole genome shotgun sequence.
ACCESSION   DATLQL010000163 DATLQL010000000
VERSION     DATLQL010000163.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1138)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1138)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1138
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40590"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..684
                     /locus_tag="VNB68_01670"
     CDS             <1..684
                     /locus_tag="VNB68_01670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HVD36092.1"
                     /translation="RLSVNVDGKEVEPVLNDISLFPRKSATLMEYILKINGNDIWHDN
                     SDGVIISTPIGSTAYCMSAGGPMVLQRSQVFVIVPVNSMDNTRRPLIVPNTDRLEIED
                     ILSRYLCEVILDGGKRVAVRKNIVCEKHEFPAKFVKLIKDSPMDIIAKKVKLAGDLLD
                     MPPSAKLILKTLEYEGELSQKDLSKRTMLPERTIRLSLSHLIQRGYVRKKTSLRDARQ
                     KTYELNLKL"
     gene            complement(686..>1138)
                     /gene="pyrG"
                     /locus_tag="VNB68_01675"
     CDS             complement(686..>1138)
                     /gene="pyrG"
                     /locus_tag="VNB68_01675"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: protein motif:HMM:NF012345.4"
                     /note="CTP synthase; cytidine triphosphate synthetase;
                     catalyzes the ATP-dependent amination of UTP to CTP with
                     either L-glutamine or ammonia as the source of nitrogen;
                     in Escherichia coli this enzyme forms a homotetramer;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthetase"
                     /protein_id="HVD36093.1"
                     /translation="ICFGFQLSLIEFARNQCAITDASSQEFNPDDDNSLVKFMPEQEH
                     ALNLGGSMRLGKHDITIVHRTLADKIYQNNKIQRRHRHRYEFNQDYRPTIEESGMVLS
                     GHSDKGRRIEILEIPSNKFFFAVQYHSEFSSIPGRPEEAFKAFITSCA"
BASE COUNT          362 a          203 c          227 g          346 t
ORIGIN      
        1 agactttcag ttaatgtaga tggtaaagaa gttgaaccgg tactaaatga tatttctctc
       61 tttccaagaa aaagtgcaac cctaatggaa tacatattga aaattaatgg caatgatatc
      121 tggcatgata acagtgatgg agttatcatt tcgactccaa ttggatcgac tgcctattgt
      181 atgtccgcag gaggcccaat ggttttgcaa aggtcgcagg tatttgtcat tgttccagtt
      241 aattctatgg acaatactcg cagacctctt atagtcccca ataccgatag attggaaatt
      301 gaagatatac tcagcaggta tctgtgtgaa gtaatcctgg atggaggaaa aagggtagct
      361 gtcagaaaaa acattgtatg tgaaaaacat gaattcccag caaaatttgt gaaattgatt
      421 aaggattctc ccatggatat tattgctaaa aaggtaaagc tggcaggaga tttactcgac
      481 atgccgccaa gtgccaaatt gattctaaaa acacttgaat acgaaggtga attgagtcaa
      541 aaggatctga gcaagagaac gatgcttcca gagagaacta taagattatc attgagccat
      601 cttatccaac gcggatatgt taggaaaaag acctccttgc gtgatgccag acaaaaaacg
      661 tatgagttaa acctaaagct ctgacttagg cgcaagatgt tataaacgcc ttaaaagctt
      721 cttctggtct acctggtata ctgctaaatt cagaatgata ctggacggca aaaaagaact
      781 tgtttgacgg tatttcaaga atttcaattc ttctaccttt atcggagtga cccgataata
      841 ccatcccact ttcttcaata gttggtcggt aatcctgatt aaattcatat ctatgtctat
      901 gtcttcgttg gattttatta ttctggtata ttttgtcggc caatgtcctg tgtactattg
      961 ttatatcatg ttttcccaat ctcattgaac caccaaggtt aagagcatgt tcctgttctg
     1021 gcatgaattt taccaatgag ttatcgtcat cggggttaaa ttcctgggaa ctagcatcag
     1081 ttatggcgca ttgatttctt gcaaattcaa ttaaagataa ttgaaatccg aaacaaat
//
LOCUS       DATLQL010000164         1514 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_217961, whole genome shotgun sequence.
ACCESSION   DATLQL010000164 DATLQL010000000
VERSION     DATLQL010000164.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1514)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1514)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1514
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_217961"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..262
                     /locus_tag="VNB68_01680"
     CDS             <1..262
                     /locus_tag="VNB68_01680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36094.1"
                     /translation="VVPIKQVDKQIKLTDNAKTELQSIGMMDDKGKLKLKGVSPKMLK
                     RMKLESVDCPVLKAEVGFIQCYVCKNFHSRITGQVYCKGDPL"
     gene            309..>1514
                     /gene="proS"
                     /locus_tag="VNB68_01685"
     CDS             309..>1514
                     /gene="proS"
                     /locus_tag="VNB68_01685"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004827 - proline-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006433 - prolyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HVD36095.1"
                     /translation="MSTKRATGITVKKNENFSEWYSQAILKSGLVDYAPVKGFIVLRP
                     YGYALWESIKCKLDATFKETGHQNAFLPTLIPESLLAREEHHFSGFTPEVFWVTKAGD
                     NQLSERLALRPTSETLAYSLFSKWIASYRDLPLKINFWNTAVRAEIKATKPFIRNSEF
                     LWQEGHTVHSNEKEAEEEVMLILEIYQKMIEDYLAIPTIRGLKSNKEKFVGAEYTTTL
                     EGLMTDGKALQMATSHHLGQNFSKPFEIKFLGKDSHEHFAWQTSWGVSWRLIGAIVMV
                     HGDDKGIIMPPKVAPIQVIIIPIFRDGEGIQVKSKAFEIANELKQLEIRVQVDDRDEY
                     TSGWKFNEWEVQGVPLRINIGPKDIREDRTEFVRRDTGEKVFIKRSKVSESAILFLEE
                     IQKNLISHAK"
BASE COUNT          513 a          260 c          350 g          391 t
ORIGIN      
        1 tgtagtacca ataaaacaag tagataaaca gataaaactg accgataatg ccaaaacaga
       61 attgcaaagc ataggtatga tggatgacaa aggcaaattg aaactgaaag gagtaagccc
      121 gaagatgcta aagcggatga agctggaatc agttgactgc ccagttctca aagctgaggt
      181 tggatttatt caatgctatg tttgcaaaaa ctttcatagc agaataactg gccaagtcta
      241 ttgcaaaggt gaccctttgt aaaatgaatg gccaaacttc ataaacctaa gtgagacggc
      301 tgtagagatt gagcacgaaa agagcgaccg ggatcactgt aaaaaaaaat gaaaatttta
      361 gtgaatggta tagccaggct attttaaaaa gtgggttggt tgactacgcc ccagtaaaag
      421 gcttcatagt tcttcgccct tatgggtacg ccctttggga gtccattaaa tgcaaactag
      481 atgcaacctt taaagaaaca ggacatcaaa atgccttttt accaaccttg attccggaaa
      541 gccttttggc gagggaggaa catcactttt cagggtttac tccagaagta ttctgggtta
      601 cgaaggctgg tgacaatcag ttatctgagc gactcgccct acgtcctact tcggaaactc
      661 tagcttattc tctattttcg aaatggatcg ctagctacag ggacttgccg cttaagatca
      721 acttctggaa tacagccgta agagcagaaa ttaaggccac taaaccgttc atcagaaatt
      781 cagaattctt atggcaagaa ggacataccg ttcatagtaa cgaaaaggaa gcggaggaag
      841 aggttatgct gatacttgaa atctatcaaa aaatgattga ggattacctg gcaattccca
      901 ctattagagg tttaaaaagc aacaaagaga aatttgttgg tgctgaatat accactacat
      961 tggagggatt aatgaccgac gggaaggcat tgcaaatggc tacttcgcat catttaggac
     1021 aaaatttttc aaaaccattt gaaataaaat tcttgggaaa ggatagtcac gagcacttcg
     1081 catggcagac ctcatgggga gtttcatgga gactcattgg tgcaatagtt atggttcatg
     1141 gtgacgataa aggaattatt atgccaccaa aagttgctcc tatccaagta atcattatac
     1201 ctatttttag ggatggggaa gggatacaag tcaagtcaaa agcgtttgaa atcgctaacg
     1261 agttaaaaca attagagata cgggtgcaag ttgatgacag ggatgaatat acttcgggat
     1321 ggaaatttaa tgaatgggag gttcagggag tcccccttag aatcaatatc ggtccaaagg
     1381 atattcggga agatcgaact gagtttgttc gaagagatac tggagagaag gtctttatca
     1441 aacgaagcaa ggttagtgaa tctgcgatat tgtttttgga agaaattcag aagaatttga
     1501 tttctcatgc caaa
//
LOCUS       DATLQL010000165         1277 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_396731, whole genome shotgun sequence.
ACCESSION   DATLQL010000165 DATLQL010000000
VERSION     DATLQL010000165.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1277)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1277)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1277
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_396731"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            178..438
                     /locus_tag="VNB68_01690"
     CDS             178..438
                     /locus_tag="VNB68_01690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36096.1"
                     /translation="MGASGNKDIENKDNAQEGNVGQWAELLTQLVDKITGKDVSITYR
                     FDNLEINVPKATGPNGRELGSAKWNINGKVVIHSQLENKDSS"
     gene            451..867
                     /locus_tag="VNB68_01695"
     CDS             451..867
                     /locus_tag="VNB68_01695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36097.1"
                     /translation="MPDKFLTEEDPLLNNLVNLLKVPKGNITVKTNDNPAFSLEFQGD
                     KVLLDVTDASFFNFGEEGDDIGLFSKLKTAKELAQVLTDNHLTLSILRKGKEALSLGY
                     ETHPTLSRLITRSDDIQIDSVKEVAKLKHDVDKDEK"
BASE COUNT          421 a          235 c          252 g          369 t
ORIGIN      
        1 gatattattt acctaactcc gttgctcatg aatgcctttg atttgattga aatatccttt
       61 ccttctgctg agtgaatatc ggctcgcttc ctctgtttgt ttatcgattt tcaagggggc
      121 atgctgcagg attgtctctt agacgtttat taatcattat gcccaataca agctagaatg
      181 ggagcgtctg gaaataagga cattgaaaac aaagacaatg cgcaagaagg aaatgtgggt
      241 caatgggcag aactgttaac acagcttgtt gataaaataa ctggtaaaga tgtttctatc
      301 acttacagat ttgacaattt ggaaattaat gttccgaagg caactggtcc taatggccga
      361 gagctcggaa gcgccaagtg gaacattaat ggtaaagttg taatacatag tcagttggaa
      421 aataaagaca gttcttaact aacgtataac atgcccgaca aatttttaac tgaagaagac
      481 cccttgctca acaacctagt aaatttgtta aaagtcccta agggtaatat aaccgtcaag
      541 acgaacgata atccagcatt ctcattagaa ttccaaggtg acaaagtact acttgatgtt
      601 accgatgcat cgtttttcaa ttttggcgag gagggtgatg atatcggatt attttcgaag
      661 ctaaaaactg caaaggaact agctcaagtc ttgactgaca atcatctgac actttctatt
      721 ctacgaaaag gtaaagaagc cttaagtctt ggatatgaaa cgcatcctac gctctcgcga
      781 ttaataaccc gtagtgatga tattcaaata gatagtgtga aagaagttgc caagcttaaa
      841 catgacgttg ataaagacga gaaatagaag ttctccttgc tattgcaata cgaatcaatt
      901 ctcatgaatt ttgtccgatc cggttaatta aatttaaaat ttgctgacga acctcaggct
      961 gattgtgagt ggatattatc tagccgcttt attttacaat atagaatatg tttacacaga
     1021 ctcgcaacac caaagtatgc tctctagagt catacttgca caatttattc ggaatgataa
     1081 cagcttcgaa tgttataatc aaaatataat aattcagctg tccaaataat ttacgagcct
     1141 caaacgtcga gggtagaaac aaaactttta cctcttcact ttgcggtaag acatttgaca
     1201 gccaaaaaac attggattct cacatgagta gggaccatgg tatacaacca gagtcaccag
     1261 caggagtggg taggcca
//
LOCUS       DATLQL010000166         1027 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_927273, whole genome shotgun sequence.
ACCESSION   DATLQL010000166 DATLQL010000000
VERSION     DATLQL010000166.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1027)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1027)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1027
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_927273"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(467..757)
                     /locus_tag="VNB68_01700"
     CDS             complement(467..757)
                     /locus_tag="VNB68_01700"
                     /inference="COORDINATES: protein motif:HMM:NF019982.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HVD36098.1"
                     /translation="MSPEIANKQNNLGIWENTNWSGACDEEAKLAKPTLVIAGTDDNN
                     YMPHGNALILAGKIPGAWLVQIKNAGHAVMDQYPAEIGKILNTFLSTTSPNN"
     gene            complement(767..>1027)
                     /locus_tag="VNB68_01705"
     CDS             complement(767..>1027)
                     /locus_tag="VNB68_01705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36099.1"
                     /translation="AQAFTVSYPDKVNRLILVATTCGGKDAIPKPPEFKKLQADVVSK
                     SLHNIPITQEMKALNVASLGQGWVRLHPESVDIPANTTSLQQ"
BASE COUNT          293 a          190 c          212 g          332 t
ORIGIN      
        1 agattacagt tcgtgttggt gctttctatt tattgatgag acaagattag aggcgaaggt
       61 tgtacataaa ggaagaggta agttcaaaat tctaaatgat gaatatggcg gaaaatacgt
      121 taataaaata gttgatgcat cagatattgt tcattgtaaa gttgttgatg attgacatgt
      181 acctttcaat gacaaaaaaa taggttcgag agatttggag tctctttaat ttaagagcca
      241 gctgcatcat tacaagttgc tcaagttcaa cttcaattac gtacagccaa cctataattc
      301 gtaagcactg gaggtttgaa tgttaagaca ccaagtgggc cccaaggggg tttgattccc
      361 gtaggtaaag gggctcataa tcaatattag agttattcta ccaaaaaaat ctttcagtcc
      421 atagtatcat gtcgtagcta gcacccgaaa tcagttcatg cttcattcaa ttgtttgggc
      481 tagtggtcga tagaaatgtg tttaatatct taccaatctc agccggatat tgatccatga
      541 ctgcgtgacc agcattttta atttgtacaa gccaggctcc tggaattttg cctgcaagaa
      601 ttaaagcatt tccatgcggc atgtagttat tatcatctgt tccagctatg accaacgtgg
      661 gttttgccaa tttcgcttcc tcatcacaag caccactcca gttggtattc tcccaaatac
      721 ctaggttatt ctgtttattc gctatttcag gggacaaacc aggcttctat tgttgtaatg
      781 atgtagtgtt tgctggaatg tctactgatt caggatgcag tcttacccat ccctgtccta
      841 atgaagcaac attaagcgct ttcatttcct gagtaatggg aatattatgt agagatttgc
      901 ttacgacatc ggcttgcaat ttcttaaatt caggtggttt aggtatagca tcttttccgc
      961 cacatgttgt ggcaacaagt atgagcctgt taaccttatc tggatagcta actgtaaatg
     1021 cctgagc
//
LOCUS       DATLQL010000167         1125 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2171214, whole genome shotgun sequence.
ACCESSION   DATLQL010000167 DATLQL010000000
VERSION     DATLQL010000167.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1125)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1125)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1125
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2171214"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..224)
                     /locus_tag="VNB68_01710"
     CDS             complement(<1..224)
                     /locus_tag="VNB68_01710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36100.1"
                     /translation="MAENNIGGPTVLWGQLKGKKVKSNDGKDLGDIDKISQNYIKLEK
                     GTIKKEKFWVPKYLADAFDGKVLWLLTGEE"
     gene            306..>1125
                     /locus_tag="VNB68_01715"
     CDS             306..>1125
                     /locus_tag="VNB68_01715"
                     /inference="COORDINATES: protein motif:HMM:NF021458.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2171 domain-containing protein"
                     /protein_id="HVD36101.1"
                     /translation="MVDVLSWDKSIDEDVKTSDDKKVGKVRAVTTDFIQIQKGTLDKK
                     YYFVPKHYIQGYDGNHIWLALTEDEVKQFESEKELPLSSFDNAQYRERKSVVEKQYPQ
                     FSSAIPTYSSKGPAQNQVGMSWDKVIGKEVKSADDKDMGEVESIAADYVEVKEGTVDK
                     KHYYIPKSFVEEFDGKKLHVSLTKDEIKDRHERDSPPLPAEFESNEYKDISRQREAKY
                     PQYRELIPLMAKEPGLEMKGQESGEILKIPWEEVIHKHVRTSDNVDIGDVDKVGN"
BASE COUNT          378 a          200 c          246 g          301 t
ORIGIN      
        1 tcttcctcgc cggtaaggag ccatagcact tttccatcaa aggcgtcggc caagtactta
       61 gggacccaga acttttcctt tttaattgtt cctttctcga gtttaatgta attttgagat
      121 attttatcga tatctcctaa atcctttccg tcattcgatt tgactttctt tcctttgagc
      181 tgtccccata gaactgtagg gcctcctatg ttattctcag ccataggtac aagatataaa
      241 acatatcata taaagactga tgcgggttta caaccaataa atgtgatgct gcatattagt
      301 atcagatggt agatgtactt tcatgggaca agtctattga tgaagatgta aaaacaagtg
      361 acgataagaa agtaggtaag gtaagagcag ttaccaccga ttttatccaa attcaaaaag
      421 gtactctgga caaaaaatac tatttcgtgc caaaacatta cattcaggga tacgatggaa
      481 atcacatctg gttggcattg actgaagacg aggtaaagca atttgaatct gaaaaagagt
      541 tgcccttatc tagttttgat aacgcacaat accgtgaaag aaagtctgtt gtagaaaagc
      601 agtatccaca gttctcgagt gcgattccga catattcgtc caagggccca gcgcagaacc
      661 aagtcggtat gtcatgggac aaagtaattg gcaaagaagt aaaatcagcc gatgataaag
      721 atatgggaga agtagagagt atagctgctg attacgtcga agttaaggaa ggtacagtag
      781 acaagaagca ttattacatt ccaaaatcct ttgtcgaaga attcgatgga aagaagcttc
      841 atgtttcgtt aacaaaagat gaaatcaagg acaggcatga gcgggatagc ccgcctctac
      901 cagcagaatt tgaatcaaat gagtacaaag atatttcaag acaacgtgaa gccaagtatc
      961 cccagtaccg cgaattgata ccactaatgg ctaaagaacc agggctggag atgaagggac
     1021 aggaatctgg tgaaattttg aaaataccct gggaagaggt tattcataaa catgttcgaa
     1081 ctagtgacaa tgtagacata ggtgatgttg ataaagttgg taatg
//
LOCUS       DATLQL010000168         1306 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_218624, whole genome shotgun sequence.
ACCESSION   DATLQL010000168 DATLQL010000000
VERSION     DATLQL010000168.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1306)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1306)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1306
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_218624"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            515..694
                     /locus_tag="VNB68_01720"
     CDS             515..694
                     /locus_tag="VNB68_01720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36102.1"
                     /translation="MVEEGETIHKEYEWECNECGYTSIITIEPDSAKALKDTHQKETG
                     HSKGFLFIVTKIMTD"
     gene            907..>1306
                     /locus_tag="VNB68_01725"
     CDS             907..>1306
                     /locus_tag="VNB68_01725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36103.1"
                     /translation="MMIVLVSTIIGIGVTPILLQQQSANGLVHTGDLQKGVVNHEEQR
                     TKAPIATSGDNVYIAWWTNKTGNNEVMFRASSDGGKTFGDKINLSNSTKSESQDAHID
                     ASGDRVFVTWWDRNATSEEPLLRTSTDKGAT"
BASE COUNT          453 a          261 c          247 g          345 t
ORIGIN      
        1 tttgtggtat ctgtagttcc atcagcctct gcagcacagc ctggttgtag tggaaatcca
       61 catgacactg accaaaacta attagaacaa ataatatact cacccaccca caactttttt
      121 tttcgttcgt tcgtctaaaa gaaataggat aattgatgtt caaacatata agaagcaaca
      181 accagtttaa taatacatgg ttctagtagc accatggtag tgttaccatt tagaatattg
      241 atagtaatat catgcatata caatatgata acccacatac ttacctagag acaacacaca
      301 ctaacagtaa cacaggacaa acaccagtac tggtatgccc ctaccactgc accaatcaag
      361 tacctttata ccagaatcac acatagcgtc aagcctcaag ccttatagcc cctaccctta
      421 gcactacccc cctaccaata taccactaaa tcgggtgagc cgattttgat tgtaatcata
      481 agtaatataa ttacgataag agattcctta ctacgtggta gaggagggtg aaacgattca
      541 taaagaatat gaatgggagt gtaatgaatg cggctacaca agtattataa caattgaacc
      601 tgatagtgct aaagcattga aggatacaca ccaaaaagag acaggacata gtaaaggatt
      661 ccttttcatt gttaccaaga ttatgactga ctagaatgca gggtggtcat gtcttcaatg
      721 tcaatacgtt cgttcctagt tcaataaaat atattgaatc gtaggcaggc acaatccacc
      781 ctatgtcctg ccggtttact gatcgccaga aaactgtata gtatcgtctg acgattattg
      841 cttatatact tatgattatt cctatagaac ctgatgaata gtaagaattt tagactagga
      901 gctattatga tgatagttct tgtatcaaca ataattggaa ttggcgtaac tccaatacta
      961 ctgcaacaac aatcagcaaa tgggctggtg cacacagggg atttacaaaa aggtgtagtt
     1021 aatcatgaag aacaaagaac gaaagcccca atagctacat ctggagataa tgtctacata
     1081 gcatggtgga ctaacaagac aggaaataat gaagtaatgt ttagagcgtc ttcagatggt
     1141 gggaaaacct ttggagataa aataaacctt agtaattcca ctaaatctga gtcacaggac
     1201 gcgcacatag acgcatcagg tgacagagta tttgtcacgt ggtgggaccg taacgctact
     1261 agtgaggaac ctcttcttag aactagcact gacaaaggag ctacgt
//
LOCUS       DATLQL010000169         1050 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_397488, whole genome shotgun sequence.
ACCESSION   DATLQL010000169 DATLQL010000000
VERSION     DATLQL010000169.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1050)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1050)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1050
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_397488"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(235..984)
                     /locus_tag="VNB68_01730"
     CDS             complement(235..984)
                     /locus_tag="VNB68_01730"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family cysteine hydrolase"
                     /protein_id="HVD36104.1"
                     /translation="MFQVAFPSGRKIVPALIVVDMQNGFVSKGGSYDKLGMNTSNYRE
                     IIPKLKDLIEFCRSKEIPIFYTEAVKEASGIDVLTKIHNFLPKSRQERLKFPICIRGT
                     WDGVTIDELKPKENDPVVIKRRDSAFQDTELRVWLQSEGINLLVFTGIDTSICVETSL
                     RDGFNIGYDVAVISDATASGHEDHYETTLERVRDYYGLVMNIERFKKAINNLDKVRKG
                     EVDLPHISDETLNAFLEEFDLLDPRTFALTH"
BASE COUNT          288 a          238 c          179 g          345 t
ORIGIN      
        1 cacatgtaaa atattgtata tcgtatatta tctttagacc accaagtaca ctgctagttg
       61 tgttacttac aaaatttacc gtttcattga cctacgtttc cacaatatta ccgctctgat
      121 agggttcttt ctgtagttgg atctaaaatc caacgctctg accgatgatt ttccctcgca
      181 tcgacgcttt ggaatgcccg tgcatatcga gtgtaaaaag gactcgacgc tcagctagtg
      241 agtgagagca aacgtcctag ggtccagtaa gtcaaattcc tcaagaaagg cattcaaagt
      301 ttcgtctgat atatgaggta aatctacctc gccttttcta actttgtcca gattattaat
      361 cgctttttta aaccgttcta tattcattac caatccatag tagtctctaa ctcgttctaa
      421 tgtggtctca taatggtctt catgtcctga tgccgtggca tcagagatca ccgccacatc
      481 atatccaata ttaaacccgt ctcttaatga tgtctctaca caaattgaag tatcgattcc
      541 agtaaaaact agcaagttaa tgccttcgct ctgaagccag acccgtagtt ctgtatcctg
      601 aaaagcagaa tctctccgtt tgataactac cggatcattc tctttaggct ttagctcgtc
      661 aatcgtaacc ccatcccatg tgcctctgat acagatcgga aacttcagtc gctcttgtct
      721 tgattttggt agaaagttat ggatttttgt cagcacgtca attccgctgg cctctttaac
      781 tgcttcggtg taaaagatag gaatttcttt actcctgcag aattcgatga gatccttcag
      841 ctttggtatt atctccctgt aatttgaggt gttcatccct aatttatcat atgaaccacc
      901 tttgctaaca aaaccattct gcatatctac aacgattaaa gcaggtacaa ttttacgtcc
      961 tgatgggaaa gcgacttgga acatattctg tggtttttat aatattgaaa gtatataagg
     1021 atacccttct accctctgca ttaacatata
//
LOCUS       DATLQL010000170         1014 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2352011, whole genome shotgun sequence.
ACCESSION   DATLQL010000170 DATLQL010000000
VERSION     DATLQL010000170.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1014)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1014)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1014
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2352011"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(39..452)
                     /gene="lysM"
                     /locus_tag="VNB68_01735"
     CDS             complement(39..452)
                     /gene="lysM"
                     /locus_tag="VNB68_01735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0019878 - lysine biosynthetic process via
                     aminoadipic acid [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator LysM"
                     /protein_id="HVD36105.1"
                     /translation="MDSVDQKIIHILQADARKSYVEIANEIGFSESAIRRRVKNLLDT
                     GVIKRFTIETDSGDKTNAITLISVSSTSDTPTVSTDLMKIKGVQVIYEITGQYDIAAI
                     ISAPTIEEINKCIDEVRKANGVSDTNTVIVLKMTR"
     gene            complement(454..>1014)
                     /locus_tag="VNB68_01740"
     CDS             complement(454..>1014)
                     /locus_tag="VNB68_01740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HVD36106.1"
                     /translation="LVLIFDEIQSGLGRTGKMWAGQNWNTTPDIMCLAKGIAGGIPMG
                     LTLSKPEIIEAMRVGEHSSTFAGNPIACAAGIATLDSLTEDKLVSNAATAGKFFKEGL
                     LKLKARHKIIREVRGLGMMLAVELRFEIRDLLLEGIRNGLLMLYSGRNIIRLLPPLVM
                     DEKTISDVLERMDMLITKEEERRNIQ"
BASE COUNT          259 a          228 c          177 g          350 t
ORIGIN      
        1 ttgattaatc atggtcttgc tacttgggtt ctatagtcct atcgtgtcat cttaagaacg
       61 atgactgtat ttgtatcgga aacaccgttt gccttacgaa cttcatcaat gcatttatta
      121 atttcttcaa tggtaggagc ggagataatt gcggcaatat catattgtcc tgtgatttca
      181 tagattactt gtacgccctt tattttcatg agatctgtag aaaccgtggg tgtgtctgac
      241 gtggaactaa cagagattaa tgtaatcgca ttcgtcttat caccgctatc cgtctctatg
      301 gtaaacctct ttattactcc ggtatcgagt agatttttta cacgtcttct tatggcagat
      361 tcagaaaatc ctatttcatt tgcaatttct acgtacgatt tacgtgcatc agcttgcaga
      421 atatgtataa tcttttggtc tacagagtcc aatttactgt atatttcttc tctcctcctc
      481 cttggtgata agcatgtcca ttctctctaa gacatctgaa atcgttttct cgtccatgac
      541 aagcggcgga aggagtctaa ttatgtttct acctgaatac aacatgagca atccgtttct
      601 gattccttca agtagtaggt cccttatttc gaaacggagt tcaactgcaa gcatcatgcc
      661 caagccccta acttctctaa ttatcttgtg tctcgctttt aactttaaaa gaccctcctt
      721 gaaaaatttg cctgctgtag ctgcatttga aactagctta tcttcagtta atgagtctag
      781 agtagcaata cccgcagcac atgcaatcgg attaccagca aaagtagaag agtgttctcc
      841 tactctcatt gcttctataa tttcgggttt tgacaatgtg agacccattg gaattcctcc
      901 tgcgattcct tttgccagac acattatgtc aggcgtagta ttccagtttt gcccagccca
      961 cattttccct gttcttccta accctgactg aatttcatca aatatcagaa ccag
//
LOCUS       DATLQL010000171         1099 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1996408, whole genome shotgun sequence.
ACCESSION   DATLQL010000171 DATLQL010000000
VERSION     DATLQL010000171.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1099)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1099)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1099
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1996408"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            24..>1099
                     /locus_tag="VNB68_01745"
     CDS             24..>1099
                     /locus_tag="VNB68_01745"
                     /inference="COORDINATES: protein motif:HMM:NF013570.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004813 - alanine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006419 - alanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase-related protein"
                     /protein_id="HVD36107.1"
                     /translation="MCLRFNDIENVGLTGRHYTSFCMIGQTCNADAAGGYWKDKCIEL
                     DHSLLKDVFGIKSDEITFVEDVWMGAGAFGYSLEYYVRGLELGNAVFTEFEGDQYNYR
                     TLDNKIIDMGAGLERLSWITLGTPTSYDATFGPVIRKLADKFGIDVDSKSELLSQYFR
                     RFSEMHTHYQDDVTLLKTNIAKELGLTFESLEKTILPFETLSIIADHSRTLMFAISDG
                     CLPSNVGGGYNLRIVLRRTLALLARFGWNIDLAEVMDMHIEQLESMYPELKEHKNDVR
                     TIIQIESDRYSSSKERMYQIANSMIKSKNSPSTEDLIRMYESDGITPDFLLESGVIEK
                     IPPDFYVKLSELHTSHESKQVLDI"
BASE COUNT          352 a          187 c          226 g          334 t
ORIGIN      
        1 aaaatcctct agtggttcca caaatgtgtc ttcgctttaa cgatattgaa aatgtaggtc
       61 ttacgggtag gcattatact agcttctgta tgattggtca aacttgtaat gctgatgccg
      121 caggaggata ttggaaagat aaatgcatag aacttgatca ttctcttcta aaggatgttt
      181 ttggcatcaa gtcagatgaa attacatttg tcgaggatgt gtggatgggt gccggagcat
      241 ttggttattc cttagaatac tatgttcggg gcttggaact tggaaacgca gtctttactg
      301 aatttgaggg ggatcaatac aactatcgca ctcttgataa caaaattata gacatgggag
      361 caggactgga acgtctgtca tggatcactt taggaactcc tacaagttac gatgctactt
      421 ttggcccagt cataagaaaa cttgccgaca aattcggtat tgatgttgat tctaaatcag
      481 agctcttgtc tcaatacttt aggagatttt ctgagatgca tactcactat caagacgatg
      541 taaccctact aaaaacaaat attgccaaag aacttggttt gacttttgaa agcctagaaa
      601 agactatctt accttttgaa acattgtcga ttattgctga tcacagcaga actctaatgt
      661 tcgcaatttc tgatggttgc ttaccttcga atgtaggcgg tggctataat ttaagaatag
      721 ttttaagaag gacccttgca ttgcttgcga gatttggctg gaatatcgat ttggcagaag
      781 taatggatat gcacattgaa cagctagaat caatgtaccc cgagttaaag gagcacaaga
      841 atgatgtaag aaccataata caaatcgaat ccgatagata ttcttcgtcc aaagaaagaa
      901 tgtatcaaat agctaattcc atgataaaat ccaagaacag tcctagtaca gaggatctta
      961 tcagaatgta tgaatctgac ggtattacac ctgatttctt acttgaatct ggagtcatag
     1021 aaaagatacc tccagacttt tatgtgaaat tatcagaatt acatacttca catgaatcaa
     1081 agcaagtttt ggatattga
//
LOCUS       DATLQL010000172         4748 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2528937, whole genome shotgun sequence.
ACCESSION   DATLQL010000172 DATLQL010000000
VERSION     DATLQL010000172.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4748)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4748)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4748
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2528937"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            548..2020
                     /gene="sufB"
                     /locus_tag="VNB68_01750"
     CDS             548..2020
                     /gene="sufB"
                     /locus_tag="VNB68_01750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HVD36108.1"
                     /translation="MTTEEINIHNNNNTAQAQKAEGTKQGPQDLNMDYSKYDFKDSTE
                     LYVYLSKKGLSRGTVEEISRLKAEPDWMRDFRLRSYDVFMSKPMPNWGGDLSHIDFQN
                     IYYYAKASEKQSKNWDDVPEAVRNTFEKLGIPEAERKFLAGVGAQYESEVVYHNLRED
                     LEKQGVIFVDTDTAVKKYPDLMKKHFGKVIPPEDNKFAALNSAVWSGGSFIYVPRNVK
                     IDLPLQAYFRINAENIGQFERTLIIADEGAEVHYIEGCTAPVYATESLHSAVVELIAK
                     KGAKIRYTTIQNWSKDVYNLVTKRAYAYEKATVEWIDGNLGSKLTMKYPGVYMLGRGA
                     HAEVISIAFAGKGQHQDAGAKAVHLAPDTTSRITSKSVSKDSGRTTYRGLLHVAKGAT
                     GVKSTVRCDALLLDKDSRTDTYPYVEVNEDDATISHEATVGKIGQDQIFYLMSRGFTE
                     SDALSLIVGGFMEPFTKELPMEYAVELNRMVKMEMEGSVG"
     gene            2254..3702
                     /locus_tag="VNB68_01755"
     CDS             2254..3702
                     /locus_tag="VNB68_01755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SufD family Fe-S cluster assembly protein"
                     /protein_id="HVD36109.1"
                     /translation="MSATSTSLSQVDSNYVKNISRENSEPAWMSEMRETAFSKYNSLP
                     FEVSPLYSKYSDAKRLHPEQVHIPQTHKQFEPNQDTIERIGELEKEEEKETSVLRIGS
                     YIVRLHITEQMSEQGIVVMDLRDALNKHGDLIRKHLVKNTLKYDEDKFLALEASCFDS
                     GIFIYIPKNVTFNDSIRLVNTLPDDGSSSISRNIVVAEPGSKASIVQEIYSPPQPAAN
                     NSAQQCYFELLECHVEPNAQLEMVTLQAMDEKSSINFSNRKAFIERDGKMSWYMGLFG
                     TQLSRYKIDSITKGAGSSAEDVEIIFGVGEQSFDISSNLLHYGESSRGRVLAKSVMKD
                     NSKSLFKGMIKIEKGAKSTESYLAGHAILLDKGAKSDAIPGLEIETNEVRATHSASVA
                     QIDENQIFYLMCRGLSREGAKREIVSGFLEPLSRKMGPRIRAWVNYLIENKWNGKPLM
                     LKTDEAMEQILEVEKSRYREVEDIFEKHYKYR"
     gene            3729..4046
                     /locus_tag="VNB68_01760"
     CDS             3729..4046
                     /locus_tag="VNB68_01760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske (2Fe-2S) protein"
                     /protein_id="HVD36110.1"
                     /translation="MSNWVKVCEEKSLKNGELLDFDFEDKQILIAKANNKVYALDRIC
                     THAYADLATGFLDDKEKIVTCPLHMSRFRLEDGAPENLPAEAPLKKYNVESRDGFIHV
                     MID"
     gene            4268..4666
                     /locus_tag="VNB68_01765"
     CDS             4268..4666
                     /locus_tag="VNB68_01765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36111.1"
                     /translation="MEKRDSSKDAIQKNKEKCGKILSLSKRIRYVGMINDFGRTIAGK
                     LRVGMVPLLNTEQAINDHFIEATRNNLRKAFYSVIGNAIYTLTEHEKVIMLTVPTDWG
                     FYYITLDKETDHVEIKEIIDKVLNLIPTLQ"
BASE COUNT         1631 a          884 c          968 g         1265 t
ORIGIN      
        1 taactttaca acatgttgat tagagtgcaa ataataaaag gtcgatgcaa ggtaaaccag
       61 atgtgtcctg ttgaggatat gaggaagtta gtattattgt agaaatattc tttagatgat
      121 tcaaaagatt tagacgcatc catatgcggt taaaaaaact agtatccttc tagtcaggtt
      181 aattcaaata gtctgcatat caagactatt ggaagttttc agaccagtcc gtaatcattc
      241 cctagatgag tcggtcgact tgttgaagtt taaacgattc taaagtccat aaaatccatt
      301 acaaatgaat tctacgtaaa agactggatt ctgatattat ttcaatagta cacggatgaa
      361 ccatacatcg agctgccccg ttgtctatat acctcaccgt caaatgggta tttaaattac
      421 tgtgtccaaa ttcgaacaaa tcaaccagat tgagatatct gttccttaaa gctcggtctg
      481 catgaatata ttaatgaaag tttattggaa gaaatatata taataacgtc gttataatca
      541 cgtactaatg acaaccgaag agattaacat tcataataat aataatactg ctcaggctca
      601 aaaggctgaa ggaaccaaac aaggtcctca agaccttaac atggattatt ccaaatatga
      661 ctttaaggat tcaactgagc tttacgttta tctgagcaag aagggtctgt ctcgcggcac
      721 ggtcgaggag ataagccgtc tcaaggcaga acctgattgg atgcgcgatt ttcgattgcg
      781 gtcatacgac gtttttatga gcaaacctat gcctaactgg ggaggcgacc tctctcacat
      841 tgactttcaa aatatatact actatgcaaa ggcatcagaa aaacagagca agaattggga
      901 tgacgtacca gaggctgtga ggaacacatt tgaaaaattg ggaattcctg aggcagaacg
      961 caaattcttg gccggtgttg gtgcccagta tgaatctgaa gttgtctacc ataatctaag
     1021 agaagatctg gagaagcaag gtgtcatctt tgtagataca gatacagctg tcaaaaagta
     1081 tcctgacttg atgaagaaac attttggaaa agttatcccg cctgaagaca acaaatttgc
     1141 cgcccttaac agtgctgtgt ggtctggcgg ctcattcatt tacgtacctc gaaacgtcaa
     1201 gattgatctc ccacttcaag cctactttag aatcaatgcc gaaaatatcg gtcaatttga
     1261 acgtactcta atcatagccg atgaaggcgc agaagttcac tacattgagg gctgtactgc
     1321 tccagtctat gctacagaat cgttacattc cgcagtagtg gaactgatag ccaaaaaagg
     1381 agccaagatc cgttacacta ccatacagaa ttggagtaaa gacgtctaca accttgtaac
     1441 caagagagcc tatgcatacg agaaggccac cgtagagtgg attgatggca atctaggcag
     1501 caagttgacg atgaaatatc ctggcgtcta catgcttgga cgaggagcac atgctgaagt
     1561 tatctctatc gcttttgcag gtaaaggtca acaccaagat gcaggtgcca aggcggtaca
     1621 tctcgcacct gataccacat cgcgtattac cagcaagtca gtcagcaaag actctggacg
     1681 tacaacctat cgaggcctcc tacatgtagc caaaggtgct actggtgtca aatccacagt
     1741 acgctgtgac gcacttttac ttgataagga ctctagaact gacacctatc catatgtcga
     1801 agtaaatgaa gacgatgcca ccatctctca tgaagcaact gtaggtaaga taggccaaga
     1861 ccagatcttt tacctaatga gtcgtggctt cacagaatca gatgcactct cacttatagt
     1921 tggtggattc atggaaccat tcacaaaaga gctgccgatg gaatatgcag tagaactcaa
     1981 ccgaatggta aaaatggaaa tggaaggctc agtaggctaa tcgtaatcgt acaacaaaca
     2041 gaaatagtat tagtattagt attagtatta gtattagtaa taacagcaat aaaagcagca
     2101 gagcaccaat aacagtaata accatagcac aacaacagat ctctaatcca accagttaga
     2161 atttttataa atctcaattg agaaatctta accagtacag tcatggaata gaaaggtaga
     2221 taatacatcc tgctattcta tctcaaatag aatatgtctg ctacttctac ctcactgtca
     2281 caagtagaca gtaattatgt caagaatatc agtcgagaaa attcagaacc tgcatggatg
     2341 tctgaaatga gagagactgc tttttctaaa tacaatagct tgccattcga agtctcacca
     2401 ctgtattcca aatattctga cgctaaaaga ctccatccag aacaagttca tattccgcaa
     2461 acacacaagc aatttgaacc aaaccaagac acaatagaga gaatcggaga attagaaaaa
     2521 gaagaggaaa aagagaccag cgtattaaga atcggttcat acatagttcg tttacatatt
     2581 acggaacaga tgtcagaaca gggcatagta gtaatggact tacgtgatgc attgaataaa
     2641 catggtgatc ttatcagaaa acatctcgtc aagaatacct taaagtatga tgaagataaa
     2701 tttttagccc tcgaagcatc ttgctttgac tcaggcattt tcatttacat tccaaaaaat
     2761 gtcacattca acgactcgat tagattagtg aatactcttc ccgatgatgg gagctcctca
     2821 attagtagaa atattgttgt cgcagaacct ggttcaaaag caagcatcgt gcaagagatt
     2881 tactcccctc cacaaccagc agccaacaac agtgcacagc aatgttattt tgaactttta
     2941 gaatgtcatg tggaaccaaa tgcccaactt gagatggtaa ctctccaagc aatggatgaa
     3001 aagagttcta tcaatttttc aaatagaaaa gcattcatcg agagggacgg aaagatgtcc
     3061 tggtacatgg gtttatttgg tacccaactt tcacgataca aaattgatag cataacgaaa
     3121 ggcgctggtt cttcggcaga agatgttgaa ataatatttg gcgtaggaga acaatcattt
     3181 gatatctcct cgaatttgct ccattatggc gagtcctcta ggggtagagt tctcgcaaaa
     3241 tcagtaatga aagataattc aaaatctctc tttaagggca tgataaagat tgaaaaaggg
     3301 gcaaagtcca ccgaatctta cctagcaggc cacgctattc tcttggacaa aggtgcaaaa
     3361 tcagatgcaa tcccaggcct tgagattgaa actaacgaag tcagagcgac acattctgcc
     3421 tcagttgcac agatagacga aaaccagatt ttctatctca tgtgcagggg gcttagcaga
     3481 gaaggggcga agagggaaat cgtaagtgga tttcttgagc cactatcaag aaaaatgggt
     3541 cctaggatac gagcatgggt aaactatttg attgaaaata aatggaacgg aaagccactt
     3601 atgcttaaaa cagatgaagc aatggaacag attcttgaag ttgaaaaaag tagatacagg
     3661 gaagttgagg atatctttga gaaacactac aaataccgat aaggaataac cgggaggtcg
     3721 gatcgatttt gtcgaattgg gttaaagtat gcgaagaaaa atctctgaag aacggtgaat
     3781 tattggactt tgattttgag gacaaacaaa tcttgatagc taaagcaaat aataaggtgt
     3841 atgcactgga cagaatttgc acacatgcgt atgctgattt agcgactgga tttttggacg
     3901 ataaagagaa aattgttact tgtccgctac atatgtctag attccgacta gaggacggag
     3961 ctcctgaaaa tctgcctgct gaagcacctt taaagaaata taatgtagag tcaagagatg
     4021 gtttcattca cgttatgata gattagccag ttcaatagta tggtccgtta aatggtaaag
     4081 taaaagagaa tatgccctca aatctattat tccatatttt tattgatgac agaacacaag
     4141 ttatcattct gattttagga gttaaattta caacgtgaca cctttcctaa ctagtcttaa
     4201 tcgcgagtaa gatctcatct tatgttatga ggacttatat ttgcggagat atcggtaaaa
     4261 ttagaatatg gagaaaagag attcatcaaa agatgccatt caaaaaaata aggagaagtg
     4321 tggaaagata ctttccctat caaagagaat acgttatgtc ggaatgataa atgattttgg
     4381 cagaactatt gctggcaaat tgagagtggg gatggtgcca cttcttaata cagaacaagc
     4441 aataaacgat cactttatag aggcaaccag gaataatctt agaaaagcat tctattcagt
     4501 gattggtaat gctatctata ctctaaccga gcacgaaaaa gtaataatgc ttactgttcc
     4561 tactgactgg ggtttctact acataacact cgacaaagag acagaccacg tagaaattaa
     4621 agaaattata gataaagtgc tcaatttaat acctacttta caataattcc atggttccat
     4681 aaccgatccc gcacttggag tttaacgaag atttgattgg cttaaattta attgcctatt
     4741 gctacttt
//
LOCUS       DATLQL010000173         2405 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1996447, whole genome shotgun sequence.
ACCESSION   DATLQL010000173 DATLQL010000000
VERSION     DATLQL010000173.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2405)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2405)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2405
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1996447"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..212
                     /locus_tag="VNB68_01770"
     CDS             <1..212
                     /locus_tag="VNB68_01770"
                     /inference="COORDINATES: protein motif:HMM:NF016060.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="GtrA family protein"
                     /protein_id="HVD36112.1"
                     /translation="EFSPGSTAKQFLSFFVISVIGAVIQLFILYMLVENDMPYRLSLV
                     LAVSIASLSNFVLYKKLTFREKVWA"
     gene            complement(284..826)
                     /locus_tag="VNB68_01775"
     CDS             complement(284..826)
                     /locus_tag="VNB68_01775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36113.1"
                     /translation="MTTYPRRINIVKGLQDFIRNEEILLDHLSIAVKMRRKEELIRAL
                     FEEGFRKVQFENRKPFQIGKGFSKKLKSPWELHLRLLNLQKGMIAIQAEVEISRKYIQ
                     HIRSVRSPVIYEIESILKTHRIEYRIWNAKVRDYIANIIDNHQIALKAPRLAATPWKP
                     MLAIAIGLAVVYAFKFIRLF"
     gene            complement(1090..1860)
                     /gene="cofE"
                     /locus_tag="VNB68_01780"
     CDS             complement(1090..1860)
                     /gene="cofE"
                     /locus_tag="VNB68_01780"
                     /EC_number="6.3.2.31"
                     /inference="COORDINATES: protein motif:HMM:TIGR01916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043773 - coenzyme F420-0 gamma-glutamyl
                     ligase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="coenzyme F420-0:L-glutamate ligase"
                     /protein_id="HVD36114.1"
                     /translation="MEVHAISVRRKTRKFDLFKTIVNSGFNFVDGDVVVVSSKFVSIS
                     EGSLVQLKRVRPTSMAKKLARRFQMNEELTELVLREADMIINGIPGFLLCIKDGMLAP
                     NAGIDKSNAPKGKVILYPRNAFASADSLRLEFMSSLGLMIGVIISDSRLMPTRIGTTG
                     IAVGVSGIEPVEDQRGHLDLFGKKLKVTLRAIADSLATTGVFIMGESNESTPVVVIRG
                     AEVRFTNRKLSHVEMTIDPSNDIYLRNFSLKLKNTSVE"
     gene            1957..>2405
                     /locus_tag="VNB68_01785"
     CDS             1957..>2405
                     /locus_tag="VNB68_01785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitase family protein"
                     /protein_id="HVD36115.1"
                     /translation="MTITEKIIARASSMPSVAPDDVVFVKVDKLMVHDVSGPGVIKVF
                     EEWAKKGVHLERVWNPDKVWVSEDHFVPAADKISANNIMKLTNWTKKFGIKRHYKYGL
                     GQYGICHTLSHEEGLVLPGEVYVGGDSHTNTTGGLGAFAVGLGHTDIA"
BASE COUNT          680 a          485 c          450 g          790 t
ORIGIN      
        1 gagaattttc accaggatct actgcaaaac aatttttgtc cttttttgtg ataagtgtaa
       61 taggtgccgt aattcaactg ttcatattat acatgcttgt cgaaaatgac atgccatacc
      121 ggttatcgct tgttcttgct gtatcaatcg catcattgtc aaacttcgtc ctctacaaga
      181 agctgacttt tagagaaaag gtctgggctt agccactgac ggtgttttat gaaatcccat
      241 gtagaggtat gatattttaa tagactaata ttttccttct atcttagaat agccgaatga
      301 atttgaatgc gtacacaacg gctaatccaa ttgcaattgc cagcattggt ttccatggag
      361 tagctgcaag acgtggagcc tttaatgcta tttggtgatt gtctataatg ttcgctatat
      421 aatctcggac cttggcattc catattctat actcaattct atgtgttttc aaaattgatt
      481 ctatttcgta gatcactggc gaccggactg agcgaatatg ctgaatatac ttcctagaga
      541 tctcaacctc tgcttgaatt gctatcatac ctttctggag gttcaacagt cgcaaatgga
      601 gctcccatgg gctctttagt tttttagaaa accctttccc tatctggaaa ggtttcctat
      661 tttcaaattg taccttcctg aatccttctt cgaagagtgc tcggattagc tcttcttttc
      721 tcctcatttt taccgctata ctgagatgat ccagcaggat ttcttcgttc cttataaaat
      781 cttgaagacc ctttacaata tttatccttc tgggatatgt agtcaagaat tctgacatgt
      841 attgcgactg aaatttttac tcgtaaggca tattaaaact cttgcgttct acgctattgg
      901 agcctgagac atctccaatt tttactacct cggcactttt agtcttttta ttctttaaaa
      961 tggtttaatg gtgcttcgca aatagtgata acacctattt taattaagcc taaaaataaa
     1021 ttgcacaata taaccgatct cagttgtcga ggtactcgac aaaggagaat tgtgtgccca
     1081 ctaaacattt cactccactg aagtattttt caatttaagg gaaaaatttc taaggtaaat
     1141 gtcgtttgat ggatcaatcg tcatttctac atgactaagt ttcctattcg taaatctgac
     1201 ttctgcacct cgaattacta cgacaggagt tgattcgttg ctttcgccca tgataaaaac
     1261 accagtggtc gcaaggctat cagcaatagc cctaagggta acttttagtt tttttccgaa
     1321 tagatcaaga tggcctcttt gatcctctac aggctcgatt cctgacacac ctacggcaat
     1381 tccggtagtt cctattctcg ttggcataag tctactgtct gagatgataa ctccaatcat
     1441 tagtcctagg gaactcatga attctagtcg gagtgaatct gctgatgcaa atgcattacg
     1501 cgggtataaa ataactttgc ctttcggcgc atttgacttg tcaattcctg cattgggtgc
     1561 aagcataccg tctttgatac aaagtaagaa gccaggaatc ccgtttataa tcatgtcagc
     1621 ttcacgtagt accaactccg ttaattcttc gttcatttga aaccttctcg ccaacttttt
     1681 tgccatcgaa gtcggtctta ctcttttcag ttgcaccaat gatccttctg aaattgagac
     1741 aaacttgctt gaaaccacaa ctacatctcc atcaacaaag ttaaatccgg aattcactat
     1801 cgttttgaaa agatcgaatt ttctagtttt tctacgaacg ctgattgcat gaacttccac
     1861 gaaattaatt acatcagatt ataatatctg tattttgtga aaggttttaa tgtttcagac
     1921 atgccattaa ttctatcaag tgaaatttaa ttggcgatga ctattaccga aaaaataatt
     1981 gcacgggcgt catcaatgcc atcggtagct cctgatgatg ttgtatttgt taaggtagac
     2041 aaattaatgg tccatgacgt ctctggacca ggagtaatca aggtatttga agaatgggca
     2101 aaaaaaggtg tccatcttga aagggtatgg aatcctgaca aagtatgggt gtcagaagac
     2161 cattttgttc ctgccgcaga taaaatatcc gcaaacaaca taatgaaact taccaactgg
     2221 actaaaaagt ttggtataaa aaggcattac aaatacggac ttggacagta tggcatttgt
     2281 catacattgt ctcacgaaga aggcctggta ctgccaggtg aagtttatgt tggaggtgat
     2341 tcgcacacca acactactgg tgggcttggt gcatttgccg taggtttggg acatactgat
     2401 attgc
//
LOCUS       DATLQL010000174         1016 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1107480, whole genome shotgun sequence.
ACCESSION   DATLQL010000174 DATLQL010000000
VERSION     DATLQL010000174.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1016)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1016)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1016
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1107480"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(243..389)
                     /locus_tag="VNB68_01790"
     CDS             complement(243..389)
                     /locus_tag="VNB68_01790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36116.1"
                     /translation="MTRVSVPFTEGHYYGKDERPNTELADNSIFINGSPCDSPVRAGF
                     VPLW"
BASE COUNT          326 a          188 c          197 g          305 t
ORIGIN      
        1 tggcatctga atcaataatt aaacatgagt aaaacgactc ctgaaagatt cattgcccta
       61 cagattgaca aagatttctg atgagtgcga ctctaattta ccacaagatt ataagaggag
      121 atatgggaga aaaatttccc actaaacgcc gcaatagtca aaatcatatt ctattagtat
      181 cataattagt aaactatcat tgatacgttg gttatgggga cctttgattg aagaggagcg
      241 ggttaccaca aaggtacaaa acctgctctt actggtgagt cacaaggact cccgttgata
      301 aagatgctat tatcagccag ttccgtgttt ggcctttcat ctttaccata atagtgccct
      361 tcggtgaacg gaacagaaac ccgggtcacc gttttacagg agtccttata caatatactt
      421 catcgtttaa taacgctgtt attggtgtta atgtctctaa ttaagcttct ctgatcttca
      481 taaattatat acacttatca tctcgttcat tacaaagaac tagacggaca tctcattcat
      541 cagatgacac tgcgtattaa aaccgaattt ctatccatac aaggattaat ataaaatgca
      601 cgaagagttt gctcagttct cagaattgtt gatctaaatt ctatgagaaa cgaaagataa
      661 cctgagttcg ttacggattc aattgaagtg gaggcgtcaa ccaggttctc agaataatag
      721 ccgttcattg tcgtatgaaa agaccagagt gaatgcaaga cacaagattt atcagatgct
      781 aaaaacctta ggttgacgtc accatttttt acaagttgtt tgcatcaaga gtttaaaatt
      841 aaacaggtat ataggagtca tagattgaaa catcatggca aatcgaatgc tgtatatatg
      901 gctcatggga ccaatagcgt ggctgacgtc ctgaagtttt gcagaaactg aactatgcca
      961 ctcctggggg aatcctttct gctggtcagt tttgtagttg cgaattcttt attaga
//
LOCUS       DATLQL010000175         1115 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_43060, whole genome shotgun sequence.
ACCESSION   DATLQL010000175 DATLQL010000000
VERSION     DATLQL010000175.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1115)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1115)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1115
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43060"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            137..352
                     /locus_tag="VNB68_01795"
     CDS             137..352
                     /locus_tag="VNB68_01795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36117.1"
                     /translation="MNGIVDMRKSKTAGISILVISILAFCGYAYILLATEWGVMAMEI
                     TILLIVGTLATIMAWIGYTMATAPKES"
     gene            complement(373..>1115)
                     /locus_tag="VNB68_01800"
     CDS             complement(373..>1115)
                     /locus_tag="VNB68_01800"
                     /inference="COORDINATES: protein motif:HMM:NF014527.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase family
                     protein"
                     /protein_id="HVD36118.1"
                     /translation="SLNHKKKLIAEVLLQKVNNIYSVFCQTSGVQGDYRLRNLEFLAG
                     INSPITYYKENGCTFKIDVANAYFSPRLSTERMRIANLVKDNEVIVNLFGGVGTYSVL
                     IARGNKTAKVYSIDSNIFAHELCIENSRINKVNDRVISLFGDAKVVVNNQLKEKATRV
                     LMPLPEKAREFVEEAVSSLINGEGTVHFFAHVKADSKKDAIDKGAVETNDAFKRYKIS
                     IDGVRVVREVGPRLYQIVSDVRVISSMK"
BASE COUNT          320 a          228 c          196 g          371 t
ORIGIN      
        1 aacgagcaat gacgctgcaa taaaaatgta tgaacgaatt aactttcaaa caaaatcaag
       61 actgaggtct tattatcgtg atggggaaga cgcttatctc atggcattag agctatcttg
      121 agtatcatta gccaaaatga atggaattgt tgatatgaga aaaagtaaaa ccgctggcat
      181 ctcgattctg gtaatttcta tactggcttt ctgtggttat gcctacatat tgctcgcaac
      241 tgaatggggt gtaatggcca tggaaatcac gatactttta atcgtaggta ccctcgcgac
      301 cataatggct tggatcggat ataccatggc aacggcaccc aaggaatcat gatcgattca
      361 attctatcga ttctatttca ttgaagaaat tacgcgcacg tcagaaacta tttgatatag
      421 ccttggacct acttctctaa ctactctcac tccatcaatt gagattttgt accttttgaa
      481 agcatcatta gtttctacgg ctcccttatc aatagcatct ttcttgctat cagctttaac
      541 atgcgcaaaa aagtggactg tgccttcccc attgattaga gatgaaactg cttcttcgac
      601 aaattccctt gctttttcag gcaatggcat gagcactcgc gttgcttttt ctttcaactg
      661 gttgttcaca accactttag catcaccaaa aagggagata actctgtcgt tgactttatt
      721 aattctacta ttttcaatgc atagctcatg ggcgaagatg ttcgagtcta ttgaatatac
      781 cttggcagtt ttgtttcccc gtgcgataag taccgaatat gtgccaacgc caccaaataa
      841 gtttactatt acttcattat ctttaaccaa gttcgctatc ctcattcttt ctgttgatag
      901 tctaggagaa aaatacgcat tagccacatc aatcttaaat gtacatccgt tttctttata
      961 gtatgttata ggactattaa ttccggctag gaactcgaga tttctcaatc tataatcacc
     1021 ttgcactcct gatgtttggc aaaaaactga gtatatgtta ttcacctttt gaagaagtac
     1081 ttctgcaatt aatttttttt tatgatttag tgact
//
LOCUS       DATLQL010000176         1053 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2352803, whole genome shotgun sequence.
ACCESSION   DATLQL010000176 DATLQL010000000
VERSION     DATLQL010000176.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1053)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1053)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1053
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2352803"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..454
                     /locus_tag="VNB68_01805"
     CDS             <1..454
                     /locus_tag="VNB68_01805"
                     /inference="COORDINATES: protein motif:HMM:NF020893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HVD36119.1"
                     /translation="AGIIGASGATIGSTAIYLVVRKVGRFGIIKYGRYMLLDEKKLSK
                     VEDWFEKHGSKAVFLARMAPGMREIISIPAGISRMNFTKYIVFTFSGSLVWSISLTVI
                     GYMFGKTWQSAVTNYTQVLNYALVLTLVAVSGYYIIHRHMKKRCVEND"
BASE COUNT          332 a          174 c          212 g          335 t
ORIGIN      
        1 ggctggaatt attggagcgt caggcgcaac tataggctcg actgcgatat acttggtagt
       61 aagaaaggtt gggcggtttg gaataattaa gtatggaaga tacatgcttc tggatgaaaa
      121 gaaactttcc aaagtagaag attggtttga aaagcatggc tccaaagcag tctttcttgc
      181 aagaatggcg cctggtatgc gggagattat ttccatccct gcaggtataa gtagaatgaa
      241 ctttacaaaa tatatcgtat ttactttttc tgggtcactt gtctggagta tcagtctgac
      301 tgtaatagga tacatgtttg gtaagacctg gcagtctgca gtaacaaatt atacacaagt
      361 tctaaattat gcgttagtat taacacttgt agctgtttct ggttattata ttatacatag
      421 acatatgaaa aaaaggtgtg tagagaatga ttagttgact aaagagaaca accgccccca
      481 gcccatcgtc ttgcataacc tatcttatat ccaaaacaat aagactctga cctatccaag
      541 ctacaatgag cattgtatct ttgaccatta acgaggtcta cttttgtctg tatcgagcat
      601 ctatgtcgtc agtcttttga attgcaaggg cggtaagtaa agatgtaaga gaatatcttg
      661 agtagtataa cttacagatt tcaaattaat ggacaagaat tggaaaatac ttctgagtct
      721 tacatcttgg attttaaatg aaaattagga cgcaaaatta agcatcgcca gttaagatca
      781 gcaaagagcc ttatagtatc ctggattaac accttgtagg attaatgctc tttaggcagc
      841 cggtaccttt tccattttat ctaaactcga aaagaatctt attatttttt gacttggtaa
      901 ctctcagttt ctgttaaaga aagattagaa ggattctcat tggaagtgga ttctgcttga
      961 tctgctagat tgccaatctg aaccatctca agagcaaatc tttccaagag taatactgct
     1021 tgaaaatctg tatttagtct atacatattt gtt
//
LOCUS       DATLQL010000177         1115 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_43252, whole genome shotgun sequence.
ACCESSION   DATLQL010000177 DATLQL010000000
VERSION     DATLQL010000177.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1115)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1115)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1115
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43252"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..200
                     /locus_tag="VNB68_01810"
     CDS             <1..200
                     /locus_tag="VNB68_01810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HVD36120.1"
                     /translation="DYAKLAEAYGAQGVKAQSINELDKAIRSALKSEVATVIDIPIDP
                     EEDVYPFVAPGTGLKDMITGA"
     gene            252..737
                     /gene="ilvN"
                     /locus_tag="VNB68_01815"
     CDS             252..737
                     /gene="ilvN"
                     /locus_tag="VNB68_01815"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1990610 - acetolactate synthase regulator
                     activity [Evidence IEA];
                     GO_process: GO:0009082 - branched-chain amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HVD36121.1"
                     /translation="MYIVSALVENKPGVLFRVTNLFRARNFNIESITVGPTEHSDLSR
                     MTITIKSDDRTLEQLAKQLRKLIDVVDVKVLDRDNTVYRELALIKMKAVDPTTRMEIT
                     NFASIFRANILDIGKETIIVELIGTPDKIDAFKNLVNHFGIIQLARTGVSALPRGVEF
                     N"
     gene            734..>1115
                     /locus_tag="VNB68_01820"
     CDS             734..>1115
                     /locus_tag="VNB68_01820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019707.1"
                     /note="catalyzes condensation of pyruvate and acetyl-CoA
                     to form (R)-citramalate; functions in isoleucine
                     synthesis; belongs to the alpha-IPM synthetase/homocitrate
                     synthase family; it is difficult distinguishing these
                     proteins from enzymes in that family; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HVD36122.1"
                     /translation="MINTGEKVRIFDTTLRDGEQTPGVSITPEQKVQIAIKLDKLGID
                     TIEAGFPIVSNGEMQAIKRINKEGLNAEICGLARTINSDIDSALKCDLKYIHTFIATS
                     DIHLKYKLKMTRDQVLEKAVSAVEY"
BASE COUNT          390 a          193 c          236 g          296 t
ORIGIN      
        1 ctgactacgc caaactagcc gaggcatatg gggcacaagg agtaaaagcg caatctatca
       61 atgagttgga taaggcgatt cgatctgctc ttaagtcgga ggtagcaaca gtaatagata
      121 ttcctattga tccagaagaa gacgtttatc cttttgtggc tcctggaact ggtctaaaag
      181 atatgatcac aggtgcatga actctgagtg tcaaaaaagc aactgttttc tcaaatgagt
      241 ctcctaagac cttgtacata gtatctgcgc tggtagaaaa taagccgggt gtgttattca
      301 gagtaaccaa cctttttagg gctagaaact ttaacattga aagcataaca gtaggaccta
      361 ctgaacattc agatctttct agaatgacaa taactattaa aagcgacgat agaacgttag
      421 aacagctagc aaaacaactt cgaaaattaa tcgatgtagt agatgtaaaa gttcttgata
      481 gagataatac ggtgtatcgc gagcttgcat tgatcaaaat gaaggcagtc gatcctacta
      541 ccagaatgga aataactaat ttcgcatcta tatttagagc aaatatactt gatattggaa
      601 aagaaaccat tattgtagaa ctcataggga cgcctgacaa gatagatgca tttaagaatc
      661 tagttaatca tttcgggatc atacagttgg ctaggactgg cgtatctgcc cttccaaggg
      721 gagtagagtt taattgataa atacaggcga gaaagtcaga atatttgata ctacactaag
      781 agatggtgaa caaaccccgg gagtttcaat tacaccagaa cagaaagtcc agatcgcgat
      841 taaacttgat aagttaggta ttgatactat cgaagcaggc tttcctattg tctctaatgg
      901 agaaatgcaa gcaattaaaa gaataaacaa agaagggttg aatgcagaaa tatgtggctt
      961 ggctcgtaca ataaattctg atatcgactc cgccttaaaa tgtgacttga aatatatcca
     1021 caccttcata gcgacctctg acattcattt gaagtacaag ttgaaaatga ctcgtgatca
     1081 agttttagaa aaagcagtat cagcagtgga gtacg
//
LOCUS       DATLQL010000178         1030 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1998008, whole genome shotgun sequence.
ACCESSION   DATLQL010000178 DATLQL010000000
VERSION     DATLQL010000178.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1030)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1030)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1030
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1998008"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(81..>1030)
                     /locus_tag="VNB68_01825"
     CDS             complement(81..>1030)
                     /locus_tag="VNB68_01825"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HVD36123.1"
                     /translation="LSKNLNNSYASNCVIVLMKYFSRFVIAFFLLFVAVLIFSPTILL
                     TYAGPAPDQNASPPLTVNSSNTFRIAVIGDVDSNPGLTEQLDLMNKYHVQTLLLAGDF
                     EYTDGKAVLDDLTKHGFSKNNSDIVVGNHDSAKDVNSWLGTNTTFGKHVFAQGKFAVF
                     NIDANIQFDCSSPQFLTVKSNIEQSQAQYKIALVHQPFVTVKSKHPDNGQFDCYNPMF
                     KANNIIAVLQAHNHNYQKEIVSDILYGVFGTGTHDVGSKMYPCDSKTDQNGVPALCIT
                     GENGITILDLQIENASSKHIDGWFVNSAEKVIDRFSLGN"
BASE COUNT          303 a          192 c          204 g          331 t
ORIGIN      
        1 gaaaacgata ccaatctggt aagctatgga tatctcaaat gaatctcctt tgagaaggct
       61 gaacaatgag gaagaattcc ctaattgcct agagagaacc tgtcaattac tttttcagcg
      121 ctattgacaa accatccatc aatgtgtttt gaactggcat tttctatctg caagtctagt
      181 atagttatac cattctcccc agttatgcat aatgcaggta ctccattttg gtcagtcttt
      241 gaatcacatg ggtacatttt tgaacctaca tcatgggttc cggtgccaaa aactccatag
      301 agaatatcag aaacgatttc tttttggtaa ttgtggttat gggcttgaag aactgcgatt
      361 atattattgg ctttgaacat cgggttgtag cagtcgaatt gtccattgtc tggatgcttg
      421 cttttcacag taacaaacgg ttgatgaact aaagctattt tgtactgtgc ttgtgattgc
      481 tcgatgttgc ttttaaccgt tagaaattgc ggactggagc aatcaaattg gatgtttgca
      541 tctatgttga agaccgcaaa cttgccttga gcaaaaacat gctttccaaa agtggtatta
      601 gttccaagcc atgaatttac atctttagca gagtcatgat taccaactac aatatcagaa
      661 ttatttttgc tgaatccatg ctttgttagg tcatcaagta cagctttccc atcggtatac
      721 tcgaagtctc cagctaacaa caacgtttga acgtggtatt tgttcattag gtcaagttgt
      781 tcagttagcc ctggattgga atctacatca ccaattactg ctatcctgaa tgtgtttgat
      841 gagttaactg ttagaggcgg acttgcattt tgatcaggtg ctggtccggc ataagtcaac
      901 agaatcgtgg gactgaagat taatactgcg acaaatagca aaaaaaatgc gatcacaaat
      961 ctactaaaat atttcataag aacaattaca cagttcgacg cgtaactgtt gtttaaattt
     1021 ttcgacaagt
//
LOCUS       DATLQL010000179         1046 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_755928, whole genome shotgun sequence.
ACCESSION   DATLQL010000179 DATLQL010000000
VERSION     DATLQL010000179.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1046)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1046)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1046
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_755928"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            428..>1046
                     /locus_tag="VNB68_01830"
     CDS             428..>1046
                     /locus_tag="VNB68_01830"
                     /EC_number="1.8.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0050311 - sulfite reductase (ferredoxin)
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite/sulfite reductase"
                     /protein_id="HVD36124.1"
                     /translation="MKRTATHGSKYRNVSPPKPNPRWGKEEETEIFAQNVRRFRQGKL
                     SEDDFRRFRLQHGAYGSRLQMNYSMIRIKVPSGEINPEQLEKIASLSESFSIGSAHVS
                     TRQNIQLHWVQLEDVSEVMRGLVEVGLTTREACGNTVRNVMCSHFAGVCSDEAFDATP
                     YASAIARFFIRNPMCQNLPRKFKINFACCKDHGLARIADIGLIPMI"
BASE COUNT          339 a          176 c          229 g          302 t
ORIGIN      
        1 ataatctgcc cgaaaccggt aattacatgg aagattgggt acgtgtgtaa attagaagaa
       61 aacggagatg ccaggaaata cgcggcaaaa tccgacgagg tgctgattat ggctttatca
      121 aatttgtcat tgtaatttgg cgcaacgttc gaagcgtgta tttgttttgg ttctagatgc
      181 tggttaaacc taatagaatc tttaacgcac gcatcagttt ggcggaacat aagaccatag
      241 taaatgatat gaagtatacg acttaatgtc gaaataaagt atttaataac cgcttaaatt
      301 atgaaagatt acaatattaa ccagtgctca acaatgggag cagtttttgc caataatgtg
      361 tgatgtattt actaacatga cctgtttcta caaaaatata taaggattta cacgacgata
      421 tagggtattg aaacgtactg cgacccatgg ctctaagtat agaaatgttt cacctcccaa
      481 acctaatccg agatggggta aagaggaaga aactgaaatt tttgcccaga atgtcagacg
      541 atttagacaa ggtaaactgt ccgaggatga ttttcgacga tttaggttac aacacggcgc
      601 ctatggttcc agactgcaaa tgaattacag tatgattaga attaaggttc caagtggcga
      661 aattaatccc gaacaattgg aaaaaattgc aagtttatca gaatcctttt ctattggctc
      721 tgctcatgtt tctactcgtc agaatattca actacattgg gtgcagttag aagacgttag
      781 cgaagtgatg agaggacttg ttgaagtggg tcttaccact agagaagctt gcggtaatac
      841 tgttagaaat gtgatgtgta gtcattttgc aggagtctgc tcagacgaag cattcgatgc
      901 tactccgtac gctagtgcaa tagcaagatt ctttatcaga aaccctatgt gtcagaatct
      961 tcctcgaaag tttaagatta attttgcatg ctgcaaagac cacggactgg caagaattgc
     1021 agatattgga ttgattccaa tgataa
//
LOCUS       DATLQL010000180         2680 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_755988, whole genome shotgun sequence.
ACCESSION   DATLQL010000180 DATLQL010000000
VERSION     DATLQL010000180.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2680)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2680)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2680
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_755988"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..308
                     /locus_tag="VNB68_01835"
     CDS             <1..308
                     /locus_tag="VNB68_01835"
                     /inference="COORDINATES: protein motif:HMM:NF012686.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36125.1"
                     /translation="IILVAGNLAASGYILSVVLSIPLIYAMLISTAVVLLYTYFGGLY
                     SCAYTDIFHIYLAVVGFWLGLLYFIGPWSPIPGGLETIMCHQVSWICRVCLILKTGL"
     gene            272..1168
                     /locus_tag="VNB68_01840"
     CDS             272..1168
                     /locus_tag="VNB68_01840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36126.1"
                     /translation="MSGLFDLKNGALVNWAAIMSLGLGDIVALDFMERVFSASGGRTA
                     QKSCYFAAGLTMLILVPTTMIGIIGHTLEPNSADPFTLYPIVAIKHVPEVIGILMLVS
                     TISCGMSTANGGTLAIASVISRNILQRNILTRLKGRTLNDKQLLLATRLLVIPMFFTA
                     FALGAIIPRPGIYLILAFDIVFAGCLVPLVMGTYWKKSTSAAAVASIAIGSTLRMILY
                     FTISTASPDSPYFAYLGLDTFIPPIVSFVVFVVVSLATYKRNPSRHDVIYLIPSEVDV
                     VSGADVSKWVNPIDVRKIPSRR"
     gene            1259..1690
                     /locus_tag="VNB68_01845"
     CDS             1259..1690
                     /locus_tag="VNB68_01845"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HVD36127.1"
                     /translation="MAVDKSGYKDKIIGYSITLAKGLGASVTAIHVLDKSSFGMVGDL
                     LSYYRGGNIAEYEGVLKKQAEEFLNETKLLLEKAGVRASIDVVISKSSAAEGIIDFAK
                     EADADLIIIGTKGLTGVERFLMGGVATSVIRHAHCPVLAVR"
     gene            complement(1803..1985)
                     /locus_tag="VNB68_01850"
     CDS             complement(1803..1985)
                     /locus_tag="VNB68_01850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36128.1"
                     /translation="MLKKFGCGACGETFKDRFGLIEHAEAAHDKKTTYLCIVCDESFE
                     NEPSFKLHMLRNHKFV"
     gene            2428..2628
                     /locus_tag="VNB68_01855"
     CDS             2428..2628
                     /locus_tag="VNB68_01855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36129.1"
                     /translation="MLWQSCNNCGKFILCLKETKSLSERPYEIDGSHLLQQKETEKQH
                     RELAKEGEINKKPKKGRLKGKN"
BASE COUNT          806 a          492 c          561 g          821 t
ORIGIN      
        1 ttatcattct cgtagcgggt aaccttgcag cgagtggcta tattctgtca gtggtcctga
       61 gtataccgct gatttatgcc atgttgattt caactgcagt tgttttgcta tatacatatt
      121 ttggaggatt gtattcgtgt gcttacaccg atatatttca tatttacttg gccgtagttg
      181 ggttttggct aggacttctc tatttcattg ggccatggtc accaatacct ggtggactag
      241 agaccataat gtgccaccag gtttcatgga tatgtcgggt ttgtttgatc ttaaaaacgg
      301 ggctctagtt aattgggctg ctatcatgtc tttggggttg ggtgacatcg tagcactaga
      361 tttcatggag agggtttttt cagccagtgg aggacgcact gctcagaaga gctgctactt
      421 tgcggcgggc ttgacgatgc tcattcttgt tccgacaact atgattggga ttattgggca
      481 tactctcgaa ccgaacagtg ctgatccctt tactctctat ccaatcgtgg ctataaaaca
      541 tgtaccagag gtaattggaa tattgatgct tgtgagtaca ataagctgtg ggatgtctac
      601 cgccaatgga ggtacattag ctattgcaag tgtgatatct aggaacatac tgcagcgcaa
      661 tattctcact cgattaaagg gaagaacttt gaacgacaaa caactactac ttgctacgcg
      721 gctcttggta attcccatgt tctttactgc ttttgcactt ggagcgatta ttcctcgacc
      781 ggggatttac ttgatacttg catttgatat tgtgttcgct ggttgtttag tcccacttgt
      841 aatgggcacg tactggaaaa aatctacttc agctgccgca gtagcttcaa ttgccattgg
      901 atcgacacta agaatgatac tttatttcac tattagcact gcttctcccg atagccctta
      961 ttttgcctat cttggcctag ataccttcat tccaccgata gtatctttcg tagtatttgt
     1021 cgtagtgagt ttggctacat ataagagaaa tccttcaaga cacgatgtca tctatttgat
     1081 tccctcagaa gtggacgtgg tatccggcgc agatgtttcc aaatgggtca acccaattga
     1141 tgtaagaaag attcctagta ggagatagat agtgagggag gatgggtgaa taaaaatagc
     1201 tcaacaacca aatgaggaac cagcaaacta cgataaacaa aaagttcaga aaatattaat
     1261 tgctgttgat aaatcggggt ataaagataa gattatagga tattccatca ccttggcaaa
     1321 aggacttgga gctagtgtaa ccgcaataca tgttttggac aagtcttcct ttgggatggt
     1381 tggcgatcta cttagttact atagaggagg aaatatcgca gagtatgaag gagtgttgaa
     1441 aaaacaagca gaagagtttc tcaatgaaac aaaacttttg ctagaaaagg caggagttag
     1501 agccagcata gatgttgtta ttagcaaatc ttcagccgct gaaggaatta ttgattttgc
     1561 taaagaagct gatgcagatc tcataattat tggaacaaaa ggtttgactg gagttgaaag
     1621 atttcttatg ggaggagttg ccacctcggt gatacgacat gctcactgcc cagtattggc
     1681 agtgagatga taattaatgg aatcatgcga tctcgcaatt tgaaaaataa acagaaaatg
     1741 tattgaaatt aaatccaaaa tataattttc tattatatcc caaaaatacc acgtcagctc
     1801 cttcacacaa acttatgatt tctcaacata tgtaacttga aggatggttc gttttcgaaa
     1861 gactcatcgc aaacaatgca caaataggta gttttcttat catgtgcagc ttctgcatgt
     1921 tcaataagcc caaatctgtc tttgaatgtt tctccacatg ctccgcagcc aaattttttc
     1981 aacacaaacc gttactgctt ttcgtattta agagttgatg agactttggt acctggatct
     2041 tttgcgattg aattgtatta aatgtaaact tgtaaagctc tcttatcgta ataatacgta
     2101 ccaaattgtc gaaaatttta atccgtgcgt aatggcacag atattttata cgctctctgc
     2161 atctctgcaa aatgaaaaat tattactaaa ttgggcaaat ctgtctttaa tctacttata
     2221 ttcaaagctc ccaaacatcg tttaacagtt ctcgcctaac cttcaaaaat atgtagtctc
     2281 ttatattgca gttatctttg ttataactaa acttataagt taagttccca aagttataca
     2341 atggaatgtc ctcattgtag ggccaaattt gaaccgaata tgcgatatta cccgatcgga
     2401 ttgaataggc acggagaata tgggtacgtg ttatggcaat cctgcaataa ttgtggcaag
     2461 tttattcttt gtctaaagga aacaaagagt ctttcagaac gtccctatga aatagacggt
     2521 tctcatctgc tgcagcagaa agagacagaa aagcagcata gagaattggc aaaagaagga
     2581 gaaattaaca aaaaaccaaa gaagggacga ctaaaaggga aaaactagag attgaaccat
     2641 cggataaact ttactcatag caatgcttca ggcatcgtat
//
LOCUS       DATLQL010000181         1417 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_756187, whole genome shotgun sequence.
ACCESSION   DATLQL010000181 DATLQL010000000
VERSION     DATLQL010000181.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1417)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1417)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1417
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_756187"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1417
                     /locus_tag="VNB68_01860"
     CDS             <1..>1417
                     /locus_tag="VNB68_01860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit B''"
                     /protein_id="HVD36130.1"
                     /translation="TKLIELGEDPKDPGGYFVINGSERVIIGLEDLSYNKIIVDTEET
                     TGNLVYKAKVYSSIVGYRAKLELIMRPDGSIVAKIPGSPVDIPLITLIRALGLESDKD
                     IADGVSLNSFIQDELEPSFEKAGEIVTSRDAIVYISKRIAPGMLEEFQIKRAETLLDW
                     GLLPHLGKNPENRNEKALFLGEATCKLVELRLNLVASDDKDHYGNKVIKFAGQMLADL
                     FRTAFRNLVRDMKYQLERSGQKRGINAVAAAVRPGIISDKLNNAIATGNWGRGRVGVT
                     QLLDRTNYISTISHLRRIQSPLSRSQPNFEARDLHSTHFGRICPAETPEGSNCGLVKN
                     IALSSIISVSVLVSEIIEKIYELGAHPVEEASDILRKNGTRIFVDGRLIGYYDNGQQL
                     TDTLRSLRRSGKIHAHVGIYYYSNENENATKRLYVSCNSGRILRPLAIVREGKPVITL
                     EVLDLIKRNMKSWSDLLWMGMI"
BASE COUNT          479 a          242 c          321 g          375 t
ORIGIN      
        1 actaagctta tagaacttgg agaggatccg aaagatccag gaggatattt tgtgattaat
       61 ggctctgaac gagtaattat tggtttggaa gacttgtctt acaacaagat aattgtggat
      121 acggaggaaa cgactggcaa cttggtttac aaagcaaagg tatattcttc aatagttgga
      181 tatcgtgcaa aattggaact gattatgagg ccagatggtt caatcgtcgc aaagatcccg
      241 ggatcacctg ttgatatccc acttattacg ttaattagag cgctgggact tgaatctgat
      301 aaagatattg cagacggcgt atcactaaat tcattcatac aggatgaatt agaaccctca
      361 tttgagaagg caggagaaat tgtaacaagt agagacgcga tagtctacat aagcaagaga
      421 attgctccag ggatgctgga agaatttcaa ataaagagag ctgaaacatt acttgattgg
      481 ggattgctac cacatcttgg aaagaatcct gaaaatagaa acgaaaaggc cctctttcta
      541 ggtgaagcaa catgcaagct cgttgaattg aggctcaatt tggtagcatc tgatgacaaa
      601 gatcattatg gaaataaagt tataaaattc gcaggtcaaa tgctcgccga tcttttcaga
      661 acagccttta gaaatcttgt cagagacatg aaatatcaac ttgaaagatc tggtcaaaag
      721 agaggaataa atgcagtggc cgcagcagta agacccggca taatctctga taaattaaat
      781 aatgccattg caactggaaa ttggggcaga ggaagagttg gtgttaccca actactggac
      841 aggacaaatt atatatcaac tatcagccat cttcgcagaa ttcaatcacc tttaagcagg
      901 agtcaaccta actttgaagc aagggatctt cactctactc acttcggcag aatttgcccg
      961 gctgagactc ctgaaggatc aaactgcggt ttggtaaaaa atattgcatt atcctctata
     1021 atctctgtaa gtgtcttggt ttcagagata attgaaaaaa tatatgaact aggcgctcac
     1081 cctgtcgagg aggcttctga tatactacga aaaaatggta ccagaatatt tgtggatgga
     1141 cgtctaatcg gatattacga taatggccag cagctgacag atacactaag aagtttgcga
     1201 aggtcaggaa aaatacatgc ccatgtaggt atttactact attccaatga aaatgaaaat
     1261 gcaacaaagc gtctttatgt aagttgcaat tcgggaagaa tactcaggcc acttgctatt
     1321 gtaagagaag ggaaaccagt aataactttg gaggttcttg atttgataaa gaggaatatg
     1381 aaatcctggt ctgacttgct gtggatgggc atgatag
//
LOCUS       DATLQL010000182         1434 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1286954, whole genome shotgun sequence.
ACCESSION   DATLQL010000182 DATLQL010000000
VERSION     DATLQL010000182.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1434)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1434)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1434
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1286954"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            117..>1434
                     /locus_tag="VNB68_01865"
     CDS             117..>1434
                     /locus_tag="VNB68_01865"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004072 - aspartate kinase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HVD36131.1"
                     /translation="MGYRTFVDTSINLDRYNTPDMRLIMKFGGRAVDSGEKVLHVANL
                     IKNYKNRGREIVAVFSAVDGMTDEILRVSESVKKGNKTMIEDFLVKTRDAHVKIIEYS
                     IKNKDLKSKVMDIIEKLLSEMADLFNGIVILSEVTPKALDYLLSFGERLLAPIMVFTL
                     LDLGIEAVFLTGKEAGILTDSNFGEARPLMDTTKLRLKHNIEPILQSNKIPVITGFIG
                     ADQNGNVTTLGRGGSDYTATIIGASVDADEVYLWGDVDGLLTADPKIVKNARVLKEVS
                     FAEATELSLFGAKYMHPRALEPVLDTKIPIHIRNTFNLDHKGTIISKKTSRSAQKIVK
                     SIIAIRHTALIDVSGGVMVGTPGTAARIFDALAKKKVNIMMISQSPSESSISMVVKKN
                     DLDTATTTLDLTLLGTVIRNLKVNNDVAVIAVVGSGMRGIKGVAAKV"
BASE COUNT          482 a          239 c          337 g          376 t
ORIGIN      
        1 aggagttgag aaatatatct agtaaggtaa atcgatgtgg caaaaaacag gcaagacaag
       61 cagtctcctg ttaaatgaac gaaatttagc gttaagatga caagggtcga aatttagtgg
      121 gttacagaac gtttgtagat acaagtatta atttggacag atataatacg ccagatatgc
      181 ggctgataat gaaattcggg ggaagagcag tcgactctgg cgaaaaagtt cttcatgtgg
      241 cgaatttgat aaagaactac aaaaatagag gtcgagaaat tgttgcagtc ttctcagcag
      301 ttgatggaat gactgatgaa atattgcgag tctctgaatc cgtaaaaaaa ggcaataaga
      361 cgatgattga ggactttcta gttaagacta gagatgcaca cgtaaaaata attgaatatt
      421 cgataaagaa caaagacctc aaatcaaagg tgatggatat tattgaaaaa ctcctttcag
      481 agatggcaga tctttttaat ggtatagtaa tactatcaga ggtaacgcct aaagctcttg
      541 attatttact ttcattcggt gaaagacttc tggcacccat aatggtattc acgttactgg
      601 atttaggtat agaagcagtt ttcttgaccg gtaaggaagc tggtattctt actgattcga
      661 attttggaga ggccaggcca cttatggata caactaaact tcgattaaag cacaatattg
      721 aacctatctt acagagcaac aaaattccgg taataacagg cttcatcgga gcagatcaaa
      781 atggaaatgt cacaacattg ggtaggggcg gctcagatta tacagctaca atcattgggg
      841 ccagtgtaga tgctgatgag gtctatttat ggggtgacgt tgatggcctc ttgacggcag
      901 acccaaaaat agtaaagaac gcaagagtac tgaaagaagt ctctttcgca gaggcgaccg
      961 agctctcctt atttggagcc aaatatatgc atccaagagc gctcgagcct gtgttagaca
     1021 ccaagattcc catccacata aggaatacct ttaatttaga tcataaaggc acgattattt
     1081 cgaaaaagac gagtagatct gctcaaaaga tagtcaagtc aataatagcc attcgtcaca
     1141 ctgctttaat agatgtaagt gggggtgtca tggtcggtac gcctgggaca gctgcaagga
     1201 tttttgacgc cctggcaaaa aagaaagtga acatcatgat gatttcacag agtccttcgg
     1261 aatcgagtat ttcgatggtt gtaaaaaaga atgatctaga caccgccact acaacattgg
     1321 atttgacgct tttagggaca gtaatcagaa atctaaaggt aaataatgat gtagcagtca
     1381 tagccgttgt cggctccggt atgaggggaa ttaaaggagt tgctgcgaaa gtgt
//
LOCUS       DATLQL010000183         2824 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_44721, whole genome shotgun sequence.
ACCESSION   DATLQL010000183 DATLQL010000000
VERSION     DATLQL010000183.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2824)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2824)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2824
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44721"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(33..200)
                     /locus_tag="VNB68_01870"
     CDS             complement(33..200)
                     /locus_tag="VNB68_01870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36132.1"
                     /translation="MRKLIYLASGQRQHLVVNQILTLKVFKELSEAGETFEINVDYTR
                     GIRGGTASHKH"
     gene            273..416
                     /locus_tag="VNB68_01875"
     CDS             273..416
                     /locus_tag="VNB68_01875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36133.1"
                     /translation="MAEKLISDILSQDDVILSINSGSGICEARVEKNLPFRIREQWAT
                     IGH"
     gene            543..668
                     /locus_tag="VNB68_01880"
     CDS             543..668
                     /locus_tag="VNB68_01880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36134.1"
                     /translation="MRANFVKMYDKKGNIIQDRVAKYGDIFKKYGEEEIVYLGRK"
     gene            complement(897..1874)
                     /locus_tag="VNB68_01885"
     CDS             complement(897..1874)
                     /locus_tag="VNB68_01885"
                     /inference="COORDINATES: protein motif:HMM:NF013595.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36135.1"
                     /translation="MDSRIVTFFVLAVFSSSMILNGAISVYGADQYSFVRKWGSYGAV
                     AGKFSQPIEIAIDSKGYLYVTDLTALTHDVQKFTKNGTYVTSWGFLGFGPGRFTNPAG
                     LTVDSSDHVYVTDNGNPDNGIQKFTDNGTYITGWGTVGLQPGAFINPSGIGVDSSGNV
                     YVNDFGENNRVQKFDSNGDYMMQWGTVGRNDGQFMNPTDTLVDPQGLVYVVDSGNDRI
                     QKFDGNGKFISKWGDSGRGDGQFDRPGGIAIDSSGFIYISDIGNNRVQKFTVDGQFVT
                     KWGSSGSGDGQFNGPMGLTVDPSGYVYVVDIGNKRVQVFAPSNQTTANP"
     gene            complement(1964..2533)
                     /locus_tag="VNB68_01890"
     CDS             complement(1964..2533)
                     /locus_tag="VNB68_01890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36136.1"
                     /translation="MKEYGLALGVTAIGFLIMGSSAVMSIGKVSAFPPSIYGEGKFLF
                     GNIGSIQNDKDGKPAWLLSGHWKSNLINMSENDKANSSAFSTSFEMVMLDGKNAHTHA
                     ITNFILKGKSTEGNSTVVFNGTSSASLRNGLVQNVPTTIKFMGNKVVSIWVDPSMVDN
                     HFGNTPIYGTIMKPDAGFDRANSNSNSSR"
BASE COUNT          880 a          579 c          498 g          867 t
ORIGIN      
        1 atttgtgaat ttgtaagttt cactttccta tactaatgtt tatgagaagc tgttcctcct
       61 ctaatacctc tggtgtagtc aacattaatt tcaaaagtct ctccggcctc ggataattcc
      121 ttgaagactt tcaaggtcaa tatctgatta acaacaaggt gttgtcgttg cccggatgct
      181 aaataaatga gcttcctcaa aaagacttag aactcgagtt cgattgtttt attaccaact
      241 tcaactaaat aaaaaagcaa atgacgaatg ccatggctga gaagttgatt tccgacatac
      301 tctcacaaga cgatgtcatt ctttcaatca atagtggaag cgggatctgt gaggcgaggg
      361 tagagaagaa tctacccttt cgtattcgag aacaatgggc gacaatcgga cactaagaca
      421 gatcgtggca tatacatcta aatttagagg aagttgcaga agctaggttt gtaaccgaaa
      481 caagaacgaa tggcttaatt agttatagca taagattcat tgattcaaaa ggcagtttgg
      541 ctatgcgtgc caattttgtg aagatgtatg ataaaaaagg aaatattatt caagatagag
      601 ttgcaaaata tggagatatc ttcaaaaagt acggtgagga agaaatagtc tatttaggta
      661 gaaaatgact ttagtgcagc ttcgcgccta ttaaaccatt tttcattttt gatctgattc
      721 ctcaagcatg aatcgcttca aaagtagctc accgataagc gcggagtatt taatttcttc
      781 tgcttaaaga attctgaatc ctcatctcaa tcgcactgat tgaaaacgta caagtcgagt
      841 aaaaagaaca tagtttattt ctaaattatt attaatttac tacagaagtt tcgagtttat
      901 ggatttgccg tagtttgatt tgatggagcg aaaacttgga ctcgcttgtt accaatgtcg
      961 actacataaa cgtacccaga aggatccact gttaaaccca ttggaccgtt aaattgtcca
     1021 tcgccactac ctgagcttcc ccattttgtt acgaattgac catcgactgt aaatttctga
     1081 actctattgt tacctatatc acttatataa ataaaaccag aagagtctat agcaatacct
     1141 ccagggcgat caaattgtcc atcacctctc cctgaatcac cccatttaga aatgaattta
     1201 ccattgccat cgaacttttg aatcctgtcg ttgccactat ctacgacata tacaagacct
     1261 tggggatcga ccaaggtatc agttgggttc ataaattgac catcatttct tcccactgtg
     1321 ccccattgca tcatatagtc accattgctg tcaaactttt gcaccctatt attctctcca
     1381 aaatcattca catagacatt tccagatgaa tctacgccga ttccagatgg attaatgaat
     1441 gctccaggct gcagtccgac tgtaccccat ccagtaatgt atgtaccgtt gtcagtgaat
     1501 ttttgtattc cattatcggg atttccgtta tcagtcacgt acacatgatc tgaggagtcc
     1561 acagtcagtc ctgctggatt cgtgaatctt cctggcccaa atccaaggaa gccccatgaa
     1621 gtaacataag tcccattctt ggtaaacttc tgtacatcgt gtgttagagc agtaagatcg
     1681 gttacgtata gataaccttt cgaatctata gctatctcga tcggttgaga gaactttcct
     1741 gctactgccc catacgaacc ccacttgcgt acaaatgaat actgatcagc accatataca
     1801 gatattgctc cgtttaaaat cattgatgat gaaaagactg ccaaaacgaa aaaagttaca
     1861 atcctagaat ccatgaatat ctactcgata aagaaaacgg tcgtatttat gtattcatat
     1921 gaaccaatgt ttgaaaaggt aacctctaaa gcctgtcctc caactatcta gaggaattag
     1981 aattcgaatt tgccctatcg aatccagcat ctggtttcat tatagttccg tatataggtg
     2041 tatttccgaa atgattatca accattgaag ggtctaccca tatactcact actttattgc
     2101 ccatgaattt gatcgttgtt ggtacatttt gtactaaacc atttcgcaag cttgcagaag
     2161 aagtgccatt gaaaaccaca gtagaattgc cttctgttga cttgcctttc aatatgaagt
     2221 tagttattgc gtgtgtatga gcgttctttc cgtctaacat aaccatctca aacgaggtgc
     2281 tgaatgcaga cgagtttgct ttgtcatttt ctgacatgtt aattaagttt gatttccaat
     2341 gaccggacaa taaccatgcc ggcttaccat ccttatcatt ctgaatgctg cctatgttac
     2401 cgaacagaaa tttaccttca ccataaatgc tcggagggaa cgcgctcact tttcctatag
     2461 acattacagc ggagcttccc ataataagaa accctattgc agtcactccc aaagccaagc
     2521 cgtattcctt caaaatactt ttcattcata gtaataatgg gagaagctta acttaaaggt
     2581 aactcaattc aactccataa cagctactta ctaaaataag gtgttgagat tatcatacat
     2641 gtggatatga tatttctaaa aactcatgac tgagatatat tctatgttga cttgaaaagg
     2701 acgtatggag cattagatct gaaatcagtt tatagagtta caaaccatgt atccagttca
     2761 gtagttatgt ttaggactca tcattgaaca ttcaaggatc attttacata aattcaaaaa
     2821 tatt
//
LOCUS       DATLQL010000184         1895 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_222322, whole genome shotgun sequence.
ACCESSION   DATLQL010000184 DATLQL010000000
VERSION     DATLQL010000184.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1895)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1895)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1895
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_222322"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..657
                     /locus_tag="VNB68_01895"
     CDS             <1..657
                     /locus_tag="VNB68_01895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36137.1"
                     /translation="CYIEISTIQDFGRLVCAFERTHLLTFSFNRNEEHLLATQMDFIS
                     NIPLIYFVKHPKDGQFLAYRHSGGAEEVIVVDSILNPAYIYSPIISIEKFPKAFSRTA
                     RIAKNTGYVPIKLKDLSSLAKVASYRMNYDESPLPLFVFKSKASHVIGTAVTLGESDS
                     IAYFYYVTSVEEPLSSFIKYSSQKSEQPTFSNNIHEHGSIYIKLVRLASTNPLVTIYE
                     "
     gene            716..1447
                     /locus_tag="VNB68_01900"
                     /pseudo
     CDS             716..1447
                     /locus_tag="VNB68_01900"
                     /inference="COORDINATES: protein motif:HMM:NF012441.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine 5'-phosphate decarboxylase"
     gene            complement(1401..1853)
                     /locus_tag="VNB68_01905"
     CDS             complement(1401..1853)
                     /locus_tag="VNB68_01905"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HVD36138.1"
                     /translation="MRNLFDEKSAGIILTTNVLDVHSRKILFLLHSAGHWDFPKGNIE
                     AGETETQAAARELREETGISRFRVLPRFKYSITYSYKRNKRTISKKVTYFLGTTEVTD
                     ILLSSEHIGYCWKDLNKPFDLISYGNTKKSLESVKDFLECELLKIIHY"
BASE COUNT          601 a          367 c          347 g          580 t
ORIGIN      
        1 tgctatatag aaatttcaac gattcaggat tttggaaggt tagtatgtgc ttttgaacgg
       61 actcaccttc tcacattttc ttttaataga aacgaagagc acctgctcgc cacgcagatg
      121 gattttatca gtaacattcc gctcatttac ttcgtaaaac atccaaagga cggtcaattt
      181 cttgcctata ggcatagcgg tggagcagaa gaggtaatag tggtagattc cattttgaat
      241 ccagcctaca tctattcacc tatcatatct atagaaaaat tccccaaagc attttctcga
      301 actgcaagga tagcgaagaa taccggatat gtacctataa aattaaagga tctctctagc
      361 ctagcaaaag ttgcctcgta cagaatgaat tatgatgagt cgcctttacc tttgtttgtt
      421 ttcaagtcaa aggcaagtca tgtaattggc acagctgtta cgcttgggga gtctgacagt
      481 atcgcatatt tctattatgt tactagtgta gaggagccat taagttcatt catcaaatat
      541 tctagccaga aaagtgagca accaactttt tcgaacaata tacatgaaca cggctcaatc
      601 tacataaagc tcgtacgact tgcaagcact aatccgttgg tgacaattta tgaatagaac
      661 aactttgtcc tatgcacgtc gtataaaaaa atgttcagat gcaaaaaaaa gcagcatggt
      721 ccttgccctc gactcgcaca acccgaatga caaacatatc aaaactattg aaaaaatctt
      781 ggatagctta gaagcataca tttgtgctat caaagtcaat ttccatattc ttttatcctt
      841 ttctagagaa caggtgaaag cgcttaatga actagcccat tcttacgggt tgcaatcaat
      901 tgcagatata aaactcaatg acatcggttc aactaacttt gaggctgtct agcgtctcaa
      961 atctatggaa tttgactgca taatagctaa tcccgtaatg ggaaaagtgg gactattctc
     1021 actggtaaaa ttcgcacaca agttgaaaat ggggataatc tcggtgatat acatgagtac
     1081 accctatgct caccagagtt acggtttgaa tgtaatagtc aatgggaaaa aaaatctatg
     1141 ccaaactatg ccattatata agatatttct gcattattca aatataagta aggttgatgg
     1201 attagtggtt ggggctaatc aagctcaaat cataagagca gtatcaacaa tttcgctcat
     1261 cccgatttat tctcctggcg ttggtattca aggtggagat gcaaaaaagg ctatcaaaaa
     1321 tggatctaaa tatataattg ttggacgttc tgtgcttgaa tcatctgatc ctgttaccat
     1381 gataagtaaa atgcgtaata tcagtaatga attatcttca aaagctcaca ttctaagaaa
     1441 tccttgactg attctagaga cttcttagta ttgccatatg aaataaggtc aaacggcttg
     1501 ttaagatcct tccaacaata tcctatatgc tcggaagata acaaaatgtc cgtaacttca
     1561 gttgtgccaa gaaagtatgt tacttttttg gatattgttc ttttattcct cttataagaa
     1621 tatgtaatcg aatatttgaa ccgtgggagg actctgaagc gggatatccc cgtttcctct
     1681 ctcaattctc ttgctgcggc ctgcgtctct gtctcgccgg cttcaatatt tcctttggga
     1741 aaatcccaat gtccagcact gtgaagtaaa aagagaattt tacggctgtg tacatctaaa
     1801 acattagtcg ttagaattat tccagcagat ttctcgtcaa acaaattcct catcaagaac
     1861 ttttatgtta tcctcataat cttaggagtt gatgc
//
LOCUS       DATLQL010000185         1260 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_401093, whole genome shotgun sequence.
ACCESSION   DATLQL010000185 DATLQL010000000
VERSION     DATLQL010000185.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1260)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1260)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1260
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_401093"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..300
                     /locus_tag="VNB68_01910"
     CDS             <1..300
                     /locus_tag="VNB68_01910"
                     /inference="COORDINATES: protein motif:HMM:NF014015.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36139.1"
                     /translation="YMHELLSANFSIVITSVSCLGLDSVWLGCRLDHDKVNNLEKLSS
                     KYGFNLNFEGGEAETIVTDCPLYTKKFVITKSAVTWEGGRGIFEILDFELITKKC"
     gene            294..>1260
                     /locus_tag="VNB68_01915"
     CDS             294..>1260
                     /locus_tag="VNB68_01915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006614 - SRP-dependent cotranslational
                     protein targeting to membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle receptor subunit
                     alpha"
                     /protein_id="HVD36140.1"
                     /translation="MLENLRSGLRSALKKMVGASDVNEELIDALCKDVQRALLQSDVN
                     VRLVIDITKRIKDRALNEQPPKGLSRKDHIVSILYSELVRLLGYSQEERDSIPKPGKS
                     EDVTLPISAGINVFLMLGIQGSGKTTVTSKLARWLTKHGYHVGVIGTDTWRPGALTQL
                     KMNCVKINVDVFGDESSKDPAKIVKDGLEYFMKTGVDIVIIDTAGRHKDEFGLLKEMD
                     SMYKISNPNLVLLVIDGTIGQQAFNQAKTFNETTPVGGIIITKLDGTAKGGGALAASA
                     ATGAKIFFIGNGERIDDLEQFSPTRFVGRLLGMGDIKALLDMARDL"
BASE COUNT          400 a          202 c          302 g          356 t
ORIGIN      
        1 tatatgcatg agctgctctc tgcgaacttt agtatagtaa taactagtgt atcgtgccta
       61 ggtttagatt cagtatggct tggttgccgc ttggaccatg ataaagtgaa taatttggaa
      121 aagttatcat cgaaatatgg attcaatctg aattttgaag gaggcgaagc agaaaccatt
      181 gtgaccgatt gtcctcttta tacaaaaaaa tttgttatta ctaaatctgc ggtcacgtgg
      241 gaaggtggac ggggaatatt tgaaatactg gactttgaat taataactaa gaaatgttag
      301 aaaatctacg atctggtctc cgttctgcgc tcaagaagat ggttggggcc tctgatgtta
      361 atgaagaact aattgatgca ttatgcaaag atgttcagag ggcacttttg caatctgatg
      421 tcaatgtaag attagtgata gacataacca aacgaattaa agatcgtgcc ttgaacgaac
      481 aacctcctaa gggactatct agaaaagatc acatagtttc gatcctgtac tccgaacttg
      541 tcaggttatt gggttactct caagaagaaa gggattcaat tcctaaaccc ggaaaatcag
      601 aggatgtgac cttgccaatt tctgcaggca ttaatgtatt tttaatgctt gggatccagg
      661 gaagtggtaa gacaactgta acttcaaaat tggcgagatg gttaactaag catggatatc
      721 atgttggagt aattggaacc gatacatgga ggccaggagc acttacgcag ctcaagatga
      781 actgcgttaa gatcaatgtg gatgtgtttg gagacgaatc aagtaaagat cccgccaaaa
      841 tagtcaagga tggactggaa tattttatga aaacaggcgt cgatattgta ataatcgata
      901 ctgcgggtag acataaagat gaatttggat tattgaagga aatggatagt atgtacaaga
      961 tctcaaatcc caatttagtg ttgcttgtta tagatggtac tattggtcaa caggcattta
     1021 atcaagctaa aacatttaat gaaacaacac ctgtgggagg catcattatc acaaaacttg
     1081 atggaactgc aaaaggtggc ggagcgctcg ctgcttctgc agctaccggg gccaagatct
     1141 tttttatagg taacggtgag aggattgacg atctggaaca gttcagtccg acacgttttg
     1201 tagggagact tcttggaatg ggtgatatca aagcgctatt agatatggct cgagatctag
//
LOCUS       DATLQL010000186         1026 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1643149, whole genome shotgun sequence.
ACCESSION   DATLQL010000186 DATLQL010000000
VERSION     DATLQL010000186.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1026)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1026)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1026
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1643149"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..617)
                     /locus_tag="VNB68_01920"
     CDS             complement(<1..617)
                     /locus_tag="VNB68_01920"
                     /inference="COORDINATES: protein motif:HMM:NF012703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginase family protein"
                     /protein_id="HVD36141.1"
                     /translation="MKFLYSNASSMFNADIVIIGLPDESKSNAKRKGASEGPDAIRMA
                     SSEYEYFEGDGKVIRICPMAGDIDNKKIFDFGNINRDDLYRLVYDISLAGKIPIVLGG
                     DHSITTLSLKAIHDSIGNVNLLYFDAHPDFVTSTQDYYGSVLSDSAECINFDKSLLIG
                     TRAAEPEEIKNARENKLEIVTPLDILEKGVSSIAQNITSRCGTKS"
BASE COUNT          304 a          206 c          203 g          313 t
ORIGIN      
        1 ttcgactttg tgccacatct agaggttata ttctgagcga tggaacttac acccttttct
       61 agaatgtcta gaggcgttac tatctccaat ttgttttcac gtgcattttt tatctcttca
      121 ggctcggcgg cccttgtccc aattagtagg ctcttatcaa agttaatgca ctctgcagag
      181 tctgaaagaa ctgagccata ataatcttgt gtactggtaa caaaatcggg atgggcgtca
      241 aagtagagaa gatttacatt acctatcgag tcatgaatag cttttaatga aagtgttgtg
      301 atcgaatgat ccccaccaag aacaatggga attttacccg ccaaagaaat atcataaacg
      361 agccgataaa gatcgtccct gttaatgtta ccaaaatcaa aaatcttttt attgtcgatg
      421 tcccctgcca taggacatat ccgtattacc tttccatctc cttcaaaata ttcgtattca
      481 cttgatgcca ttcgtatggc atcgggtcct tcgcttgcac ctttccgctt ggcattggac
      541 ttggattcat ctgggagacc aattatcacg atatctgcgt tgaacatgga gctggcattt
      601 gagtatagaa atttcattag ctaactgata gatttgagaa atggtcctga atttgaagct
      661 tcttttgata actaagaatg aagtaaagga gtccccccct agcttgcgtc aaaaaagagt
      721 aggagattct agcgaatcca ataacaggaa gccgcttatt cgtacgagaa gttagtgatt
      781 ttatcaacag tcatgtagaa tcataacgct tcaaccgaaa aaagcaaggg caagcgaagc
      841 attgcacaag aacgttgaat tcaaatacaa atgtctgcgt gccttgcagg ggggtaccgt
      901 tgttttgttc aaacttaaag tttctcagat aattttacct ctccatactg cagaaaatct
      961 attgttattt actttctgaa tttcaagtca tgtctaccga gttggatgga tcaagattaa
     1021 agacga
//
LOCUS       DATLQL010000187         1139 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_931592, whole genome shotgun sequence.
ACCESSION   DATLQL010000187 DATLQL010000000
VERSION     DATLQL010000187.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1139)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1139)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1139
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_931592"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            288..902
                     /locus_tag="VNB68_01925"
     CDS             288..902
                     /locus_tag="VNB68_01925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36142.1"
                     /translation="MCTVIASQTTFTALVANAETGPIQSIGNNTNPDFQLEQSATNVT
                     SSDLLPYVNRMHGILMSIPSNWTLSTSGLPDYTQIAGFYSPLQNLSDSIPARLSISVM
                     NYQQNVSLKDFTNLTLTSLNRTGQFKVISSDPITLDGRPGYQIILSTLPNLGNPLNFG
                     LMQSWTAVGTKIYQFSYSTESSKFATYLPTVELMLKSLRIHDTR"
BASE COUNT          354 a          235 c          192 g          358 t
ORIGIN      
        1 ttagattatc tcgcggtggg tgcttaaccg aaggtgttga aaataaaaca gatctgttat
       61 tgaagtagta cttgcctggc aaaaagaata tggcgttaaa gaaagagtct gaaggtattt
      121 gattatcatt ggctacggac atagggtaga atttggttgc atccactcca atctgcaaac
      181 tttttcaatc ccataacttg caaaacttaa ttaaacgaac aatttcttct tactcgcgtt
      241 agaaaatgag tttgatggtt agaacatcgt tgctgatttg tttattcgtg tgcacagtca
      301 ttgcttctca gacgaccttt acagcgctag ttgctaatgc ggaaacagga cctattcaat
      361 caattggaaa taacactaac cctgattttc agcttgaaca gtccgctacg aatgttactt
      421 catccgatct acttccatat gtaaaccgaa tgcatggaat attgatgtcc atcccttcaa
      481 actggacctt atctactagt ggactgccag actatactca aatagcaggt ttttattcac
      541 ctcttcaaaa tctttctgac tcaataccgg ctcgcctttc aatttctgtg atgaactatc
      601 aacaaaacgt atcgctcaaa gatttcacaa acctaacgct tacttcatta aacagaacag
      661 gccaatttaa ggtgataagt tcagatccta ttactcttga tggaagacca ggttaccaaa
      721 taattttatc aacgttacca aatttgggaa atccacttaa tttcgggtta atgcaatcat
      781 ggacagcagt aggcacgaag atttatcaat tttcatatag cactgaaagc tcaaaatttg
      841 cgacctatct gccgactgtt gagcttatgc taaaatcctt gaggatacac gatacgagat
      901 aattcttctc tttctattcc agtattctcc atgagtctct cgggagaatg ggtgaaagat
      961 caaatatcca cagtgaacaa tccatatcta taaaccaagt cgagatgacc taactattca
     1021 tttactccgc ttcaaatttg aagttgatct atgtgttccg atttcatatc ctttaaactt
     1081 aatacacatt agatttctga aaaacaacta tatcgctgat ttcaatatct gtttcggcc
//
LOCUS       DATLQL010000188         1254 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1467355, whole genome shotgun sequence.
ACCESSION   DATLQL010000188 DATLQL010000000
VERSION     DATLQL010000188.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1254)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1254)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1254
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1467355"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..696)
                     /locus_tag="VNB68_01930"
     CDS             complement(<1..696)
                     /locus_tag="VNB68_01930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36143.1"
                     /translation="MAISLSGNIASCFVDYTFVVFLLIIGSVVLSAAIIGNATALHEI
                     NNSQACHIITDNNTGFSRKLQFNQALSVRAIVNLSDSNIILKPSMILNSSVFTDRPAD
                     SRFSIELLERGGRILAHYPVDLIVSTARVEEWKDIAYISEAIPFNPCTAKFAIKIDDK
                     ILASQVISPHVPKIGIIKVSNGNDTAGKSELIFPRSSNITIKWEAHDLDKDKLTYLVV
                     YSNDGGLTWPTTIA"
     gene            complement(777..>1254)
                     /locus_tag="VNB68_01935"
     CDS             complement(777..>1254)
                     /locus_tag="VNB68_01935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36144.1"
                     /translation="VASIKVNVGVREHSNDGADLLSVEKVPANQISTSASPVINSNPT
                     VNAGPDRVIYPGTNNVVLKGYAYDPDADPLSYLWKQTAGWTVELRNPNSAEPTFSIPA
                     IVENKVLRFVLTVSDGRGGQDTDDVKIIIKDRVPNRTFQDRAEPLQTFNHTLQFNR"
BASE COUNT          364 a          247 c          247 g          396 t
ORIGIN      
        1 agctattgtc gtaggccaag ttaggcctcc atcgttgcta taaaccacta agtaagttag
       61 cttgtcttta tccaaatcat gtgcttccca tttaatagta atattgcttg atctaggaaa
      121 aattaattca gatttcccag cagtgtcatt accgttacta accttgataa ttccgatctt
      181 tggaacatgt ggcgaaataa cttgtgaggc gagtatttta tcatctatct ttatagcgaa
      241 ctttgcagta caggggttga aaggtattgc ctctgagata taggctatat ctttccattc
      301 ttcaactctt gccgtcgata ctattaagtc aactgggtaa tgagctaata ttcttcctcc
      361 acgctcgagc agctcaattg aaaagcggct gtccgcaggt ctgtctgtaa atactgagga
      421 gttaagaatc atggaaggtt tcagaatgat atttgaatct gagagattaa ctattgccct
      481 aacagaaagc gcttgattaa attgaagttt gcgagaaaag ccagtattat tgtctgtaat
      541 tatgtggcaa gcctgagagt tgttgatctc atgtagggca gttgcatttc caatgatagc
      601 agctgataga acgactgaac caatgattag aagaaatact acaaatgtat aatccacgaa
      661 acagctagcg atgttaccag atagacttat tgccaattat gatgccactt acaaatgatt
      721 gtattaggag tcatatcaaa agaagaatca ggttttagcc ctatttccca agtggactac
      781 ctgttgaatt gtaatgtatg attgaaagtt tggagtggtt cggcccgatc ttgaaaagtc
      841 cgattaggta ccctatcctt aattataatt tttacatcat ctgtatcttg tccacctctt
      901 ccgtcactta cggttagtac gaatctcagt actttgtttt caactatagc tggaatactg
      961 aatgttggtt cagcactgtt tggatttcgt aactcaacgg tccaacctgc agtttgtttc
     1021 cacaaataac ttaatgggtc agcgtcagga tcataagcgt aacccttcaa aactacattg
     1081 ttagtacccg gatatattac acgatctggg cccgcattaa ccgttggatt actattaatc
     1141 acaggtgaag cgcttgtaga gatttggtta gcagggactt tctctacaga caaaagatct
     1201 gcaccatcgt tagaatgctc tcttactccc acatttacct tgatcgaagc aacc
//
LOCUS       DATLQL010000189         1065 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2355167, whole genome shotgun sequence.
ACCESSION   DATLQL010000189 DATLQL010000000
VERSION     DATLQL010000189.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1065)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1065)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1065
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2355167"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..233)
                     /locus_tag="VNB68_01940"
     CDS             complement(<1..233)
                     /locus_tag="VNB68_01940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HVD36145.1"
                     /translation="MNGEDEYLGKLYQRFPINVARGKNAKVWDVSGKEYIDCMAGYGV
                     ALVGHCNDRVVRAIKNQVENLIVCHISVYNDTRL"
     gene            complement(230..>1065)
                     /locus_tag="VNB68_01945"
     CDS             complement(230..>1065)
                     /locus_tag="VNB68_01945"
                     /inference="COORDINATES: protein motif:HMM:NF010662.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="[LysW]-aminoadipate/[LysW]-glutamate kinase"
                     /protein_id="HVD36146.1"
                     /translation="RTKIYSSDTSMIVLKIGGSIVDGLHSTTFQDIKKISENNKLILV
                     HGGGKEVTNTANKLGKEQRFIISPSGVKSRYTDKETAEIYTMVMSGKINKAIVGMLLR
                     TGIKSVGISGIDGGILKAERKKKLIIINEKGRKMVIDGGYTGRINSVDPSLVNILIGK
                     GYVPVISPIALSNEFDFLNVDGDRAAAYIAGGVKAQSVIFITNVNGLILDDKLVTNMT
                     YEQAKTVISRIGFGMQKKVLACTEALEMGVKEAVIASGQTENPVSASMAHYNCTVISP
                     N"
BASE COUNT          287 a          252 c          145 g          381 t
ORIGIN      
        1 agtctagtat cattgtaaac agagatatga cacacaataa gattttctac ttgattcttt
       61 atagcgcgta caactctgtc attgcaatgt cctacaagtg cgactccata acctgccatg
      121 cagtcgatgt attctttacc agaaacatcc catacttttg catttttacc ccgtgcaaca
      181 ttaattggga atctctgata taatttgcca aggtattcgt cttctccatt caattaggac
      241 tgatcaccgt acaattataa tgtgccattg atgcagaaac aggattctct gtttgtcccg
      301 atgcaattac tgcttccttc actcccattt ccaatgcctc ggtgcatgca aggactttct
      361 tttgcatccc aaaacctatc cttgatatca ctgtctttgc ttgctcatac gtcatatttg
      421 taactaattt atcatctaat atcaagccat ttacgtttgt tataaaaatg actgactgcg
      481 cttttactcc acccgcaata tatgccgctg ctctatctcc atccacgttt agaaaatcaa
      541 attcattact taatgcaata ggtgaaataa caggtacata tccttttcca attaatatat
      601 taactaaaga tggatcgact gaatttattc ttccagtata tcctccatcg atcaccattt
      661 ttcttccttt ttcattaatt atgattagtt tcttttttct ctctgctttc aaaatacctc
      721 cgtcgatccc cgaaatccca acactcttaa taccggtacg taaaagcatg cctactattg
      781 ccttatttat cttgccagac ataaccatcg tatagatttc agcagtttcc ttatctgtat
      841 acctgctctt tacaccacta ggagatatta tgaacctttg ctcctttcca agtttatttg
      901 ctgtgttggt tacctctttt ccaccgccat gtacaagaat caacttgttg ttttcagata
      961 tttttttgat atcttgaaag gtagttgaat gcaagccatc cactatactc ccaccaatct
     1021 tgagtactat catactggtg tcagaggagt atattttagt ccttc
//
LOCUS       DATLQL010000190         1029 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_401819, whole genome shotgun sequence.
ACCESSION   DATLQL010000190 DATLQL010000000
VERSION     DATLQL010000190.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1029)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1029)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1029
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_401819"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..442
                     /locus_tag="VNB68_01950"
     CDS             <1..442
                     /locus_tag="VNB68_01950"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HVD36147.1"
                     /translation="TQHGSLLAKKQLIQQHISKIVIGMESSKWLTYRAAFARQKLHDY
                     VEQFKLEQEGWQSELNRSNSTYSQLRKEADRLTTIAKFHATNMAFDCASRSLQVFGSF
                     GYQKTSRVSKHFLDSRATMIYEGANEVLELKIASEVLGDSFKAY"
     gene            complement(477..>1029)
                     /locus_tag="VNB68_01955"
     CDS             complement(477..>1029)
                     /locus_tag="VNB68_01955"
                     /inference="COORDINATES: protein motif:HMM:NF012428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HVD36148.1"
                     /translation="LADKFKVPLIFDEVQSGMGRTGKWWAYQHYGVEPDIMTVAKALQ
                     VGATVYDKEYEPDESGVLSSTWGGGDRIDMAVGTKMIEIIVKDGLLSNSQRIGNMLLK
                     NFVDIIGKGLIDVRGIGLMIGLEFDTKTVRDYVVNRLFKKGLLVLPAGIKSIRIMPPL
                     IINEEEAAKGVSLICDTINRYHK"
BASE COUNT          315 a          230 c          169 g          315 t
ORIGIN      
        1 aacacaacat ggatctctcc tagcaaagaa acaattaatt caacaacaca tctcaaagat
       61 tgtcataggt atggaaagct cgaaatggct tacctataga gccgcatttg ctagacagaa
      121 attacatgat tacgttgaac aattcaaatt ggaacaagaa ggctggcaat cagaactaaa
      181 tcggagtaac agtacttact cacaattaag aaaggaagct gacaggctaa ctactattgc
      241 caaatttcat gccacaaaca tggcatttga ttgtgcatct agatcactac aagtgtttgg
      301 atcatttggt taccagaaaa cctcacgtgt ctcaaaacac ttccttgatt ctcgcgcaac
      361 aatgatctat gaaggagcta acgaagtatt agaactcaaa attgcgtctg aggtattggg
      421 agatagtttc aaggcatact aataagccgt atgcctggga tttgttaata tcctttctat
      481 ttatgatacc tgtttatcgt atcgcatatt aaagaaacac ctttcgcagc ttcctcctca
      541 tttatgatta gtggtggcat tattctaatt gattttattc cggctggaag aacgaggagt
      601 cctttcttaa acaatcggtt tacgacgtaa tctcttaccg tttttgtgtc aaattcgagc
      661 ccaatcatta agccaatccc tcttacatca atgagtcctt taccaataat atcgacaaaa
      721 ttctttagca acatgttgcc aatcctttgg gaattagata ataaaccatc cttgacaata
      781 atctctatca tctttgtacc aactgccatg tcaattctat ctccgcctcc ccatgtactt
      841 gaaagaactc cagattcatc aggttcatat tctttatcgt ataccgtggc tcctacttgc
      901 aaggcttttg caacagtcat tatgtcgggt tccactccat aatgttgata ggcccaccat
      961 tttccagtcc ttcccattcc actttggacc tcgtcaaaga tcagtggaac tttaaattta
     1021 tctgccaac
//
LOCUS       DATLQL010000191         1866 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1468165, whole genome shotgun sequence.
ACCESSION   DATLQL010000191 DATLQL010000000
VERSION     DATLQL010000191.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1866)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1866)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1866
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1468165"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..610
                     /locus_tag="VNB68_01960"
     CDS             <1..610
                     /locus_tag="VNB68_01960"
                     /inference="COORDINATES: protein motif:HMM:NF015438.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HVD36149.1"
                     /translation="TFRGELVTTGIFKEPIHHRTKLRKLNLDGDKQADLTVHGGVDKA
                     VYSYPEEHYRFWQKELPDMYLSWGMFGENFTTEGLFEDNVNIGDQFQIGTARVIATQP
                     RMPCYKLGVKFGRMDIIKRFLGSGLTGIYFKVLQEGEVGAGDVIELIRRDDNNVTVKD
                     VVRIYTVDKDDVQTMERAIKVKDLPDGWRSHFIEQLDQTKKW"
     gene            709..1173
                     /locus_tag="VNB68_01965"
                     /pseudo
     CDS             709..1173
                     /locus_tag="VNB68_01965"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
     gene            1180..1653
                     /locus_tag="VNB68_01970"
     CDS             1180..1653
                     /locus_tag="VNB68_01970"
                     /inference="COORDINATES: protein motif:HMM:NF018201.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36150.1"
                     /translation="MFARDNGFTVRFIEFMPLDGTGIWKHDLVFSKKEMIERINLNLG
                     EIVKHHNSDNQPEPAMLYSFVDGKGIMGFIPSITEPFCGNCDRARITSDGRLLTCLFE
                     NPGHNLKGFLRSGATDEVIERYIVDSMSNKPEGIIKMIKTKSLKPTLNLMHTIGG"
     gene            1661..>1866
                     /locus_tag="VNB68_01975"
     CDS             1661..>1866
                     /locus_tag="VNB68_01975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36151.1"
                     /translation="MKATTDDKANDLIKVKLFGISTEIVGKSEMTLLVPVGTTVGNLK
                     KKITKMYPSLDVANVPFVFAVNHRV"
BASE COUNT          636 a          283 c          429 g          518 t
ORIGIN      
        1 caccttcaga ggtgaattgg ttaccacagg aatattcaag gaaccaatac atcatcggac
       61 aaaactaagg aaattgaatc ttgatggaga taagcaagct gacctaacag tacatggcgg
      121 cgtggacaaa gcagtatatt cctatccaga agaacattat agattctggc aaaaggaact
      181 gcctgatatg tatttgtctt ggggtatgtt tggtgaaaat tttaccactg aaggactgtt
      241 tgaagataat gttaacattg gtgatcaatt ccagattgga acagcaagag ttatagcaac
      301 tcaaccgagg atgccgtgct acaaacttgg agtaaaattt ggcagaatgg acataattaa
      361 aaggtttttg ggcagcggac ttacagggat ttatttcaag gtattacaag aaggtgaagt
      421 aggtgcaggc gatgtgatcg aacttattag aagagatgat aacaatgtga ctgtaaagga
      481 tgttgtacgc atatatacgg tcgataaaga tgacgtgcag accatggagc gcgcaataaa
      541 ggttaaggat ttaccagatg gttggagatc tcatttcatc gagcaattgg atcaaactaa
      601 aaagtggtag tgtgagtggc gaagttgacc tgttaaaagg agacaagtta cgtggctagc
      661 aagctcgtag ataaatatgg tagaattgcc aaaaagttaa ggatctcggt gacagataga
      721 tgtaatatga gatgtatcta ttgcatgcca acgaacaatg tggaatggct agacgatact
      781 gaagttctct cttttaatga aatagttagg ctcgcgtcaa tttttgccga tttaggaatt
      841 gaaaaaatac gaataactgg aggtgagcct ctagtaagac catcattaga aaatttgatt
      901 aattctattt caatgatccc ctgaatcaaa ggtataggcc ttaccaccaa tgggctacta
      961 cttgcagacc aagtaaagca gttgtcatct gcgggacttt caagcgtgaa tgtcagtcta
     1021 gattcattca aggaagatag attcaaaatg atgaccggag tgaaaggagt aaataaagtc
     1081 attagttcta tacataatgc taatgatgca ggactggacg taaagctaaa caccgtcgtc
     1141 attaggggat ggaatgatga tgaaatcgtt gattttgctt tgttcgcaag agataatggc
     1201 tttacagtac ggtttataga atttatgcct cttgatggta ctgggatttg gaaacacgat
     1261 ctcgttttta gtaagaaaga gatgatcgaa agaattaact tgaatttggg agaaattgtc
     1321 aagcatcata atagcgataa tcaaccagag ccagcaatgc tttattcctt tgtagacggc
     1381 aaaggtatca tggggtttat cccttcaatt acagaaccat tttgcggtaa ttgtgatcga
     1441 gcaagaataa cctcagatgg tagacttctc acttgtcttt ttgaaaatcc aggccacaat
     1501 ttgaaagggt ttttgcgaag tggagcaaca gatgaagtta ttgaacgcta catcgtagat
     1561 agtatgagta acaaacctga aggtattatt aagatgataa aaactaaaag tctaaaacct
     1621 acactaaatt tgatgcacac aataggggga tagcataatc atgaaagcta ctactgatga
     1681 taaagcaaat gatttgataa aagtaaaatt atttggcatc tcaacagaaa ttgttggtaa
     1741 aagcgagatg actttactgg tgcctgttgg aaccacggta ggaaatttaa agaagaaaat
     1801 aactaaaatg tatccttcac ttgatgtggc taatgtccca tttgtatttg ctgtcaatca
     1861 cagggt
//
LOCUS       DATLQL010000192         3931 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_46202, whole genome shotgun sequence.
ACCESSION   DATLQL010000192 DATLQL010000000
VERSION     DATLQL010000192.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3931)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3931)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3931
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_46202"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            59..1534
                     /locus_tag="VNB68_01980"
     CDS             59..1534
                     /locus_tag="VNB68_01980"
                     /EC_number="6.5.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008452 - RNA ligase activity [Evidence
                     IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RtcB family protein"
                     /protein_id="HVD36152.1"
                     /translation="MSGLLTRSGNLQVRKVGDFEYRIDKDVSKGMNVPVTIYANDNLI
                     SKMVTDRTIDQASNVATLPGVTKHVVVLPDGHEGYGFPVGGVAAMDLEDGVISPGGVG
                     YDINCGVRLIRTSITERELRPKLKDIVNELFTAIPAGVGSASRTKLTRSDLDDLLVEG
                     VPWAVERGYGWQSDIEVCEETGKMEGADPGSVSDTARKRGAPQLGTLGSGNHFLEIQK
                     VDKIFDEIAAKKMGIEGEGQIAILIHCGSRGFGHQVCSDYLRISEGVLRKKNIQLVDR
                     ELACVPNNSSEGESYRKAMYSALNFAWCNRQMITHWTRKSFEKILGLTEGQLDMKLIY
                     DVAHNIAKVERHKVDGEGMRDLVIHRKGATRAFPAGVEQIPEKYRDVGQPVIIPGSMG
                     TASWVLLGNVRSLDLSFGSTAHGAGRAMSRTAARKNYTVENVKQQLESKGIYIKSLSK
                     DGVVEETPEAYKDVDAVVEVSHRLGIATKVARFVPVGVIKG"
     gene            1534..1953
                     /locus_tag="VNB68_01985"
     CDS             1534..1953
                     /locus_tag="VNB68_01985"
                     /inference="COORDINATES: protein motif:HMM:NF014086.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HVD36153.1"
                     /translation="MSGGDDPEIGGDDPEIRIIKARKMKQLREHAATLEKLKENSESR
                     TSTKKTDREILLSYLYDRGDEVLKLAEAQYPSQTRIIVSKIAQLIREGDISNRISGGE
                     LLALFRYAGILIRVNTSIKIEDHGKYISFSEKLKQEQ"
     gene            2038..3102
                     /locus_tag="VNB68_01990"
     CDS             2038..3102
                     /locus_tag="VNB68_01990"
                     /inference="COORDINATES: protein motif:HMM:NF012335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HVD36154.1"
                     /translation="MLPKENRAAVFNGPRSITMERLPLAQSNDGSAILKILSCAVCGY
                     DVRVYNEGHRKVHPPIILGHEICAETIHPISNLGNGDLISEGTRVAISPLVPCLKCYY
                     CASERYNLCNNLQEIGSSVNGGFAEYIKIPLNNIIIDGIVPIPDNITNEEAALIEPLA
                     CCLNAHLRFKSSHTDRSIIIGDGPIGLIHLQISKLYGMKTIVIGKIDYRMDQAKQLGA
                     DIVLLNSNIEDSVRSIMDSTNNIGANMIIVATSNPDALDLALRIASKDSIISLFAGMP
                     KTKILSLDPNWLHYNEISISGSFSSTPILMRKAISMVSESKINLKKIISYTYRLKNIE
                     DAFFATEKYSSFRSIIHPSE"
     gene            3591..>3931
                     /locus_tag="VNB68_01995"
     CDS             3591..>3931
                     /locus_tag="VNB68_01995"
                     /inference="COORDINATES: protein motif:HMM:NF027503.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-coenzyme A synthetase N-terminal
                     domain-containing protein"
                     /protein_id="HVD36155.1"
                     /translation="MELTNKEKYCQSNPEKFASSNISTFMKKHGFKKYQDLIKKSVEN
                     IGWYWDSVNEDLSLKWFEKYNAVFDSGEGIERTKWFIDGKCNIISNAIDRHLNEDPEK
                     IAFIFENEKGQT"
BASE COUNT         1402 a          626 c          866 g         1037 t
ORIGIN      
        1 actttgaacg aaatcgtgtg aaaaggttat aatgactgct tgataaaatg accaacgcat
       61 gagtgggtta ttaaccagaa gcggaaacct acaagttagg aaggtaggag attttgaata
      121 tagaatagat aaagatgttt caaagggcat gaatgtccct gttacaattt atgctaatga
      181 caatttaatc tcaaagatgg ttacggatag aacaatagat caggcatcta atgttgcaac
      241 attaccggga gtgacaaaac atgttgtagt gttgcctgat ggacacgagg gatatggttt
      301 cccagtcgga ggtgttgctg caatggactt ggaagatgga gtaattagcc cgggtggtgt
      361 gggatatgat attaattgtg gtgtccggct aataagaacc agcattaccg aaagagaact
      421 tagacctaag ctgaaggata ttgttaacga gttattcact gctatacctg cgggagtagg
      481 aagtgcaagt cgcaccaaac taacaagatc tgacttggac gacttacttg tggaaggtgt
      541 tccgtgggca gtagaaagag gatatggatg gcaatcggat attgaagtat gcgaagaaac
      601 aggaaaaatg gagggtgcag atccaggatc tgtctccgat acagcaagga agagaggtgc
      661 accacaacta ggaacgctgg gatccggtaa ccatttcctg gaaatccaaa aagttgacaa
      721 aatatttgac gaaattgcgg caaagaaaat ggggatagaa ggagaaggac aaatagccat
      781 tttaattcat tgtggttcac ggggatttgg acatcaagta tgtagtgatt atttgcgcat
      841 ttctgaagga gtattgcgga aaaaaaatat acagcttgtt gatagagagc ttgcgtgcgt
      901 gcccaataat tcatcagaag gagaaagtta tagaaaagcg atgtactcgg ctttgaactt
      961 tgcatggtgt aatagacaaa tgatcactca ctggactagg aaatcttttg aaaagatatt
     1021 gggcttgaca gaagggcagc ttgatatgaa actaatatac gatgtcgcac ataacattgc
     1081 caaggtcgaa aggcataaag tagatggaga aggaatgcgc gaccttgtga tacatagaaa
     1141 gggcgcaaca agagcttttc ctgcaggcgt agagcagatt ccagaaaaat acagggatgt
     1201 aggacaacca gtaattattc ctggatcaat gggaaccgca agctgggtgc tattaggtaa
     1261 tgtccggtca cttgacttga gttttggttc aactgcacat ggagccggta gggcaatgtc
     1321 tagaacggct gctaggaaaa attacacggt cgagaatgtt aaacaacaac tagagtccaa
     1381 agggatctat atcaaatcat taagcaagga tggagtcgta gaagagactc ctgaggcata
     1441 taaggatgta gacgcggtag tagaagtttc tcatcgtctc ggaatcgcta cgaaagtagc
     1501 acgttttgtt cctgtcgggg tgatcaaggg ataatgagcg gaggcgacga tcctgaaata
     1561 ggaggcgacg atcctgaaat acggattatc aaagcaagaa agatgaaaca attacgggag
     1621 cacgcagcca cattagagaa actgaaggaa aatagtgaaa gtaggacatc gactaaaaaa
     1681 acagacagag aaattttact atcgtatctc tatgatcgag gtgacgaagt attgaaatta
     1741 gcagaagcac aatatccttc ccaaactagg atcattgtaa gtaaaatagc ccaactgatt
     1801 agagaaggag atatttcaaa ccgaatatct ggaggtgaac tgctggcttt gttccgttat
     1861 gcaggaattc ttattagagt taatacaagt atcaagatag aagatcatgg caaatatatc
     1921 tcattttcag aaaaactgaa gcaggagcaa taacgttatt actctatgcc aaagttacaa
     1981 gactactaga agggaagaga aacgataaga agatttaaga atatctatcg gtgaaaaatg
     2041 cttccgaaag aaaatagagc agcagttttt aacgggccaa gatctatcac catggaaaga
     2101 cttccattag cgcagtcaaa cgatggaagt gcaatactaa aaatattatc ttgtgcggtg
     2161 tgcggttatg atgtaagagt ttacaacgaa ggccatcgta aagttcatcc tccaatcata
     2221 ctagggcacg aaatttgtgc tgaaacaata catccaatta gtaatctagg aaatggcgat
     2281 ttaatatcgg agggaacccg agtagccata tcgccacttg ttccttgtct taagtgttac
     2341 tactgcgcca gcgaacgata caacctgtgt aataatcttc aagagattgg ttcgagcgtt
     2401 aatggaggtt ttgcagagta catcaaaatt cctttgaaca atatcataat tgatggtatt
     2461 gttccgatac cagataatat caccaatgag gaggctgctt taatagaacc tttagcatgt
     2521 tgtttaaatg cccatttaag attcaaatcc tcccacactg atcgttcaat aataatagga
     2581 gacggtccga taggtctgat tcacttgcag atttccaaat tatatggcat gaagactata
     2641 gtgataggta aaatagacta tagaatggat caagcaaaac aactaggcgc ggacatagta
     2701 ctcttgaaca gtaacataga agattcagtg cgtagtatca tggattcaac caacaatatc
     2761 ggagcaaaca tgatcatagt tgctaccagt aatccagatg cattagatct tgctttaaga
     2821 atagccagta aggactctat tataagctta tttgcaggta tgccaaaaac caaaattctt
     2881 tcgctagatc ctaactggtt acactataac gaaatatcta tatcaggaag ttttagttcc
     2941 acacctattt taatgagaaa agcaattagt atggttagtg aaagtaaaat aaacttgaaa
     3001 aaaatcatta gctatactta taggttaaaa aacatagaag acgcattctt tgccaccgaa
     3061 aaatactcta gcttcagatc aattattcat ccttctgagt agaatatcga taaaaaaaag
     3121 acgatatttt aaactgatgg cctaattact ttaaactagt ctgtcctgct taaactaatg
     3181 taaaacctgc ccaaggctgt cagaatgaag tttcagtacc tcattcatca ttcgcctaaa
     3241 tcctttttta gaaatgtgtg attcttgatt tggcatggat gtaacgtaga aataataagg
     3301 tatggtgatt tgacatctcg attaaatttg atgctctcaa ccttatttaa ttgattgaat
     3361 agcaaatttc atcaatcgag tcttcgtcca acaatttcaa agaatttagt atgacatttg
     3421 agtatcagaa gcaaaaccta tagagcagga agaagccact ataagtcagt acactatata
     3481 ctatggaaac cagagttgtg gaaaaaatta ctaatttgag atgcatatag atatgaaatt
     3541 ttagataacc ataatatcat tagcgtattg aaaagcatgg agaatatata ttggaattaa
     3601 caaacaaaga aaaatattgt cagtctaatc cagagaaatt tgcgagtagt aatataagca
     3661 cctttatgaa aaaacatgga tttaagaaat accaggatct aataaaaaaa tctgtagaaa
     3721 atattggatg gtattgggat tccgttaatg aggatctttc cctaaaatgg tttgaaaaat
     3781 ataatgctgt atttgattca ggagaaggaa tagaaaggac aaaatggttt attgacggaa
     3841 aatgtaacat aataagtaat gcgattgata gacacctaaa tgaggacccc gaaaaaatag
     3901 catttatctt tgaaaacgaa aaaggacaaa c
//
LOCUS       DATLQL010000193         1042 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_932941, whole genome shotgun sequence.
ACCESSION   DATLQL010000193 DATLQL010000000
VERSION     DATLQL010000193.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1042)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1042)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1042
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_932941"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            5..865
                     /locus_tag="VNB68_02000"
     CDS             5..865
                     /locus_tag="VNB68_02000"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HVD36156.1"
                     /translation="MASSSSHSANHKVAVITGSSTGIGYETSLILARNGFLTYATMRN
                     LNKSENIKVVATKENLPIQIKQLDVTDDVSVTNAIQAISSEAGQIDVLVNNAGYGLNG
                     AFEDLAMDEIKAQYETNVFGLIRTIQAVLPIMRRQKSGTIVNISSGAGRFGFPGSSAY
                     VSTKFAVEGLSESMSYELEPFGIKVVIVEPGVIRTNFFDGLVVAKKSQDPNSPYSQIM
                     QKTAAGFEEMMKNASSPDLVAKVVLNAIRDENPSLRYLAGSDVETWLGGKRKMADEEL
                     YKMMKQNLMM"
BASE COUNT          358 a          176 c          220 g          288 t
ORIGIN      
        1 atagatggct tcttcttctt ctcactcagc caaccacaag gtagccgtta ttacaggaag
       61 ctcaactgga ataggatatg aaacttctct aatcttggca aggaatggtt ttcttacata
      121 tgccacaatg aggaacctta acaaaagtga aaatataaaa gtggtcgcaa ctaaagaaaa
      181 cttgccaatc caaattaagc aacttgatgt taccgatgat gtgtcggtca cgaatgcgat
      241 acaagcaata tcgtctgagg cagggcaaat agatgtcctt gtaaataacg caggttatgg
      301 actaaacgga gcctttgagg atcttgcgat ggatgaaata aaagcacaat atgaaaccaa
      361 tgtgtttgga ttgataagaa caattcaagc agttcttcca attatgagaa gacaaaaatc
      421 tggaactatc gtaaacatta gctctggcgc tggaagattt ggttttcctg gcagttctgc
      481 ctacgttagt acaaaatttg cagttgaagg actaagtgaa tctatgtcat atgaattaga
      541 gccatttggt atcaaagtgg ttatagtgga accaggagtt attagaacaa actttttcga
      601 tggtttggtt gttgcgaaaa aatctcaaga tccaaattct ccatattcgc aaataatgca
      661 aaaaacagct gctggctttg aagaaatgat gaaaaatgct tcttctcctg accttgtagc
      721 aaaggtagtt cttaatgcca tcagagatga aaatcccagt cttaggtatt tagccggaag
      781 tgatgtagaa acatggctag ggggtaaaag aaagatggcc gatgaagagc tctataaaat
      841 gatgaagcaa aatctgatga tgtagagaat tgaaagaaag aagaaaaaac accttgtctt
      901 tgggcggaag aatatctttt ccactaaact cagcttacca cgcaaccaaa tttactcttg
      961 aaggttatcc gaatctatac aacatgaatt agaatcgttt ggaattaaga ttatacttat
     1021 agagcctgca gctgttggtt ct
//
LOCUS       DATLQL010000194         1513 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_933129, whole genome shotgun sequence.
ACCESSION   DATLQL010000194 DATLQL010000000
VERSION     DATLQL010000194.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1513)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1513)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1513
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_933129"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1446
                     /locus_tag="VNB68_02005"
     CDS             <1..1446
                     /locus_tag="VNB68_02005"
                     /inference="COORDINATES: protein motif:HMM:NF019869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HVD36157.1"
                     /translation="WDPDWIVESLSDSVIYMIYYILSKYLTNGKDETYSESLVRSDNL
                     SDEFFDYVLLGNGNPEEIAKLSRISPNLLNKIRTDFLYFYPVDSRHSGRDLVPNHLSF
                     FIFNHVAIFGKEFWPKQIVINGSVLMQGKKMSKSLGNIIPLRTAVKEYGADAIRLAML
                     STSELLQDADFSFDLVKGIRSKLHEIYKTTLDRATSLRDPMTSGIKEGVFQMELEEKW
                     LLSRLQHAISETTRSLERLRVRESLQIVLYFMDRDLQWYKKRKKAKKRDPLKSKAFDE
                     FLSVRVRLLAPFAPFISEEIWEIIDSKGFITSVAWPRVDNRKIDATLEENEDLIENTI
                     LDIQKITKVTKIVPKRILIYTASKHKWILYKKILSAMQLESQVNFGDLMKVLINDKEV
                     SDIAKSDPGLIKKIIADILSYSSEVRKRKLGLESFDEGIPLRDALTLIMEQIGFEEIP
                     IDIVSEDQGDRYDPKGKSRSARPFKPALYLE"
BASE COUNT          512 a          244 c          309 g          448 t
ORIGIN      
        1 tgggatcctg actggatagt agaaagtctt tccgattctg tgatttacat gatatactac
       61 atactatcca aatatcttac taatggtaaa gatgaaactt attctgaatc gctggtgcgt
      121 tcagataatc ttagtgatga attttttgat tatgttttgt tgggaaatgg caatcccgag
      181 gaaatcgcaa agctatcaag aatttctccg aatctcctga ataaaattag aactgatttc
      241 ctatatttct atccggtaga ttcccgacat tctggtcggg atctagtacc caatcatctt
      301 tcatttttta tcttcaatca cgttgctatc tttggaaaag agttttggcc aaagcaaatt
      361 gtaataaacg gatctgtgct tatgcaagga aaaaaaatgt ccaaatcgtt aggaaatata
      421 atacctcttc gaacagctgt taaagaatac ggagctgatg ctattcgtct tgctatgcta
      481 agcacctcag agcttcttca agatgcagat ttttcttttg atttagtcaa gggaattaga
      541 agcaagttac atgagatata caaaaccacg ctagaccgtg caacatcact tcgagatcct
      601 atgaccagtg ggatcaaaga gggtgtgttt caaatggaat tggaagagaa atggctgcta
      661 agcagattgc aacatgctat ttctgaaaca actcggtctc ttgaaagatt gcgagtcaga
      721 gaatcattac aaattgtatt atattttatg gatagggatc tacaatggta caagaaaaga
      781 aaaaaggcaa agaaaaggga tccattaaag agtaaggctt ttgacgaatt tttgagtgtt
      841 cgagtcagat tacttgcacc tttcgctcca ttcatcagtg aagagatttg ggagataatc
      901 gatagtaaag gtttcataac ttctgttgcc tggccccggg tagacaacag aaagattgat
      961 gcaacactcg aagaaaatga agatctcatt gaaaatacga tacttgatat tcaaaaaatt
     1021 acaaaagtga caaaaattgt ccccaagaga attttaatct atactgcatc aaaacacaag
     1081 tggattcttt acaagaagat cctaagcgcg atgcaactag aatcacaggt taattttggc
     1141 gatttgatga aagtattgat caacgataaa gaggtaagtg atattgctaa gtctgatcca
     1201 ggactgatta agaagattat tgctgacata ctttcctatt cgagtgaagt aagaaaacga
     1261 aagttaggac ttgaatcttt tgatgaagga ataccgttga gggatgcgct aacattgatt
     1321 atggagcaaa taggttttga ggaaattcca atcgatatag tttctgaaga tcaaggtgat
     1381 aggtacgatc caaagggcaa gtccagaagt gcaaggccat ttaagcctgc cctttacttg
     1441 gaatgaacat attgcataaa agtatgattt agctttgaat ctgtcaacat gatactttta
     1501 agataacata gat
//
LOCUS       DATLQL010000195         1104 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_224368, whole genome shotgun sequence.
ACCESSION   DATLQL010000195 DATLQL010000000
VERSION     DATLQL010000195.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1104)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1104)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1104
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_224368"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(207..281)
                     /locus_tag="VNB68_02010"
     tRNA            complement(207..281)
                     /locus_tag="VNB68_02010"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(244..246),aa:Ile,seq:cat)
     gene            complement(457..>1104)
                     /locus_tag="VNB68_02015"
     CDS             complement(457..>1104)
                     /locus_tag="VNB68_02015"
                     /inference="COORDINATES: protein motif:HMM:NF015057.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing redox enzyme family protein"
                     /protein_id="HVD36158.1"
                     /translation="LVELIDLEIQNRSLLKHPFYQKWSNGELTLDHLQGYSKEYSQLV
                     NAIPKMVENVGMHTTDKKTHFAIVENQKEESEHIELWAKFASSLGVSKNILLRYGGAI
                     DTNLAISKLINLTSGSFEEAICAMYAYEMELPKISRSKIDGLKGFFNITGTDATEYFK
                     THEEVDVRHAELWRSLIGDIPKSKQDIALKAAISSLEAQNDLLDAVYSQYVTPNS"
BASE COUNT          313 a          228 c          198 g          365 t
ORIGIN      
        1 atctcctttc gctttattta ggaattgtga tgcttgttgg gataaggtgc ccttaaaacc
       61 aacaaagtcg agatacacct taagtctagc aggatattgt ctcctagatt ccggtgccca
      121 taaaccatac atgaaatttg ttattgcatc gaatgtccaa caagatctta tatgaaaggg
      181 ccctagataa agggtcactt atggtttggg cccaagggga ttcgaacccc tgaccgaccg
      241 gttatgagcc ggtcgctcta accaggctga gctatgggcc ctctctggga actcgtcatt
      301 taagtacgta taaaggtttt gaacaaatga atcagaatct ctgcatggat attaaaaaat
      361 taagttaaga caccctcatc atttttcctg ttccaaattc cttgagcgaa atataatcta
      421 gcgtgagtaa cctaattcac aaataacttg attcgactag ctgtttggtg taacatactg
      481 gctataaact gcatcaagaa gatcgttttg tgcttcgagt gaactaatag cagcttttaa
      541 ggcaatatcc tgcttgcttt tcggaatgtc tccgatcaga cttctccata gctctgcgtg
      601 acgtacgtct acttcttcat gagtcttgaa atactctgta gcatcagtac cagttatgtt
      661 aaaaaatcct tttaacccat ctattttgga cctactaatc tttggcaatt ccatttcgta
      721 tgcatacatg gcacatatgg cttcttcaaa tgatcccgat gttaggttaa ttaatttaga
      781 tatagccaag ttggtatcaa tagctcctcc atatcttaat aaaatattct ttgacactcc
      841 tagggagctt gcaaatttag cccataattc gatatgttct gattcttcct tctgattttc
      901 tactatagca aaatgtgttt ttttatctgt ggtatgcatg ccgacgttct ctaccatttt
      961 tggaattgca tttactaatt gagaatactc tttagaatac ccctgtaaat gatcaagagt
     1021 gagttcacca ttagaccact tctgataaaa gggatgtttc aagagacttc tattttgtat
     1081 ctccaagtca atcagttcca caag
//
LOCUS       DATLQL010000196         3543 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_403440, whole genome shotgun sequence.
ACCESSION   DATLQL010000196 DATLQL010000000
VERSION     DATLQL010000196.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3543)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3543)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3543
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_403440"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            240..704
                     /locus_tag="VNB68_02020"
     CDS             240..704
                     /locus_tag="VNB68_02020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36159.1"
                     /translation="MVRIEATCSLEGFRKYIIFSTCKSFIPESYLQDFEVFPEREEGP
                     GAIYIEAADKVTLKKMREITFVNAKEILGIIYSSKSGNTQLRWRQTRRKTGKVSGNAS
                     PNALVNLVESGVITQEWTEEYLKSSQVKKDETKSSDGAGSKKVETAEQELPE"
     gene            795..1886
                     /locus_tag="VNB68_02025"
     CDS             795..1886
                     /locus_tag="VNB68_02025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mRNA surveillance protein pelota"
                     /protein_id="HVD36160.1"
                     /translation="MIIREAKGSSGKAQIIIPQDPDDLFTLRRIIDIEDTLIADTTRV
                     IKQVKEYSRPDKGERIRVRILIKVQTVSFDGSVGRLRVGGVIINTDNELVPKGQHHSV
                     AISVGDMVTLDKNRLWKESELEIVNKSIENSTFILVAIDTQEAAVALVTGTHLKILPN
                     IYSGQSGKRYSGSKKLNPNIETFFGEVVAAVQTILTSNITNQNVIIFGPGETKRRFHN
                     FFSNQMENSGSNKVRTKIIEGIDVAGEDGIHVSLRSDSLREVMKDTKLGTVSTVLDQV
                     FYLVSKGEPKFAIGMKEVNQASKLKAIQYLLYSDTVFQNATEEEIVLLLNTTEALGAK
                     AYGMDSSTDIGLRISSLGGIVALLRFAIR"
     gene            complement(1928..2299)
                     /gene="cutA"
                     /locus_tag="VNB68_02030"
     CDS             complement(1928..2299)
                     /gene="cutA"
                     /locus_tag="VNB68_02030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_process: GO:0010038 - response to metal ion [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="divalent-cation tolerance protein CutA"
                     /protein_id="HVD36161.1"
                     /translation="MGGSKTDSQEHSENSGLVSGVIVLSTFPSEDLAKKVAQGLLERK
                     LCACVNIMKVSSIYSWKGKIKDEQEFLCFFKTTTTKLRQLKEEIRKVHPYEVPEIVEL
                     EMKSASSDYLSWMVDATLSSP"
     gene            complement(2627..3298)
                     /locus_tag="VNB68_02035"
     CDS             complement(2627..3298)
                     /locus_tag="VNB68_02035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36162.1"
                     /translation="MANFTNHWIKESKKDTSGKIRDTLRSAKPLKPTMESAKNRLGIQ
                     TQKLDALLEKLRAKDRSLFTQIVTQLQHHEGPHSKMLSNELSQVRRTIKTVSQLKLSL
                     EQVHMRLESTINLGDAMAALKPAVGTLSTVKTGLSGVMPNVDTELGEINDIFGDIMMN
                     ANTAGEVGFALNPGAGEDVDNILSEASAIAEQRVTDNFPDVPLGSFGSGSFNNSRSSI
                     GEHSQ"
BASE COUNT         1081 a          669 c          719 g         1074 t
ORIGIN      
        1 gatgacgaaa gtagccctac tgacaaaaaa tgaattagat cttgagtttg gagtttgtcc
       61 accggatact tagctaaagt gagaacctag aaatcgaaga atattttcat ggcctccctc
      121 tggtattttc ctgttttgtt atcttttttc aacgcaatat cgccatattc tagatttaca
      181 gccgtaagta cctatatgtc agaaccttga taaatggcac aatacttctc ataatgatat
      241 tggttcggat agaagcgacc tgttctcttg agggctttag gaagtatatc atatttagta
      301 cttgcaaatc atttatacca gaatcatatc tgcaagattt tgaagtattc cccgaacgcg
      361 aagaaggacc cggagctatt tatatcgaag cggctgacaa ggttaccctt aaaaaaatgc
      421 gcgaaataac attcgttaat gctaaagaga ttcttggaat catttactca tctaagagcg
      481 gcaacacaca attgagatgg cgacaaacta gaagaaaaac gggaaaagtg agcggaaatg
      541 catcaccgaa cgcgctagtt aatcttgtag aatccggtgt aattactcag gagtggacag
      601 aggagtattt gaaatcatcc caggttaaaa aagatgagac aaagagttcg gatggagctg
      661 gtagtaagaa ggttgagaca gctgaacaag aattacccga atgagccaat gttgatttaa
      721 gcggtgaacg agtaaatgtt gagacagagt gattattttt aatccaatct cctattgatt
      781 attgaagaat ttctatgatt attagagagg ccaaaggttc ttcaggtaaa gcccagataa
      841 ttattcctca agaccctgat gatcttttca cgcttagaag aataattgac attgaagata
      901 cgttaattgc tgataccact cgggttatta agcaagtcaa ggaatattca agacccgaca
      961 aaggagaacg catcagagtt agaattttga taaaagttca gactgttagt tttgatggtt
     1021 ccgttggcag attaagagtc ggaggcgtca taataaacac ggataatgaa ctagtgccca
     1081 aaggacagca tcattctgta gcaatatcag tcggggacat ggtaacgctc gataagaaca
     1141 ggctctggaa ggaatccgaa ctcgagatag tcaataagtc aatcgaaaat tcaactttca
     1201 ttctagttgc gattgacaca caagaggcag ctgtagcatt agtaacagga acccatctga
     1261 agattttgcc aaatatatat tctggtcaga gtggcaagag atatagtggc tcaaaaaagc
     1321 tcaatccaaa catcgaaaca ttctttggag aagttgtggc cgccgtccaa accattttga
     1381 caagtaatat aacaaatcag aatgtgatca tttttggccc aggagagacg aaacggagat
     1441 ttcataattt tttctctaat cagatggaga atagtggtag caacaaagta agaactaaaa
     1501 ttatagaggg gatcgatgtt gcaggggagg atggcattca tgtctcactt cgatccgatt
     1561 ctttaaggga agtaatgaag gataccaaac ttggtaccgt ctccactgtc cttgatcaag
     1621 tattttatct tgtgagtaaa ggggaaccaa aatttgcgat aggaatgaag gaggtaaatc
     1681 aagcaagcaa gctgaaagca atacaatatc ttttgtactc ggacacagtt tttcagaatg
     1741 ctaccgagga ggaaattgta cttctattga acacgacaga ggctttggga gcgaaagctt
     1801 atggaatgga ctcctccact gatattggcc tcaggatatc ttctcttggg ggaattgttg
     1861 ccctgttaag gtttgctata aggtaaagaa aaagacatag gataacttac aaaaatatag
     1921 tggaggttta tggtgaagac aatgtggcgt cgaccatcca gctcaagtaa tcgctggacg
     1981 cagatttcat ttcaagttca actatttcag gaacctcata cggatgcacc ttccggatct
     2041 cttccttgag ttgtcttaat ttggtagtcg tagttttgaa gaagcaaaga aattcttgtt
     2101 cgtcctttat ctttcccttc caactgtata ttgaacttac cttcataatg ttcacacagg
     2161 cgcataattt tctttctaac aatccctgtg cgactttttt tgcaaggtcc tcagatggaa
     2221 aggtcgacag tactatgacg ccgcttacaa ggccgctatt ttcactgtgt tcttgtgaat
     2281 ccgttttgct gccccccatc ctgatatcgg cctcaccatt aaattattta ctgcccaatt
     2341 aatcatgctt taggcccttt agttctggct ttcagaagcc ttcattaaat aatttagaga
     2401 ctcagttatc agcggtcatt tttcttgccc aattttacta aacttgctga gagtatcaat
     2461 gtgcttactt agatctcgta gagggaaacg tctgtgtgat tgctatcaaa aattgtcatg
     2521 tagataattt tagggtgact atccagaaga aaaaggagta tgaaaaacgg ttcgtattgc
     2581 agaaactttt cctaaagcta cgatcattgc atctcaatta ggggctctat tgcgaatgtt
     2641 ccccaattga agatctagag ttgttgaatg atccgctgcc gaatgatcca agtggcacat
     2701 ccggaaagtt atcagtcact ctctgttctg caatagcact tgcctctgaa agaatattat
     2761 caacgtcttc accggctcct gggtttaatg caaaccctac ttcacccgct gtatttgcat
     2821 tcatcattat atcaccaaat atgtcgttta tttcccctaa ttctgtatca acatttggca
     2881 tcacaccact caaccctgtt tttactgtag ataaggtacc taccgcaggt ttcaatgctg
     2941 ccatagcatc gcccaagttt atcgttgatt caagcctcat atggacctgc tcaagggaca
     3001 atttgagttg cgaaacagtt ttgattgttc ttctcacttg agataattca tttgaaagca
     3061 tcttactgtg gggtccctca tgatgctgta attgagtaac aatctgagta aagagagaac
     3121 gatcttttgc tctcaatttt tccaataagg catccaattt ttgtgtttgt atacctaatc
     3181 tattttttgc ggattccatg gtaggtttta gtggttttgc tgagcgcaac gtgtccctaa
     3241 ttttacctga agtatccttc ttcgactcct taatccaatg attagtaaaa ttcgccatca
     3301 aaaattctgt caagtacagc acgttaaatc atactgtcat aattgaataa ccttatagta
     3361 atattttcta aacatggtat cattgctttc tagtacttta ttccatcttc cttcatggag
     3421 actagaagga aaaatcaatg tactttaaat tgagtcgagt tgattttgtg gctatttcaa
     3481 ttcatcactg tctttggcca aaaattctgt attgtgagag aaaagacatt gttggcagat
     3541 ata
//
LOCUS       DATLQL010000197         1038 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_225448, whole genome shotgun sequence.
ACCESSION   DATLQL010000197 DATLQL010000000
VERSION     DATLQL010000197.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1038)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1038)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1038
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_225448"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            180..611
                     /locus_tag="VNB68_02040"
     CDS             180..611
                     /locus_tag="VNB68_02040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36163.1"
                     /translation="MYKDMVEITTAEYIQIIAAGIYAAALFYTIVTYRRSKRIDQITL
                     GDRIFHGLRELDRELTTIPQESQYDNARSIVYYRIFGTLDYLSFNINSKIIDDKRLIE
                     YMTPSIIRYYEETFLTHASSVDKSDPQSYQEFKRFYLKLKK"
BASE COUNT          332 a          206 c          193 g          307 t
ORIGIN      
        1 tgcccattca ttactgtgtc tatcatacgc ctttctttga tggaaaagtt acgccctgag
       61 ggatctaaca gttccacaac tttctttaga gaaagtgaag tgagcaatac agtcactgct
      121 ctaaaagatc acactatgta aattatattc tccacaatca gagagagaga cccagaagaa
      181 tgtacaaaga tatggtagaa ataacaactg cagaatacat tcagattatt gctgccggaa
      241 tatatgcagc agcattattt tacactattg tgacatatcg tcgttcgaaa agaatagatc
      301 agatcacatt aggagatcgc atcttccatg gactacgaga attggatcga gaacttacca
      361 caatacctca agaatctcag tacgacaatg ctagaagtat agtgtattat cgtatatttg
      421 gtactctaga ctacctttca tttaatatca atagtaaaat cattgatgat aagaggttga
      481 tagagtacat gacgccttct ataatcagat attatgagga gacatttcta acacatgcgt
      541 catctgtaga taagagcgat ccccagtcat atcaggaatt caaaaggttt tatctcaaac
      601 tcaagaagta aaatgcagtg tagttgttgt tgtcattctt aggtaccacc ctctgtcaac
      661 tttaaaggtt tgtagagtct tgggttcttt tctttcagtg tttcccatgt cataggaggc
      721 accatttctt gatacgcgtg aactgctgga ttaaattgag ccgatcgtcg gttattgtcg
      781 gacggacaaa agccaccagc gactttaaat gtagtgacct aaaactttag agctcatcat
      841 ctccttctct tttctcagaa cccatctaaa gtaccgatat cgttctgggc tccaccgaac
      901 cggcttaaaa aataccgaat caactagtat ttggttagct tgaatcgcac gcagagcttt
      961 ctaagttatc aaaaatgcca aatgctaagg gatttgaacc ttgagtgcac caaatattat
     1021 agacatcaca tgatgata
//
LOCUS       DATLQL010000198         1347 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_404341, whole genome shotgun sequence.
ACCESSION   DATLQL010000198 DATLQL010000000
VERSION     DATLQL010000198.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1347)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1347)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1347
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_404341"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..348
                     /locus_tag="VNB68_02045"
     CDS             <1..348
                     /locus_tag="VNB68_02045"
                     /inference="COORDINATES: protein motif:HMM:NF012444.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36164.1"
                     /translation="KFADYAQRKGLQVIVEVHSEQEFKEALELKLQKHNLIGINNRDL
                     KNLEVNIATTEKLLAKHNKGENIIISESGISKQEEIQHLKRAGADSFLVGTSIMESKD
                     ISSKVNELYLSLS"
     gene            472..>1347
                     /gene="trpB"
                     /locus_tag="VNB68_02050"
     CDS             472..>1347
                     /gene="trpB"
                     /locus_tag="VNB68_02050"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HVD36165.1"
                     /translation="MLSNFPIAGKYGEYGGRFIPETLVPAVEELEVAYEKYKNDPDFR
                     NELSYYLSQYAGRPTPLYFAKNLTSYVGGAKIYLKREDLLHGGAHKTNNTLGQGLLAK
                     RMGKKRIIAETGAGQHGVGTAIASSVLGLNAEIYMGSKDIRRQNVNVFRMRLLGAQVH
                     AVRSGTQTLKDAINEALRNWISNVETTYYLIGSVVGPHPYPMMVRDFQSIIGQEIRQQ
                     MKEISNGMPNAIVACVGGGSNAIGTFYPFIDDDEVLLYGVEAGGKGVHSPKHSATLSA
                     GSKGILHGMLSYVLQD"
BASE COUNT          468 a          216 c          315 g          348 t
ORIGIN      
        1 aaatttgctg attatgccca gagaaaagga ttacaggtaa tcgtggaagt acattcagag
       61 caagagttca aggaggcttt ggaattaaaa ttgcagaagc ataatctaat aggaattaat
      121 aatcgagact taaagaattt agaagttaat attgcaacta cggaaaagtt gctggcaaag
      181 cacaacaaag gtgaaaatat tatcattagc gagagtggga taagtaaaca agaagagatt
      241 caacatttaa agagagcagg cgcagattct tttttggtag ggactagcat tatggagtcg
      301 aaggacatca gctcgaaggt aaatgagctc tacctttcgc ttagttaacc aacaatgaaa
      361 atgacaataa taatgaaaat aatagaaaaa atagtaagac gatgatggta ataacatgct
      421 tatcccgaac gtcttaatac tccttgactt cactaggagt ataatcaaaa tatgctaagc
      481 aattttccaa tagctggcaa atatggagag tacggcggac ggtttattcc tgaaactctt
      541 gttcctgctg tagaggagct ggaagtagct tatgaaaaat acaagaacga tccagatttt
      601 agaaatgagc tttcatacta tttatctcag tatgcaggcc gtccaacacc actatacttt
      661 gcaaaaaatc ttacttccta tgtcggaggt gcaaaaattt acctcaaaag ggaggacctg
      721 ttgcacggag gtgcgcataa aacgaataat acgctaggtc agggtttatt agcgaagcga
      781 atgggtaaga agagaataat tgctgagacg ggggcaggtc aacacggggt aggaactgca
      841 attgcttctt cagtattagg cctaaatgct gaaatatata tgggctcaaa ggacatcagg
      901 aggcaaaatg tcaatgtctt ccgaatgcga ttgcttggag cacaggttca tgctgttaga
      961 tctggaacgc aaacgctaaa ggatgcgatt aatgaagcgt tacgaaattg gatatcaaat
     1021 gttgaaacga cgtattatct tatcggttct gtagttggtc cccatcctta tcctatgatg
     1081 gtaagggatt ttcagagtat aataggccag gaaataagac aacaaatgaa agagatttcc
     1141 aatgggatgc caaacgcaat agttgcgtgt gtgggaggag gaagtaatgc cataggaacg
     1201 ttctatcctt tcatagacga tgacgaagta ttattgtacg gagtagaggc tggaggaaaa
     1261 ggagtacatt ccccaaaaca ttctgcaaca ttatccgctg gctcaaaagg aattttgcat
     1321 ggcatgctaa gttatgtatt acaagat
//
LOCUS       DATLQL010000199         1851 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_48722, whole genome shotgun sequence.
ACCESSION   DATLQL010000199 DATLQL010000000
VERSION     DATLQL010000199.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1851)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1851)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1851
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_48722"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1466)
                     /locus_tag="VNB68_02055"
     CDS             complement(<1..1466)
                     /locus_tag="VNB68_02055"
                     /inference="COORDINATES: protein motif:HMM:TIGR01297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HVD36166.1"
                     /translation="MVKDHNKEVRRKYNDEDNRKGFLNNLQGINAYKDKRKVAITSVI
                     ASVGLASIKLMIGYSTNSLGILSEGMHSGLDVIAAFMTLYAIQIVVRPPDARYTFGYA
                     KFESLSSFVAIILLFAVAGWIFYEGIDRILFKNIHPEITIFSFVIMFLSVVVDLGRSK
                     ALYRTARKYGSQALEADALHFRADMLSSSIVIIGLISVSIFHIPNADAYAALVIAGMI
                     IYTSLGLGRRTLDVLLDKAPKGMYHLLLESISGLDGVTKAHDIRIRNMGTSMSVDLHI
                     EVPRTCTHDKAHRIATTVENRIREIMPNCDVLVHVDAIESSTETLTDRIRLIAAETDG
                     IRNIHSLYLSRIVSSASPPFLGKNQKPKTKDDHDVSSDSRNHDSDMSEIWQPLHLYLD
                     VQVDRRLDLKAAHNIVESFEARIKTEIPQVKDITTHIETESTDDTEVMGVEKEPSPYT
                     TENIRKLCLKTEGVMDCQDIGIVDVNGEQHVTLTIIIKA"
     gene            1639..>1851
                     /locus_tag="VNB68_02060"
     CDS             1639..>1851
                     /locus_tag="VNB68_02060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36167.1"
                     /translation="MLNIRCASSISALTGEIVYSQGTPNNEDKCKISEAFIVDCNKEY
                     VLRYTATDSSRYSNTLILFSKLFSFTN"
BASE COUNT          551 a          373 c          334 g          593 t
ORIGIN      
        1 gctttaatga ttatggtaag cgtgacgtgt tgttcaccat tgacgtcaac aattccgata
       61 tcttgacaat ccattacacc ctctgtctta agacataatt tacgaatatt ttctgtggtg
      121 tatgggcttg gttccttttc aacccccatc acctctgtgt catccgtact ttcagtttct
      181 atatgagttg ttatgtcttt tacctgcgga atttcggttt taattcttgc ttcgaaggat
      241 tccacaatat tgtgtgcggc tttcaagtct agacgtctat ccacttgcac atcaagataa
      301 agatgaagag gctgccatat ttcgctcata tccgaatcat gatttcttga atcggaagag
      361 acatcatgat catctttggt ttttggtttt tggttttttc ccaaaaaagg gggggaagcc
      421 gacgacacga ttctagagag atatagagag tgaatgttcc ttattccatc tgtttctgct
      481 gcaataagcc taattctatc ggtaagcgtc tctgtggatg attcaatcgc atctacgtgc
      541 accaatacat cacaattcgg catgatttcc cttatcctat tttcgacagt agtggcaatt
      601 ctatgagctt tatcatgagt acatgtacgt ggaacctcta tatgcaaatc aacagacatc
      661 gaggttccca tgttcctaat gcggatatca tgtgctttgg taaccccatc taatcctgat
      721 atcgattcta acagaagatg atacattcct tttggtgctt tgtccaataa aacatctaga
      781 gttctccttc caagacctaa agatgtataa ataatcatcc cggctattac gagggcagcg
      841 taagcatcag catttggaat atgaaatatt gaaacggaga ttaatccgat gataactatc
      901 gatgatgaaa gcatgtctgc tctaaagtga agagcatctg cttccaatgc ttggctgccg
      961 tatttcctcg cagtcctgta gagtgccttt gaacgcccta ggtcgacaac aacagaaagg
     1021 aacataataa caaatgaaaa tattgtaatt tccggatgaa tattcttgaa caatatccta
     1081 tctatgcctt cataaaaaat ccatccggca actgcgaaaa ggagaattat cgccacaaaa
     1141 cttgaaagac tttcaaattt cgcataccca aatgtatatc tcgcgtctgg gggtcttact
     1201 acaatttgta ttgcatacag tgtcataaat gccgctatga cgtcaagtcc agagtgcatt
     1261 ccttcagata gtattccgag actgttcgta gaatatccaa tcataagttt aattgaggct
     1321 agacctacag aagctattac tgaggttatt gcaactttgc gcttatcctt atacgcatta
     1381 ataccctgta aattatttaa aaatcctttc ctgttatctt catcattgta cttcctacga
     1441 acctctttgt tatgatcttt taccacaatc aaataggaaa tgtattcact atgttatata
     1501 gattaattat aagaaaactg ataactaata acttagattt tcatataaga acgcttccca
     1561 atctgaaaaa attgtaaagt tagctgttac gatagagact gttggaggag ctaccagaac
     1621 tagaatcaaa ccagtgttgt gctaaatatt cgttgtgctt catcgatatc agctctcacg
     1681 ggtgaaattg tttattctca agggactcca aacaatgagg acaaatgtaa gatatcggaa
     1741 gcattcattg tagattgtaa taaggaatat gtcctacggt atacagctac tgacagcagc
     1801 cgctattcca atacattgat tctgtttagc aaattgttca gttttacaaa c
//
LOCUS       DATLQL010000200         1594 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1647124, whole genome shotgun sequence.
ACCESSION   DATLQL010000200 DATLQL010000000
VERSION     DATLQL010000200.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1594)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1594)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1594
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1647124"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            333..>1594
                     /locus_tag="VNB68_02065"
     CDS             333..>1594
                     /locus_tag="VNB68_02065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IC family P-type ATPase"
                     /protein_id="HVD36168.1"
                     /translation="MAKDPVCGMFVEESQDSIRHTVDGKEYFFCSNQCSNEFIEPEKE
                     LKKLKIHVAISIALTIPIIFLSLPHMFPVQFGNLLPMELMHISSYIMLALATPVQFWV
                     GWRFYRGLWDGIKAKASNMDTLIAIGTSAAYLYSATVTLIPNFFPFKSVYFETADVII
                     TLILVGRLLETKTKEKASSAVRKLLDLQPRMAKVLRPVEGTEEFEEVEISVEQIQEGD
                     ILVIRPGERIPTDGVIIEGSSSIDESAITGESIPVDKSKGDEVIGATINKSGLLKVKA
                     TKVGQDTVLSQIITLVEEARTGKAQMQKLVDQVAKYFVPAIVITAVGVGLGWFFIWTI
                     GFTFSLLAFVSVMIIACPCALGIATPAALMMGTGKAAENGILFKGGEYLEIASKVNTI
                     VFDKTGTLTEGRPTVIDIIDLSTMGEKEL"
BASE COUNT          542 a          278 c          338 g          436 t
ORIGIN      
        1 cttataaagt aaaacataaa caatgactac actggctttc attattttct taatcttgat
       61 ttttagattt aatatttatt agttatagtc tcaagttgga aattacatct cagttcatgt
      121 aacttatctc aagtctaaga cgcgaatcat gatgattgga tggatggact ctgaatatcg
      181 gatgaaggtt ccttataatc agcaacataa gacattgtct ggccagcaca ttccaaattg
      241 tcgtggaagg aagaaagttg gaagaagaag gatctataat ttacagttgt aaagccctag
      301 tattatatct ctgtccatct gtactataat ggatggcaaa agatccagtc tgtggaatgt
      361 ttgtcgaaga aagtcaagac tccatcagac acacggtcga cggtaaggaa tattttttct
      421 gtagtaatca atgttcaaat gagttcatag aacctgaaaa agagctaaag aagctaaaga
      481 ttcacgtagc aataagtata gcactgacga ttccaataat attccttagt ttacctcaca
      541 tgtttccagt tcagtttggt aaccttctac cgatggaatt gatgcacatc agcagctaca
      601 taatgctggc tttagctacc ccagtacagt tttgggttgg atggagattc tataggggat
      661 tatgggacgg cataaaagca aaagcctcaa acatggatac acttatcgca ataggaacat
      721 cagccgcata cttgtatagt gcaactgtga ctctcattcc taacttcttc cccttcaaat
      781 ctgtatattt tgaaactgct gatgtgataa tcaccttaat tcttgtagga agattactag
      841 aaacaaaaac aaaagaaaaa gcctccagcg cagtaagaaa actacttgac ctacaaccac
      901 gcatggcgaa agtattgcgt ccagtagaag gaacagaaga attcgaagaa gttgaaatat
      961 cagtagagca gattcaagaa ggagatatac tagttataag acctggtgag agaataccta
     1021 cagatggggt aataatagaa ggttcctcat caattgacga atcagcaata actggagaga
     1081 gtattccagt agacaagtcc aaaggagacg aggtcatagg tgctacgatt aacaaaagtg
     1141 gattgctaaa ggtaaaagct acaaaggttg gccaagatac agtgttatca cagataataa
     1201 cactggtaga agaggcacga acaggtaagg cccagatgca aaagttggtt gaccaagtag
     1261 ccaaatattt tgttcctgcc atagtgatta ctgcagtagg agttggactt ggatggttct
     1321 tcatatggac tataggattt acattcagtc tgcttgcttt tgtatcagtt atgattatag
     1381 catgtccctg tgctcttgga atcgctacac cagcagcact aatgatgggt actggaaagg
     1441 ctgctgaaaa cggcatttta ttcaaagggg gagagtattt agaaatagcc agcaaagtaa
     1501 acacgattgt atttgacaag accggcacac taactgaagg aagaccgact gttattgaca
     1561 ttatagatct atccacaatg ggagaaaagg aact
//
LOCUS       DATLQL010000201         1816 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_935733, whole genome shotgun sequence.
ACCESSION   DATLQL010000201 DATLQL010000000
VERSION     DATLQL010000201.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1816)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1816)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1816
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_935733"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1148
                     /locus_tag="VNB68_02070"
     CDS             <1..1148
                     /locus_tag="VNB68_02070"
                     /inference="COORDINATES: protein motif:HMM:NF013862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HVD36169.1"
                     /translation="GGGSLGAFACGVMKAFAKKDIKFDIISGTSIGAINGAIIAASKG
                     DNPSEELENFWLELAESSIKVIPDFYTLDYDRKKNDMVMVKSPSASLNSTLFGVPKFF
                     IPRWFLPKVDLNEFPQDWTYVYDNTPLAQTIEKYVDFKKLSPGSLFADQDNDPNTIRL
                     VVTAANVLTAEPIVFDSGKIQINVKHLLASTGYPQYGFPWVEAQKNVFGWDGALLSNS
                     PIREVLEASPSVNKHVFMIENYPRKIERLPANMTEVQSRAKDIMFCDKTSSLIKLSKF
                     INKQVDLIERLYDALHQCEHSHLTTDQMGEIEKSYDLLVKRHGAKILSVTRIIRKSPE
                     RPYSQQNADFSVDTIKQIIKEGELSAMEELKSFKFKEQEQPDAEPGI"
     gene            1198..>1816
                     /locus_tag="VNB68_02075"
     CDS             1198..>1816
                     /locus_tag="VNB68_02075"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HVD36170.1"
                     /translation="MAQVAINVRVLNSRINDPSHWLTSERVQGYLARADKIPHRREGE
                     NVLLDFIPKTTRRVLDLGTGDGRLIKLLKTKIPSSKYVAIDFSPPMLRTLKQRFGSDN
                     SVRIVEHDLESILPSVGNFDAVISSLAIHHLKLERKKALYSEIYSILRSGGVFCNLDH
                     FASRSRRLSQHFRRALGGQRAPNRNHETRLNTVESELRLLKKRGFV"
BASE COUNT          619 a          326 c          371 g          500 t
ORIGIN      
        1 aaggtggtgg ttcacttggt gcatttgctt gcggagttat gaaagctttt gccaagaaag
       61 atataaaatt tgatattata tcaggaacct ctataggagc gatcaatgga gcgattattg
      121 ctgctagtaa aggagataat ccaagtgaag aattagaaaa tttttggcta gaattggctg
      181 agagtagtat caaggtaatc cctgatttct acaccttaga ctatgatcga aagaaaaatg
      241 acatggtgat ggtcaaatcg ccgtccgctt ccttaaattc cacgcttttt ggcgttccaa
      301 aatttttcat tcccaggtgg tttctaccaa aagttgattt aaatgaattt ccacaagatt
      361 ggacatacgt ttatgataat acacctttgg cacaaactat agaaaaatac gtagatttca
      421 aaaagctttc tcctggctca ttgtttgccg atcaagataa tgaccccaat acaatacggt
      481 tagtagtaac agcggccaat gtacttaccg ccgagcccat tgtttttgac tcgggaaaaa
      541 ttcaaataaa tgtaaagcat ctcttggcca gtaccggata tccccaatat ggatttccat
      601 gggtagaagc ccagaagaat gtatttggat gggacggtgc tctcttaagt aatagtccta
      661 ttagggaagt tttagaagct tcgccttcag ttaacaaaca tgtctttatg attgaaaatt
      721 atccgagaaa gatagaaaga cttccagcaa atatgactga agttcagtca agagcaaaag
      781 atataatgtt ctgcgataaa acttccagcc tcataaagct ctcgaagttt attaacaaac
      841 aagttgatct aatagaaaga ttgtacgacg cgttacatca atgtgaacat tcccatctta
      901 ctactgatca aatgggagag atagaaaaaa gttacgacct tctagttaag cgacatgggg
      961 cgaagatatt gagtgttaca agaataatcc gcaagagtcc tgaacggcca tattctcaac
     1021 aaaacgctga cttttcagta gatactataa aacagatcat aaaagaagga gaacttagtg
     1081 caatggaaga attaaaatct ttcaagttca aagaacaaga acagccagac gcagaaccgg
     1141 ggatctagta gtaataaaat ttcgttttgt atccaaccaa actcgtaact gacatatatg
     1201 gcccaggttg ccataaatgt tagagtgttg aattcaagaa ttaatgatcc tagtcactgg
     1261 ttaacttcag aacgagtaca agggtattta gcgagagcag ataaaatacc tcacagaagg
     1321 gagggggaga atgtattatt ggactttatt ccaaaaacaa caaggagagt tcttgactta
     1381 ggtacaggcg atgggaggtt gataaagtta ttaaaaacga aaatcccatc ctcaaaatac
     1441 gtggcaattg acttttctcc acctatgctc agaactttaa agcaacgatt tggaagtgat
     1501 aactctgtcc gcattgttga acatgatctt gaatccatcc ttccaagtgt aggaaatttt
     1561 gatgcagtaa tatcgagtct ggctatacat cacctaaaac tagaacgcaa aaaagctcta
     1621 tattcagaaa tttattccat actaagatct ggtggcgtat tttgcaacct tgatcacttt
     1681 gcatcaaggt ctcgaagact gagtcaacat ttcagacggg ccctaggtgg tcaaagagca
     1741 cctaatagga atcatgaaac gcgcttaaat accgttgaaa gcgagctcag attgttgaaa
     1801 aaaagaggct ttgtgg
//
LOCUS       DATLQL010000202         1287 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1822854, whole genome shotgun sequence.
ACCESSION   DATLQL010000202 DATLQL010000000
VERSION     DATLQL010000202.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1287)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1287)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1287
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1822854"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..474)
                     /locus_tag="VNB68_02080"
     CDS             complement(<1..474)
                     /locus_tag="VNB68_02080"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HVD36171.1"
                     /translation="MTKWFAKKLTEISKFDNYMIPEKAVDGLKLDANENLVLDKKFIY
                     HLALQALKDIDFRQYPIKEFEELYLQLAKYTKMDKKYLAIGNGSDQIIELILSIIGKN
                     QRATVFTPTFSYFINRCQLHGMLVDEVPLKTYDNVRYNKEFLKSARRSGLVYICSP"
     gene            complement(471..>1287)
                     /gene="hisD"
                     /locus_tag="VNB68_02085"
     CDS             complement(471..>1287)
                     /gene="hisD"
                     /locus_tag="VNB68_02085"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004399 - histidinol dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HVD36172.1"
                     /translation="PMKNGNIDPLTLVAADICGIDEFYKVGGAQGITALTNGTQSIPK
                     VSKIIGPGGIFVTIAKILASSRVSIDMVAGPTELIIYADSSANPVLIARDLISQAEHS
                     FDTLCGLVTISSKLANEVSTQIQSIIENDNIGRRDIVKRSLESNGFSAVCNTESTAIE
                     FVNEVAPEHLQLMTRDARTAAKKITSAGLVLIGKYAPSSASDYSFGSNHVLPTLGFAK
                     SRASLSVLDFIKIVNRVEASKSGLANAEGVIKEIALAEGLVNHYQAVKERMKE"
BASE COUNT          368 a          266 c          245 g          408 t
ORIGIN      
        1 tggagagcaa atgtatacta gaccagacct tctagcgctt ttcagaaact ctttattgta
       61 acggacgtta tcatacgtct ttaagggaac ttcatcaaca agcataccgt gtaattggca
      121 acggttgatg aaatatgaaa atgtgggcgt aaatacagta gcacgttggt tcttacctat
      181 tatcgaaagg attagctcta taatttgatc cgaaccattg ccgatggcca ggtatttttt
      241 gtccatcttc gtatactttg caagctgcaa atatagttcc tcaaattcct tgattggata
      301 ttgtctaaaa tcaatatctt ttaaagcctg aagggctaaa tgataaataa atttcttgtc
      361 gagaacaaga ttttcattcg catccaattt cagaccatcg acagcttttt caggtatcat
      421 atagttatcg aatttggaaa tttcggttaa tttctttgcg aaccacttag tcattctttc
      481 atccgttcct tcacagcttg ataatggttc acaagacctt ctgctagtgc aatttcctta
      541 atgactcctt cagcgttagc taacccggat ttcgaagcct ccactctgtt gacaattttt
      601 ataaaatcaa gtactgaaag ggatgctctg gatttggcaa atcctagtgt aggtagaaca
      661 tgattggatc caaaagaata gtcgctagcc gaggaaggcg catatttacc gatcaatacc
      721 aagccggcag atgtgatttt ctttgcggcg gttcttgcgt ccctagtcat tagttgtaaa
      781 tgttctggag ctacttcatt aacgaattct atagcagtgg actcagtatt acatacagca
      841 gaaaatccgt tgctctctag gctcctctta actatgtcac gccgaccgat attatcattc
      901 tcgataatag attgtatctg cgttgagact tcatttgcaa gtttgctaga aattgttacc
      961 aaaccgcata acgtgtcaaa actatgttct gcctgagaaa ttaagtctcg agcaattaat
     1021 accgggttag ctgaggagtc agcgtaaatt attaattcgg ttggaccagc aaccatatct
     1081 atcgaaactc tactagaagc gagtattttt gctatagtta cgaatattcc gcctggcccg
     1141 atgatcttac tgactttggg aatactctgc gtcccattgg tcaaagccgt aattccttga
     1201 gcaccaccga ctttgtaaaa ttcatcaatc ccacaaatgt cagcagcaac aagagtaagg
     1261 ggatctatgt ttccattttt cattgga
//
LOCUS       DATLQL010000203         1639 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1822913, whole genome shotgun sequence.
ACCESSION   DATLQL010000203 DATLQL010000000
VERSION     DATLQL010000203.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1639)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1639)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1639
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1822913"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(158..1237)
                     /gene="hflX"
                     /locus_tag="VNB68_02090"
     CDS             complement(158..1237)
                     /gene="hflX"
                     /locus_tag="VNB68_02090"
                     /inference="COORDINATES: protein motif:HMM:TIGR03156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HVD36173.1"
                     /translation="MKVTSKNAILITYPVDHVADEAKSLAESAGYSIKEIITQRHLTR
                     SKYGVGKGKAEELREIVRSREINFIIFDEVLKPTQQYNLAHLCKVDIIDREKIILQMF
                     TLRSNTEESKIQVNLAQLHYDVVRIKEKVRLAKKGEQPGFLGLGKYDADVHLLDIKSR
                     ITVLKRKLMKEENKKLLHRIGRIRQGFPTISIAGYTSAGKTTLFNRLTGESRFVDSGL
                     FTTLSTMSRAIKLSDNKVIISDTVGFISKLPAYMVDAFKSTLQDLTFSSLVLLVLDVS
                     HPYEVIRKQLSSSLIVMNHLGIPLGKIVYVLNKVDLVDQDLVEKTIKNLDIPNSVHKS
                     AMISAKTGINMESLLKILELKLFDN"
     gene            complement(1234..>1639)
                     /locus_tag="VNB68_02095"
     CDS             complement(1234..>1639)
                     /locus_tag="VNB68_02095"
                     /inference="COORDINATES: protein motif:HMM:TIGR00270.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="multiprotein bridging factor aMBF1"
                     /protein_id="HVD36174.1"
                     /translation="ILAYCEICGILLSFDKVDVLVDGAQLTVCKSCSKRGKPVSRPAI
                     QNLSKPKKFQNPRTNRFQIMDDIILVEDYAAVIRKARMQKNLTHDQLGSMLKEKATLL
                     RRFETGSLKPDRNFATKLERFLGIKLYVAEDE"
BASE COUNT          445 a          354 c          271 g          569 t
ORIGIN      
        1 cgtgtcaaca atacgattgt ctgaataagc catgtaaatt ttcttgcagc caaatgctcg
       61 agacactaat gcaacgtggg tactagtcct atcatctcta accaacctat gccctaatcg
      121 aaggaccgaa acttggaatg gatattcacg atcgttatca gttgtcaaac agttttaatt
      181 ccaatatttt tagcaagctt tccatgttaa tcccggtttt tgctgaaatc atggcacttt
      241 tatgaaccga attgggaatg tccaaatttt ttattgtctt ctctaccaaa tcctgatcca
      301 ccaggtccac cttattcaac acataaacta tcttaccaag cggaattcct aaatgattca
      361 ttactataag actactcgac aattgtttcc ttataacttc gtatggatga ctcacatcca
      421 gcactagtaa tactagactt gaaaatgtta gatcttgcaa ggttgatttg aatgcgtcta
      481 ccatatatgc tggaagtttg ctgatgaaac ctacagtatc ggatatgatc accttattgt
      541 cactaagttt tatggcacgg ctcatagtcg acagagttgt aaataatcca gaatccacaa
      601 atcttgattc accagtaagc cgattgaaca atgtcgtttt ccctgcagaa gtatatcctg
      661 cgattgaaat tgttgggaat ccttgcctga ttctgcctat acggtgcaac agttttttat
      721 tctcctcctt catcaatttc ctcttgagaa cagtaattct acttttgatg tctagtaaat
      781 gtacatctgc atcatatttt cctaaaccca gaaaacctgg ctgttctcct ttcttggcga
      841 gtcttacttt ttccttgatt ctaacgacat cataatgcaa ttgggcaaga ttgacttgaa
      901 tcttcgattc ttctgtgttt gatctaaggg taaacatctg taggattatt ttttccctat
      961 caatgatgtc aaccttacaa aggtgtgcca agttatattg ctgagtgggt ttaagcacct
     1021 cgtcaaatat tatgaaattt atttcgcgag atctaacgat ctctcttagt tcttcggcct
     1081 tacctttgcc aacgccatat tttgatctag tcagatggcg ttgagtaatt atttctttga
     1141 ttgaatatcc tgcagattca gccagtgatt tagcctcatc tgcaacatgg tcgacaggat
     1201 atgttatcag tattgcattc ttacttgtta ccttcattca tcttcagcta cgtatagttt
     1261 aattcctaag aacctttcca attttgttgc aaagtttctg tccggtttca aactacctgt
     1321 ttcaaacctc cgcagtaaag tggccttctc ctttaacatc gagcctaatt gatcgtgcgt
     1381 caaatttttc tgcattctgg cttttcttat aacggcagcg tagtcctcaa ctaatataat
     1441 atcgtccatt atttgaaatc tatttgtgcg aggattttga aacttctttg gttttgaaag
     1501 gttctgtatt gccggtctac taaccggttt gcctcttttt gaacaactct tgcaaaccgt
     1561 taactgcgct ccgtctacca gaacgtccac tttatcaaaa gataagagaa taccacatat
     1621 ttcacaatat gccaagatt
//
LOCUS       DATLQL010000204         1066 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_226975, whole genome shotgun sequence.
ACCESSION   DATLQL010000204 DATLQL010000000
VERSION     DATLQL010000204.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1066)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1066)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1066
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_226975"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..920)
                     /locus_tag="VNB68_02100"
     CDS             complement(<1..920)
                     /locus_tag="VNB68_02100"
                     /inference="COORDINATES: protein motif:HMM:NF012296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HVD36175.1"
                     /translation="MSSNKITKYPPGPTYKMPGKLIRQFIHDPIKTLSTISQKYGDIS
                     HFKLGPKQHVYLINNPDYIERVLVYDHRNFKKGKRLQAAKALLGEGLVTSEGDFHNRQ
                     RRLIQPIFHPGQIMGYGKIMIDYAIRLRDRWKNEDVLDISQEMMHLTLGIICKSVLNY
                     DVESEAEQVGKALTTTRNYSKRLQSPIGHVLDKIPILPAPRGAREAKKELDSLVYGLI
                     SDRRKQQQQSDNNNNNSGHDDLLSRLLQAQDSNLAGPAAAAASNSGGARSSSSPNGKM
                     SDKQVRDEVMTIFIAGHETTANALTWTFYLL"
BASE COUNT          286 a          203 c          204 g          373 t
ORIGIN      
        1 agtaggtaga aagtccatgt aagtgcattg gccgtagttt catgacccgc aataaatata
       61 gtcataactt catctctaac ttgtttatct gacattttac cattaggcga agaagaggat
      121 cgtgcaccac cgctgttgga agcagcagca gcagcaggac cagccaagtt agaatcttgc
      181 gcctgcagta gtctggagag caaatcatca tggccactat tattattatt attatcagac
      241 tgttgttgtt gttttcttct gtctgaaatt aatccataca ccaatgaatc caattccttt
      301 ttggcttctc gagctcccct cggagcaggt agaataggaa ttttatctag aacatgacct
      361 attgggctct gaagtcgttt agaatagtta cgcgttgtag ttaatgcttt gccgacttgt
      421 tcagcctctg attccacgtc atagtttaat accgatttac atataatgcc aagtgttagg
      481 tgcatcattt cttgagagat atccaatacg tcttcattct tccatctatc acgaagacga
      541 atggcataat caatcataat ctttccatag cccataattt gtcctggatg gaatattggt
      601 tgtattagtc gtcgttgacg gttatgaaag tctccttcac ttgtgactag tccttcgcct
      661 aaaagggctt ttgcagcctg aagtcttttg ccctttttaa aatttcgatg atcatagacg
      721 agtactcttt caatgtaatc aggattattg attaaataca catgttgctt aggtcctaat
      781 ttgaaatgag atatatcgcc atatttttga gatatggttg ataaagtttt gataggatcg
      841 tggatgaatt gacgaatcaa cttacctggc attttatagg ttggaccagg aggatacttg
      901 gtaattttgt tgctactcat gcaggaccct atttctctaa attattggta aattataagg
      961 ttttattatt tgtagttgct ttgtatttca cttttcttac ttctacgggt atatatatac
     1021 tgtttgcact aaaagcattg gacattcatc cctcctcaca ttctgc
//
LOCUS       DATLQL010000205         3134 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_227011, whole genome shotgun sequence.
ACCESSION   DATLQL010000205 DATLQL010000000
VERSION     DATLQL010000205.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3134)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3134)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3134
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_227011"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..568)
                     /locus_tag="VNB68_02105"
     CDS             complement(<1..568)
                     /locus_tag="VNB68_02105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36176.1"
                     /translation="MIYDSLLDSGGLNTIIYNDPYAKLCLVSTIILELQEERRKKAVY
                     IDLDTVFTAYVKAGLIPPLTIKKMEPSIYASDILRIYIPDEMIELSILDSIKYIDDAS
                     IVIFDSITSFYSLFYNELESDTSVTREMGRINQLLLILLMLLLKNTSFSKIPLLLTSM
                     IRYKRKGGWIGTPTGNRFLRSRSSVNLYV"
     gene            606..1790
                     /locus_tag="VNB68_02110"
     CDS             606..1790
                     /locus_tag="VNB68_02110"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HVD36177.1"
                     /translation="MSYDQDLELIRKDFPVVKKKIYMNNGSFAPIPISTIKAMTDFLL
                     RYSEEGPDSTSVQEYITSLMKEVRDRVSHLINCDPEEVIFTQSTTEGINQISTGIPWK
                     ESDLIIVRGGPHEHYANYFPWLKVSEKFGVEIKEIKIDVDGFFDTDEIERIARNKNAK
                     LITLSHALYNNGAIMPVEEIGKIARDNNVLYCIDAAQTVGSIRVDVKRIGCDFMAFPS
                     FKWICGPTGIGILYCSKKSSEGLTPQYVGGESAILTDHRNLASVEFPQRFQTGFRNYV
                     GLAGLESSLRYILRIGIDSIRKMNMKIADELRGSLEKMEDVSIYGPQDERLRTSILPF
                     GAKSSDAKTIVSKLEDYGIIVAERDIEGAGKKKVVRASPHFYNDQSEVESFVRSLNMI
                     LK"
     gene            complement(1782..2054)
                     /locus_tag="VNB68_02115"
     CDS             complement(1782..2054)
                     /locus_tag="VNB68_02115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC ligand binding domain-containing
                     protein"
                     /protein_id="HVD36178.1"
                     /translation="MPTAYVLINCDLGSEEEILQEIRKLPEVTEVSGVYGVYDIIVKI
                     TSDSMDKLRETITWHVRRIDKVRSTLTMIVIEGQGGRDKKYQAMSF"
     gene            complement(2178..2840)
                     /locus_tag="VNB68_02120"
     CDS             complement(2178..2840)
                     /locus_tag="VNB68_02120"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF016115.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016812 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in cyclic amides
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclase family protein"
                     /protein_id="HVD36179.1"
                     /translation="MLTTRVIDLTREIGVDTRVFPGSPSPAMISWSKMDVHGYDSEVV
                     FLSTHTSTHMDAPSHFMTNATTIDKIDVSRFVSNAVIIRTNKKELDELITVDDIVETN
                     TDIAPGDSIIFSTGWESEVCKEYYFSGNPGLSPEAAEYLIKRRINAVAIDSPSIDKGM
                     DHNFTCHKILLSHEILIVENLCNLGQVNDLRFKLLVAPLKFSGATGSPVRAIAIIGQG
                     VF"
     gene            complement(2936..>3134)
                     /locus_tag="VNB68_02125"
     CDS             complement(2936..>3134)
                     /locus_tag="VNB68_02125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36180.1"
                     /translation="SNCNRIVTFVPIIYTVTENERSLLKAAEMEGRVILGDLEKIMKD
                     HKIPMFGCAECKKPIPGCGIF"
BASE COUNT          995 a          601 c          598 g          940 t
ORIGIN      
        1 cgacgtaaag atttacactg cttcttgatc taagaaacct gtttccagtg ggtgttccta
       61 tccacccccc ttttctttta taacgaatca tactcgttag gagaagaggt atttttgaaa
      121 atgatgtgtt cttcaacagt aacattaaca atatcaaaag aagttggttg atacgtccca
      181 tctctcgagt aacacttgta tcggactcta attcgttgta aaataagctg tagaatgagg
      241 ttatggaatc aaaaatgact attgaggcat catcgatgta tttgatcgag tctaaaatgg
      301 atagctcaat catctcatca ggaatataaa tccgcagaat atctgatgcg taaatggaag
      361 gttccatttt ttttatcgtg agcggtggaa ttaaccctgc tttgacatac gcagtgaata
      421 cagtatcaag atcaatatac acagcttttt tccgtcgttc ctcctgtagc tctaagatga
      481 tcgttgagac gagacataat ttcgcgtaag gatcattgta aataattgta ttgagtcccc
      541 cggagtctag aagagaatca tagatcatat tcacttttat aatattagaa tgaaaggtgg
      601 ttataatgag ttatgatcaa gatttggaac tcatccgcaa agattttcct gtagttaaaa
      661 aaaaaatata catgaataac ggctcctttg ctccgatccc aatatccact attaaggcaa
      721 tgacggattt ccttttaaga tactctgaag agggtcctga ttcaacttca gtgcaggagt
      781 atatcacatc attgatgaaa gaggtcagag atagagtgag ccatctaata aactgtgatc
      841 ctgaggaagt tatattcact caaagtacca ctgaagggat aaaccaaata tcgacaggga
      901 tcccctggaa agagtctgat cttatcatcg tacggggagg acctcatgaa cattatgcaa
      961 actatttccc atggctaaaa gtgtcggaga aatttggagt ggaaatcaag gaaatcaaga
     1021 tagatgttga cggatttttt gatacggatg aaatagagag aattgctaga aataagaatg
     1081 caaaactaat tactctaagt cacgcacttt ataataacgg agctattatg cctgttgaag
     1141 aaataggtaa aattgctaga gacaataacg tactgtactg catagatgcg gctcaaaccg
     1201 ttgggtcaat cagagtagat gtaaagagaa taggatgtga ttttatggca tttccgagtt
     1261 tcaaatggat ttgtgggcca acaggtatcg gaattctcta ctgtagtaag aaatcttcgg
     1321 aaggactgac accccaatat gtaggtggag aatcagctat tcttaccgat cataggaatt
     1381 tagcctccgt cgaatttcct caaagatttc aaacaggatt tagaaactat gtaggactcg
     1441 ctggtctaga atcctcattg cgatacatct tacgtatagg tattgatagc atccgaaaaa
     1501 tgaacatgaa gatagcggac gaattgagag gatctctaga aaaaatggag gatgtgtcca
     1561 tctatggacc tcaagacgag agattgagaa catcgatact accatttgga gcgaagtcat
     1621 ctgacgcaaa gacgatagta tcgaagttgg aggattacgg cattatcgtg gcagaaaggg
     1681 acattgaggg tgcaggaaag aaaaaagtgg tcagagcttc tccacacttc tacaatgatc
     1741 agtcagaagt agaaagtttc gttaggagtt taaatatgat actaaaatga cattgcttga
     1801 tatttcttgt cccttccgcc ttgaccctca attacgatca tagtaagcgt tgatctaact
     1861 ttgtcgattc ttctcacatg ccaggtaata gtttctcgaa gcttatccat gctgtccgat
     1921 gttatcttca caatgatgtc atagactccg tatacaccac tcacttcagt aacctcgggt
     1981 aattttctta tttcttgtaa tatctcttcc tcagatccaa gatcgcaatt tattaaaaca
     2041 taggcagttg gcatattact aataacaata ttctaggaag tattaaagtt gttgggaaat
     2101 atgatatcct ttctttcttt gagcagactg aaaaacgcct aaacaaagtc aacgaccaac
     2161 gtaccgtgat ttagattcta aaatactcct tgcccaatta ttgcaatagc cctgacaggc
     2221 gatcctgtcg cgccggaaaa ctttagaggt gcgactagta acttgaacct cagatcgttc
     2281 acttgcccca aattgcataa attttctacg atcaatattt catgcgacaa tagtatttta
     2341 tgacaagtaa aattatggtc cattccttta tcgatactag gtgaatctat tgcaacagca
     2401 ttaatccttc tcttgatgag gtattctgca gcttctggtg ataatccagg attgccagag
     2461 aaataatact ccttgcatac ttcgctctcc catcccgtag agaatattat tgaatcacct
     2521 ggcgctatgt ccgtgtttgt ttccacaata tcatcaacag taattaattc atccagttcc
     2581 ttcttgttag ttcttataat aacagcatta cttacgaatc tactaacatc aatcttgtct
     2641 atggtagtgg catttgtcat gaaatgagaa ggcgcatcca tatgcgtact cgtatgcgta
     2701 cttaggaata cgacctctga atcataacca tggacatcca ttttagacca gctaatcatt
     2761 gctggtgaag gagagccagg aaaaactctc gtatcaacac caatttcacg agttaaatcg
     2821 ataacacgtg ttgtcaacat cttgttagat tcacaccaaa taatatagta ttacgttggt
     2881 ccctatcatg aatatatgtt ggaacaagca atatgtcctt aagtacgaaa acaactcaaa
     2941 aaattccaca ccctgggata ggtttcttac attctgcgca tccaaacata ggtatcttat
     3001 gatccttcat tatcttttct aaatcgccaa ggataactct accctccatt tctgcagctt
     3061 tcaagagcga cctttcattt tctgttaccg tatatatgat tgggacaaaa gtaactattc
     3121 gattacaatt actg
//
LOCUS       DATLQL010000206         1150 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_761213, whole genome shotgun sequence.
ACCESSION   DATLQL010000206 DATLQL010000000
VERSION     DATLQL010000206.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1150)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1150)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1150
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_761213"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(2..76)
                     /locus_tag="VNB68_02130"
     tRNA            complement(2..76)
                     /locus_tag="VNB68_02130"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(39..41),aa:Arg,seq:gcg)
     gene            286..>1150
                     /locus_tag="VNB68_02135"
     CDS             286..>1150
                     /locus_tag="VNB68_02135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homocysteine S-methyltransferase family protein"
                     /protein_id="HVD36181.1"
                     /translation="MKESFTQAINDRILLFDGAMGTEIQKLDLEPSKYPDNMDGFNDG
                     LVMSAPTIIEEIHRSYLRAGSDCIETNTFGSNQLKLEEYGYGDRVIEVNKLAASIAVS
                     VTLEFSDKERFVIGSMGPSGYLPSSNDPDLGQIELNKIIRAFSLQAEGLIMGGVDALL
                     IETSQDILEVKLAIEGGFQAIQKTGKKIPIISNVTLDKYGKMLLGTNVQAAYTTVCDM
                     GILAFGLNCSTGPLEMDPSIRWLDEQDELPLLVMPNAGMPENVGGKAIYKMSPSSMAS
                     ALGDFLRKYKNI"
BASE COUNT          373 a          219 c          243 g          315 t
ORIGIN      
        1 acgggtccag agggactcga accctcgacc agctgctccg caggcagcca ttctatccaa
       61 gctgaactat ggaccccctg ctacagatag tttttccata tatgaacttc ccttcgcaat
      121 tcaacaaaga ttaagagcga cacctcttca taaagtttga acgtatgagg tttacataca
      181 tcctaattta aggaatcatt actcttaggt ggtatgaatc aaatttataa aacccacacg
      241 acacgatcta ttttgagatt taaaaactca ttagttgtat aaaacatgaa agaatcattc
      301 actcaagcta tcaatgacag gattctcctt tttgatggcg caatgggaac tgaaatccaa
      361 aagctggatc tagagcctag caagtatcct gacaatatgg acggcttcaa tgatggccta
      421 gttatgagcg cccctacaat aattgaagaa attcacagaa gttatttgag agctggatca
      481 gattgtattg agactaatac atttggtagc aaccagttaa aactcgaaga gtatggctat
      541 ggcgataggg ttatagaagt aaataaattg gccgcttcaa ttgccgtttc agtaactctc
      601 gaattcagcg ataaagaaag atttgtgatt ggttccatgg gtccgagtgg ttatttgcca
      661 agctctaatg atcctgactt ggggcaaata gagttaaaca aaatcatacg agcattttcc
      721 cttcaagcag agggattgat tatgggagga gttgatgcgt tactcattga aacaagtcaa
      781 gatatcctag aagttaaact tgccattgag ggaggatttc aggcaatcca gaaaactgga
      841 aaaaaaattc caataatttc taatgttact ctagacaaat acggaaaaat gctactggga
      901 acaaatgttc aagctgcata tactaccgta tgcgacatgg gaatacttgc atttggttta
      961 aattgttcaa caggacctct ggagatggat ccgagtatac gttggcttga tgagcaggat
     1021 gagcttcctc tcctagtcat gccaaatgca ggaatgccag aaaatgttgg tggaaaggcc
     1081 atttataaaa tgagcccatc gagcatggca tcagcccttg gtgatttttt gcgtaagtac
     1141 aaaaatatac
//
LOCUS       DATLQL010000207         1439 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1823340, whole genome shotgun sequence.
ACCESSION   DATLQL010000207 DATLQL010000000
VERSION     DATLQL010000207.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1439)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1439)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1439
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1823340"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(473..895)
                     /locus_tag="VNB68_02140"
     CDS             complement(473..895)
                     /locus_tag="VNB68_02140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HVD36182.1"
                     /translation="MSRVRSENTCRGFFKGLAYNPSAITEEDIDVFASHDSAPGAMRA
                     GFEYFRAFPIDAEQNKESSKAKITMPVLSLGGDIYPALGGDLPGNFALSSLQSLATNV
                     KGVTVPLSGHWIPEEQPDFVIEQLVNFFGGNNTTNATE"
     gene            complement(837..>1439)
                     /locus_tag="VNB68_02145"
     CDS             complement(837..>1439)
                     /locus_tag="VNB68_02145"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HVD36183.1"
                     /translation="NRRLQWHSSHNQVNQTSSVLMEGISFEIDNMTFSHHITTVNGIQ
                     MHYVIGGQGDPVVLLHGWPQTWYEWRHIMPALAKNYTVVAPDIRGFGDSSRPLTGYDG
                     KTTAEDIHQLMSQLGFDKIFLVAHDVGAQTAYSSAAAHPNNVTKLVIMDFPYPGFLPP
                     EFGANGPWWFAFHQVPDLLEAIVQGKEREYLSWFFQRVSL"
BASE COUNT          431 a          288 c          279 g          441 t
ORIGIN      
        1 tgatgggccc gacggaatgt gaatcaaatt tgacatggaa ataggtctat gatagcacga
       61 gtactatcat acaaattgtt tgagtagagt agtattagcg cgatggagag tacttaagac
      121 taaggatggt taaggtatta aagcagtgtt tataattcta tattagccct tccaattact
      181 acaagttcat tacgtttcat agatgattga gtaatatcta atccatgtgc tttcttcaat
      241 attcacggaa atttgaagct cacggttcat tggatataac taatattttc aatgattgtt
      301 gagcttcatt aatctcataa ctggcgactg caaaatctcc ttgcggtata tgttaaatcc
      361 aaatctgctc acgctatatt cccagccaga gtttcaaagg tatgtatgcc tagctagaat
      421 gaagtttaat gtttgacgtt gataatacaa ttgcaaagtt aacagaaaat actcattcgg
      481 tagcattagt agtattatta ccaccaaaga aattgacaag ctgttctatt acaaagtctg
      541 gctgctcttc tggaatccaa tgtcctgaaa gaggaaccgt gactcccttt acatttgtag
      601 ctaatgattg taacgagctt aacgcaaagt tgccaggtag atcaccacct aatgcagggt
      661 aaatatcacc acctaatgat aatacaggca ttgttatctt tgccttagat gattctttat
      721 tttgctctgc atctattgga aaagctcgaa aatattcaaa gccggcacgc attgccccgg
      781 gtgctgaatc atgacttgca aatacatcta tatcttcctc tgtaattgca gatggattat
      841 aagctaaccc tttgaaaaaa ccacgacagg tattctcgct ccttaccctg gacaatagct
      901 tctagcagat cgggtacttg gtgaaaagcg aaccaccatg gtccattcgc accaaactct
      961 ggaggtagaa aacccgggta tgggaaatcc attatcacca atttggttac attgttagga
     1021 tgagctgctg cagatgaata agctgtctgt gctcctacat catgtgccac taagaaaatt
     1081 ttatcaaatc ctaattgaga catcaactgg tgtatatcct cggccgtagt ctttccatca
     1141 taacccgtta aaggtcttga agaatcacca aatcctcgaa tatcaggtgc gactacggtg
     1201 taattcttag caagtgccgg cataatgtgt ctccactcgt accatgtctg tggccatcca
     1261 tgcaatagca ctacaggatc gccttgacct ccaattacgt agtgcatttg aataccattt
     1321 acggttgtta tatgatgtga aaaagtcatg ttatcgattt caaaagatat tccttccatt
     1381 agaacagaag atgtttggtt aacttgattg tggctgctgt gccattgtaa cctgcgatt
//
LOCUS       DATLQL010000208         1578 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_761587, whole genome shotgun sequence.
ACCESSION   DATLQL010000208 DATLQL010000000
VERSION     DATLQL010000208.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1578)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1578)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1578
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_761587"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1367
                     /locus_tag="VNB68_02150"
     CDS             <1..1367
                     /locus_tag="VNB68_02150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HVD36184.1"
                     /translation="IFIDEIDSIAPKREEVTGEVERRVVSQLLSLMDGLESRGKVIVI
                     AATNIPNAIDPALRRPGRFDREIEIKVPDKRGRLEILQIHSHNMPLESDVNQEKIAAV
                     THGFVGADMEYLCKEAAMRCLRRLLPEISLEDEKISPETLDKLVITMNDFEMAIKDVM
                     PSAMREVYLEIPDVKWTDIGGLEDVKLELQEAIEWPLRYPDLYKELSHTLTKGILLHG
                     PSGTGKTLLAKAVATESETNFISVKGPELISKWVGESERGIREIFRRARQAAPCIIFF
                     DEIDSIAPTRGGLEGGASGFSGTQPILSQLLTEMDGVQQMQGVMVIAATNRVDIIDTA
                     LLRPGRFDKIVYVPNPDKNTRFRILEVHTKGKPIGRDIDLMRIAEMTNGFSGAEVSAV
                     VNTAISLVLHEYLQKYPSPEEAAKHTSDAVVSSQYFEEAVRKIKKQKETKPGETISSM
                     VSYR"
BASE COUNT          540 a          260 c          362 g          416 t
ORIGIN      
        1 ttatattcat agatgagatt gattcgattg ctccaaagag agaagaagta actggtgaag
       61 ttgaaagaag agtagtctca cagctattat cattgatgga tggtctagaa tcaagaggta
      121 aggttatcgt aattgcagcc actaatatac caaatgcaat agaccctgca ttaagacgac
      181 caggtagatt cgatagagaa attgaaatca aagttcctga caagcgaggt cgattggaga
      241 tattgcagat ccattcgcat aatatgcctc tggaatcaga tgtcaatcag gaaaaaattg
      301 cagcggtaac tcatggattt gtaggtgcag atatggaata tctgtgtaaa gaagcagcta
      361 tgaggtgctt aagaagactg ttaccagaaa ttagtttaga agatgaaaaa atatcgcctg
      421 aaacattaga taaactggta ataactatga acgattttga gatggcaata aaggatgtta
      481 tgccttctgc gatgagggaa gtctatctag agatacctga cgttaaatgg acagatatag
      541 gtggactgga agatgtaaaa cttgaactcc aagaagcaat agaatggcct ttaagatatc
      601 ctgatttgta taaggagctt agccatactc ttacgaaagg catattatta cacggacctt
      661 ctggtacggg taagacgcta ttggcaaaag ccgttgctac agagtctgaa accaacttta
      721 tcagtgtaaa ggggcctgaa ttaatatcaa agtgggtggg tgaatcggag agaggaataa
      781 gagagatatt cagaagagcc agacaagcag ctccatgtat tatattcttt gacgaaatag
      841 attctattgc ccccacaagg ggtggattgg aaggaggtgc tagcggcttt agtggcacac
      901 agccgatatt atctcaatta ttaacagaga tggatggcgt acagcaaatg caaggagtaa
      961 tggtaatagc tgccacgaac agagttgata tcattgatac tgcactactg cgcccaggga
     1021 gatttgataa aattgtttat gtaccaaatc ctgacaaaaa tacaaggttt agaatcctgg
     1081 aagtacatac aaaaggtaaa cctattggtc gggatataga tttaatgaga atagcggaga
     1141 tgacaaatgg tttcagcggt gccgaagttt cggcagtagt caataccgcg atttctttag
     1201 tattacatga gtaccttcaa aagtatcctt cacctgaaga agcagcaaaa catacttcag
     1261 atgccgtcgt atcatcacaa tatttcgaag aggcagtcag aaagataaag aaacaaaagg
     1321 aaacaaaacc aggggagaca atttctagta tggtttccta taggtaaggc taccttgttc
     1381 aatcaatgct ggattaacat tgtaacaata tacatatggg cgagcccgtt aactaacggt
     1441 tttatctcca tcagaaaata aattttgacg tagcgggttg aggttagatt aactacccat
     1501 taaatgacct aaaccagctt ttgggatact ttgataaatt ttgttgtcca atactccacg
     1561 tcattgtaga gcccgtgc
//
LOCUS       DATLQL010000209         3910 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2536566, whole genome shotgun sequence.
ACCESSION   DATLQL010000209 DATLQL010000000
VERSION     DATLQL010000209.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3910)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3910)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3910
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2536566"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1511
                     /locus_tag="VNB68_02155"
     CDS             <1..1511
                     /locus_tag="VNB68_02155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HVD36185.1"
                     /translation="RWSGNPNTIVTLKDGAIPFVNIQNFTISLPSLNYYLGTEFQKYR
                     QWRAALWYESMRIAYSTKVLSYDLAFGFILNTLESKRIEILGLGEWEGMENEVIFNEG
                     ISWLSRPLLNALYGKQKIIEAFSQYLLTGYIKGELFGGELERVRKAVDFANAVVKDAL
                     YNNRSTDWIEQQVPQIVKLLQINPLITIPLIAPRSRIGLSLSQSDLMKQVERIVKTKN
                     KEKDGQIVKSIVDGAQLLKEFESLARESKRSESKGYASLEEFGLSAPDSLAVDERAIY
                     DNDLITRLKAAVRYWKSGWIEMHDERGDDLDTDAVLESQPKPFFTDFKLSVKTKIALL
                     LDHSSSIEDEEIEYKKATIALCESLKFLGVSFAVYAFSTKERKVKCWIIKRPEEKWSS
                     INARNLAQIKASGGTPLAEIYNLLLPVMKMFRPDILITLTDGEPADYGAVRSAVTSYK
                     MMGIRMVGIGLGKNVNSAVNIGQNLKGLEFEKTLAVSRLQDIPRKVLSLLQI"
     gene            complement(1528..2190)
                     /gene="fsa"
                     /locus_tag="VNB68_02160"
     CDS             complement(1528..2190)
                     /gene="fsa"
                     /locus_tag="VNB68_02160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016832 - aldehyde-lyase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-6-phosphate aldolase"
                     /protein_id="HVD36186.1"
                     /translation="MKIFLDTANIESIKRYNDMGAVDGVTTNPTLLSKEKGHPAEIMR
                     EITKLIKGPVSLEVVGTETEGMIEEAHRLSKFGPNVVVKIPMIPEGLKAVRQLREEGI
                     KTNVTLIFSSNQALLAAKAGASYVSPFIGRIDDIGHDGMVIIKEIVQIFGNYKFDTEV
                     LVASVRHPVHVVEAAKIGAHIVTLPPEILGKMMLHPLTEKGLNSFLSDWEKITKQYQV
                     TF"
     gene            complement(2187..3161)
                     /locus_tag="VNB68_02165"
     CDS             complement(2187..3161)
                     /locus_tag="VNB68_02165"
                     /inference="COORDINATES: protein motif:HMM:NF014798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase family protein"
                     /protein_id="HVD36187.1"
                     /translation="MQLSSERKLADMRSAYSDALIELGLNDQNVVCVGADTTDSLKTK
                     KFGDKFPTRLYNVGIAEANLVSIAAGLSIAGKVVFASTYAAFLPGRCLDQIRNTICYP
                     FLNVKLVVSHAGLTVGPDGASHQQIEDISIMRTIPNMRVLVPCDAITVKHLIPLIAKT
                     PGPFYMRLARPSSNLVYDEHVNSFEIGKASVLRDGSDATIIACGLMVTEALKAAEILQ
                     RDYSLCCRVIDMYSIKPIDAQIIYQAAKETGLIITIEEHNVIGGLGSAVSEVTSENYP
                     VLVKRMGISDIFGESARDEEIEELLDKYGLTSNQIVEVVLETRRKTKK"
     gene            complement(3148..>3910)
                     /locus_tag="VNB68_02170"
     CDS             complement(3148..>3910)
                     /locus_tag="VNB68_02170"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: protein motif:HMM:NF004076.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004750 - D-ribulose-phosphate 3-epimerase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HVD36188.1"
                     /translation="RENYEEKVRKAERGGADLIHLDVMDGKFVPNTTFFANKIRDLRK
                     ITSLPFDAHLMFEEPLKHIQDYIEARCDIITIHSEVCNEGEFLDINENLLKAGISPGV
                     AINPDTKFPSWLYKHLDRIDVVIIMSVNPGFAGQKFIPDSLDKMAEISKELKKHNYHG
                     YIEADGGIDATNLQQVFDAGARIMVAGNAVYGSADINSNIIQLRHKANVALERKLLEI
                     ATIKDIRNDWMKTRKHILIPLANELGIEEELHAIK"
BASE COUNT         1139 a          797 c          765 g         1209 t
ORIGIN      
        1 gacgttggtc tggaaatccc aacactatcg tcacactgaa agatggcgcc ataccctttg
       61 tcaacattca aaacttcaca atctctttac cttccctgaa ttattatctg ggaactgaat
      121 ttcagaaata cagacaatgg agggcggcac tatggtatga atcaatgagg atcgcatatt
      181 ctaccaaagt tctcagctat gacctcgcct ttggatttat cctcaatact ttagaaagca
      241 agagaattga gattctgggt cttggggaat gggaaggtat ggaaaacgag gttatattca
      301 atgagggaat ttcgtggtta tctcgacctc tactaaatgc attatacggc aaacaaaaga
      361 tcattgaagc attttctcaa tacctgctga caggttacat aaaaggagaa ttatttggag
      421 gtgaattaga gcgcgtgcgc aaggctgttg attttgccaa tgccgtggtt aaagatgccc
      481 tttacaataa tcggagtact gattggatag agcaacaggt tccacaaatt gtcaaattac
      541 ttcagataaa tccattgata actattcctc taattgcccc cagatcgaga atcggcctct
      601 cgctttctca aagcgactta atgaaacaag tcgaaagaat agtcaagaca aaaaacaagg
      661 aaaaagatgg ccagattgtg aaatccatag tcgacggagc ccagctgctt aaggaatttg
      721 aaagtttagc acgagaaagt aagcgttcgg aaagtaaagg ttatgcgagc ttggaagaat
      781 ttggtttgtc tgcgccagat agtctagccg ttgatgagag agccatatac gataacgatc
      841 ttattacaag actgaaggct gcggtaagat attggaagag tggatggatt gaaatgcatg
      901 atgaaagagg agatgatttg gacactgatg cagtattgga atcacaaccc aaaccctttt
      961 tcaccgactt caaactctct gtcaaaacaa aaattgctct tttgctcgat cactccagta
     1021 gtatcgagga tgaagagatc gaatacaaaa aggctaccat agctttgtgt gaatctctaa
     1081 aattcctcgg ggttagtttt gccgtctacg cgttcagcac caaggagagg aaggttaaat
     1141 gttggatcat aaaacgacct gaagaaaaat ggtcctctat taatgcgcga aatttagctc
     1201 agatcaaggc aagtggaggg acacccctag cggagatcta taacctgtta ttgccagtaa
     1261 tgaaaatgtt caggccagat atcctgataa cacttactga tggagaaccg gccgattacg
     1321 gggcagtaag atcagcagtt accagttaca agatgatggg aatacgcatg gtggggatag
     1381 gactaggcaa aaatgtcaat agtgcagtga atattggaca aaacctaaaa ggtttggaat
     1441 ttgaaaaaac tctggctgta agcagactac aggatatccc ccgtaaggta ttgtctctgt
     1501 tacagattta acgatggatc gacctgttta gaaagtaact tgatattgtt tagtgatctt
     1561 ctcccagtca gatagaaagg aattcagccc cttttctgtt agcggatgca acatcatctt
     1621 acccagtatc tctggtggca aagttacaat gtgcgctcca atttttgcag cttctactac
     1681 atgaaccggg tgccttacgc ttgcgactag aacttctgtg tcaaatttat aattaccgaa
     1741 aatctggact atttctttga tgattaccat gccatcatgg ccaatgtcat caattcttcc
     1801 aataaacgga cttacataag aagctcctgc cttggctgca aggagagctt gatttgatga
     1861 aaagattagc gtaacatttg tcttaatgcc ctcttcacgt agctgtctaa ctgctttcag
     1921 tccctcaggg atcattggaa tttttacaac aacattagga ccaaacttcg ataatcgatg
     1981 tgcttcttct atcattcctt ccgtttctgt accaactact tcaaggctga caggaccctt
     2041 gataagcttc gtgatttctc tcatgatttc tgccggatgt cctttttctt tagacaaaag
     2101 agtaggattt gtagttactc cgtcaaccgc tcccatatca ttatatcgtt ttatggattc
     2161 gatatttgca gtatcaagaa agatcttcat ttctttgttt ttctcctcgt ttcaagaact
     2221 acttccacga tctgattgga agttaaaccg tatttatcca ggagttcctc tatttcctca
     2281 tcacgtgcag actcaccaaa tatatcagag atacccattc tctttaccag aacaggataa
     2341 ttttctgaag taacttctga aaccgcactg ccgagtccgc caattacatt atgttcctcg
     2401 atagttatta tgagtccagt ttcttttgcc gcttgatata tgatttgagc gtctattggt
     2461 ttgattgaat acatgtctat tactctacaa catagactgt aatctctttg aagtatttct
     2521 gcagccttga gcgcttctgt taccataaga ccacaagcaa taatagttgc gtcagagcca
     2581 tcccgaagaa cacttgcttt tccaatctca aaggaattca catgttcatc atacaccaag
     2641 ttgcttgacg gccgtgctag acgcatataa aaagggccgg gagttttagc aataagtggt
     2701 atcaaatgtt ttacggttat tgcatcacat ggtactagta ctctcatatt tggtattgtt
     2761 ctcataatag atatatcttc aatttgttga tgcgatgccc catcaggtcc gacagtgagt
     2821 cctgcgtgtg aaaccacgag tttaacatta agaaagggat agcatattgt attgcgaatt
     2881 tggtcaagac atcttccggg taaaaatgct gcatatgtac tggcaaacac tacttttcct
     2941 gcaatagaga ggccagccgc tatcgataca agattggcct cagctatgcc aacattatat
     3001 aatcttgttg gaaatttatc tccaaatttt tttgttttga gtgaatcagt agtatcggct
     3061 ccgacacaaa caacattctg atcatttagt ccaagttcaa ttagagcgtc actataggca
     3121 gatctcatgt ctgcaagctt cctttcacta cttaattgca tggagttcct cctctattcc
     3181 caactcattt gccaatggaa tcaatatatg tttacgtgtt ttcatccagt cattacgaat
     3241 atcctttata gttgcaattt ccaataattt tctttctagt gcaacatttg ccttatgtct
     3301 taattggatt atattggaat ttatatctgc agacccgtat actgcattcc ctgcaaccat
     3361 tatcctagct cccgcgtcaa aaacttgctg gaggtttgtt gcgtctatac caccgtccgc
     3421 ttcaatgtag ccatgataat tgtgcttttt caattcttta gatatttcgg ccattttgtc
     3481 aagactatcg gggatgaact tttgacctgc aaatcctgga ttaactgaca ttattattac
     3541 aacatctatt ctatcaagat gtttatacag ccatgatgga aattttgtat caggatttat
     3601 tgcgacgcca ggactaattc cagcttttag tagattttcg tttatgtcta gaaattcacc
     3661 ttcattacag acctcggaat ggatggttat tatgtcacag cgtgcttcga tgtaatcttg
     3721 aatatgtttc agtggttctt cgaacattaa gtgggcatca aaaggcagac tcgtaatttt
     3781 tcgaagatcc cttattttgt tagcaaaaaa tgttgtattt ggaacaaatt ttccatccat
     3841 aacatcaaga tgaatgagat cagcacctcc acgttctgcc ttacgtacct tttcttcata
     3901 attttcccgt
//
LOCUS       DATLQL010000210         1170 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_761688, whole genome shotgun sequence.
ACCESSION   DATLQL010000210 DATLQL010000000
VERSION     DATLQL010000210.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1170)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1170)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1170
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_761688"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            40..222
                     /locus_tag="VNB68_02175"
     CDS             40..222
                     /locus_tag="VNB68_02175"
                     /inference="COORDINATES: protein motif:HMM:NF016633.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S30e"
                     /protein_id="HVD36189.1"
                     /translation="MPTHGSLTKAGKVRGQTPKIQGRPRLSPVSKVRNRNNFVKRFEK
                     RRLPGQKKPERTGRRG"
     gene            complement(327..>1170)
                     /gene="nadC"
                     /locus_tag="VNB68_02180"
     CDS             complement(327..>1170)
                     /gene="nadC"
                     /locus_tag="VNB68_02180"
                     /EC_number="2.4.2.19"
                     /inference="COORDINATES: protein motif:HMM:TIGR00078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004514 - nicotinate-nucleotide
                     diphosphorylase (carboxylating) activity [Evidence IEA];
                     GO_process: GO:0019363 - pyridine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="carboxylating nicotinate-nucleotide
                     diphosphorylase"
                     /protein_id="HVD36190.1"
                     /translation="EDVGSGDITSESIISSNTSALAHIICKSKKKAIVSGLYECGILF
                     GEICKCDTKILVEDGSTVNEGNVVMQVRGKARSILRAERTALNIMMRMSGISTLTNEF
                     VCMVKDYDKSVRIACTRKTSPGMRIFDKKAVELGGGKSHRLRLDDMVLIKDNHLLLTG
                     SVERSIKIARKSVGSAIRIECEVGDPSQIISAIKRGADIVMLDNFSPEEVRESILKIT
                     KLGLRDKAMIEVSGGITLDNIKDYASAEPDIISIGALTHSAKAIDFSLEIIKVIGQSP
                     EPNK"
BASE COUNT          327 a          257 c          217 g          369 t
ORIGIN      
        1 gtatattagc gacttaaggc gtcattgtat ttaacaacaa tgccaacgca tggatcatta
       61 acaaaagctg ggaaagtaag aggtcagact cctaaaattc aaggaagacc tcggctgagt
      121 cctgtgtcca aggtacgtaa tagaaataat ttcgtgaaga gattcgagaa aagaagattg
      181 cctgggcaga agaaacctga gcgcacagga agacgcgggt aagtcgatcc gttacacatc
      241 aagacaccat ttcagaattt aggaatcgaa ttcaggtcta tgaatggaag aaaatggatg
      301 gtatcctgtt agtcttcctc tgattattat ttattcggtt cgggagattg tcctattacc
      361 tttattattt ccaaactaaa atctatggcc ttcgctgaat gagtaagtgc ccctattgag
      421 attatatctg gctctgctga cgcataatct ttgatattat caagggtaat tccgcctgaa
      481 acttcaatca ttgccttatc tcggagacct aactttgtaa ttttaagtat cgattccctc
      541 acttcttccg gggagaaatt atcaagcatc acgatatccg cccctctttt aatagctgaa
      601 atgatctgac ttggatcgcc tacctcgcac tctattctaa tggcagatcc cacgcttttc
      661 cttgctattt taatagatcg ttctactgag cctgtcagca gtaaatgatt atctttaatc
      721 aaaaccatat cgtccaggcg tagcctatgg ctttttcccc ctcccagttc aactgctttt
      781 ttatcaaaga tcctcatacc aggtgaggtt ttacgggtac aagcaatccg tactgatttg
      841 tcataatcct tcaccataca tacgaactca tttgttagag tagaaattcc actcattctc
      901 atcattatat tgagggcagt cctttctgcc cgtagtatag atcttgcttt acctctgact
      961 tgcattacaa catttccttc attgacggtc gatccatcct caactagaat tttggtatcg
     1021 cacttacaaa tctctccaaa taggattccg cactcgtaga ggccagaaac gattgctttt
     1081 tttttagatt tgcaaataat atgtgctaag gctgatgtat ttgaagagat gatactctcg
     1141 cttgtaatgt ctcctgagcc tacgtcttca
//
LOCUS       DATLQL010000211         1015 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_407471, whole genome shotgun sequence.
ACCESSION   DATLQL010000211 DATLQL010000000
VERSION     DATLQL010000211.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1015)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1015)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1015
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_407471"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1015)
                     /locus_tag="VNB68_02185"
     CDS             complement(<1..>1015)
                     /locus_tag="VNB68_02185"
                     /inference="COORDINATES: protein motif:HMM:NF012722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HVD36191.1"
                     /translation="VEAKNKFSHLYISFPIITKYNGSNDTTNLNNRESDFKGVVVATI
                     SLGDLGRFLQKELSPNFESTLGLIDRNGVILYSRNEEVVGRNYLAPEFQSLIPAEIKD
                     SYNKILENGLQGKSGSQDFLLRGNVTTLAYQPVVIDGRHIWTLYLSAPHNLASNVGFL
                     INQQKNFSTIVVIVIGSLAFGIAFLILSWNKRLEGAVTSRTLELKKANESLIESNMLL
                     ASANKQLEIHDRMQKEFINVAAHELRTPIMPILGEAELIEDKFNGKSSAEVDKDQIAV
                     IIRNAKRLDRLAADILDVTRIEGKSLQLNKERFNIDEILSQIVKETRRLIEKDPMRNG
                     KVDI"
BASE COUNT          284 a          199 c          187 g          345 t
ORIGIN      
        1 gatatcgacc tttccattcc tcattggatc tttttcgatt agacgtcgag tctcttttac
       61 aatctgtgac aatatttcat cgatgttaaa gcgttctttg tttaactgta atgactttcc
      121 ttcaatgcgg gtaacatcaa gtatgtctgc tgcaagtcga tcgagtctct tcgcattacg
      181 aattattaca gcaatttgat ccttgtcgac ttcagcagaa ctcttaccgt tgaatttgtc
      241 ctcaataagt tctgcttctc ctaggatagg cattatagga gttctaagct cgtgggccgc
      301 cacgttgata aattcctttt gcattctatc atgaatttcg agttgtttat tagctgaggc
      361 aagaagcata ttagactcta ttaaggattc atttgctttt tttaattcta atgtcctcga
      421 ggttacagct ccctccaatc gcttattcca agatagtatt aaaaaggcaa tcccaaatgc
      481 taatgaacca attacgatga ctactatagt gctaaagttt ttttgttgat tgattagaaa
      541 accaacattg ctagctaggt tgtgaggtgc gcttaaatac aatgtccaga tgtgtcttcc
      601 atctatgaca acaggctggt aagctaaggt agttacgtta ccacgaagga gaaaatcttg
      661 tgaccccgat ttgccctgta aaccattttc caatatttta ttgtaggaat ctttaatctc
      721 tgcaggtatc agagattgaa attccggggc aagataattc ctaccgacta cttcttcatt
      781 ccgtgaatat aatatgacac catttctatc tattaaaccc aaggtgcttt cgaaattcgg
      841 tgaaagctct ttttgtaaga aacgacccaa gtctccaaga cttatggtag caactactac
      901 ccctttgaag tcagattctc tattattaag attagtggtg tcgttggatc cgttgtactt
      961 ggtgatgatt ggaaaggaaa tataaagatg ggaaaattta ttcttagcct caaca
//
LOCUS       DATLQL010000212         1267 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_584628, whole genome shotgun sequence.
ACCESSION   DATLQL010000212 DATLQL010000000
VERSION     DATLQL010000212.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1267)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1267)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1267
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_584628"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1137
                     /locus_tag="VNB68_02190"
     CDS             <1..1137
                     /locus_tag="VNB68_02190"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HVD36192.1"
                     /translation="QKRDLLLSISMLAVTFSLFYLMNCNEVFATPIQNLGPNATTTNT
                     SNSERSQELFDKVKNSVVRIDTLVQYVNPRITVNDEPFLQEPSGSIGSGFVYDESGKI
                     VTNYHVVQGAQAILVKFLNGNGYKGTIVGVEPLIDLAVIQLDPSALYNEKIVPLPLAN
                     PSEIRIGTPVVAIGNPIGLTGSMTEGIISQVGRIQKGLFFPDSWVGDLIQTDAPITHG
                     NSGGPLLNFDGEVVGVNDRGVIADISSQSTEPNIGLAISSGTVKRVVDFIIANGSYDA
                     PYLGILVSDIPAFFPEKVGLSEAKGAYVLSVLPDSPSSRAKIESDNVIIKADDMLIKD
                     KADLINYIQTKSPGDNLALTIIDNSGVTKAYDLNLESMPVEFGG"
BASE COUNT          373 a          232 c          270 g          392 t
ORIGIN      
        1 cagaaaaggg atctcttgct ttccatttca atgcttgcgg taaccttctc tctgttttat
       61 cttatgaatt gcaacgaagt attcgctact cctattcaaa atttaggacc taatgctaca
      121 acaactaata cctcaaattc agaaaggtcc caggaattat ttgataaggt caagaattct
      181 gtagtaagaa tagacacact tgttcagtat gttaatcctc gtattaccgt gaatgatgaa
      241 ccattccttc aagaaccatc cggttcaatt ggatcaggat tcgtatatga cgagagtgga
      301 aagatcgtta ctaattatca tgtagtacag ggtgcccaag ccatattggt aaaatttctg
      361 aatggtaacg gttataaagg cactattgtt ggtgtagaac ctcttataga cctggccgtt
      421 attcaactgg acccttctgc cttatacaac gaaaagattg ttcccttgcc tctagctaat
      481 ccttcggaaa ttagaattgg aactccggtc gtggctatag ggaacccaat tggtctgaca
      541 ggatcaatga cggagggcat aattagtcag gtcggaagga ttcaaaaagg gttatttttt
      601 cctgattcct gggttggaga cttgattcag actgatgctc caattaccca tgggaattct
      661 ggtggtcctc tgttaaattt tgatggagag gttgttggtg taaacgatag aggggttatc
      721 gctgacatca gctctcagtc aacagaaccc aatattggac tagcaatatc atcaggaaca
      781 gtaaaacggg tagtagactt cataattgca aatggtagtt atgatgcccc atacctggga
      841 atacttgtct cagatattcc tgcgtttttc cctgaaaaag ttggtttaag tgaagctaag
      901 ggtgcctatg tattgtcggt cttgcctgac agtccatcct ccagagcgaa aatcgaatcc
      961 gataatgtta taataaaagc tgatgatatg ttaataaaag acaaggctga tctgataaat
     1021 tacatacaaa ctaagtctcc tggggataat cttgcgttaa caataattga taacagtgga
     1081 gtgaccaagg catatgattt gaatttggaa tctatgcctg tagaattcgg tggctagttc
     1141 cttggtgact aagacagaat agagtacaag atctctatca tctacggcgc tataatgtaa
     1201 gtcttttatt atgggttaca tcttttatca tatttcatgc ggaggtgttt tcttcatttc
     1261 gtgcaaa
//
LOCUS       DATLQL010000213         1032 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_762755, whole genome shotgun sequence.
ACCESSION   DATLQL010000213 DATLQL010000000
VERSION     DATLQL010000213.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1032)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1032)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1032
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_762755"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..571)
                     /locus_tag="VNB68_02195"
     CDS             complement(<1..571)
                     /locus_tag="VNB68_02195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HVD36193.1"
                     /translation="MKVSNRTSEVEYAIRDIIVHAREYEKSGRQIIYLNIGDPVKYDF
                     KTPIHIKQALIDSVSHDFNYYTDSEGLYELREAIVEKESRKGLSITAEDVLVTNGVSE
                     GLDMTMASIVEPNTEVLMPGPYYPPYASYVKFYGGRPVEFELTPDGKPDMEDLISKIT
                     PRTRALCIISPNNPTGEVFDHKSLKQLVDI"
     gene            776..850
                     /locus_tag="VNB68_02200"
     tRNA            776..850
                     /locus_tag="VNB68_02200"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:811..813,aa:Arg,seq:tcg)
BASE COUNT          284 a          216 c          192 g          340 t
ORIGIN      
        1 ctatatcgac tagctgttta agacttttgt gatcaaaaac ctcaccggtg ggattgtttg
       61 gactgattat gcataaagct cttgtacgcg gcgtgatctt tgatataagg tcttccatgt
      121 ctggcttacc gtcaggggtc agctcaaatt cgaccggtct gcccccgtag aatttgacat
      181 acgaggcata tggtggataa tatggtcccg gcatgagaac ctctgtattg ggttccacaa
      241 tagatgccat tgtcatatcc aaaccttctg aaacgccgtt ggttaccaac acgtcttcag
      301 ctgtaattga taaccccttc cgtgattctt tttcaactat ggcttcccga agttcataaa
      361 gtccctctga atccgtatag taattgaaat catgtgaaac tgaatctatt aacgcctgtt
      421 taatatgaat cggagtcttg aaatcatact ttactgggtc tcctatattc agataaatta
      481 tttgtcttcc agatttttca tattctctgg catgtacgat gatatcacga atagcgtatt
      541 cgacttcact tgtcctattg gatactttca attaatgtaa tctaaacaag aatctctgag
      601 ttaaattgtt atgcataaat tatgattatg ccggtagaaa tgtaatagca taccatgtta
      661 caataacatt ctactcactt ggattattga tcttaaatta aggatctgac atttgatcat
      721 ttgcattcca tcaggtcaat tgatatagaa cctctcttga atatcctcga tgaacgggct
      781 cgtagcgtag ccaggatatc gcggcggtct tcggaaccgc agatcgtggg atcgaagccc
      841 accgggcccg ctgactattc aaggaatcta gaatgaaaac aagggtattc tgtcagttca
      901 tccttgggag gaaaggattt acctatttaa ttgacctcgt tatccaatat ttcagtacta
      961 caaattccaa tagatcaagt attaattatc ttctttagat actcctactt ttcctctctt
     1021 ggaacctttc tt
//
LOCUS       DATLQL010000214         8385 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2181320, whole genome shotgun sequence.
ACCESSION   DATLQL010000214 DATLQL010000000
VERSION     DATLQL010000214.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 8385)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8385)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8385
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2181320"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(158..1057)
                     /locus_tag="VNB68_02205"
     CDS             complement(158..1057)
                     /locus_tag="VNB68_02205"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HVD36194.1"
                     /translation="MQFCLEVWGTSYGDIRDTCILAEDLGYYGFYYGESLAEIDMDCW
                     TIISNLSAITSKIRLGPVITYLFPKYRNIALLAKQAVTFQDMSGGRLAFRTGAGATLQ
                     YASQWWYPFGIDYPTIKERLDILDEGLQVLQKFWNSPSVFFAGDYFKVNGGTLTKTNT
                     PIPITIAAKSEKMMAIAAKYADVWEASYISPDKFKLLFEKFMEISDIVVRRSNKITSS
                     IELDVIIAESDSELAYKEKLFMMDRGPSVYNQILQNGLVGTPDRVRERIKEYVDAGVE
                     QFFLAFHDPFNHHDLELFMDTVK"
     gene            1827..2240
                     /locus_tag="VNB68_02210"
     CDS             1827..2240
                     /locus_tag="VNB68_02210"
                     /inference="COORDINATES: protein motif:HMM:NF026244.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lsm family RNA-binding protein"
                     /protein_id="HVD36195.1"
                     /translation="MSALTNRKFNEEMIQFVGKKVSVETSDKKNYNGIMSAIDEKLDL
                     VLDNVEGQGILKLIINGAFVKEVKLLEKPFDLKGLAERLARVFPGLVRVRDDVGAIIV
                     MEKIKVTQTGVEEGAGLAADRVKAVYDEFMRDSKK"
     gene            2410..3963
                     /gene="tgtA"
                     /locus_tag="VNB68_02215"
     CDS             2410..3963
                     /gene="tgtA"
                     /locus_tag="VNB68_02215"
                     /EC_number="2.4.2.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016763 - pentosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(15) transglycosylase TgtA"
                     /protein_id="HVD36196.1"
                     /translation="MSFEIRYSDLAGRIGKLSTPSGVIETPAFIPVIHPIKQSISPQF
                     IKSLGFDAVITNAYIALGHYGKEAVEKGIHKIIDFDGIVMTDSGGYQVLEYGSIDVKP
                     TDIAEFERDIRSDICVPLDKPTGYGLEHSLANRYVEETIENTQQTIDRIGDPDNPRGA
                     IWVGPVQGAEHLDLVKKSADLLDKMHFQMFALGSPVQLMQAYEFAILADIIATVKRTI
                     PSKPIHLFGAGHPLTIPLAVALGCDTFDSASYVLYARDNRYMHQNGTSRLEDLSYFSC
                     QCPVCTSYTPTELLGTPWDRRIDELAKHNLYVLRAEVLAVKQAIRDGRLWEYVTQKAR
                     AHPKLTEAVMNFSRYEFLDVGTALFKKKAIFFNGPQDQYRPEALRFRKMITQFKTRKK
                     GHLILFPEGQVSPFYTSQSFLKLSKKFPDDQICTYNPYIGIVPAEVSDIFPAAHNIVS
                     QDKLFIHKVGDFPTFIESLENFLVFNKFKNITIVADSFMKEVIKEYKPENDRLVKVLD
                     YHFEVIDSM"
     gene            4309..4713
                     /locus_tag="VNB68_02220"
     CDS             4309..4713
                     /locus_tag="VNB68_02220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36197.1"
                     /translation="MPIDYEFLYSFSEQLLRFEKSIRWIGIANKYGVLLNVEYRDNLT
                     PFMTEEENEEYAANAVKRYKTRLKFQTKIGMLNYAFGRYEKISRVTIPINQDYYLLLT
                     LDADEKNYDDLIMNKIIPFINKYKEKFILEEE"
     gene            complement(4750..6102)
                     /locus_tag="VNB68_02225"
     CDS             complement(4750..6102)
                     /locus_tag="VNB68_02225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HVD36198.1"
                     /translation="MAKIEFVIPSVLTKGAGEKKIPLEATNLEDAFTKISDQMGEDFK
                     RRVLDLNGKPRSLINIYINGKNMRFSSDGMATVLHENDSIYILPAVAGGSELKTEDLQ
                     RYSRQIMLDEIGFVGMEKIRKARVCVVGVGGIGNPVVTQLTAMGVGTIKIVDRDVVEI
                     SNLHRQHLYTEDDIGRVKVEAARERLRQINPSVEIEALPISVTRYNAEKIIDGFDIVV
                     DALDSIDARYALNDACIKLNIPLIYAGALGMLGSVCTIIPNESACLRCMFPALAEDDM
                     PTCSTEGVHPSILYLVGGIQVSEVVKIITGENPTLVNKLLYVDLNDLCLEKIQMYRHD
                     ECPSCGSKRKLEDSVLRQQLLIEELCGRDRGKRTYTVTPSEVSSPLSLLGVERNAEQL
                     GYKVKTRGKLGLTAISNGSEREQLSVSFMTSGAATIVGAKDQQDALSIYKRFVNGSNV
                     "
     gene            complement(6135..7361)
                     /gene="thrC"
                     /locus_tag="VNB68_02230"
     CDS             complement(6135..7361)
                     /gene="thrC"
                     /locus_tag="VNB68_02230"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004795 - threonine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HVD36199.1"
                     /translation="MGVIQSLKCRECSAEYEPQFRYICEECFGPLDVIYNFPSDLNKE
                     VFSSRQEKSYWRYFELLPISNKNNIINLHAGFTPLQEADELGKQIGGLKNLFIKNDSV
                     NPTFSFKDRPAGVAVSRAKETKLRAVGCASTGNLASATAAHAAKARLPCYIFAPSDIE
                     SPKISQALAYGAEFVAVQGTYDDANRVASIIGNSKGIGIVNINMRPYYVEGSKTLAFE
                     VAEQLNWQVPDHLIIPVGSGAMLNAICKGFEELHEFGFVEDISNLRITAAQPHGCAPI
                     VNAFKRHDSDIVPIERPETIAKSLAIGDPGDGMYVLRRLKQYRGVAEEATDAEIVDGI
                     LMLARTEGIFTEPAGGVSVAVLKKLVEDGTIECDEKVVCYVTGNGLKSPEAIADKLPK
                     LNVVKPDIQLVSAMIT"
     gene            complement(7543..7881)
                     /gene="hisI"
                     /locus_tag="VNB68_02235"
     CDS             complement(7543..7881)
                     /gene="hisI"
                     /locus_tag="VNB68_02235"
                     /EC_number="3.5.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004635 - phosphoribosyl-AMP
                     cyclohydrolase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyl-AMP cyclohydrolase"
                     /protein_id="HVD36200.1"
                     /translation="MMHGTKSPIELDFVKRKGLVPVIVQDLKTKDVLMLAYANKEALK
                     NTIETGKAWFWSTSNNRLWMKGEESGNIQLVREILVDCDSDALIYLVDSSNPACHTGK
                     RSCFHNKLVV"
     gene            8003..>8385
                     /locus_tag="VNB68_02240"
     CDS             8003..>8385
                     /locus_tag="VNB68_02240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36201.1"
                     /translation="MKGYYKIAISLLMIGGLVLVGSQGLLFANHGQEIVISVNNAHFT
                     SLSGSGSHQVKVVANYSVSNSSMVGQKINAVMKVYSPNGTLLKTSSFPSGFTVNKTGT
                     QQLLTNLLNSTVQNITAVTTFTNLG"
BASE COUNT         2550 a         1689 c         1562 g         2584 t
ORIGIN      
        1 ttataccata acttattctc acttcaggat acattattat gcacaattct cacttcagga
       61 tacattacta tgcacataat ttatttgtac tttataggat gtgaagtgtt caactgaatc
      121 aatctttccc acaattcaga ccatggatta caacatatca ttttaccgta tccataaata
      181 attcaaggtc atgatgattg aatggatcat gaaaagcaag aaagaattgt tctacccctg
      241 cgtctacata ttccttaatt ctttctctta ctctgtccgg tgtacctacc aacccatttt
      301 gcaaaatctg gttgtaaaca cttggtcctc tatccatcat aaataatttt tccttatagg
      361 ccagctccga atcagactcc gctattataa catctagttc gatagagctt gttattttat
      421 tgcttcttct cacgacaata tcggaaatct ccatgaattt ctcaaatagg agtttgaact
      481 tatcaggcga gatataagag gcttcccaga catccgcgta ttttgcggcg atagccatca
      541 ttttttcact ctttgcggcg atggtgattg gaattggcgt attggtcttt gtcagagtac
      601 caccattgac cttaaaataa tcgccggcaa agaaaactga aggactgttc cagaattttt
      661 gaagaacctg aagtccttca tcaagaatat caagtcgttc cttaattgta ggataatcaa
      721 tgccaaatgg ataccaccac tgagatgcat attgcaaagt cgcaccagcg cctgttctaa
      781 atgcaagcct tccccccgac atgtcctgaa aagtcacagc ctgttttgca agaagagcaa
      841 tgtttctata ttttggaaat agataggtta tcactggtcc taatcgtatt ttactggtta
      901 ttgcagataa gttagatatg attgtccaac aatccatatc aatttcagct agagattccc
      961 cataatagaa tccataataa cctagatctt ctgccaaaat gcaagtgtct cttatatctc
     1021 cataagaagt tccccatacc tcaagacaga attgcatgtc atttaggtag aatggaaagg
     1081 attattatca ttttgttgga ccgaatacgt atagtctctg aatttacggg tacatattat
     1141 ttagttaaat tcctatgatg gtctccgtct aattgagttg aatacggcag attatcagct
     1201 actattccat atccatagtt tttatctaac tttcattatc gactaaggta tatcatcgag
     1261 tcagactgaa ttaaaagagt ttgaatggta tctacgggat catctattta gaaaccaaaa
     1321 caaggcaata tctacatttg agctaaattc gttgccgcag acaatgatag acacgtacct
     1381 aagatatcga aatgctgatt tggatcaaat cttggtcctt ctcaattctt ccgtagaaaa
     1441 tcttgtatca agaaatgtat tgaagcataa caaagattct gttgaatcga ctgggaagat
     1501 ctcaaggatg caatgtgccc ggtgtctcta catctgttac gtttctgaaa atgaacctac
     1561 ctcgtgtttt agatgtgata gtagtgaatt acacactttt cccaagaaaa aggaataatt
     1621 ccatacgagg taaatatcct agtaatggga aggcgatgac gtacatgcaa ttagcatatt
     1681 gtactattca aaacaatatt tcttttcaaa tattatcttg gtggctaatt acgatgcaag
     1741 ggctaaatgc tgctaattgg cttggatccg gacatccgct attgaaactc atatatatag
     1801 acctgcggta tcttccgtga aagagaatgt cagctttaac taatcgaaaa tttaatgaag
     1861 aaatgattca atttgttggg aaaaaagtct ctgtcgagac atcggacaaa aaaaattata
     1921 atggtatcat gtctgccatt gatgaaaaac ttgatctagt tttagacaat gttgaaggtc
     1981 aagggatatt aaaactaatt atcaatggtg catttgtaaa agaagtaaag ttactcgaaa
     2041 aacccttcga tttaaaaggc cttgctgaaa ggctggcaag ggttttccca ggtctggtca
     2101 gggttagaga tgacgtagga gctattatcg ttatggaaaa aataaaggtt acccaaactg
     2161 gagtagagga aggtgccggt cttgctgcag accgagtaaa ggccgtttat gacgagttca
     2221 tgagagattc gaagaaataa tcatctacct ttttcaatcc tccctttgtt atttattggt
     2281 gtccactaaa gcatgattaa tgaaacggaa gcctgtagcg tacattaaga attaattagt
     2341 gcctactcac tacccacgtg ttatgtttgc ttgtatcttt ggatctgagt ggagttctaa
     2401 ctatcaaatt tgtcatttga gataagatat tctgatctag ccggacgtat tggaaagcta
     2461 tccactccaa gtggagtgat cgaaactcca gccttcatac ccgtaatcca tcctataaaa
     2521 cagtctatca gcccccagtt catcaagagc cttggttttg acgcggtgat aacaaatgcg
     2581 tatattgcac ttggccatta tggtaaagaa gcagtagaaa aagggatcca caagataatt
     2641 gattttgatg gtattgttat gacagattcc ggtgggtacc aagtgcttga gtatggttcg
     2701 atcgatgtta agcctacaga tatagctgaa tttgagagag atattcgtag cgatatttgt
     2761 gtccctttag acaaaccaac agggtatggc cttgaacata gtttagcaaa tagatatgtt
     2821 gaagaaacaa tcgagaatac gcaacagacc atagacagga ttggagatcc tgacaatcct
     2881 agaggagcaa tttgggttgg acctgtgcag ggtgcagagc accttgactt ggtcaaaaag
     2941 tctgcggatt tgcttgacaa aatgcacttt caaatgttcg cccttgggag tcccgttcaa
     3001 ttaatgcaag catatgaatt tgcaattctg gcagacatta tagcaacagt caagagaacg
     3061 ataccttcca agccgataca tctttttggg gcaggtcatc ccctcacaat accattggca
     3121 gtagcattag gatgtgacac ctttgactcg gcatcttatg tattatatgc gagggacaac
     3181 aggtacatgc accaaaatgg cacttctcga ttagaagatt tatcttattt ttcatgtcag
     3241 tgtcctgtct gcacctccta tactccaaca gagctcctgg gaacaccttg ggataggagg
     3301 atagatgaac tggcaaaaca taatctctat gtattaagag ctgaggtctt ggcagtaaag
     3361 caggcgataa gagatgggag attgtgggag tatgttactc aaaaggcacg agcccatcca
     3421 aagctgacag aggcggttat gaatttctca aggtatgagt ttctagatgt aggaacagct
     3481 cttttcaaaa agaaggcaat tttttttaat ggacctcaag accaatatag acccgaagct
     3541 ctcagattta gaaaaatgat aactcaattc aaaacccgga aaaaagggca cctcatatta
     3601 tttccagagg ggcaggtttc ccctttctat acttcgcaat ccttcctgaa actctcaaag
     3661 aaatttcccg acgatcagat atgtacatac aatccatata ttgggatagt accagcggaa
     3721 gtttcggaca tttttcccgc cgctcataat atagtgtccc aagataaact attcatacat
     3781 aaagtaggtg actttccgac attcatagaa tcacttgaga attttcttgt gtttaataaa
     3841 ttcaaaaata tcacaatagt ggctgattct ttcatgaagg aggtaatcaa ggagtataaa
     3901 cctgaaaatg atcggttggt aaaagttttg gattatcatt tcgaggtaat agatagtatg
     3961 tgattatact ctactcaaaa ccctaccttt gagttcactc tggcatatgg aaacagtcga
     4021 ggttctttag tgaatggcaa attgacgtgg agtaaaaata aaactgttcc ttaaatgaat
     4081 gcattccctg ttaggggttt gagggaaaaa cttttagatt ttcttcattg ataacaccaa
     4141 tgataacaaa aaaacgcgat tttcatttaa ttgtttttca cttacagtta ttttcctcac
     4201 agatcttgca ttccatagtt gttatatcaa acaaaataga tgcacgtcta taatgtaaac
     4261 ttgatatacc ttttattact acctttaaca aattgagagt gacggtaaat gcccatagat
     4321 tatgagtttc tttactcttt cagtgaacaa ctacttcgtt ttgagaaatc tattagatgg
     4381 attggtatag caaacaagta cggggtcttg ctcaatgtcg aatatcgtga taatctaact
     4441 ccattcatga ctgaggaaga aaatgaagaa tatgcggcta atgccgtaaa aaggtacaag
     4501 acgagattaa aatttcagac aaagattgga atgttaaatt atgcctttgg gagatatgag
     4561 aagattagta gagtaaccat ccctataaat caagattact atttactttt gactcttgat
     4621 gcggatgaaa aaaactatga cgatctaatt atgaacaaga taattccatt cattaataaa
     4681 tataaggaaa aatttatcct tgaagaggaa tagggacagg aagagcgcta tcaacttctt
     4741 aattcttcgt tatacgttcg atccgtttac aaatcttttg taaatagaga gtgcatcttg
     4801 ttgatctttt gccccaacta ttgtggcagc accacttgtc ataaagctta cagataactg
     4861 ttctcgttct gacccattac ttatggccgt caaaccaagt ttgccccgag tttttacttt
     4921 ataccctagc tgttctgcat ttctttcgac acccaacagg ctgagaggag atgacacctc
     4981 agatggagta actgtgtatg ttctcttgcc tctgtctcta ccacacagtt cttcaatcaa
     5041 aagctgttga cgcagaacag aatcttccaa ttttcttttt gatccacaag acgggcattc
     5101 atcgtgtcgg tacatctgaa ttttttccaa gcagagatca ttcaaatcaa catacagcaa
     5161 cttattgaca agtgttggat tttctcccgt aatgatcttt accacttcag agacctggat
     5221 gcctccaacc aagtacaata tggatggatg tacaccttcc gtactgcatg ttggcatatc
     5281 atcttctgcc aatgctggga acatacacct caagcatgca gattcatttg gtattatggt
     5341 acagaccgat cccaacatcc ctagagcacc agcgtaaatc agcggaatat ttagcttaat
     5401 acaagcatca tttaatgcat aacgtgcatc aatactgtca agtgcatcca caacgatatc
     5461 gaaaccatca ataattttct cagcattata tctagtaact gagataggaa gtgcctcgat
     5521 ctctacgctt ggattaatct gtcttaatcg ttctcgagct gcctctacct ttactcgccc
     5581 tatatcgtcc tcagtataga gatgctgacg gtgaagatta gaaatctcga ctacatctcg
     5641 gtcaacaatc tttattgttc caacacccat tgcggtaagt tgagtgacga ccggattacc
     5701 aattcctcca acaccgacta cgcagaccct tgccttccga attttttcca ttccaacaaa
     5761 tccgatttcg tcgagcatta tttgcctcga atatcgctgt aaatcttcag ttttgagttc
     5821 tgaaccgccg gctactgctg gaagaatgta gattgaatca ttttcgtgaa gaacggtagc
     5881 cataccatca ctgctaaatc gcatattctt cccattgatg tagatgttaa ttagagatcg
     5941 aggttttccg tttaaatcta atactcttcg cttaaaatct tcacccattt ggtccgaaat
     6001 ctttgtgaag gcatcttcaa gatttgttgc ttccagcgga atctttttct ctccagcgcc
     6061 ttttgtcagt actgaaggaa ttacaaattc aatttttgcc aatctctgtc accacatatg
     6121 atgcatatca ataactatgt aatcattgcc gagaccaact gaatgtctgg ttttacgaca
     6181 ttgagcttcg ggagtttgtc tgctattgct tctggactct ttaatccgtt gccggtaacg
     6241 tagcaaacta ccttttcatc gcattctatg gtcccatctt cgactaactt tttaagtacg
     6301 gccactgaaa caccgcctgc tggctccgta aagatcccct ccgttctagc aagcatcaaa
     6361 attccatcta ctatttcagc atctgtggct tcttcagcta cacccctgta ctgcttcaat
     6421 cttctcaata catacatacc atcccctgga tcgcctatcg ctaaactttt agctattgtc
     6481 tctggtcttt caataggcac aatatcagaa tcgtgtcttt taaaagcatt aactattgga
     6541 gcacagccat gaggttgtgc cgcagtgatg cgcaggttag agatgtcctc tacaaaacca
     6601 aattcatgta gctcctcaaa tcccttacag atagcattta acatagctcc gcttcctacg
     6661 gggattatca aatgatccgg aacttgccag ttgagttgtt ctgccacttc gaaagcaagt
     6721 gtttttgaac cttcgacgta gtatggccgc atattaatat ttacaattcc gatacccttt
     6781 gaattcccaa ttattgaggc taccctgttc gcgtcatcat aagttccttg tactgcaaca
     6841 aactccgcac catatgctag agcttgtgat atcttagggc tctcaatatc agagggagca
     6901 aaaatataac aaggcaaacg agcctttgca gcgtgagctg cagttgcaga agctagattg
     6961 ccggtggatg cacatcctac tgctcttaat ttagtttctt ttgccctaga aacagccaca
     7021 cctgctggtc tatccttaaa tgaaaatgtt ggattgactg agtcattttt gatgaataaa
     7081 ttcttcagtc cgccaatttg cttgccaagt tcgtctgcct cttgcagagg tgtaaagcct
     7141 gcatgaagat tgatgatgtt attcttgtta gaaataggca agagttcgaa ataacgccaa
     7201 tacgacttct cctgcctaga tgaaaaaact tccttattca aatcagaagg aaaattgtat
     7261 ataacatcaa gaggcccaaa acactcttca catatgtatc taaattgtgg ttcgtactct
     7321 gcagaacatt ctctgcactt taaagattgg attactccca tagttaacga tcaacattct
     7381 tgtatcgtga taaataagag tctctaatag gaaattaagt aatacttaac ttttagaagt
     7441 caaaatatgt atactactga ataacaatct tgagtgaaaa tatctactta tattaataaa
     7501 ctcataatta ttgcaaaatt tgtagctgaa aatcaggaaa tctcatacta ccaacttgtt
     7561 gtgaaagcag gatcgtttcc ccgtgtgaca agcaggattg ctggagtcaa ccagataaat
     7621 aagtgcgtct gaatcacaat ctacaagtat ctctcttact agctggatat ttccggactc
     7681 ctcgcctttc atccacaatc tattattcga agtgctccag aaccaggctt tgcctgtctc
     7741 aatcgtattt ttgagagctt ctttatttgc ataggcgagc atcagaacat cctttgtctt
     7801 tagatcttga actatcacgg gaactaatcc tttccgtttt acaaaatcaa gttcaattgg
     7861 cgatttagtc ccatgcatca ttaatgacta taagtgatgc tgagtagaaa ataattctat
     7921 tggttataga aaatttgaga atcgaatcta atacgcataa ataaggataa ttggcatgcg
     7981 tatttatgga gaataatttg gcatgaaggg atattacaaa attgcgatat cacttctaat
     8041 gattggtggc ttggttttgg taggcagcca agggctcctg tttgcgaatc atggacagga
     8101 gattgttata tctgtgaata atgcccattt tacttccctc tctggaagcg gcagtcatca
     8161 agttaaagtt gtagctaatt actctgtatc caactcttcg atggtaggtc agaagatcaa
     8221 tgctgttatg aaggtatatt caccaaatgg aacattattg aagacctcat cgtttccatc
     8281 tggatttaca gtcaacaaga caggtaccca gcaactttta accaacttac tgaattcaac
     8341 agttcagaat attacggctg tgaccacttt tacgaacttg ggcaa
//
LOCUS       DATLQL010000215         1313 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_407867, whole genome shotgun sequence.
ACCESSION   DATLQL010000215 DATLQL010000000
VERSION     DATLQL010000215.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1313)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1313)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1313
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_407867"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            294..725
                     /locus_tag="VNB68_02245"
     CDS             294..725
                     /locus_tag="VNB68_02245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2 subunit beta"
                     /protein_id="HVD36202.1"
                     /translation="MADQTRSEYEALLKRLEGRISDTTKKEVSRLEVPTPQIIWVGQR
                     TIFRNFMEFPKSLRREPEKLLLYLNKELASAGYIAGERVIFLGRKVHSSFGALIDRYI
                     KDYVICPVCGSPDTRTEKNKKLGFLICEACGARSSIKGNYA"
     gene            991..1215
                     /locus_tag="VNB68_02250"
     CDS             991..1215
                     /locus_tag="VNB68_02250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36203.1"
                     /translation="MSLHHEAQEAPTQNTPNSFSIGQSWGALRKAWKGYRIAKVQGDN
                     TKMTEYATKIRKIQGELGISVASFPHLGIG"
BASE COUNT          424 a          237 c          274 g          378 t
ORIGIN      
        1 gttgatcaaa ctttgaataa agaatagaga aaacgctcac aggaggatag gctctcgttt
       61 caaggggcta ttgattttaa aagctgggca cttattctta tcgacgaatc aaacatttta
      121 gacaaatcac acggatagct atacgtctct aacatggagg gtcgaagtta tttaattgcc
      181 atgggtgact acattttata ctatagaaag gctgatatat ttgtaatctc agctgactct
      241 atagatctgt ctcattcata atatacatta accagatcca ccattacgag tgtgtggcag
      301 atcaaacaag gtcagagtat gaggcgctat taaaacgtct ggaaggcaga atcagcgata
      361 ctactaaaaa ggaagtatct aggttagaag ttcctactcc gcagattatt tgggttggac
      421 aacgtacaat attcaggaac tttatggaat ttcccaaatc cttgagaaga gagccagaga
      481 aacttttgct ctacctaaac aaagaacttg cctcggcagg ctatattgct ggagagcgtg
      541 tgatctttct tgggcgtaag gtacattcct ctttcggtgc tttgattgac agatatatca
      601 aggattatgt aatctgtcct gtttgtggaa gtccggacac aagaactgaa aaaaataaaa
      661 aactgggttt tcttatatgt gaagcttgcg gcgcaaggtc ctctattaag gggaattatg
      721 cctaatttag aagataacca aattatagtc taagaatgca ttagtattgt ctctactacc
      781 atactagggc cagttataga gcaagaatga taatagaaca attgatagtc ctatttgata
      841 gatgttgttt tctctagaaa cttgcaagga tcacggaggt atttccaatg accgcatact
      901 ataagctaag tgtttttact tgggaattcg ataatattaa caatgggttc taagtagcaa
      961 cataggttct caaaagatat gacagcaata atgtcgcttc atcatgaagc gcaagaagca
     1021 ccaactcaaa atacaccaaa tagtttctca attggtcaga gttggggagc acttagaaaa
     1081 gcatggaaag ggtaccgaat tgccaaagtt cagggtgaca ataccaagat gaccgaatat
     1141 gccactaaaa ttaggaagat ccaaggggag ctaggtataa gtgtggcatc atttccgcat
     1201 ctcggaatag gctaagccca gaacatccct tttttatcct tttaatgctg cgccactcag
     1261 tatcctaatc gttctttgac ttttgcctct aactatcctt aggaaaggat att
//
LOCUS       DATLQL010000216         1292 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1649997, whole genome shotgun sequence.
ACCESSION   DATLQL010000216 DATLQL010000000
VERSION     DATLQL010000216.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1292)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1292)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1292
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1649997"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..651
                     /locus_tag="VNB68_02255"
     CDS             <1..651
                     /locus_tag="VNB68_02255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36204.1"
                     /translation="NLKILSNYATERIVTSKATFRKEELGGTEVVDRIFSAFAFAFSD
                     PHRAVTHNKGIMNGIDAVSIATGQDFRAIEAAAHAYASRDGKYRSLSIFAKSSKGDLT
                     ASIEIPLSVGIVGGISTVHPTAKMSLKILGVKSASELACVIASVGLAQNFAAIRALST
                     EGIQKGHMRLHAKNIAVAAGAMGKLVDIVAETMYSQSNISIDNARAILHELQLKSS"
     gene            784..>1292
                     /gene="hisG"
                     /locus_tag="VNB68_02260"
     CDS             784..>1292
                     /gene="hisG"
                     /locus_tag="VNB68_02260"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003879 - ATP phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HVD36205.1"
                     /translation="MAIVKFAIPKGSIEDATFKIIEEAWQTVKGRGRTYRIKLSDPEI
                     EVKILRPQEIPTYVQEGFYDIGITGKDWIVEASADVKILLDLEYGQVNQVIAIPENLE
                     YNNLTELIEGFAKQKRALRISSEYLTTTSSLIRSNKAYQKYYGDARPMIITPWLRVGE
                     NKMVEIFLS"
BASE COUNT          439 a          231 c          274 g          348 t
ORIGIN      
        1 aacctcaaaa tactttccaa ttatgcaacg gagagaattg taactagcaa ggccactttt
       61 agaaaggaag agcttggcgg cactgaggta gttgacagga tattctctgc gtttgctttt
      121 gcgttttctg atcctcatag ggcggtaact cataataaag ggataatgaa tggaatagac
      181 gcggtttcaa ttgcaacagg ccaggatttt cgtgccattg aggcagctgc tcatgcgtat
      241 gcctccagag atggcaaata ccggtcactt agtatttttg caaagtcatc caaaggtgat
      301 ctaacagcta gcattgaaat tccattgtca gttggaatcg taggtggaat atctacggta
      361 catcccacag caaagatgag tttgaaaatt ttgggagtaa aatcagcatc agaacttgct
      421 tgtgttattg catctgttgg acttgcacaa aactttgccg caattagagc attatccaca
      481 gaaggaattc aaaaggggca tatgagatta cacgcaaaga atatagctgt tgcggcaggt
      541 gccatgggaa aactagttga tatcgtagct gaaaccatgt attcacaatc aaacatatcg
      601 atagacaatg ccagggcgat tctacatgag ctgcaattaa agagcagttg agtttacaat
      661 gttctataaa tatcttgaat aatctttcat agtaaatttc aacataatta tcaaatcaaa
      721 tattctctgc aaataatttt tcaatagaaa tatatcccat taagaagata cttcgattat
      781 cagatggcaa tagtaaaatt cgcgatacca aaaggcagta tcgaagatgc aacctttaaa
      841 atcattgaag aagcatggca gacagtaaaa ggtcgtggta ggacgtacag aatcaagcta
      901 agcgaccctg aaatagaagt aaaaatcttg cgaccccagg aaatacccac atatgtgcag
      961 gaaggttttt acgatatcgg aattactggc aaagattgga ttgttgaggc tagcgcggat
     1021 gtcaagattc tactggatct agaatacggt caggtaaatc aggtgatagc aattccagaa
     1081 aatctagaat acaacaattt aactgagttg atagaaggtt tcgcaaaaca gaaacgggcg
     1141 ctccgaattt catcagagta cctaactacc acttctagtc taatacgttc taacaaagca
     1201 tatcaaaaat actacggtga tgcaaggcca atgataatta caccatggtt gagggttggc
     1261 gaaaataaga tggttgaaat ctttctttcc tt
//
LOCUS       DATLQL010000217         5160 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1474241, whole genome shotgun sequence.
ACCESSION   DATLQL010000217 DATLQL010000000
VERSION     DATLQL010000217.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5160)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5160)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5160
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1474241"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..232)
                     /locus_tag="VNB68_02265"
     CDS             complement(<1..232)
                     /locus_tag="VNB68_02265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36206.1"
                     /translation="MAKSGKLIVRLNPSYDLSIIGQSVVDKKGTRIGKIIELLGPVKS
                     PLASALPIADVTKMMSGMAVFQTEIITRHGDEF"
     gene            complement(386..691)
                     /locus_tag="VNB68_02270"
     CDS             complement(386..691)
                     /locus_tag="VNB68_02270"
                     /inference="COORDINATES: protein motif:HMM:NF014032.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0048500 - signal recognition particle
                     [Evidence IEA];
                     GO_function: GO:0008312 - 7S RNA binding [Evidence IEA];
                     GO_process: GO:0006614 - SRP-dependent cotranslational
                     protein targeting to membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle subunit SRP19/SEC65
                     family protein"
                     /protein_id="HVD36207.1"
                     /translation="MKDYGHVIIWLDYFNKNISKRKGRRISKKLAIYDPTLEELSKAS
                     KDLNLAISDEDINNQARYPRRPYVRSGYLMLPKSEKKSNLLNQIARKLQERRNTSKN"
     gene            complement(774..1160)
                     /locus_tag="VNB68_02275"
     CDS             complement(774..1160)
                     /locus_tag="VNB68_02275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8e"
                     /protein_id="HVD36208.1"
                     /translation="MRKSIETLSGRKLTGGRKMVARGRRKYEIDRYPSEPVVGTQKTI
                     FRRVRGGNRKISFKSVEFANISDPVEKKTTKSKILRVTKNPTNKDFERRGVVTKGAII
                     DTDLGSARVVSRPGQHGIVNAILIKR"
     gene            complement(1228..1740)
                     /gene="scpB"
                     /locus_tag="VNB68_02280"
     CDS             complement(1228..1740)
                     /gene="scpB"
                     /locus_tag="VNB68_02280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMC-Scp complex subunit ScpB"
                     /protein_id="HVD36209.1"
                     /translation="MAKKYPQDETMARLEVALYSAGRPVSLEELMKATGSGSKEITLR
                     TVRDLVQRTRGTFKALEISELQHETFVFQVKPSYTPLVRRFAQQPIIPNSALKTLSYI
                     AYEQPITSKRLVQIRGSQVYSHLKELRAHSFIEYENLGRTKIYRTTRKFQEYFGINDL
                     IALKNSLVQK"
     gene            complement(1772..2461)
                     /locus_tag="VNB68_02285"
     CDS             complement(1772..2461)
                     /locus_tag="VNB68_02285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36210.1"
                     /translation="MEDKQEETNHSISKPPLDLLFNPSLLSRKDVWDINVTTLLEMLL
                     RILSESGRRDLRICGVAALSSSMIYRLKVESIFRLEKIAMMKRGIEVTESNAEVPMLK
                     PIEIPFRIESTYPVTLEELLHVLENMIMDLANPRKQRKQLNLEAVETFDFNDYLVKFE
                     QIVKSYEEMIFDIVSADGFVLFRKFTERMNSIEIVRCFIAVLYLAMKGLVIIDQEDYG
                     DFMISYSKKSD"
     gene            2566..2853
                     /locus_tag="VNB68_02290"
     CDS             2566..2853
                     /locus_tag="VNB68_02290"
                     /inference="COORDINATES: protein motif:HMM:NF015632.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0147 family protein"
                     /protein_id="HVD36211.1"
                     /translation="MASKKELREKENQGRLSNAIITLDTIARNNNIQRNIRNMIREVM
                     TAVKDEKNGSVSVRAANAISMLDNVTQNPQMQSHIRTMIWQVVSTLESIRE"
     gene            complement(3055..>5160)
                     /locus_tag="VNB68_02295"
     CDS             complement(3055..>5160)
                     /locus_tag="VNB68_02295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-CASP ribonuclease aCPSF1"
                     /protein_id="HVD36212.1"
                     /translation="NNEILNQNIDGNESLTLENTRKTRNVSKNKKSIGQNNSEKRDRL
                     DEDDILANVIRPSIPKESEITSAKFEGPNISLYTLNPKFSLTELTYYLSSLSRSLKKR
                     FIIRTDPSIRLSEEETRSTILKILPNGVSISAVFCDDATGEVVLEVSHPELITPTIFI
                     DIAEKTGWIAHTLRSPHIPSSSINVIHSNLKNSAKERSLFLQTLGKRIFRPPLILSNE
                     YDDYSNGVGKTGSFDEPGMRSRPRSRQEISLFCLGGVKQVGRSCFIVVTSESKIMLDC
                     GINPGENSGISAYPRLDWFNFDLDEIDAVVLSHAHIDHQGFLPTLFKYGYKGPVYCTE
                     PTLPLMTLLQHDSVKIAKNNGTFLPYESRDVNEVIKHCITIPYGKPTDISPDVTITLN
                     NAGHIMGSATVHLNISGVHNILYSGDYKYAKTQLLDSAVSIYPRVETLITESTYGNSS
                     DLMPDQSTVYRTFTDSINQTLSTGGKVLIPVPAVGRAQEIMLVIDREMREGRLMEAPI
                     FIEGMISEASAIHMAYAHYLGYDVRKSVSQGVNPFQSDYFTVVNGHGRRDEVFNDENP
                     SVIMATSGMLEGGPSVEYFKEIAPNKLNKIMFVSYQINGTLGRRVIDGGITEVSMLDD
                     KGKVKVTPVRCSTQKIDGFSGHSDFNQILNFVTRVKPKRVLVNHGEKSKSENVASVVY
                     SRLRVKSTVPDSREIIRLR"
BASE COUNT         1472 a         1046 c          909 g         1733 t
ORIGIN      
        1 tgaattcatc accatgccta gtaattatct cagtttgaaa gactgccata ccagacatca
       61 ttttagttac gtcagctatt ggtaacgctg atgctagggg agattttacc ggcccaagta
      121 attcgatgat tttccctatt cttgtgcctt tcttatcaac gactgattga cctattattg
      181 aaaggtcgta tgagggatta agcctgacaa taagcttgcc actcttagcc aagtgcaaga
      241 cctctcccac ttgtttcaac ttcatattca ccaatctagg acacttgtta tcattttatt
      301 ctgtcaataa aagttagtta tgtgataaaa cttaatattc atacgatttt cccggatttc
      361 gctcatcaag attcccatac agttactagt ttttgctcgt atttctcctt tcctgcaatt
      421 tcctggcaat ttgatttagc aaatttgatt tcttctcaga tttgggaagc attagatatc
      481 ctgacctgac atacggcctt cttggatatc tggcttggtt attgatgtct tcgtcagaaa
      541 ttgccaagtt caaatcttta gatgccttgc ttaattcttc taatgtagga tcgtaaattg
      601 ccagtttttt tgaaatccgt cggcctttcc gcttcgaaat atttttgtta aaataatcta
      661 accatataat cacatggcca taatctttca ttcgctaatc aacaaacttt gctatattaa
      721 atatgtttaa tccaaggagc ttttaaatta cggggctatg agggctagtc taattaccgt
      781 ttaatcaaaa tagcgttaac gataccatgt tgaccaggtc ttgaaacgac tcttgctgaa
      841 ccgaggtcgg tatctattat tgctccctta gtgactacac cccgtcgttc aaaatcctta
      901 ttggtagggt ttttcgttac tcttagtatt tttgattttg tcgtcttttt ttcaacagga
      961 tccgaaatat ttgcaaattc tacgctttta aatgagattt ttctattgcc acctctaact
     1021 cgccggaata tggttttctg tgttcctact actggttcac tcgggtacct atctatttca
     1081 tattttcttc tccctcttgc aaccatcttc ctgcctccag taagttttcg tccagaaaga
     1141 gtctctatgg atttcctcat ttcatcttcg aattgaaaaa aacggtatta aggtgtttct
     1201 atttgcagta aaatgctatt attagaatca tttttgtacg aggctatttt ttaaagcaat
     1261 taagtcatta attccaaaat attcctgaaa ttttctggtg gtccgataaa ttttcgttct
     1321 gccgaggttt tcatattcaa tgaacgaatg tgctcttaat tccttgagat gggaataaac
     1381 ctgacttcca cgaatttgga ctagcctttt agatgtgata ggttgctcat aagctatgta
     1441 tgagagtgtt ttcaatgcag agtttggaat tatgggttgt tgagcaaatc gccttaccaa
     1501 tggggtatat gagggtttaa cttgaaatac aaaagtctca tgttgaagct cactgatctc
     1561 caatgcttta aaagtgcctc ttgttctctg aaccaaatcc ctgactgttc gaagcgtaat
     1621 ttcctttgaa cccgaacccg tcgccttcat caattcttct agtgatacgg gtcttcctgc
     1681 cgaataaaga gcgacctcca acctcgccat agtctcgtct tgaggatatt tcttagccaa
     1741 ctgactcgat ctccaattcc tcgaattaac attaatcaga tttcttagaa taagaaatca
     1801 taaagtctcc atagtcctct tgatcgataa tgactaaacc tttcattgcg agataaagaa
     1861 ctgctatgaa acatctaaca atttctattg agttcattct ctcggtgaat tttcgaaata
     1921 gtacaaatcc gtctgcacta acaatatcaa agatcatctc ttcgtaggac ttgacaatct
     1981 gttcgaattt aactaaataa tcgttaaaat caaaagtttc tactgcttct aagttaagtt
     2041 gctttctttg cttcctagga tttgcaagat ccataatcat attttccaat acgtgaagaa
     2101 gttcttctaa tgttaccggg tatgttgatt cgattctgaa tggaatttca attggtttaa
     2161 gcatagggac ctcggcgtta ctctcggtca cctcgatacc tctcttcatc atggcgatct
     2221 tctccaatct aaaaatactc tctaccttaa gccgatatat catcgacgag gaaagtgccg
     2281 cgacaccaca gatccttaga tctcttcttc cactttcgga aagtattctc aataacatct
     2341 cgagcagggt agttacgttt atgtcccata cgtcttttct agataagaga gacgggttaa
     2401 acagaagatc cagaggtggt ttagatatac tatgattcgt ttcctcctgt ttatcttcca
     2461 ttatcgaaga gttatcgtgg ttagtattaa ttatattgct ccgataaata cggacaaaaa
     2521 cattcaaaag tcactatata attagaaaca gaattgggga tggtcatggc ttcaaagaag
     2581 gaattgagag aaaaagagaa tcagggacgt ctttcaaacg caatcatcac actagacacg
     2641 attgctagaa ataataatat tcagagaaat ataagaaata tgataaggga ggtaatgact
     2701 gcagttaaag atgagaagaa tggctcagtc tctgttcgtg ctgccaatgc gataagcatg
     2761 ctagataacg taactcaaaa ccctcaaatg caatctcaca tacgaaccat gatatggcag
     2821 gtagtatcca ctttagaaag tataagagaa taatgtaact attacttatt ctctacattc
     2881 tttactggtt ttagcggagg aggaagcttc tctaacttgt gatttgggtt tgcgagataa
     2941 tgtctggaag caccctcccc gctcaggaca atattacaat ttacacatct gtatcgaatc
     3001 gccaactcct attataataa tttgaggtat ctaaaaagca tacgcatgaa agctttatct
     3061 tagtctaatg atttctctgc tatctggcac agttgactta accctcaaac gagagtaaac
     3121 gacacttgcc acgttttctg atttcgattt ttcaccgtgg tttacaagca ctcgtttggg
     3181 ttttactctg gtgacaaaat tgagtatttg gttaaaatca ctatgaccgc taaaaccgtc
     3241 aattttctga gtagaacacc ttacgggtgt aactttcacc tttcctttat catcgagcat
     3301 gctgacttca gtgattccgc cgtctattac acgtcttccc aaagttccat taatttgata
     3361 cgacacgaac atgattttat tgagtttatt tggtgcaatt tctttaaaat attcgaccga
     3421 gggacctccc tcaagcattc ctgaagtagc cataataact gaaggatttt cgtcattgaa
     3481 aacctcatct ctacgtccat gtccattaac aactgtaaag taatccgatt ggaatggatt
     3541 tacaccttgt gagacagatt tcctcacgtc atatccaagg taatgtgcat aagccatatg
     3601 tatggcgcta gcttcagaaa tcatgccctc aataaatata ggagcctcca taagtctacc
     3661 ttctctcatt tctctatcta tgaccaacat tatctcttgg gctctcccga cagcaggtac
     3721 gggtatcagg accttaccgc cagtagatag tgtttgattt atgctatcag tgaacgtcct
     3781 atagactgtg gattgatctg gcattaagtc actgctgtta ccataagtac tttcagttat
     3841 tagagtctcg actctaggat aaattgacac tgcactatct agtaactggg tttttgcata
     3901 tttgtaatcc cctgaatata atatgttatg tacacccgaa atattgagat gcacagtagc
     3961 acttcccatt atgtgacctg cattgtttag tgttatagtg acatctggtg aaatatccgt
     4021 aggtttacca taaggtatcg tgatgcagtg ttttatgact tcatttacgt ctcttgattc
     4081 gtatggcaaa aatgtaccat tattctttgc tatcttaaca gaatcgtgct gaagaagggt
     4141 cattaatgga agtgttggtt ccgtgcaata aactggacct ttgtacccgt atttaaaaag
     4201 cgtaggtaaa aatccctgat gatctatatg agcatgactt agaactactg cgtcaatttc
     4261 gtcaagatca aaattaaacc aatctaatcg aggataagcc gatattccag aattctctcc
     4321 tggattgata ccgcaatcga gcatgatttt actttcagat gtaacaacta tgaaacacga
     4381 tctccctacc tgtttaacac ctcctagaca aaaaagggat atctcttgcc tactccttgg
     4441 tctggatctc ataccaggtt cgtcgaaaga gcctgtcttt cctaccccat tagaataatc
     4501 gtcatactca ttactcagta taagaggcgg cctaaatatc ctcttcccca aagtttgcag
     4561 gaatagactt cgctccttag ccgaattctt cagatttgaa tgaattacat tgatgctact
     4621 agaggggata tgaggtgaac gtaacgtatg tgcaatccat cctgtttttt cagcgatatc
     4681 tatgaatatt gtaggtgtga tgagctcagg atggctaacc tccaaaacta cttctccagt
     4741 agcgtcgtca cagaaaacag ctgatatgct tactccattg ggaagtattt tcaaaatggt
     4801 agaacgagtc tcttcttctg ataatcttat tgacggatcg gttctgataa tgaacctttt
     4861 ctttaatgat ctagataagg aagaaaggta ataagttaat tcagttaatg agaacttggg
     4921 atttaaggtg taaagtgaaa tatttggacc ttcaaatttt gcggacgtga tttctgattc
     4981 ctttggaatt gaaggacgaa ttacattagc aagaatatca tcttcgtcta atctgtccct
     5041 cttttcacta ttgttttgac ctatcgattt cttatttttt gatacattcc tggtctttct
     5101 agtattctct aacgtaagac tttcatttcc atcaatattc tgatttaaaa tctcattgtt
//
LOCUS       DATLQL010000218         1567 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_229731, whole genome shotgun sequence.
ACCESSION   DATLQL010000218 DATLQL010000000
VERSION     DATLQL010000218.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1567)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1567)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1567
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_229731"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(78..443)
                     /locus_tag="VNB68_02300"
     CDS             complement(78..443)
                     /locus_tag="VNB68_02300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36213.1"
                     /translation="MSSNRSSMELKGEEVYTGWAYSTGRDFYSETWSVDMPPSTAFVK
                     TYLCDHVLFGENGAVEIGILNIRYHLPDDSDGRVNLPGLEWPDSVKAWFNSNITHFTF
                     AIKVRQCYALMSCSVGYWS"
     gene            577..888
                     /locus_tag="VNB68_02305"
     CDS             577..888
                     /locus_tag="VNB68_02305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36214.1"
                     /translation="MEEGKKSWLKNIKGSWRDVICPCGSTFHFDGSIDALFSWETIHI
                     RHMSFDSENHDMLSFYPKDMVIFYHSKSGYVVERRRHTDDEIHDLQTACIYGTAKLAG
                     V"
     gene            1128..>1567
                     /locus_tag="VNB68_02310"
     CDS             1128..>1567
                     /locus_tag="VNB68_02310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36215.1"
                     /translation="MTAGKYFNRAVMALDAPHIGFVVRETPDKIVVFGEKNERYDIPI
                     SEIQHVSKNVLIGLNFSDIAKKNKVDRDAPLPTSKYVDPWGSDGKVDLTEYMKRYGKT
                     LFNKGVRIENEDHVGHVMKETDDKIVIFGEHDYRFDVPKSKITFV"
BASE COUNT          531 a          280 c          330 g          426 t
ORIGIN      
        1 tatcatatag agcaactcca cgaatcgatt ttaccttggg aacactgcct acctgcgaga
       61 agtacatctc tgcttgacta gctccaatat cccacagaac agctcattag cgcgtaacat
      121 tgtcttacct ttatggcaaa agtaaaatgg gtgatatttg agttaaacca cgccttaact
      181 gagtcaggcc attctaggcc ggggaggttg actcggccgt cactatcgtc aggaagatgg
      241 tatcgtatgt tcaaaatgcc tatctctacg gcaccgttct cgccaaacaa aacgtgatca
      301 catagatatg tttttacgaa tgctgtagaa ggaggcatgt ctacagacca ggtctcggaa
      361 taaaaatcgc gaccagtcga ataggcccat ccggtatata cttcctctcc ctttaattcc
      421 attgatgacc gattagacga caaacttgct attaaggtta gtttggagtc cttagtagaa
      481 gcgtttcatc ctaacattat ttaagataga gcattttgag taacaaaaac atacatacat
      541 ataattcaag agaggttagc taattgttga tggctagtgg aagagggcaa gaagagctgg
      601 cttaagaaca taaaaggaag ttggagagac gttatatgtc catgcggaag tactttccat
      661 tttgatggtt ctatagatgc tttattctca tgggagacga tacatattag acatatgtca
      721 tttgactctg agaaccacga tatgctatcc ttctacccaa aagatatggt cattttttat
      781 cattctaaga gcgggtacgt agtagaaaga cgcagacata ctgatgatga aattcatgat
      841 ctacaaaccg cctgcattta tgggacagcc aaactcgcgg gtgtataata tttctacact
      901 catatcatgt tgcactgtca gaggattgaa tatgatgtaa attcaacggc aagaaatatc
      961 aagaaattat ctgacaatta tgaaatgagg tacactagca tatcttggat aagaatgaaa
     1021 aagtactata ccacaaggaa gacactaaca aaaacatacg taataaatgc taaatccaga
     1081 acagggatta cggataaatg catgtgcctc aatagctagt atagaacatg acagctggca
     1141 aatacttcaa tagggctgtt atggcccttg atgcaccaca tataggattt gtagtaagag
     1201 agacgcccga taaaatcgta gtattcggag agaagaatga aagatatgac attcctattt
     1261 cagagattca gcatgtcagc aagaatgttt tgataggact taatttttct gatattgcaa
     1321 agaagaataa ggtggaccgt gatgcgccac tcccaacatc aaaatacgtt gatccttggg
     1381 gttcggatgg aaaagttgat ctaacagaat atatgaagcg atatggaaag acacttttca
     1441 ataaaggcgt aagaatagaa aatgaagatc atgtaggaca tgtgatgaag gaaactgacg
     1501 ataaaatagt gatatttgga gagcatgatt atagatttga tgtgcccaaa tccaaaataa
     1561 cttttgt
//
LOCUS       DATLQL010000219         1102 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_230048, whole genome shotgun sequence.
ACCESSION   DATLQL010000219 DATLQL010000000
VERSION     DATLQL010000219.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1102)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1102)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1102
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230048"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..312
                     /locus_tag="VNB68_02315"
     CDS             <1..312
                     /locus_tag="VNB68_02315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36216.1"
                     /translation="FAINQHQSVGAYIIQRTSRGVAPNNPNNDTTVLASFRINGEGFK
                     MEKDYVLTTNLSELRTKRLNPNELIRVENVTLSIEEVKEPSLWRRFLSSFSVTRTRIA
                     K"
     gene            complement(742..978)
                     /locus_tag="VNB68_02320"
     CDS             complement(742..978)
                     /locus_tag="VNB68_02320"
                     /inference="COORDINATES: protein motif:HMM:NF025392.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-binding protein"
                     /protein_id="HVD36217.1"
                     /translation="MPTYLDAHDLGNATEEQLKQVQNAPKDEFGVTHKNILYNKEENK
                     AFCILDAPNKDAVEKTHEQFGMKCNWITEVKTTA"
BASE COUNT          331 a          195 c          234 g          342 t
ORIGIN      
        1 tttgcaataa atcaacacca atccgtaggc gcatacatca tccagcggac tagtagagga
       61 gtggctccaa ataatcctaa taacgatact actgttctgg cttcatttcg tattaacggg
      121 gaaggtttta agatggagaa agactatgtt ctaacaacca atttatcaga gttgcgaaca
      181 aaacggctta atccgaatga gcttattcgt gttgaaaatg ttacactctc aattgaagaa
      241 gttaaggaac cttccttatg gcgtaggttt ttgtcttcat ttagcgtgac acgcactcga
      301 attgcgaagt agtgccacct caagctggac agatttgagc cttgtacact caatctcttt
      361 gaccccctct tacagccgtc ttttgctgcc aaagaaagac attgctcatt ttgcaatgat
      421 agatgaaagt cgaccgactg gtaggttttt caggtttaga aaagacatga atgatgatca
      481 aagtttatag ttttttcata gtatagattc cacaccatgg ataaagggag agaatgaatg
      541 aaaatagaaa agaattgcag aagctaattg atagaaacga aataattgat gaggtaaatg
      601 ggaaggtaac aaaacactga taggcggaat tggcaaggaa taattgactg ctttgctgat
      661 gaagtagttc tagactatac atcactttgg ggaggaaatc caacgaaact caaagctgca
      721 gaaatatcaa tcagaatttt ttcatgcagt ggtcttgact tcggttatcc aattgcattt
      781 cataccaaat tgttcgtggg tcttttctac agcgtccttg ttgggtgcgt ctaaaatgca
      841 aaaggctttg ttctcctctt tgttgtaaag gatgttcttg tgtgtaacgc cgaattcatc
      901 ctttggagcg ttttggactt gttttagctg ctcttcagtc gcatttccca agtcatgagc
      961 gtcaagatat gtaggcatat tcaaaaggaa caagaaaagg gttcgtttta agcctttctt
     1021 aattaagttt cattccttcg ttcatactcg ttgcaaaagg ctattgatga taatgttcct
     1081 gtttcatagg gtatgtatga tt
//
LOCUS       DATLQL010000220         1153 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_763962, whole genome shotgun sequence.
ACCESSION   DATLQL010000220 DATLQL010000000
VERSION     DATLQL010000220.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1153)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1153)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1153
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_763962"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            230..970
                     /locus_tag="VNB68_02325"
     CDS             230..970
                     /locus_tag="VNB68_02325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ERCC4 domain-containing protein"
                     /protein_id="HVD36218.1"
                     /translation="MQVRIVIDERERSSKIPNLLRQMGITIDFASLAVGDYIVSPETA
                     IERKTINDLLASIYDGRLYVQCSDLIQHYSRPVVVIEGNIRDLEDLHNIRDDDQFRIV
                     LDRIQISYDALAKIALDFRIPIIHSPSAEYSSRLLLTMARRSMEEGHSIGPFLKKIKK
                     NNPLYLQQLFVLSSLPSIGNKLAARMLKKFNTPQRALNASIAELASIPGFGTARAVRV
                     RKILDCSENDKIDLLTQRTLLDDQNSSQ"
BASE COUNT          389 a          216 c          219 g          329 t
ORIGIN      
        1 agggtaaaag aaaacttaaa ggaagtagaa aataagatta accaaatgat taggggcgtg
       61 cagggaaatg tcgaaccaaa atcaaatact agtccatgac attaacaaac tatctttttt
      121 gatcttataa atttagaaaa gatctcctga tttaaatacc aattatcatt aggacaaacg
      181 ggaatgatga agagcttata tacattagtc gttcctaata aatcgatacg tgcaggtaag
      241 aattgtaata gatgagagag aacgaagtag caaaattcca aatcttcttc gccaaatggg
      301 gataacaatc gatttcgcgt ctttggcagt tggtgattat attgtatcac ctgaaacagc
      361 aatagaacga aaaacaatta acgacttact tgcttctata tacgacggga gactatacgt
      421 ccagtgttca gatcttatac agcattattc taggccagta gtagtaatcg aaggaaatat
      481 ccgtgacctt gaggatctac acaatatacg cgatgatgac caatttagaa ttgtgttaga
      541 tagaattcag atatcatacg atgccttagc aaagatagca ttggatttca gaattccgat
      601 tatacatagc ccatccgcag aatactcttc caggctcctt ttgactatgg caaggagatc
      661 catggaagaa ggacatagta ttggtccttt cttgaagaag attaagaaga ataatccgct
      721 ataccttcaa cagttattcg tactatcttc attgcctagt attggcaata aattggcggc
      781 aaggatgctt aagaagttta acacgcctca acgggcactt aatgcatcga tcgcagaact
      841 tgctagcata ccaggttttg gcactgcccg cgcagttaga gtgcgaaaaa ttttggattg
      901 ttcagaaaat gataaaattg acttactgac ccaaagaaca ctcctagatg atcagaatag
      961 ctctcaatga actgatagat tcaagttagt ttacccttcc ggattgattc ctcctgtgca
     1021 ttttgccctt ggatctccag tcattaagca gacgttttcc acctttcgcg aagtcgtatc
     1081 aataacttaa attggatcca ttatgttcac tccataatat tgattatcaa gaatactgac
     1141 ccctataagc tga
//
LOCUS       DATLQL010000221         2029 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2006735, whole genome shotgun sequence.
ACCESSION   DATLQL010000221 DATLQL010000000
VERSION     DATLQL010000221.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2029)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2029)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2029
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2006735"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(275..424)
                     /locus_tag="VNB68_02330"
     CDS             complement(275..424)
                     /locus_tag="VNB68_02330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36219.1"
                     /translation="MQTKVEELEEVNRSLRQRDKVKDDAIAQLSDQLMVITTRLQEVE
                     RRQQL"
     gene            865..1077
                     /locus_tag="VNB68_02335"
     CDS             865..1077
                     /locus_tag="VNB68_02335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36220.1"
                     /translation="MSAKKINDHTCEYSNHIHASATDEFLAFIEKNGVTFEQARAARQ
                     EASNSHNHEETPNFAKSIERRSLLRG"
     gene            complement(1339..1464)
                     /locus_tag="VNB68_02340"
     CDS             complement(1339..1464)
                     /locus_tag="VNB68_02340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36221.1"
                     /translation="MVATAAAKTEIAETVGGNVSLLHNDNNNGNNIIVSNATIIQ"
     gene            1549..1950
                     /locus_tag="VNB68_02345"
     CDS             1549..1950
                     /locus_tag="VNB68_02345"
                     /inference="COORDINATES: protein motif:HMM:NF025178.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme iron oxygenase ferredoxin subunit"
                     /protein_id="HVD36222.1"
                     /translation="MAQNNFVEVGKVNEIPDGKMKHVEVDGKEVLVANVGGKFYAISD
                     RCGHMNALLSMGNLTGNTVTCPFHGAKFDIITGKKLTEPILTPPQEMEPLPPSWQKFF
                     EYVGQLMAHIKTYDQSTYEIRIDGDRIKIRI"
BASE COUNT          636 a          380 c          385 g          628 t
ORIGIN      
        1 tcaagtcgcc atagtcatga aggtaagttc attcattatt ggaagaacta taagttataa
       61 attcttgggt tcaaggtctg cattagcagg accattgatg acttttcccc tgcctgagaa
      121 acgtgaacca tgacatggac aatcaaagga tttttctaaa caattccacg atacattaca
      181 accaaggtga gtgcatactg cagagtaagt atgcaaattg ccggttttat ctttgtaaat
      241 gagtgaggat caaatagtta tatctttaat caattcacag ttgttgtctt ctttcaactt
      301 cctgcaacct tgtggttata accataagtt gatctgacaa ttgtgctatt gcatcgtctt
      361 ttactttgtc acgctgtctt aatgaccgat ttacttcttc caattcttct acctttgttt
      421 gcatatctgc accttatctt tctaattgat ggacattcac gtgcaatcag tggaaaggaa
      481 actaggagag cagcaactaa ccttatcgtt caatatctta atcatatttt gatagttcac
      541 ctggaagaaa tggaagaata aaataaaaga gaaataattt tatattacat tcttcttctc
      601 gtaaaaatgc atagctggcc tgctaatgat attcgttggt caacgtctga cgtatgacct
      661 atctatatgt tatgagcggc ctgtcctttt tactcaaata agttcatatt ctcagctata
      721 ttacatagtc cataatgtga tatagaatag caacctctat agctagctga ttgcttgata
      781 tttggattga agaatattat tgctatctcc atctccgacg ctattaccac gaaaggacgt
      841 actaaggtct aggttgtgcg ggagttgagc gccaagaaga tcaatgatca cacctgtgag
      901 tacagcaatc acatccatgc gagtgcaacg gatgagttcc tggcattcat cgagaagaat
      961 ggcgtcacct ttgaacaagc cagggctgct aggcaggagg catcgaactc tcataaccac
     1021 gaagaaacgc cgaactttgc caaaagcatc gaacgcagat ccctattgag gggttaatca
     1081 gcggaagcgg tcacttcatc aagggtacgg gaagcggctc catttaaaaa aataaaatta
     1141 acaaaattat tccttcgcct gagtctcatc aggctctata gatttaatga acgtgtgctc
     1201 tttgaacgac ttgtatcagt atgtatctcc catcatgtaa tataacataa ggtaacactt
     1261 caaaccccat ctatttgcga tttatgagct atcgagtatt gaatagtcca taggtagtcc
     1321 gtgctcatac attgtgatct actgaatgat tgtagcgttg gatacgataa tgttattacc
     1381 gttattatta tcattgtgta ataaagatac atttccccca actgtttctg ctatttctgt
     1441 ttttgctgca gctgtagcga ccaatttgaa aatctattat aaactttcag ctacatactt
     1501 ttcgaattga taggttttta tgcattatct atcaatccat tgctatacat ggctcaaaat
     1561 aactttgttg aagttggaaa agtaaatgaa attcctgatg gaaaaatgaa acatgttgaa
     1621 gttgatggaa aagaagtatt agttgctaat gtaggtggta agttctatgc gataagtgac
     1681 agatgtggtc atatgaatgc cctactttca atgggcaatt taacaggaaa cactgtaaca
     1741 tgcccttttc acggcgcaaa gttcgatatt ataacaggaa agaagcttac ggaaccaatt
     1801 ttaactccac cccaagagat ggaaccatta ccaccaagct ggcaaaagtt ttttgaatat
     1861 gttggtcaac ttatggctca catcaagaca tatgatcaat caacttatga aataagaatt
     1921 gatggagata ggatcaagat caggatttag cacataactt gcattttgat gcttcagcta
     1981 tacaacgcag agcagatgaa aaggaaactc tttattgcgc agatgaata
//
LOCUS       DATLQL010000222         1196 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_409105, whole genome shotgun sequence.
ACCESSION   DATLQL010000222 DATLQL010000000
VERSION     DATLQL010000222.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1196)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1196)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1196
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_409105"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            280..827
                     /locus_tag="VNB68_02350"
                     /pseudo
     CDS             280..827
                     /locus_tag="VNB68_02350"
                     /inference="COORDINATES: protein motif:HMM:NF013743.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(933..>1196)
                     /locus_tag="VNB68_02355"
     CDS             complement(933..>1196)
                     /locus_tag="VNB68_02355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HVD36223.1"
                     /translation="HIPGAVNIPWGQAVNEDGTFKSADELQKLYQSKGVAADKEVISY
                     CRIGERSSHTWFVLKYLLGYPNVKNYDGSWTEWGNMIDNPIER"
BASE COUNT          384 a          223 c          248 g          341 t
ORIGIN      
        1 atcatttgca ttatcagtgg tgcagtttcc acattagatc catttggagc aattcataaa
       61 cacaacaaaa aaataaaaga ataaactggg cattattgtc aaagagagtc tgtgaaaata
      121 gactactgcc tttttcccga aggatttcta tatgacttgg agaattttgt ctggctgaaa
      181 gaggacaata acattaacaa taacagaaag aacaataaca ccaactccgt cagttcaccc
      241 aaaaaattta ctttaggcgt tactcctatt ttggcatcta tggccggtaa attcacaaag
      301 atcaagttga aaccagtagg aactgatgta gaaaaaggaa agagcatagg atccgtagaa
      361 agcgttcgtt attttggtat cgctcgcact ccaattaccg gaaaattctg caagtaaacg
      421 aaaacgtgct cgtaaatcca aaacttgcca atgattttcc ctatgagaat ggctggctta
      481 ttaaaatgga gacagatgcc atttctccat ctgatatgag cggtttgaaa attgtcgaag
      541 attgtcaaga tgaaattaaa tcgattatgg aaaagcttca tgtaaggtgc tttgctgcgt
      601 tccccgatca tcaaatgttc gaaattggcg tagaatgcgc cgctacacta acaaaactcg
      661 gggagcttct ttccaaagtc caattaggcg atgtagtaca tcttgtgtcc gatgataact
      721 cggcagattt agagatgatc aggtggactg aagataatgg acaacaattg ttggagacga
      781 gaaaagaagg aaatctgttc catttcattg ttaaaaaagc aaaataaaag aaagaaaagt
      841 aattttctct ttctattcta gtccgcaata gcggaacata aaaaagggac ggagtgagga
      901 aataaagtgc tttcttattc ttgtatggtg tattaccttt ctatggggtt atcgatcatg
      961 tttccccatt ctgtccacga gccgtcataa ttctttacat tagggtatcc aagtagatac
     1021 tttaggacga accatgtgtg ggaagacctc tcgccaattc tgcagtatga tatgacctcc
     1081 ttatcggcag caacgccctt tgattggtac agtttttgta gttcgtcagc cgatttgaaa
     1141 gttccatcct cgtttacggc ttgtccccaa gggatgttaa ctgcaccagg gatatg
//
LOCUS       DATLQL010000223         1908 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1475004, whole genome shotgun sequence.
ACCESSION   DATLQL010000223 DATLQL010000000
VERSION     DATLQL010000223.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1908)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1908)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1908
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1475004"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(218..352)
                     /locus_tag="VNB68_02360"
     CDS             complement(218..352)
                     /locus_tag="VNB68_02360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36224.1"
                     /translation="MGFDQISDFFEKSREKLKKEHDSMIAQIKEEISSIKRKALSKTQ
                     "
     gene            complement(380..1030)
                     /locus_tag="VNB68_02365"
     CDS             complement(380..1030)
                     /locus_tag="VNB68_02365"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016471 - vacuolar proton-transporting
                     V-type ATPase complex [Evidence IEA];
                     GO_function: GO:0008553 - P-type proton-exporting
                     transporter activity [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATP synthase subunit D"
                     /protein_id="HVD36225.1"
                     /translation="MSFGKRVTATKIELIKIRRSLQVGRMVHKILDDKREVLLKKIDE
                     IIEEANKARGDIWSPLSNVYSAVYDSYMTLGTTTVESIADSTPSIMEVDVNVRRIVDV
                     KIPTLSVKTREGGQDLSYGFTETNAFVDKAARLIKNMLPKICKAAEYENAIFSLAKEL
                     ERTQKLINALEFVIIPHYEEAISFIKATLEEREREEFVRLKKVKVVLDRKKALEQV"
     gene            complement(1050..>1908)
                     /locus_tag="VNB68_02370"
     CDS             complement(1050..>1908)
                     /locus_tag="VNB68_02370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="V-type ATP synthase subunit B"
                     /protein_id="HVD36226.1"
                     /translation="EDFAVVFAAIGVQYSEAQYFKRSLEESGALRRSVLFLNLADDPA
                     IERIITPRVALTVAEYLAFDLGMHVLAILTDMTNYAEALREISAAREEVPGRKGYPGY
                     LYTDLANNYERAGRIKGKNGSVTQVPILSMPADDITHPIPDLTGYITEGQIVLGRDLF
                     RKGIYPPVNVLMSLSRLMKDGVGEGKTRSDHMEVGNQLYDLYSRAQEVRALAEIVGKA
                     GLTGVDLKYLDAGDMFESYFLKQNPDENRNLEETMARAWAILSTLPEGELTKIKDKHV
                     KQYHKKADK"
BASE COUNT          496 a          433 c          331 g          648 t
ORIGIN      
        1 agaattactg tttgtttttt gaaaaacaat acggctaatg atggaaataa tctactggct
       61 agaaattcga ttttggaaat tggaactgtt cttcgttagc ctaggacaaa ttttagtcct
      121 tttagtgaga ggttctaaag aaaaagaatt aaggtatctc caactagttg ccagtcaatt
      181 acggaagttc agttggcact aaattaggat atgtttatta ctgtgtcttt gagagcgctt
      241 tccttttaat agaggaaatt tcttccttta tctgggctat cattgaatca tgttcttttt
      301 ttaatttttc gcgggatttt tcaaagaaat ctgatatttg gtcaaaaccc atttcaaaac
      361 gacctcatca caatgacttt caaacttgtt ccaacgcctt tttcctatcc agtactactt
      421 taactttctt taacctcaca aattcttcac gttcgcgttc ctccagcgtg gctttgataa
      481 aggaaatagc ctcctcataa tgcggtatta tgacgaattc taaagcatta atcagctttt
      541 gagtacgttc cagctctttg gctaagctga atatagcgtt ttcatattct gctgctttgc
      601 aaatttttgg aagcatattc tttatcagcc ttgcggcctt gtctacaaaa gcattggtct
      661 ctgtaaatcc gtatgagaga tcttgtccac cctctctagt tttaacactt agcgttggaa
      721 tttttacatc cacaatacgt cttacattta cgtcgacttc cattatactg ggagtggaat
      781 cagcgattga ttcaaccgta gttgttccaa gcgtcatata agagtcatac acagcagagt
      841 agacattact caaaggagac caaatgtcac cccgtgcctt gtttgcctct tctataattt
      901 catctatctt tttcaagaga acttctcttt tgtcatctaa tattttatgc accattctgc
      961 ctacctgaag tgatcgtctt atcttgatta gttcgatttt tgtagcagtt acccgcttgc
     1021 caaatgacat gttgaattac tcgcttccat catttgtcgg ctttcttatg gtactgttta
     1081 acgtgcttat cctttatctt ggttaattcc ccttctggca gagtcgacaa tatagcccaa
     1141 gctctcgcca tggtttcttc tagattcctg ttttcatcgg gattttgttt taaaaagtat
     1201 gactcaaaca tgtcgcctgc gtcaagatac ttgaggtcaa cgccagtcag acctgccttt
     1261 cccacaatct cggcgagcgc tcttacttct tgcgccctgg aatatagatc atagagttga
     1321 ttacccactt ccatatgatc agaccttgtc tttccttcac caacaccgtc cttcatgagt
     1381 cttgaaagag acatcaagac atttactgga ggatagatgc cctttctgaa taaatcacgt
     1441 cctaggacaa tttgtccttc cgttatgtag ccagttaaat caggtatagg gtgagtgatg
     1501 tcatccgcag gcatagatag tattggcacc tgagttacac ttccattctt tccctttatt
     1561 ctaccggctc tttcataatt atttgccaag tctgtataaa gataccctgg ataacccttt
     1621 cttccaggga cttcctctct ggcagcgcta atctctctga gggcttcagc gtagtttgtc
     1681 atatcagtta gaatagccaa tacatgcatc ccaagatcga aagccaggta ttctgccact
     1741 gtcaatgcca ctctaggagt aattattctc tctattgctg gatcgtctgc aagattcaag
     1801 aataagacac ttcgcctcaa agctcctgat tcttctagac tcctcttaaa atactgggcc
     1861 tcagaatact gcactccaat agctgcgaat acaaccgcaa aatcttcc
//
LOCUS       DATLQL010000224         1207 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_230357, whole genome shotgun sequence.
ACCESSION   DATLQL010000224 DATLQL010000000
VERSION     DATLQL010000224.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1207)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1207)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1207
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230357"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            556..1083
                     /locus_tag="VNB68_02375"
     CDS             556..1083
                     /locus_tag="VNB68_02375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36227.1"
                     /translation="MEVLEGNTLAKSLFERYSANARDWRFEISVSEKSGSFFDAIVSN
                     PNEVWQLKIDSIYKPNPLIIGTKIDVDPIKFSNDKNAFSFGYRKLDPIRLQKALDNGE
                     VSDSENNALDSLLASLITSVEPEVPRPNNSYAYGPFIFAQNRLTGVDKHQKNISEKLA
                     NRLREKLRSLYSGYG"
BASE COUNT          385 a          240 c          218 g          364 t
ORIGIN      
        1 attgtgcatt aacattaagg cgcatcatat tacctattca catcgcagac ttcttatgca
       61 gttgtaattt tttcccaact cattatttcc tatcagtgat gattacaaaa acgagtcttt
      121 tttttaagac taccgtgaga gagttcggct atgctttaac attgtcaagt agtacctcta
      181 attacctcct aaatctgggc caaatgtacg tctggcgagg tttattgaag aaagttgttt
      241 catagataac tccaacgcaa atagtttttg tctaccgcgt cttcttatcc tcactcagtc
      301 atagaccgag aacctagttt gaattgttgg ggaactctgt ccgaactttc acaattgtct
      361 gcccaagaga acaaacagta ctctcatgtc atcaaattca gtaggactcc tgaggttcat
      421 acacactcac aacgaccaga ataggatgtc gaagttcaca cattttcaga attcaaccag
      481 atacaagaca tactcaattg tattcgaatt aaactatcgc aactctcata tttaccatca
      541 atgcaccaaa agtatatgga agttttagaa ggcaacactc tcgcaaaaag cctttttgaa
      601 aggtactctg ccaatgctcg cgattggaga tttgagattt ctgtttctga gaaaagtggt
      661 agtttttttg acgcgattgt gagtaatccc aacgaggttt ggcaattaaa aatagattca
      721 atttataaac caaatccttt gattattggt accaagattg atgtcgatcc gataaaattt
      781 agcaacgata aaaatgcgtt ttcgttcgga tacagaaagt tggatccaat acggctccag
      841 aaagcactgg acaatggtga agtttcagat agtgagaata atgcattaga ctcacttctt
      901 gcatctttaa ttacctccgt ggaaccggaa gttccaagac caaataacag ctatgcttac
      961 ggtccattca tatttgccca aaatagactc acgggagtgg ataagcacca aaagaatatt
     1021 tctgagaagc ttgccaacag gttacgtgaa aagttaagat ctttatattc tggatatggt
     1081 tgactaagat ggtaaataca ttttgcatga cccgccgaat tagaaaatga actttgcgat
     1141 actagattca ttcagcaacg agacaacccc atgaatcatg attaggtcat agtttcaaat
     1201 ctttcta
//
LOCUS       DATLQL010000225         1010 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_409447, whole genome shotgun sequence.
ACCESSION   DATLQL010000225 DATLQL010000000
VERSION     DATLQL010000225.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1010)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1010)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1010
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_409447"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1010)
                     /locus_tag="VNB68_02380"
     CDS             complement(<1..>1010)
                     /locus_tag="VNB68_02380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AIR synthase-related protein"
                     /protein_id="HVD36228.1"
                     /translation="IGVPTVGGDVEFDPSFEDYCLVDVASIGVGRKDRIITNSAKIND
                     LVVLAGGSTGRDGIHGASFASKTLEEENRSAIQIPDPFLEKLLMEATIEASEQGCIKA
                     IKGLGGGGLACCLSETSDNLKRGFDIELASIHTKHKNMLPVEFIISESQERMMYITDK
                     SKIDTLKAIFEKYEINYAVIGRVRKHHNLVIRNNGKLVAHMPSNLIANPPLVLRKSKS
                     PDYLKELRKKIIRPNVPNDLNKVLLSMMSNPSIAEKSWVYHQFDHEVGLRTVLKPGLG
                     DASVLKITSGKFISAKLDGNSKHCFLDPYQGTLGCLSEVRRNVISTGAEPIGVIDHLQ
                     FG"
BASE COUNT          275 a          219 c          176 g          340 t
ORIGIN      
        1 cttccaaatt gcaggtggtc aattacacct ataggctcag cgccggtaga gattacattt
       61 cttctaactt ctgacaaaca tcccaaagtt ccttgataag gatccaaaaa acagtgtttc
      121 gaattgccgt caagtttggc ggaaataaat tttccactag ttattttcaa aacgctagca
      181 tcgcccaatc ctggtttcag tacagtccga agcccgactt catgatcaaa ttggtggtag
      241 acccaagatt tttcagctat cgaaggattc gacatcatcg aaagaagaac tttgttcaga
      301 tcgttgggaa cattaggcct tatgattttc ttgcgcaatt cttttagata atctggtgat
      361 ttcgattttc tcaggacaag gggtggattt gctatgagat ttgatggcat gtgagccacc
      421 aatttgccat tatttcttat tacaagattg tgatgctttc tcactctacc tattactgcg
      481 tagttaattt catatttttc gaatattgct ttaagtgtat caattttact cttatctgta
      541 atatacatca ttctttcctg agattctgat ataatgaatt cgactggtaa catgtttttg
      601 tgtttagtat gaattgacgc taattcgata tcaaagcctc tttttagatt gtctgatgtt
      661 tctgacagac aacacgccaa accacctccg cctaaacctt ttatagcctt tatacaacct
      721 tgctctgacg cttcaattgt tgcctccatt agcaactttt ctaaaaatgg gtcggggatt
      781 tggattgcag atctgttttc ctcttctaaa gtcttagaag cgaaggacgc tccgtgaata
      841 ccatctctac cagtggaacc tcctgcaaga acgaccaaat cattgatttt agcactattc
      901 gtaataattc gatcttttct tccaactcca atggatgcta catctactag acagtagtcc
      961 tcaaaggatg gatcaaattc tacgtcacct cctaccgttg gcactccaat
//
LOCUS       DATLQL010000226         2304 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2007299, whole genome shotgun sequence.
ACCESSION   DATLQL010000226 DATLQL010000000
VERSION     DATLQL010000226.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2304)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2304)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2304
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2007299"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..720
                     /gene="amrB"
                     /locus_tag="VNB68_02385"
     CDS             <1..720
                     /gene="amrB"
                     /locus_tag="VNB68_02385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AmmeMemoRadiSam system protein B"
                     /protein_id="HVD36229.1"
                     /translation="TSPKQKIYGLVSPHAGYIYSGSVAANGFYQISSSTFDDVVMIGP
                     NHYGIGTGVATTREGSWETPLGQVEVNSDLALGISRESGLVDFDDFAHSRDHCLEVQI
                     PFLQFIRKDPVKIVPIIVMMQDKKTASELGKSVAQCTINTDTLLIASSDFTHYEPNAE
                     AHRKDNELIKTILSLDVSAFYSVLERLNVSACGYGAIASVMTAVKILGATKGVLLKYA
                     TSGDVKGDTRSVVGYSSIIFQ"
     gene            717..1709
                     /gene="mvk"
                     /locus_tag="VNB68_02390"
     CDS             717..1709
                     /gene="mvk"
                     /locus_tag="VNB68_02390"
                     /EC_number="2.7.1.36"
                     /inference="COORDINATES: protein motif:HMM:TIGR00549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004496 - mevalonate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0016126 - sterol biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019287 - isopentenyl diphosphate
                     biosynthetic process, mevalonate pathway [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mevalonate kinase"
                     /protein_id="HVD36230.1"
                     /translation="MIFRRTSANASAPGKIIFFGEHFVIYNNLAILGSINRRIRVAVS
                     LNNDPDRCINIRSDLGVAASYSASSHANVIREGKDMDINLEPIYKIAKDILSEREQNA
                     GIDIYLVSEVPYGVGLGSSAASCVATGAAIDALFHSPDKNWLYNKATEYERLIHKDSS
                     GADCFISTFGGLRYYMKEKGFENIQLEKDLTLLVVNTGIRHSTGTLVSLVRRFKENNL
                     SIFEDLVSTAAHICSSALTAFRTGNETKLGTLMNENHQLLQKIGVSHKKIDYLVEVCI
                     KSGALGAKLTGAGGGGCIITLVRNNELLDVSSKIEKDAREFMPIKIDYDGLLVD"
     gene            1745..>2304
                     /locus_tag="VNB68_02395"
     CDS             1745..>2304
                     /locus_tag="VNB68_02395"
                     /EC_number="2.7.4.26"
                     /inference="COORDINATES: protein motif:HMM:NF012899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isopentenyl phosphate kinase"
                     /protein_id="HVD36231.1"
                     /translation="MRANITLIKLGGSVITFKDRPLSVNLKAIRNISHALLQLKTPLV
                     LVHGGGSFGHYWSTKYGMHTKPYRYDSHGISIVHESMIALNQIIANSMIKNGMNPYSI
                     MPSIFMQGQEPISAKISEINTIAESGIIPVTFGDIVHVNKGKYSILSGDSLMTIISKV
                     LKPSRVIFTLKVDGLYTDMKSQKLIHV"
BASE COUNT          732 a          428 c          482 g          662 t
ORIGIN      
        1 acaagtccta aacaaaaaat atacggatta gtttcgcctc atgctgggta tatttattcc
       61 ggatcagtcg ccgcgaacgg attttatcaa atatcatcat cgacgtttga tgatgtggta
      121 atgatcggtc ctaaccatta tggcattggt accggtgtag ctactacacg agaaggcagc
      181 tgggaaacgc ccttagggca agttgaggtc aattcagacc ttgcgcttgg aatttcaaga
      241 gagtctggct tagttgactt tgatgatttt gctcatagca gagatcattg tctcgaagtc
      301 caaattcctt ttctgcaatt tataagaaaa gatccagtca agattgtacc aataatagta
      361 atgatgcaag acaaaaaaac tgcgtctgaa ctgggcaaat cagtagcgca atgtactatt
      421 aatactgata ctttgcttat tgcatcttct gactttacac attacgagcc gaacgccgaa
      481 gcacatagaa aagacaatga gttgataaag acaatactat cattggatgt gtcggcgttc
      541 tactctgtcc tcgaaagatt aaatgtatcg gcttgtggat acggtgcaat tgcctccgtg
      601 atgacggcag tcaagatctt gggagcaaca aaaggcgtgt tgttaaaata tgctaccagc
      661 ggagacgtta aaggagatac cagatctgtt gtaggctact catcaataat tttccaatga
      721 tttttagaag gacttcggcg aatgcatcag cccctggaaa aataattttt ttcggagaac
      781 attttgttat ttataacaac cttgcaattc ttggatctat taatagacgc atcagagtcg
      841 ctgttagttt aaacaatgat ccagacagat gtatcaatat aagatcagat ttaggcgtgg
      901 ctgcatcata ctcggcgtcc tctcatgcca acgtgataag agaaggcaaa gatatggata
      961 taaatttaga gccgatttac aaaattgcca aggacatact ctcagagaga gaacaaaatg
     1021 ctggaataga catttatcta gtatcagaag ttccgtatgg tgttggactt ggctcatctg
     1081 cagcatcttg cgtagcgaca ggagcagcca tcgatgcgtt atttcattct ccggataaaa
     1141 attggctgta caacaaggct acagagtacg agcggcttat acacaaagat tcttctggtg
     1201 cagattgttt tatttctaca tttgggggtc taaggtatta catgaaagag aaggggtttg
     1261 aaaacattca attagaaaag gacttaacat tgcttgttgt aaatacagga atacgacatt
     1321 ctacagggac tttggtttct ttggtcagac gtttcaagga gaacaatcta tcgatattcg
     1381 aagatctcgt ctctactgca gcccacatct gtagcagtgc tctcacagca tttagaactg
     1441 gtaatgagac caaactgggt accttaatga atgagaacca tcagctattg cagaagatag
     1501 gggtatccca taaaaagatt gattatctcg tagaggtttg tattaaaagc ggtgcattag
     1561 gagcaaagct tactggtgca ggtggtggcg gatgcataat aactctagtg cgtaacaatg
     1621 aactattaga cgtatcttct aaaatcgaaa aggatgctcg cgaattcatg cctataaaaa
     1681 ttgattacga cggactgtta gtagattaac ttttaaatcc actcaaaatg atgctttttt
     1741 gaatatgaga gctaatataa cgttaatcaa gcttggcgga tcggtaatta ctttcaaaga
     1801 caggcctctg tcggtaaatc taaaagcaat aaggaatatt tcacatgcac tgctgcagtt
     1861 aaaaacaccg cttgtactcg ttcatggagg tggatctttt ggtcattatt ggtcaacgaa
     1921 atatggtatg cataccaagc cctaccggta tgactctcat ggtatctcca ttgttcacga
     1981 atcaatgata gctctaaacc agattatagc caattctatg ataaaaaatg gaatgaatcc
     2041 ttacagtatt atgccttcta ttttcatgca aggtcaagaa ccaatatcgg ccaagatatc
     2101 ggaaatcaac actatagcag aaagtggaat aattcccgta accttcggtg atatcgtgca
     2161 tgtaaataag ggaaagtatt caattctttc aggcgactcc ctcatgacaa ttatctccaa
     2221 agttctaaaa ccatccagag taatctttac acttaaagtc gatgggcttt acacagatat
     2281 gaagagtcaa aaacttattc atgt
//
LOCUS       DATLQL010000227         1136 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_230616, whole genome shotgun sequence.
ACCESSION   DATLQL010000227 DATLQL010000000
VERSION     DATLQL010000227.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1136)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1136)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1136
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230616"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(61..468)
                     /locus_tag="VNB68_02400"
     CDS             complement(61..468)
                     /locus_tag="VNB68_02400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36232.1"
                     /translation="MKPNSTANATGSGVDLINTHPSPVNVKTGSKFEILSTVVNNSPN
                     KILLPAGICDSPLTAFFMSNNVVIRNTQGCTAKSPPFELNPGQEVTVAGPASGTIYQA
                     IKAGKTPATATVYYLTENGQPGNVTKPFVFTIN"
BASE COUNT          358 a          204 c          235 g          339 t
ORIGIN      
        1 gaggtgctag gactaatctc aaatgatatg gtcaactaca tctcggatat gaacattcga
       61 ttaatttatt gtgaatacaa atggtttggt aacgttaccg ggctgcccat tctctgttag
      121 gtaataaaca gtggcagtcg ctggagtttt tccagccttg attgcttgat atattgtccc
      181 agaagcggga ccggctactg taacctcttg ccctgggttt aattcgaatg gaggtgattt
      241 cgcggtgcag ccctgggtat ttcttataac cacattatta gacataaaga acgccgttaa
      301 aggcgaatcg caaatcccag caggtaacag tatcttgttt ggtgaattat taactactgt
      361 tgataatatt tcaaatttgc tgccagtctt tacattgact ggcgagggat gagtgtttat
      421 taggtcaact ccagagcctg ttgcatttgc agtcgagttg ggtttcaaag attgtgaata
      481 tgcatatcga tcttcgtcca atgaaaaact gaggatagta atagttatga gtgtgactaa
      541 taagggtaat ttgatatcct gttttagttt gcaaaattgc atgaagcatt atatttactg
      601 aactatttgt gcttatccct ggcgtgttgg attgtttgga ttcattgaaa agattggtaa
      661 agagaattcg aactttccca aaatagatgt tgcggatcgt acactcaaac gctaacaaat
      721 tcacgcgtta attcgcggac gaatgacatc agcaaccacc ttggcaatga gaacaataga
      781 gtatgtattc tagatacctg caaaatgtct aaaaggagac caaagatcat ttccatagaa
      841 acgcagtaaa cgtaaatcct aaataatttg tatgtgatta tatattggca atctatggct
      901 cagcaacaac tgttaagaca agaatcatct gtttctcaaa ctctacgtac atataaaaag
      961 cagttaacac agaacatcga gcgaaatacc catgtgccca atattagcac cattagtcaa
     1021 cagtcgaacc aagaattatc tatttcccaa ataatacgta catacggaaa acagtttaca
     1081 cagattagaa agcagtatac cgacggactt gatggaagat gtgttatggg tgtcat
//
LOCUS       DATLQL010000228         1572 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_940008, whole genome shotgun sequence.
ACCESSION   DATLQL010000228 DATLQL010000000
VERSION     DATLQL010000228.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1572)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1572)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1572
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_940008"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            276..626
                     /locus_tag="VNB68_02405"
     CDS             276..626
                     /locus_tag="VNB68_02405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36233.1"
                     /translation="MRKASPLYQRQTILKLYNSGIPIEKISLQLDPSQSWMEKIIREL
                     LSGDEKKIRGLRRFQKDPLLGSFYLDAVFDLKGHEEIIRIPHLDILGYTISKSHQNDI
                     SIPARSNNYRGAPV"
     gene            899..>1572
                     /locus_tag="VNB68_02410"
     CDS             899..>1572
                     /locus_tag="VNB68_02410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36234.1"
                     /translation="MTFRGSLSKKAFFLYFLGLITCAILSSAHGEGDLAYAIWIKITS
                     PLTGQQVPMGELMISGESSDNGTSECQVYVDWNNQKPYQRATPTGPGSSQDFSNWTFT
                     YNSSYHTIQEGINDLTSKLTCLGSPSNPLAMNKWYSINVTGVNSQGSDAVQLPLPIQP
                     SVQDRKTNVNESTSNQIQINMQVDKNPISLGARQSLTVEAIDSSTGLKDSKAKIFVTV
                     TDPSGS"
BASE COUNT          516 a          315 c          311 g          430 t
ORIGIN      
        1 ccccaaggta ttggacaaaa agataagtgc tgacaacaag gagagcgagc aaaaggttac
       61 gagcggttcc gaaggaaatg gtaagaacca ttttgaactc ccaatcgata taccttttcc
      121 ctagatgtct agacagcata actggaaaca aaatacaata ttagaattga gggatttgat
      181 tttatgggag ctcaaatgca aatatgaatc gcaggaaatg tttaaagatc ggaagttggt
      241 gttagattcg atctgttaaa aggatgacaa aaccgttgag aaaagcttca ccgttgtatc
      301 aaaggcaaac tattctcaaa ttgtataatt ctggaattcc cattgaaaaa atatctttac
      361 aactcgaccc aagtcagagc tggatggaaa agatcattcg agaattattg tctggggatg
      421 agaaaaaaat aaggggattg agaagatttc aaaaagatcc gttgctagga tccttttatc
      481 ttgacgcagt atttgatctt aagggccatg aagaaataat cagaattcca cacctggata
      541 ttcttggtta tactataagc aaaagccacc aaaatgacat ctctataccg gcccgatcaa
      601 ataattatag gggagctcct gtataatgct gtaggcgatc tctataacaa ccgctttcga
      661 ctattccagg ttagtcctgt gatttggaac tatgttagtg acaatacgag tggaatctac
      721 agattattac taatagcccc atagaccctg tttctccaat ttagattgca ctaaacgggc
      781 tttcatttat gatcaagatt tttcatcagg gcataaatat ttacccaaca tcttataaaa
      841 tgacaaaaat atcaagcaag ataaccttta taattccgta ctttaggaaa ttaaataatt
      901 gacctttaga ggatctcttt ctaagaaagc ctttttccta tatttcctag gattaataac
      961 ttgtgcaata ttgtcttccg ctcatggcga gggcgatctg gcgtacgcaa tatggataaa
     1021 gattacgtct ccactcactg gtcagcaagt gcctatggga gaacttatga tttctgggga
     1081 gtcttccgac aatggaacct ccgagtgtca agtatatgtc gactggaata accagaagcc
     1141 atatcagcgg gcaactccta ctggacctgg cagcagtcag gacttctcca actggacttt
     1201 cacctacaat tcaagttatc acacaataca ggagggaata aacgacctca cctcaaaact
     1261 tacgtgtctt ggttctcctt caaatccgct tgctatgaat aagtggtata gcattaatgt
     1321 aaccggagtc aactctcagg ggtctgatgc agttcagctc cctctcccaa tacagccatc
     1381 tgtccaggat aggaagacaa acgtaaatga atcgacatct aaccaaattc aaataaacat
     1441 gcaagtggat aagaatccca tctcactagg cgcaagacaa tccctcacgg tggaagctat
     1501 tgattcaagt actggtttga aggatagcaa ggctaagatt ttcgttacag tcacagatcc
     1561 ttcaggatct at
//
LOCUS       DATLQL010000229         1358 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1651973, whole genome shotgun sequence.
ACCESSION   DATLQL010000229 DATLQL010000000
VERSION     DATLQL010000229.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1358)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1358)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1358
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1651973"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(271..>1358)
                     /locus_tag="VNB68_02415"
     CDS             complement(271..>1358)
                     /locus_tag="VNB68_02415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042625 - ATPase-coupled ion transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HVD36235.1"
                     /translation="GGEYLEIASKVNTIVFDKTGTLTKGKPSVTDIIDLSGMGEDELL
                     RLAAIAESGSEHPLGQAVVHEAKEKGILISNPNSFEAESGHGLRARYAEHTILIGNRK
                     LMENNNIPVTETIETTLKQLEIQGKTATLVTIDNKVAGVISLADTIKENAKEAIDSLK
                     LMGIEVIMLTGDNERTAKAVASQLGIGRVIAQVLPQQKEQAISKLQDEGRVVAMVGDG
                     INDAPALAKADLGIAIGSGTDVAKETGGIILIKDDLRDVVTALDLGRKTVSKIKQNLF
                     WAFAYNTGLIPIAGGILVPLMGVGIFEWLPMLAGLAMAMSSVTVVGNSILLGRYKPKL
                     ASKKPDRETIHTNEDLKEVYTLQPTPR"
BASE COUNT          379 a          282 c          224 g          473 t
ORIGIN      
        1 tgagcgtcga aagggcatta ttcagagtag ttggtatgta ttgtaatact tgtaaaccta
       61 ttatagaaaa acaactaaaa gatgagaaag cagtcaagaa attgacattg attatatgat
      121 agatagcatt atagtagaat acgatccatt agtcctaact aaagaacaga taaaaaatag
      181 attggaaaag tcaggttata aatttgttag aacaacaatt cccagataat gtcgttaagg
      241 caatccatca tttgggtgta taggcttcct tcatctggga gttggttgta aggtatagac
      301 ttcctttaaa tcttcattag tatggattgt ttctctatct ggttttttac tggctaattt
      361 tggcttatac cttccaagca atatcgaatt tcctactact gttacagagc tcattgccat
      421 tgctagacca gcaagcatag gaagccactc gaatattcca acacccataa gaggcactaa
      481 tatgccacct gctattggga tcagtccagt attatatgca aacgcccaga aaagattctg
      541 ctttatcttc gatactgttt ttcttcctag atcaagagct gtaacaacat cccttaaatc
      601 atcttttatc aatataattc ccccagtctc tttcgcaaca tctgttccag agcctattgc
      661 aattcctaaa tcagcttttg ctaaggcagg tgcgtcatta attccatctc ctaccatcgc
      721 aaccactctt ccttcgtctt gtagtttaga gattgcctgt tctttttgtt gtggtaatac
      781 ttgggcaatg accctcccaa tcccaagttg agatgcaact gcttttgcag ttctctcatt
      841 atctcctgtt aacattatta cttctattcc cattaatttg agagaatcaa tagcctcctt
      901 ggcattctct tttatagtat ctgcaagcga aatcactcct gcaactttat tatcaattgt
      961 aacaagagta gctgtttttc cctgaatttc aagctgtttg agagttgtct ctatagtttc
     1021 ggtaactgga atgttgttat tctccattaa ttttctattt ccaataagga ttgtgtgttc
     1081 tgcatatctt gctctaagac cgtgaccgga ttcagcttca aaggaatttg gatttgatat
     1141 caggatacct ttttctttgg cttcatggac aactgcctga cctaacggat gttctgatcc
     1201 tgattctgca attgcagcta gtctaagcag ctcgtcttca cccattccag acaaatctat
     1261 tatatcagtt acagaaggtt taccttttgt caaagttcct gttttatcaa atactattgt
     1321 atttactttg cttgctattt ccaaatactc tccaccct
//
LOCUS       DATLQL010000230         2060 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_54357, whole genome shotgun sequence.
ACCESSION   DATLQL010000230 DATLQL010000000
VERSION     DATLQL010000230.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2060)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2060)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2060
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_54357"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1036)
                     /locus_tag="VNB68_02420"
     CDS             complement(<1..1036)
                     /locus_tag="VNB68_02420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HVD36236.1"
                     /translation="MNPDALTLESFKRNGFDTLTEIQKKAFPVVNRRGNCLLVAPTGS
                     GKTEAAVIPIFSLMSQADPSSGSIRAIYVTPLRALNNDVFRRIINYAKKMNLDVQLRH
                     GDTTTSARRKLVTNPPDILITTPESLAVILTNKNLLHSLKELEWIVIDEVHELISNER
                     GAHLALSLERLQANSNRKVIRIGLSATISNLEDAARFISGVGRKCAILVDKTIRDYDV
                     DVNYVGGSVSNIARYILKYIKSHKISGSVLLFTNTRDEAEYIGSVLRNLDEMSTDVHH
                     GSLSREMREDTEIRLRSGMSGIVVCTSSLELGLDIGSVELVIHDGSPKQVSKLIQRIG
                     RSRHNSISSAK"
     gene            complement(1037..1177)
                     /locus_tag="VNB68_02425"
     CDS             complement(1037..1177)
                     /locus_tag="VNB68_02425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36237.1"
                     /translation="MNFDLLVTAAIGMFIIGLAAVMYYESLSPKSRSMEETKSETARE
                     ND"
     gene            1364..1636
                     /gene="sepF"
                     /locus_tag="VNB68_02430"
     CDS             1364..1636
                     /gene="sepF"
                     /locus_tag="VNB68_02430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0090529 - cell septum assembly [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein SepF"
                     /protein_id="HVD36238.1"
                     /translation="MQKEPIYLKAITLRDMSDLSGIKEDARKHTILIIRVTPLAHKDI
                     DNLRKVIEDLYSYVKSSGGDIARLGEERVVITPPNVKIWKGAYDLK"
BASE COUNT          598 a          429 c          385 g          648 t
ORIGIN      
        1 ctttggctga agatatgcta ttgtgtctgc tgcgacctat cctctgaatg agctttgaaa
       61 cttgtttcgg agagccatca tgtatgacta actcaaccga gcctatgtcc aaccccaact
      121 cgagcgatga agtgcatact acaattcccg acattccaga tcttaaacga atttctgtat
      181 cctcgcgcat ttcacgagaa agcgagccat gatgtacatc agttgacatc tcatctaaat
      241 tcctaagaac ggatccaatg tattctgctt catcccttgt gtttgtaaat aatagcacag
      301 accctgaaat tttgtgagac ttgatatatt tgagtatgta acgcgcaatg ttgctgactg
      361 accctcctac atagtttaca tcaacatcat agtcacggat tgtcttatca actagaatcg
      421 cacatttcct tccaacacca ctgatgaatc tggcggcatc ttccaagttt gaaatggtag
      481 ctgaaagccc tattctgatc acttttctat tgctgttggc ttgaagacgt tcaagactca
      541 aagccaggtg agctccacgt tcatttgaaa ttagttcgtg gacttcgtca attactatcc
      601 attccagctc cttcaatgaa tgtaataaat ttttgttagt taaaatgacc gccaaagact
      661 ctggcgtggt tatgagaatg tcaggtggat ttgtaactag ttttcgtcta gcactggtag
      721 tcgtatcccc atgtcttaac tgtacgtcta ggttcatttt ttttgcataa ttgattatcc
      781 tgcggaacac atcgttgttc aatgcacgaa gcggtgtcac gtaaattgcc cttatcgatc
      841 ctgacgaagg atcagcctgg gacattaatg agaaaatcgg aatgacggct gcttcagtct
      901 taccagaacc agtgggagcc accagaaggc aatttcctct cctatttact acaggaaatg
      961 ctttcttttg aatttccgtt aaggtatcaa aaccattcct cttgaatgac tctaatgtta
     1021 aggcgtctgg attcatctaa tcgttttctc tggcagtttc ggattttgtc tcttccatag
     1081 aacgggattt aggacttaga ctctcatagt acattacggc tgcaagacct attatgaaca
     1141 tcccgatcgc tgcagttacc aaaagatcaa agttcaatgt ccctaatcca atttctaatt
     1201 tactcctcag atttataaat ggattgattc tcgttacgat agcacaagga aattctacct
     1261 catatagaaa ttgaacccac aggttaaaaa gatttgaccg gaataactat ttggcaatta
     1321 ttgctcactc tttttgtcgt aactaaggaa tgatcttctc taaatgcaaa aagaaccgat
     1381 ttatcttaaa gcgataacgc ttcgggatat gagcgatctt agtggcatta aagaagatgc
     1441 ccggaaacac actatcctta ttatcagagt gactccgctt gctcacaagg atatagataa
     1501 tttaaggaag gtgatagagg acttgtatag ctatgtaaaa tcatccggag gtgatattgc
     1561 gagactgggc gaagagaggg tagttattac acccccaaac gtaaaaatct ggaagggagc
     1621 atacgatttg aaataacgat gtagaactta agacattttt catgattaaa cccaatttat
     1681 cataatagcc ttattgattc atggattgat ggatgttgtg tctgtatctt gaaaatttta
     1741 tttatactag tcgctaagac atggcatcta tttccacttc cgtggttagt gattatcttt
     1801 cttaacttag gtttaagcct actaacatag gccaatgttt gattgtagtc actatgactg
     1861 ctgaacccag gaatggtatc cacagcacac ttgatttcca acactttttt gcctatgcac
     1921 acttcacgat caccttacat taattgatgg aaaatcggtt acgttactga gtcaaatttg
     1981 cgatgatcct tcaagtaaac ttattataat ttctaatccc gtcccattta cacctagcac
     2041 taaaataatg gaaggtgatc
//
LOCUS       DATLQL010000231         1200 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_587889, whole genome shotgun sequence.
ACCESSION   DATLQL010000231 DATLQL010000000
VERSION     DATLQL010000231.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1200)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1200)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1200
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_587889"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..429
                     /locus_tag="VNB68_02435"
     CDS             <1..429
                     /locus_tag="VNB68_02435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36239.1"
                     /translation="SLVVISIGITFLWIILNTSCSCMSSSFYAEAEQGIGTFYANGTI
                     ISVPGSSNMVDENIPNATSASIGDGNWSLVVENGIVKKFNGSLVSSGKSGSSSMFHLN
                     DFKSSADKSIQLGSRGSNIIKGTVKIFSENRTSIIMLASR"
     gene            429..734
                     /locus_tag="VNB68_02440"
     CDS             429..734
                     /locus_tag="VNB68_02440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36240.1"
                     /translation="MISNLNRTNIVLDKDNSFQIKSPILGLVHLVDDAGGNIIMNNLA
                     RNVSETNQAENISQTKSDEEMGSASDLPTSESVANNVVSGDVGSEGGDVGSEGDDEG"
BASE COUNT          379 a          202 c          257 g          362 t
ORIGIN      
        1 tcattagttg tcatatccat tgggataacg ttcctttgga taatactcaa tacgtcttgc
       61 tcgtgcatgt ctagctcttt ttatgctgaa gcggagcaag gaattggcac attctatgca
      121 aatggcacta taatttcggt gccgggatca tccaatatgg tagatgagaa catcccaaat
      181 gccacttctg cctcaatcgg cgatggaaat tggagtctgg ttgtggagaa tggaattgtg
      241 aaaaaattca atggttcttt ggtaagtagc ggtaagtctg gatcaagcag tatgtttcat
      301 ctaaatgatt ttaaatcttc tgcagacaag tctattcagc tgggttcgcg cggatccaac
      361 ataattaaag gtactgtaaa gattttcagc gaaaacagaa cgagtataat aatgttggca
      421 tcacgataat gatatccaat ttgaatagga caaatatcgt gcttgataaa gataatagtt
      481 ttcaaatcaa aagtccaatt ttggggttag tacatttggt tgatgatgct ggtggtaaca
      541 ttattatgaa taatcttgca cgtaacgttt ctgaaacgaa tcaagctgaa aatatttcac
      601 agacaaaaag cgatgaggaa atgggtagtg cttcagatct accaacgtca gaaagtgtag
      661 cgaacaacgt tgtgtcaggt gatgttggat cagaaggagg tgacgttgga tcggaaggag
      721 atgatgaggg ttaaccaagt aatcagttca aaacaaatgt ttgagggtca tggtgatgac
      781 gttatcctca ctatgcctca tttaggacca atgtttcatc ttatggtccg atttttctaa
      841 tcctggaagc cagataacta aataagaatc gatatccatt ctcagtaacg aaatatatgc
      901 atagatagtt cagaagtaat atccgggcgg aattcactac gatcttaaat catatgccat
      961 aaaggaggta caaattgaaa agaattacta tttaaattcc aatgatacgg cgcgcttcag
     1021 ggaaataaac gctaggctta ctagcgaggt taattgttga gctgatatga caaaacatat
     1081 ctatctcaat gttttcaact acttattcta tggatggctt gaagtcaatg actcctgata
     1141 tgtccaataa gtctttctca agtgccatca atctagcatc ttcagtttct ccgtcttgat
//
LOCUS       DATLQL010000232         1637 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2008633, whole genome shotgun sequence.
ACCESSION   DATLQL010000232 DATLQL010000000
VERSION     DATLQL010000232.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1637)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1637)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1637
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2008633"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            588..1013
                     /locus_tag="VNB68_02445"
     CDS             588..1013
                     /locus_tag="VNB68_02445"
                     /inference="COORDINATES: protein motif:HMM:NF038353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxLYD domain-containing protein"
                     /protein_id="HVD36241.1"
                     /translation="MLRQSIDKSTIYDLFFFVILMVLIISLVITPSVFAQQKPGSVSN
                     NKNNILKILSHNSFIDIAGYFHVVGEIENVSPNPVELVKVIGTFYDVNGKVVGTDFSF
                     TDPAILSAGDKAPFELILTSATIPVKEIDNYRLSIDWQK"
     gene            complement(990..>1637)
                     /locus_tag="VNB68_02450"
     CDS             complement(990..>1637)
                     /locus_tag="VNB68_02450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36242.1"
                     /translation="AERYRVALVHTRGRFTEYGKDLIEAAKKAGSVVGILVDYDAYGE
                     EIAKGSRTDTPKIGITRDTIKWLQQNGYPDLMEAEIEEEYSPAIYTSDEYLKTKRIEL
                     DSIAAKVGVAGLWKYILHRLQSPEIAPQGFDLNQAVTIPANEVFYPKAVSDLLTYLNN
                     YTDRILSEEREVIELELEGIRELTEIKSEEKDIEERLRNVIEFWLPLLSFLPIYT"
BASE COUNT          480 a          322 c          285 g          550 t
ORIGIN      
        1 tcaagtagat tgcaagattt cataagagag taccgcaaac aaatcgtgaa actaccaaat
       61 tgggaattca ctgcagcggg tcgcagtgaa cgggatatat tagatttatt caaagcccca
      121 ctcataatgt atgacctaaa agctaaacgg acaagtaata attgaaattt acggaatttt
      181 ggaacgatat gcaatatcag caattgttaa tctatttaac gcagatcctg ataaaaagtc
      241 gacgatagaa ctactaaccc gacaatgttc cttagtcaaa ttagcaaaaa tccctgttat
      301 actcaagctt tggcataaag aagatatcac atttgctgag aatttatatg atcattcgtg
      361 gaactacata tctttttact ttagatttag tttgtatatg atccatagcc tacactaaca
      421 ctgggtctga agttttggca tcttccttct tatgttctca attctatgaa tttatcacta
      481 ggagtttggt gttatgaaag agaagaatcc attgctatta taacataaat caaggtttac
      541 cattttattt taaaacctaa aatataacgg taagtgatat cacttgtttg cttagacaat
      601 ctatagacaa atctacaatt tatgatttgt ttttcttcgt aatattaatg gtcctgatta
      661 tatctttggt cattactcca tcagttttcg cgcagcagaa acctggttcg gtttcaaaca
      721 ataagaataa catcctgaag atattgagtc ataattcctt catagatatt gcgggatatt
      781 ttcacgtagt aggagagata gaaaatgtat caccaaaccc tgtggagctt gtcaaagtta
      841 tcggaacttt ctacgatgtg aatggcaagg tggttggaac agactttagt tttacagatc
      901 cagctatatt gtctgcaggc gataaagcgc catttgaatt aatactgact tctgctacca
      961 tcccagtaaa ggaaattgac aactatagat taagtataga ttggcagaaa tgagagaagc
     1021 ggcaaccaaa attctatgac atttctcagt ctttcctcga tatctttttc ttctgacttt
     1081 atttctgtta actctctgat gccctctaat tcaagctcta tcacttctcg ctcctcgcta
     1141 agtattctat ctgtataatt attaagatat gtcaataagt cgctcacagc cttaggatag
     1201 aatacctcgt ttgctggaat tgttactgct tgattaaggt caaagccttg tggtgctatc
     1261 tctggtgatt gtagtctatg aaggatatac ttccaaagtc ctgccactcc aacctttgcc
     1321 gcgatactgt ctagttcaat tcgctttgtt tttagatact cgtccgaggt atatattgcc
     1381 ggtgaatatt cttcttcgat ctctgcttcc attagatctg gatagccgtt ctgctgaagc
     1441 cactttatag tatctctagt aataccaatt ttaggtgtat ctgttcttga gcccttggct
     1501 atctcctcgc catatgcgtc gtaatctacg agaatcccaa caactgaacc tgctttcttt
     1561 gctgcttcta tcaggtcttt accatattct gtaaaccttc ctctggtatg tactagcgca
     1621 acgcgatacc tttcagc
//
LOCUS       DATLQL010000233         2573 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_588031, whole genome shotgun sequence.
ACCESSION   DATLQL010000233 DATLQL010000000
VERSION     DATLQL010000233.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2573)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2573)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2573
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_588031"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..491
                     /locus_tag="VNB68_02455"
     CDS             <1..491
                     /locus_tag="VNB68_02455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase family protein"
                     /protein_id="HVD36243.1"
                     /translation="SAVKFRLSFPMGIFELADYTGLDVIHKATSEMFSRDKKVIFPHP
                     RIKELFEQGKYGKKSGSGFYSYSGEQYERVSLSEEDSNAYDPIKLFAVAFNNAAWLIT
                     NKVCTLEDLEIALKLGMGLRNPLFRTGEQFGIKRVVDTLQDLHAKYGDFYKPDNYLLS
                     LR"
     gene            complement(554..1060)
                     /locus_tag="VNB68_02460"
     CDS             complement(554..1060)
                     /locus_tag="VNB68_02460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00725 family protein"
                     /protein_id="HVD36244.1"
                     /translation="MRKLQIAVIGYNSDKSNSLTDKIAYQVGREIAKADAALICGGLG
                     GVMENACKGAKEHGGLTVGIIPQEDFTYANNFCDIVIASGIGYARDFIVATSADGIIV
                     VGGGVGTLLELCVGYMLKKTIVTIPSTGGTAEIYSGKYLDERKRILILAASDAESAVQ
                     LIVSSSKK"
     gene            1344..>2573
                     /locus_tag="VNB68_02465"
     CDS             1344..>2573
                     /locus_tag="VNB68_02465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004013 - adenosylhomocysteinase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylhomocysteinase"
                     /protein_id="HVD36245.1"
                     /translation="MSQIEMNYRIKDISLAENGKKKIDWAEVHMPVLVNLRKRFEAKL
                     PLKGIKVAGCLHVTKETGVLIRTIKALGAEIAWCGCNPLSTQDDVAASVAQEGISIFA
                     SRGVSNEQYYDDIHSTMKIKPNITIDDGADLTVEMHNDGYVQDEPVYGGTEETTTGVI
                     RLRAMQSAGKLKYPIIAVNDAETKHDFDNVYGTGQSALDGIIRATNILIAGKNVVVAG
                     YGHVGKGISKRADGLGANVVVTEIDPIAALKAKLDGYGVLPMNAAASVGDIFITTTGC
                     KGVITGQHIGKMKDGALLANAGHFNVEISVDDLEATSVSIKQINDNNQEYLLKNGNKI
                     YLIGEGRLVNLAAAEGHPSEVMDMSFANQLLAVLKLANSKGSLSPSVYDVDKSQDQEI
                     AKSKLESMGLQIDVLTPE"
BASE COUNT          815 a          475 c          535 g          748 t
ORIGIN      
        1 attctgcagt aaaatttagg ctatcatttc cgatgggcat ttttgaattg gctgattata
       61 cgggcttgga tgtaatccac aaagcaactt cggaaatgtt ttctcgagac aaaaaagtta
      121 tatttcctca ccctagaatc aaagaacttt ttgaacaagg aaagtacgga aagaagtcgg
      181 gatctggatt ttattcctat agtggtgaac aatatgagag agtttcgctc tctgaagaag
      241 attcaaatgc gtatgatccg ataaagttat ttgccgttgc gtttaataat gcggcgtggc
      301 tcattacaaa taaagtctgc acgttagaag atcttgaaat tgccttgaaa cttgggatgg
      361 gcctaagaaa tccattgttc cgtacaggag aacagttcgg tataaaaagg gtcgtagata
      421 ctctacagga tctgcatgcg aagtacgggg acttttataa accagataat tatttgttgt
      481 cccttcgata gcatatatcc aaggcaataa ttaccgagaa cgtgatgaaa tttcgatcgc
      541 cgcacacaat attctatttt ttactactac tgactattaa ttgaactgca ctttccgcat
      601 cactagctgc caatataagt attctttttc gttcatcaag gtatttgcca ctatagattt
      661 ctgcggttcc tccggtactg gggatggtga ctattgtttt tttaagcata tagcctacgc
      721 acagttctaa gagagtccca acacctccac ctacgacaat gatgccatct gcagaagttg
      781 ctacaataaa atctctggcg tagccaattc ctgaagcaat aacaatatca caaaaattgt
      841 tggcgtaagt aaaatcctct tggggaataa ttccgacagt tagtccccca tgttcctttg
      901 cacctttgca cgcattttcc atcactcctc caagacctcc acagatgaga gctgcatccg
      961 cctttgctat ctctcttcca acttgatagg ctatcttatc ggttaaagaa ttagatttat
     1021 cactattata gccaattacg gcgatctgaa gttttctcac aattagaatt catgactgtt
     1081 tttcttatac tttctgatat cgttaagatt acaaaagaaa actaaataaa atacctgttg
     1141 ccacttacaa agttaatttt aagccctaga aacttataaa ctgaattaaa tctagttaaa
     1201 tctagtgtgt ttttgttgaa tcttgtgggt tccaatttct aaaactaaaa aaacaaacaa
     1261 caataatctt actaaagtga tatgtcgtaa atgtacacaa gtctgaacaa cagcagcact
     1321 gataaagtaa tatatggtgt gaattgtcac aaattgaaat gaattatagg atcaaagaca
     1381 tctcgcttgc cgagaatggg aagaaaaaaa ttgattgggc cgaagttcat atgcctgttt
     1441 tggttaatct acgtaaaaga tttgaagcca agttgccatt gaagggcata aaagtggcag
     1501 gatgtcttca cgtgactaag gaaacgggag ttctgattcg aactataaag gcattgggag
     1561 cagaaattgc gtggtgtggt tgtaatcccc taagtaccca agatgatgtt gcagcatctg
     1621 tagcccaaga aggaatttca attttcgcaa gtagaggtgt ttccaatgaa cagtattatg
     1681 acgacatcca ctctacgatg aagatcaaac ctaacatcac tatagatgat ggtgccgatc
     1741 tgacagtcga gatgcataac gatggttatg ttcaagatga gcctgtgtac ggaggaactg
     1801 aagaaacgac gaccggtgtg ataagactac gtgccatgca aagcgcagga aaattgaagt
     1861 atcctattat cgctgtaaat gatgccgaaa ctaaacacga ttttgacaat gtctatggta
     1921 caggtcaatc agcgcttgat ggcataatac gcgcaacaaa tattctcatt gcaggaaaaa
     1981 atgttgtggt ggctggttac ggacatgtgg gaaaaggtat atctaaacgt gcagatggtc
     2041 ttggtgcaaa tgtggtggtt acagagattg atccaatagc agctttgaag gcgaaattag
     2101 atggttatgg cgtactgcct atgaatgcgg cagcatctgt aggagatatt tttataacca
     2161 ctactggatg caaaggtgtt ataacaggtc agcatatcgg gaagatgaaa gatggtgcac
     2221 tcttggcaaa cgcaggtcat tttaatgtag aaatctctgt agatgatctg gaagccacgt
     2281 ctgtttctat taaacagatt aatgacaaca atcaggaata tttactcaaa aatggaaaca
     2341 aaatatatct gattggtgaa ggcagactcg ttaaccttgc tgccgcggaa ggacatccct
     2401 ctgaagtaat ggacatgagc ttcgccaatc agctccttgc tgttttaaag ttggctaatt
     2461 cgaaaggatc tctgtctcca tctgtttatg acgtagataa atctcaagat caagaaattg
     2521 ctaaatctaa gctagagtct atgggcctcc aaatagatgt tcttacgcca gaa
//
LOCUS       DATLQL010000234         1005 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2184539, whole genome shotgun sequence.
ACCESSION   DATLQL010000234 DATLQL010000000
VERSION     DATLQL010000234.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1005)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1005)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1005
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2184539"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            480..>1005
                     /locus_tag="VNB68_02470"
     CDS             480..>1005
                     /locus_tag="VNB68_02470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36246.1"
                     /translation="MSSPSHMDSKINEEKQKKTTDVQVVPVVANKYSVSKKITKQNFI
                     IEKRWVTGTAKIEVPMKYEEIYVNGKKLGSKGGLESILSSMKGKNGAGGKKGGSNEKV
                     VRKKKESLKGELAPLFEGSSNTQEILPLFGEEILIRKRIRQVGEVVITKRKVTESIKI
                     PLSTRKEKVIIRYPD"
BASE COUNT          363 a          165 c          224 g          253 t
ORIGIN      
        1 aagcggacac aagctggttg aaaaaatgac gttgatttca cctgagacgt ttgcgtgatg
       61 aatgtcaata ataacataga aactgatact ctgtagcttt ttagttaagc atttgcttgg
      121 accacatgtg cgactgcact gtggagtagc aaagtgagag catgctatcg cctacacaaa
      181 acttctaata taatgcacta cctcatcagc atctgtttct cagagcttac gctcgacatc
      241 agaaagcgag agagaaaaga agtatgtaga taatattatc aatgaatatc gcttttcttt
      301 cttattatct tctcgagaaa cggctctact gccgacgacg tcaaggagct atcaacatag
      361 actcttgctc tcaaagcttt ttttattatt gcttttatga acgcatttaa ttaatacgca
      421 aatcaacgtg tcctaatttt tatatcccat aaaataccat cttaaaagag gaagcgataa
      481 tgtcgtcgcc atcacatatg gactcaaaga taaatgaaga gaagcagaaa aaaactacag
      541 acgtacaagt tgttccagtt gtcgctaata aatattctgt gtcaaagaag attacaaaac
      601 agaacttcat aatagaaaag agatgggtga cgggtactgc aaagatagag gtgccaatga
      661 agtacgagga gatatatgtc aacggtaaga aattaggttc caaaggtgga cttgaaagca
      721 tattatcctc aatgaaagga aagaatggtg ctggtgggaa aaagggggga agcaatgaga
      781 aggtggtaag aaaaaagaag gagtctctca agggagaatt ggcgccgctt tttgaaggta
      841 gttcaaacac tcaagagata cttccactct ttggagagga aatattgatc aggaagagga
      901 tacgacaggt tggagaagta gtgataacaa agagaaaagt aacagagagt attaagatac
      961 cactaagcac caggaaagag aaagttatca taaggtatcc cgatg
//
LOCUS       DATLQL010000235         1077 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_231963, whole genome shotgun sequence.
ACCESSION   DATLQL010000235 DATLQL010000000
VERSION     DATLQL010000235.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1077)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1077)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1077
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_231963"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..436)
                     /locus_tag="VNB68_02475"
     CDS             complement(<1..436)
                     /locus_tag="VNB68_02475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIM barrel protein"
                     /protein_id="HVD36247.1"
                     /translation="MKVHVGFHVSIAGGISNSVDNALKIGSRAFQIFSRNPRGWSAKP
                     LAENDIMMFRTKLSGSRIGSKSVIVHMPYLPNLAAPDSEFYKKSIDAFAEELQRCNTL
                     GVAYLVIHLGSHLGRGREYGIKQLLKACNYALDNYKSKSRGDT"
     gene            526..>1077
                     /locus_tag="VNB68_02480"
     CDS             526..>1077
                     /locus_tag="VNB68_02480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36248.1"
                     /translation="MSIKLGTADLAKYPFLNEASDYIRQTHFDLEEFNRPEMKHIISR
                     AAEMLESEIIRGEVYKRLDKYEIEILTFLVTLIIVRSIGMEVILKKHSLFEAIRAENF
                     LVEDLKKEKNDERKHLLLFKIFNELFKINVDISSDDKRLFKVKISDYLERSSHFHEQQ
                     WKLVNRLVHRGYVYLDADETVRLI"
BASE COUNT          347 a          193 c          213 g          324 t
ORIGIN      
        1 gggtatcgcc gcgagacttg gatttgtagt tgtcaagagc gtaattacag gcttttagca
       61 actgcttaat accatattct cgtcccctgc ctaagtggct tccaagatga atcacaagat
      121 atgcgacacc caaagtatta catctttgta attcctcagc aaaggcatct attgatttct
      181 tgtagaattc gctatctgga gcagctaagt ttggtagata aggcatatgt actattactg
      241 atttacttcc tatcctgcta ccagacaatt ttgttctaaa catcatgata tcattctctg
      301 ctaaaggctt ggcagaccaa cctcttggat ttctactgaa tatctgaaac gctctggaac
      361 caatcttcaa tgcattatca acagagttag atattccgcc agcaatagac acgtgaaagc
      421 caacatgaac tttcatacca aagtttgcag gaagagatcc ttgttaaaaa tattccgaag
      481 cttgatggtg gtatttttat tttagtattg acataagctc acatcatgtc tattaagctt
      541 ggaactgcgg atttggccaa gtatcctttt ctcaacgaag cgtcagacta tattcgacag
      601 acgcattttg acctagagga atttaataga cctgagatga agcatattat tagtagagca
      661 gcagagatgc ttgaatcaga gattatcaga ggagaagtgt acaaaaggct agataaatac
      721 gagatcgaaa tactcacttt tcttgttaca cttataattg tcaggtcaat tggaatggaa
      781 gtaattttga agaagcattc tttgtttgaa gcgataagag ctgaaaactt tttagtcgaa
      841 gatctcaaga aagaaaaaaa tgacgagagg aaacaccttc tgcttttcaa gatttttaat
      901 gagctgttca agatcaatgt tgacataagc tcagatgaca aaagattgtt taaagtaaaa
      961 atcagtgatt acctggagcg ttcttcacat ttccacgaac agcaatggaa actggttaat
     1021 agattagtac atagaggata tgtgtaccta gatgctgatg agaccgtcag actgatt
//
LOCUS       DATLQL010000236         2496 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_941169, whole genome shotgun sequence.
ACCESSION   DATLQL010000236 DATLQL010000000
VERSION     DATLQL010000236.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2496)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2496)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2496
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_941169"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(377..1102)
                     /locus_tag="VNB68_02485"
     CDS             complement(377..1102)
                     /locus_tag="VNB68_02485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CbtA family protein"
                     /protein_id="HVD36249.1"
                     /translation="MRILLFLAITILSGALAGTILGIINLGLVEPYIDQAIGLEIQNS
                     VSSGENVDLAEIAHYRIWQKGGEIFAGTVYGISLGALFGIIFGYARNALPGDNNKKKA
                     LFLAGILWFVLYLVVALKYPANPPAVGDPETIYYRESLYVAFIAISGFTALGLALLWN
                     RVKINSKKIVFPLVYAGIMIAAYMTMPANPDSISISMELVQSFRVWTALTVGIFWGLL
                     GIIFGSLWDKFVRPEEPRLTTFH"
     gene            complement(1125..1340)
                     /locus_tag="VNB68_02490"
     CDS             complement(1125..1340)
                     /locus_tag="VNB68_02490"
                     /inference="COORDINATES: protein motif:HMM:NF021038.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CbtB domain-containing protein"
                     /protein_id="HVD36250.1"
                     /translation="MSNLKLMTKEEPGEMRIAVGILVAILIFTMFIVGYDQGQLFSIA
                     QGQEAFDNMWIHEFTHDMRHAAGFPCH"
     gene            1528..2094
                     /locus_tag="VNB68_02495"
     CDS             1528..2094
                     /locus_tag="VNB68_02495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4443 domain-containing protein"
                     /protein_id="HVD36251.1"
                     /translation="MHVFKTLQLIEEKGHVSRDILRNELSLGEGTIRTLLRHLKMENL
                     VESSNAGTKLTEKGHLFFSDIKASIPSEMKLPKCSVALGKFNYAVILKQMSSAVKSGI
                     EQRDAAIKLDASGATTLIFRNRKFLLAGTKLDALKNEHKIRKLLMVGLNPMDEDVIII
                     GSDRISEKRAEFAAKSAALLTIKNHEKH"
BASE COUNT          815 a          471 c          477 g          733 t
ORIGIN      
        1 ccattattct gcttgtcgcc cttctgttca ctcagtagtc gttagcaaga taacgtgatt
       61 aacccatgtt cacaattaaa atcaagaact atgctggata gaaaagtcat atcgtgttag
      121 agcctccaga gtacggtaag cattaaaatg gtattacgga ctagtaattc cattagtaac
      181 acataatgaa ttaaactgaa atattcagaa cttgtgattc atttgaaatg agccaaagga
      241 gtattgtttt tgacacaaat ttttggcccg ctattaacta agattaagaa ctagaagagt
      301 atgctataaa gcaagtccga atgcggtgga actcataacg ctagcattgc aataggaacc
      361 ccctgggtcg ataaacttaa tgaaaagtgg tcaatctagg ttcctcaggg cgtacaaatt
      421 tatcccaaag tgaaccaaag atgattccca agagtcccca gaagattccg acagttaacg
      481 ctgtccaaac tctgaaactc tgaacgagtt ccattgatat gcttatggag tccggatttg
      541 caggcatagt catatatgca gcaatcatta ttcctgcgta aactaatggg aacacaatct
      601 ttttcgagtt tatcttaacc ctgttccata agagtgctag acccaatgct gtaaaaccag
      661 aaattgcaat aaaagctaca tacaaggatt cacgatagta aattgtttca gggtctccaa
      721 ctgccggtgg gtttgcagga tattttagag ccactacaag gtacaaaaca aaccacaaaa
      781 taccagctaa gaacaatgct ttcttcttgt tattgtctcc cggtaatgca tttcttgcgt
      841 acccaaaaat gattccaaac aacgctccta gcgaaattcc atatactgtt ccagcaaaaa
      901 tttcaccacc tttttgccaa atacgatagt gtgcgatttc agctaaatct acgttctccc
      961 ctgaggaaac tgaattctgt atttctaagc caattgcctg gtcgatgtac ggttcaacca
     1021 gtccaagatt gatgatacca aggattgtac cggctaacgc accagaaaga attgtaattg
     1081 caagaaaaag cagtattctc aaatattata cctactgaac gaaactagtg acagggaaat
     1141 ccagcagcat gtcgcatatc atgggtgaac tcgtgtatcc acatattatc aaatgcttcc
     1201 tgaccttgag caatgctaaa cagttgacct tggtcatagc caacaataaa catggtaaaa
     1261 atcaaaattg caaccagaat tccaactgcg attcgcatct cgccaggttc ttcttttgtc
     1321 attagtttga gattagacat tcttttttgt aaaaacttcg gtgtatttaa agtatcggat
     1381 ggtttagcca agcttcgagc caaggtaatt agaataatat agatataact ttctactact
     1441 ctcatactag tattgcatac gtatgttaga acgcttcagt tggttgcaag caaatattca
     1501 ccgagcagag ctctttcata tgatgtcatg catgttttta aaactttaca gcttattgag
     1561 gagaagggac atgttagcag agatatcctg cgaaatgaat tatctctcgg tgaaggaaca
     1621 ataagaacac ttcttagaca cctaaagatg gagaacctgg ttgaatcttc caatgctgga
     1681 acgaagctga ccgaaaaagg gcacttgttt ttttctgaca ttaaagcctc aattccgtcc
     1741 gagatgaaat taccaaaatg ctctgtggct ttaggaaaat tcaactatgc cgtaatttta
     1801 aaacaaatga gttctgcggt aaagagcgga atagaacaaa gagatgctgc aataaagttg
     1861 gatgcatcag gtgcaactac tcttatcttc aggaatagga aatttctttt agccggaaca
     1921 aaacttgatg cactaaagaa tgagcacaag atacgtaagc tgctcatggt aggtttaaac
     1981 ccaatggatg aagatgtaat aataattggg agcgaccgga tttctgaaaa gagggctgaa
     2041 ttcgctgcaa agagtgcagc tcttctaaca atcaagaatc atgagaagca ttagggtttc
     2101 tattgaatac agaatcatct agatatattt gataacctcc aagtaattta gtacgattat
     2161 gttactaatt acaataacat aatattcggg ttcggtggaa ctgataagcc tagcactcta
     2221 attttggaac ccaccctatt atttgcgggt tcggtcgaaa ccaagtggaa tttcacacta
     2281 gttcattctt gtaaaaaatt ggaataataa agaaataagt cccatgaggg atgggtttat
     2341 tttttatttt atagtattct tgactctctc ataggggttt ggagaagctc tccgatttca
     2401 ttatgcatct ttaagagatt caatcctttc tcggtggttt tgtaggtttg tgagccttct
     2461 aaatattata gtaaattatt ttcaataagt atagaa
//
LOCUS       DATLQL010000237         1298 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_589127, whole genome shotgun sequence.
ACCESSION   DATLQL010000237 DATLQL010000000
VERSION     DATLQL010000237.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1298)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1298)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1298
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_589127"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..240
                     /locus_tag="VNB68_02500"
     CDS             <1..240
                     /locus_tag="VNB68_02500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36252.1"
                     /translation="WFSSSIFYWKLGCSIYYIKNIVIGVSSMSINESMWAISAEIQIL
                     KVFFWNYLRPPSDYIENIIQYFFFQPFCVRCHIAQ"
     gene            complement(319..1236)
                     /locus_tag="VNB68_02505"
     CDS             complement(319..1236)
                     /locus_tag="VNB68_02505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36253.1"
                     /translation="MLKIKIRNTSGLVTGHAKLPILVAVIVSMACLVPLSMPAPRAYS
                     QSSNDAILLDDPQRSQYFEVPIPDSDSQSNDGPVPLDDSTMSQYFEVPVPDSDDKGFF
                     YLTAPDGWTKMQIQPYIDGIETVSAAEFCAPEGCGEGSLQLYAYLSTPGSFFPPGGAA
                     QPEQVFQGIVDYSEGLGIDTTQVVPIEGPNPQVDVYIEGIDDQGQKMKGFSDLLLSEQ
                     PSVLYEAIFFTKEANWDHYYPIFLDIQKTIKAVYPTDPNVICHESQTSECLGMVSGMM
                     GENTRTMNTIIDNMDVTGCSQNKYWDPAC"
BASE COUNT          379 a          264 c          248 g          407 t
ORIGIN      
        1 tggttctcca gctcaatttt ctattggaaa ttaggatgca gcatctacta cataaagaat
       61 atcgttatcg gtgtgtcttc aatgtcaatt aacgaatcta tgtgggccat ttcagctgaa
      121 atccaaattc taaaggtttt cttttggaat tatctgcgtc caccttctga ttatatcgaa
      181 aatataattc aatatttctt cttccaaccc ttctgcgtgc gatgtcatat tgctcaatag
      241 agttgttgtg aaaaggatga tggataaaaa taaaaacaaa aacaaaaaaa tttgagaacc
      301 cctcaattta tgatacgtct agcatgcagg atcccaatac ttattctgtg agcagccagt
      361 aacatccata ttgtctatga tagtgttcat tgtacgagta ttttcaccca tcatacctga
      421 caccattccc aagcattctg atgtttgact ttcgtgacag attacatttg gatcagtagg
      481 atagactgcc ttaatcgttt tttgtatgtc cagaaaaatg gggtagtaat gatcccaatt
      541 agcttcttta gtaaaaaata tcgcttcata taggacacta ggctgctctg atagtagaag
      601 atctgaaaat cccttcattt tttgtccttg gtcatcaata ccttcaatgt aaacatccac
      661 ttggggatta ggtccctcaa taggaaccac ctgggtagtg tcaataccta agccttcact
      721 ataatcgaca atgccttgga atacttgttc tggctgcgct gcaccgccag gaggaaagaa
      781 gcttcccgga gtagaaaggt aggcgtataa ttgtaatgat ccttcgccgc aaccctctgg
      841 agcgcaaaac tctgcagcgc ttacagtctc tataccgtct atatatggtt gtatttgcat
      901 tttagtccaa ccatctggag cagttaaata aaaaaatccc ttatcgtccg aatcaggaac
      961 tggtacttca aaatattggc tcattgtaga atcatccaaa ggtactggac catcgtttga
     1021 ttgcgaatcg gaatcaggaa ttggtacttc aaaatattgg ctcctttggg ggtcgtccaa
     1081 aagtatcgca tcattgcttg attgcgaata agcccttgga gcgggcattg agagaggtac
     1141 caggcatgcc atggacacaa taactgctac taagatcggt aattttgcat gtcctgtcac
     1201 aaggcctgag gtattacgta tttttatttt taacatatgc aagtattatc aagactcaat
     1261 tcttctgtct tgctaagagg ctctattcat ttgtcaaa
//
LOCUS       DATLQL010000238         1146 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1829406, whole genome shotgun sequence.
ACCESSION   DATLQL010000238 DATLQL010000000
VERSION     DATLQL010000238.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1146)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1146)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1146
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1829406"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..268)
                     /locus_tag="VNB68_02510"
     CDS             complement(<1..268)
                     /locus_tag="VNB68_02510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HVD36254.1"
                     /translation="MMIVVFSTLVLTIALLGSTLDKILTDAIRYDVGNAISQGKMQFQ
                     NSEERQNFINSQIQLQIKTLGLDEPWYSPKRFLNTLIKVITLDLG"
     gene            complement(500..>1146)
                     /locus_tag="VNB68_02515"
     CDS             complement(500..>1146)
                     /locus_tag="VNB68_02515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36255.1"
                     /translation="EMIKSELQKMKNENFIPSALKGIVNINDAGKRYDSTINWITRHH
                     NAVIGNGPFYLDSYNPTGAVISIKSFRDQSYPFSQGHWASFEIPKLATVEKVEAPQFI
                     SMGHPTKIQVQVKVGGKPSNDALVNYFVLDKNSKIAIHGVAQHLTSTSESDGIFTVLL
                     NGTETSRLSFGPAVLKIFANSNEASRPDVYTTTLIVINNSTSLTEPKHGVNLLN"
BASE COUNT          324 a          208 c          227 g          387 t
ORIGIN      
        1 ttcctagatc aagtgttatc acttttatga gagtatttag gaatcgtttg ggagaatacc
       61 atggttcatc caggcctagt gtttttatct gaagttggat ttgactattg atgaaattct
      121 gccgctcctc ggaattctgg aattgcattt ttccctgact tatagcgtta cccacatcgt
      181 atcttatagc atctgttaat atcttatcta acgtcgaacc aagaagggca atggtcagaa
      241 ctagggtaga aaatacaact atcatcatgt tgactgacct tttaagaaga aagcgataga
      301 atcctgacat gatatcaagt aatatctgta atccgatttg tattaatagt ctgtgttaaa
      361 ccaagtggtc tattgagttg acaacagttt aatactggcc tatgcaatag ccgtaaatga
      421 tagaacggtc agcttgaaat gtaacggagt agttgatatg acactttaca ggtcagttgc
      481 ttgtcgtaat acgatctggc tagtttagca agtttactcc atgttttggt tcagtaagtg
      541 aagtgctgtt attaatgaca atgagagtag ttgtatatac atccggtctt gaggcttcgt
      601 tactgtttgc aaaaattttt aacaccgcag gtccaaaact aagtctagaa gtttcggtcc
      661 catttaggag aaccgtgaaa ataccatcgc tctctgaagt actggtcaaa tgctgcgcga
      721 caccatgaat ggcaatcttg ctgttcttat ctaatacgaa ataatttacc aatgcatcgt
      781 tgcttggctt tccaccaact ttcacctgta cttgtatttt agtgggatgt cccattgata
      841 taaattgtgg tgcttctacc ttttcaactg ttgcaagttt tggaatctca aaggaagccc
      901 aatgaccttg tgaaaatgga taagattgat ctctaaacga tttaatgctg atcacggcgc
      961 cagtaggatt atagctatcc aagtaaaacg gaccattccc aattactgcg ttatgatgtc
     1021 gagttatcca atttattgtg ctgtcatatc tttttccagc gtcattaatg tttacaatgc
     1081 ctttcaaggc ggatggaata aaattttcat ttttcatttt ttgtagttca gacttgatca
     1141 tttcgg
//
LOCUS       DATLQL010000239         3073 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_941802, whole genome shotgun sequence.
ACCESSION   DATLQL010000239 DATLQL010000000
VERSION     DATLQL010000239.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3073)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3073)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3073
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_941802"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1598
                     /locus_tag="VNB68_02520"
     CDS             <1..1598
                     /locus_tag="VNB68_02520"
                     /inference="COORDINATES: protein motif:HMM:NF017482.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="NFACT RNA binding domain-containing protein"
                     /protein_id="HVD36256.1"
                     /translation="RYAPPPPRGIDVYDITLEQLRAMREDKQSDSLDVVKWIGRKISI
                     PKKYVEEIAIRAGISSLTVGQLSEEDMERLYVIIKEIISDIVSEKNHQPYVILGQNEK
                     AIDAIPIKTAHLSKLNVKKTPSYMDAVDEVLSNDLMDLGRNIRTIEIDERITALQHDI
                     AEQIKAKELVLSKANLIRNVAHKLMQLSYQGVQSITESSVNKLLAENSANIILEKGLK
                     YLEILEELILIESNLPKLSSALFTRAKEMERGNIAVEQSKARLEAQIQELQNQTISVR
                     KKIIIKQQTSKEWYERYRWFITTDGLLAIGGRDASSNSAIIRKHLTENDIVFHAEVHG
                     SPFFIIKNTGNLEETGLSLQQVAVATVSFSRAWKDGISSADAYWVTPDQIKKGAPPGQ
                     YVPKGSFVIEGKRNYMKGLELRMAIGVARLENRYTVVCGPADAVKKSAIIYAILLPGG
                     LQPLNVAKKIKSEFVRILGTSSNNEDLVDFVKTIMLEDFLRLMPSGQSKISLIANGEN
                     KVSSQNNSTSDMQIGPSVAALHD"
     gene            1673..2218
                     /locus_tag="VNB68_02525"
     CDS             1673..2218
                     /locus_tag="VNB68_02525"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HVD36257.1"
                     /translation="MTTRVLVSDIMNSPVVSASPHASIKDIASKMKQEQVGSIIIMEN
                     ENPLGIVTDWDIVSNAVVNDVKPSMLKASDIMQTLFTIEGGEGITEAARMLRRHKIKR
                     LGVTNKNKVVGIISASDVISVTPDLVDVISEKAAIVRGEIGRSAGNISGYCDDCGEWS
                     DLLQYNEGTFSCEECRGETIH"
     gene            2169..2771
                     /locus_tag="VNB68_02530"
     CDS             2169..2771
                     /locus_tag="VNB68_02530"
                     /inference="COORDINATES: protein motif:HMM:NF014037.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mut7-C RNAse domain-containing protein"
                     /protein_id="HVD36258.1"
                     /translation="MRAPFHARSAGGRQFTNYTPTFLADAMLGSLARKLRVFGYDTIY
                     LSDVKDEVVLRVGITQNRVILTCDKELFRRIVKVGASGVLLECSNDLDSIVKILCKYS
                     IKYIDCESMNSRCSACNGLLVEKASSDIATQVPPRILKMHKYFLNCSDCNKIYWQGKQ
                     FMKIKALIKDINYKIKKEDRENNSKDLVEKINMQTKRLSF"
     gene            2861..>3073
                     /locus_tag="VNB68_02535"
     CDS             2861..>3073
                     /locus_tag="VNB68_02535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36259.1"
                     /translation="MSSISPLEQTVSKVLIQKEAELIAQIESAYHESLANLESSRTTL
                     HAEYNQILDAAKKQAENLKRQIIGSSR"
BASE COUNT         1081 a          519 c          646 g          827 t
ORIGIN      
        1 ttagatatgc tccgccacct cctcgaggaa ttgacgtata tgatattacc ctcgaacaac
       61 ttcgagccat gagagaagat aagcagtcag atagccttga tgtagtcaag tggataggac
      121 gaaaaatttc aatcccaaaa aaatatgtgg aagaaatagc aataagggct ggaatatctt
      181 cgctgacagt tggacaatta tccgaagaag atatggagag gctatatgtg attataaagg
      241 aaataatttc agatattgtc agtgaaaaaa accatcagcc atatgtgatt ttgggccaga
      301 atgaaaaggc cattgatgca atacctatca aaactgcaca tctttctaaa ttaaacgtaa
      361 aaaaaactcc ttcatatatg gatgcagtag atgaagtttt aagcaatgat ctgatggatt
      421 tagggcgcaa cattagaact atagaaattg atgaacgcat tacagcatta caacatgata
      481 tcgcagagca gattaaggca aaggagttag ttctttcaaa ggctaacctc attagaaatg
      541 ttgcccataa gttaatgcaa ctctcatacc agggtgttca gtctattact gaatcctctg
      601 tgaataaatt gcttgctgaa aactctgcaa atatcatctt agaaaaagga ctaaaatatt
      661 tagaaatact agaagaactt attcttatag agtccaatct gcctaaatta tcctcagctc
      721 tatttaccag agcaaaggaa atggagcgag gaaatattgc agtcgaacag tccaaagcaa
      781 gattggaagc gcaaattcaa gaattacaaa atcaaacgat atcggtccgg aaaaagatta
      841 ttatcaaaca acagacctcc aaagaatggt acgaacgtta tcgttggttc ataactacag
      901 acggtttgtt agctataggc ggcagagatg cctcctctaa ctctgcaatc attcgcaaac
      961 atttaacaga aaatgacata gtatttcatg cggaggtaca tggttcgcca ttctttataa
     1021 ttaaaaatac tggtaaccta gaagagacag gacttagtct gcagcaagtg gctgtagcga
     1081 cagtttcatt cagtagggca tggaaggatg gcatctcgag tgctgatgcg tactgggtga
     1141 cgccagatca aataaaaaaa ggtgcacctc ctgggcaata cgttcccaaa ggttcattcg
     1201 tcattgaagg caagcgaaat tacatgaaag ggctggaatt aagaatggcg ataggagttg
     1261 ctcgattaga gaatcgatac accgtggttt gcggacctgc tgatgctgta aagaagagcg
     1321 caataattta tgcaatttta ttaccaggag gattgcagcc attgaacgtg gcaaagaaaa
     1381 ttaagagcga atttgtgaga atattgggaa ctagttcgaa taatgaagat ctagtagatt
     1441 ttgttaagac aataatgctt gaggatttcc ttcgtctaat gccttcaggc caatcaaaga
     1501 tttccttaat agcaaacggt gaaaataaag tatcaagtca aaataactcg acttcggaca
     1561 tgcaaatagg acctagtgtg gctgctttac atgattagca aagtaataaa agccaggatt
     1621 ttgattcaat aatgtggtaa aaaaaccggt tcgggaacac agcgacgcta atatgaccac
     1681 aagggtacta gtgagcgata ttatgaatag tcctgttgtt tctgcttctc ctcacgctag
     1741 cattaaagac atagcttcaa aaatgaaaca agaacaggtg ggcagtatca taataatgga
     1801 aaatgaaaac ccattaggga ttgttactga ttgggatatc gtttcaaacg ctgtagttaa
     1861 tgatgttaaa ccaagcatgc ttaaagcttc tgatatcatg cagaccttgt ttaccatcga
     1921 aggaggagaa ggtataacag aggctgctcg tatgttacgg agacataaaa ttaagcggct
     1981 aggtgtaact aacaagaaca aagtggttgg gattatatcc gcttctgacg ttatttcagt
     2041 tactccagat ttagtcgatg tcatttcaga aaaagcagct attgttcgag gggagatagg
     2101 acgctctgct ggaaacattt ctggatactg cgacgattgt ggggaatggt ctgatctctt
     2161 acaatacaat gagggcacct tttcatgcga ggagtgcagg ggggagacaa ttcactaatt
     2221 acacacctac ttttcttgct gatgcaatgc ttgggagcct tgcacgcaaa ctacgtgttt
     2281 ttggctatga taccatatac ctatctgatg taaaagatga agttgtgcta agagttggaa
     2341 taactcagaa cagagttata ctgacctgtg ataaggagct attcagaagg attgtaaaag
     2401 taggtgcgag cggcgtttta ctagaatgtt ccaacgactt agatagcatt gtcaaaattt
     2461 tatgtaaata tagtattaaa tatattgact gtgaaagtat gaactcaaga tgttcagctt
     2521 gtaacggatt gctggttgag aaagcgtctt cagacatcgc aacgcaggta ccccctcgta
     2581 ttctaaaaat gcataaatac tttctcaact gttcagattg taataaaatt tattggcagg
     2641 gcaaacagtt tatgaaaata aaggccctga taaaggatat aaactataag ataaaaaaag
     2701 aagacaggga aaataactca aaagatttgg tcgagaaaat taatatgcaa actaaaaggc
     2761 tgagctttta atttatatta tattataata gctccaagtc tgagtgattt tgatctaaag
     2821 tagcaaaaga ttaaaatctc gtctctcaag aacattctat atgagctcaa tttcaccact
     2881 agaacaaact gtaagtaaag tcttaataca aaaagaagct gaattaattg ctcaaattga
     2941 atctgcatat cacgagtcat tggccaatct tgaatcgtca agaacaacgt tacatgcaga
     3001 atataatcaa attttggacg ctgcaaaaaa acaagcagaa aacctcaaaa gacaaatcat
     3061 tggttctagc agg
//
LOCUS       DATLQL010000240         1893 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_589860, whole genome shotgun sequence.
ACCESSION   DATLQL010000240 DATLQL010000000
VERSION     DATLQL010000240.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1893)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1893)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1893
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_589860"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            322..1062
                     /locus_tag="VNB68_02540"
     CDS             322..1062
                     /locus_tag="VNB68_02540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HVD36260.1"
                     /translation="MLDKHLVNDFKWLPKSESFRDNMLNDSQLINLVKSARELSTKRK
                     FTQSVELTMVLKDIDVKKGFALNEVVPLPNKPGRQASICIIASGDMGTRARKAEVDKV
                     IEPEELNRLGTNKREARKIVRAYDFFLADTSLMSSVGRSLGQFLGPKGKMPTPFPYGA
                     PIETIAERFRGSVRVRTKNQLNLSAKIGDEKMEDEQLVANAGVIISTIEKKLPQGEKN
                     IQNAIIKFTMGRPSKLSGIVKEKKKGVH"
     gene            1062..>1893
                     /gene="rplJ"
                     /locus_tag="VNB68_02545"
     CDS             1062..>1893
                     /gene="rplJ"
                     /locus_tag="VNB68_02545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HVD36261.1"
                     /translation="MSVDGNKTNRTHYPRRKQNLYQQMQELPKSYSVIALSSMTKVRA
                     AQLMKIRKKFHNDIKIKIIKNRVVQKSFEKINGIVGLDQLSSKLEGQCALMFTNISPF
                     KLNLVFDQNKVYLAAKGGDVTKMDITIPSGNTGISPGPVLSEFKEVNVPTKIDQGTIW
                     VSKDTRVAKAGDVITQKTAALLSKLNIKPIEAGIAVNFAISDGLVFGENDLKIDLKAY
                     ANELIISHCQALSLAVESAYTTSETIKPLLNKANRLAESLASTSGYISPSTVKLVLAR
                     T"
BASE COUNT          654 a          342 c          407 g          490 t
ORIGIN      
        1 cactgtaacg cgcgacgcct cgctattttc caagaacaag caggtgagtc gttctcttgt
       61 tgtgcctaag atccaagaag aattgtcgta tagaaccagt cataaaaata gtttataagg
      121 gctcatctcc aatttttgta ataccatgcg ttaggttgga tttaaagcat gagaacctga
      181 gaacttcggg ctcgtagctc agcatggata gagcgcctgc cttctaaaga actactatga
      241 agaaagccgg aagtcgtggg atcgaagccc cgcgggcccg cttttaattt aataaagagg
      301 ctattttcat tgaggaattg aatgctagat aagcaccttg taaacgattt taaatggctg
      361 ccaaaatctg aatcttttag ggacaacatg cttaatgata gtcagcttat aaatttggta
      421 aaatctgcac gcgaactgag tacaaaacga aaatttacac agtctgttga gttgaccatg
      481 gtgctaaaag acatagacgt gaaaaaagga tttgccctca acgaggtcgt tccattacct
      541 aataaaccgg gtaggcaggc aagtatctgt atcatagcat caggagacat gggcactcga
      601 gcacgtaaag cagaggttga caaagtgata gaacctgaag aattgaatag actaggaact
      661 aataagaggg aagctaggaa aatcgtcagg gcttatgatt ttttcttagc tgatacatca
      721 ttaatgtcga gcgttggtcg ttctttaggt cagtttttgg gtcccaaggg caagatgcct
      781 acaccattcc catacggcgc tccaatagaa acaattgctg aaagattcag aggttctgtt
      841 cgtgttagga caaagaatca actaaaccta tctgcaaaaa taggagatga aaagatggag
      901 gatgaacaat tagtggcaaa tgctggagta atcatctcta caatcgaaaa aaagcttcct
      961 caaggtgaaa agaatataca gaatgcaatt atcaagttca ctatgggaag accgagcaaa
     1021 ttatcgggaa tcgttaaaga aaagaaaaaa ggtgtacatt aatgtcagtg gatggaaata
     1081 agaccaatag aactcattac cctagacgaa agcaaaattt gtatcagcaa atgcaggagc
     1141 ttcccaaatc ttatagcgtt attgctcttt caagtatgac caaggtccgc gcagcgcagt
     1201 tgatgaaaat acgaaagaaa tttcataatg acattaagat aaaaataata aagaataggg
     1261 tagtccagaa atctttcgaa aaaatcaacg gtatcgtggg attggatcaa ttgtctagta
     1321 aattagaagg tcagtgtgcg ctgatgttta caaacattag cccttttaag ctgaatttag
     1381 tttttgatca aaataaggtt tacttagctg caaaaggagg cgatgttact aagatggata
     1441 ttacaattcc atcgggtaac acaggtatat caccaggtcc tgtactttcc gaattcaaag
     1501 aagtaaacgt acctacgaag atagatcaag gtacaatttg ggtaagcaaa gataccagag
     1561 ttgctaaggc aggtgatgtc ataacacaaa agacagcggc tctactctca aagttaaata
     1621 ttaaacctat cgaagctgga attgcagtaa attttgccat ctcagatggc ttagtatttg
     1681 gagagaatga tctgaagatt gacctaaaag cttatgcaaa tgaattgatt atatctcact
     1741 gtcaggcatt atcattagca gtcgaatcgg catatacaac ttcagagact attaaaccac
     1801 ttctcaacaa ggcaaacaga cttgcggagt cattagcatc cacatcaggg tacatctctc
     1861 ccagcacagt gaaactagta ttagctagaa ccc
//
LOCUS       DATLQL010000241         1286 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1299744, whole genome shotgun sequence.
ACCESSION   DATLQL010000241 DATLQL010000000
VERSION     DATLQL010000241.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1286)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1286)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1286
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1299744"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(63..866)
                     /gene="larE"
                     /locus_tag="VNB68_02550"
     CDS             complement(63..866)
                     /gene="larE"
                     /locus_tag="VNB68_02550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent sacrificial sulfur transferase
                     LarE"
                     /protein_id="HVD36262.1"
                     /translation="MSDDIDFAKVVSWFKNDHDRAMVALSGGVDSAVVALAAKQALGD
                     NVLAVTADYSTLSREELKSADNVAKEIGINHITVKYNELENENFVRNDILRCYHCRME
                     LGAYLVSEANKRNIPLIVDGTNLDDLGDYRPGISAMRANGIRSPLVELGMNKNKVRKM
                     AKSHALSTYDKPSNSCLASRIPTGITVTMERIKRIEMSEIIVKSIFALKQVRVRDHLD
                     LARIEVGLNEIHLLFDPVKLNLLNSKLKSLGFRYVTIDLGGYHSNETLM"
     gene            complement(859..>1286)
                     /gene="larC"
                     /locus_tag="VNB68_02555"
     CDS             complement(859..>1286)
                     /gene="larC"
                     /locus_tag="VNB68_02555"
                     /EC_number="4.99.1.12"
                     /inference="COORDINATES: protein motif:HMM:NF014072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="nickel insertion protein"
                     /protein_id="HVD36263.1"
                     /translation="NLIEVLYKKGATDVVILQGITKKNRPVFVIKVISDNVKLQSIID
                     TLFIESGSLGIRIRETNRSTVVRSTVTVPVSISKEYFHVRVKVSKDHDGKVTHVKPDF
                     DDVKKISEKMKIPYRRSSEIVQNQVIESIINEETPGLDV"
BASE COUNT          371 a          277 c          210 g          428 t
ORIGIN      
        1 taagttttga tacataccct ggctaactga ttaaccaaca atggattaca ataattagga
       61 agttacatta atgtctcgtt agaatgatag ccgcctaaat caatagttac atatctaaat
      121 ccaagacttt tcaatttcga gttcaacaaa ttcaatttga cgggatcaaa tagtaaatgg
      181 atctcattca gacctacttc tatgcgagcc aaatccagat gatctcttac tcgtacttgt
      241 ttcaacgcga agatagattt cacaattatc tcagacattt caattcgttt tattcgttcc
      301 atagtgacag ttattcctgt aggaatcctc gaagcaagac aggaattaga aggtttgtcg
      361 taagtagaca aggcatgaga tttcgccatt tttcttacct tattcttgtt catacctagc
      421 tcaactagag ggcttctaat tccattagcc ctcattgcgc tgatcccagg tcggtaatcc
      481 cctaaatcgt ctaaattggt accatctact atcaatggga tgtttctttt gtttgcttct
      541 gaaaccaaat aagccccaag ttccatgcgg caatgatagc acctgagtat gtcgtttctc
      601 acaaaatttt cattttctag ttcattatac tttactgtta tatggttaat cccaatttct
      661 tttgcaacat tgtctgcgga ttttaattct tctctggata atgtcgaata gtctgccgta
      721 actgccaaca cattatctcc caatgcttgc ttcgcggcaa gggccacgac agcactatct
      781 acgccaccag aaagagcaac catcgctcga tcatggtcat ttttgaacca agaaactact
      841 ttagcgaaat ctatatcgtc agacatctaa acctggggtc tcctcattaa tgatgctctc
      901 tataacttgg ttttgtacaa tctcagacga tctcctgtat ggaattttca tcttttcgga
      961 tatcttttta acatcatcga aatcaggctt gacgtgagta actttaccat cgtgatcttt
     1021 ggatactttt acgcgaacat gaaaatattc cttacttata gacacgggta cagtcactgt
     1081 tgatctaaca actgtagacc tatttgtttc tcgaattcga atgccaaggg agccactttc
     1141 gataaaaaga gtatcgatta tagattgcaa cttgacatta tctgaaatga cttttattac
     1201 gaatacgggt ctattctttt tcgttatccc ctgaagtata acaacatcgg tagcaccttt
     1261 cttatagagt acctcgatta aattac
//
LOCUS       DATLQL010000242         1514 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_234599, whole genome shotgun sequence.
ACCESSION   DATLQL010000242 DATLQL010000000
VERSION     DATLQL010000242.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1514)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1514)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1514
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_234599"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1496
                     /locus_tag="VNB68_02560"
     CDS             <1..1496
                     /locus_tag="VNB68_02560"
                     /inference="COORDINATES: protein motif:HMM:NF014910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HVD36264.1"
                     /translation="CEEMSDDMGKDIAKITSCSTSWDEWSKKIYSVDASSYQIEPMVI
                     STPANEFEVQAISKYAAERRVPLTCRGAGTGLLGQCLSNGIILDLVQNMNKIIEIGEG
                     YVIVQPGITKHKLDKELEKRGKFIPPNPASSNYCTLGGMIANNSSGPYTLGYGSIMNY
                     LIGVKTVYSGGEFGYAYDNGPYDSTVKRVIDIISSNLDLIQRSYPKVSKNSCGYRLDS
                     IIENDMIHPQRIFLASEGTLGIVTSAKLLILDVPEFRHLCLLSFPTVQAASASIPFIL
                     KYKPVATELLDRSTMGKISNVHDTLYDSCTLLVEFHGNGKTLMKQKIKEFEYEVSQFS
                     RVIESTNDKTGIEKLWNERKNALNNVLKQTIGSRKPLGMIEDTVLDPSLLLDFVNFLI
                     DVYRKYNVSYAIYGHAGDGNLHTRPIIDTEQKTGIDTMQMITSDVFRFILGHGGSISG
                     EHGDGLARVKHVFQMYGSEVYSLFVKTKQIFDKNNIMNPGKKVLFET"
BASE COUNT          508 a          258 c          318 g          430 t
ORIGIN      
        1 attgtgaaga aatgtcagac gatatgggga aagatattgc aaagataact tcatgttcca
       61 catcttggga cgaatggagc aaaaaaatct attctgtaga tgcaagttct tatcaaatag
      121 aaccaatggt cataagtact ccagcaaatg aatttgaggt ccaggcgatt tcaaaatatg
      181 ctgcagagcg tagagtacca ttgacatgca gaggagctgg cacgggctta ctcggtcagt
      241 gtctttcaaa tggcataatc ttagacttag ttcagaatat gaacaagata atagagattg
      301 gagagggata cgtaattgta cagccaggaa tcacgaaaca caaactggac aaagaacttg
      361 aaaaacgagg caaatttatt ccgcctaatc ccgctagcag caactactgc actttgggag
      421 gcatgattgc taacaactcg agcggcccgt atactttagg atatggcagc ataatgaatt
      481 atcttatagg agttaaaaca gtttattcag gaggcgagtt tggatatgcg tatgataatg
      541 gtccttatga cagtaccgta aagagggtta tagatattat atccagcaat ttggatttga
      601 ttcaacgatc ttatccaaaa gtgagtaaga attcttgcgg atatcgtctt gattccatca
      661 tcgagaatga tatgattcat cctcaaagaa tctttttggc ctcagaaggg acactgggaa
      721 ttgtaactag cgcaaagtta ttgatattag atgtgccaga atttagacac ctttgtcttc
      781 tttcattccc aacagtccaa gctgcttcgg cttcgatccc atttatctta aaatacaaac
      841 cggttgcaac agaattgctt gaccgttcta ctatgggtaa gatatcaaat gttcatgaca
      901 ctctttacga ttcctgtaca ctattggtcg aatttcacgg aaacggaaag accttgatga
      961 agcaaaaaat caaagaattt gaatatgagg tctctcaatt ttcccgagta atagaaagca
     1021 cgaacgataa gactggtatt gaaaaacttt ggaacgagag gaaaaatgct ctaaataatg
     1081 tgctaaaaca gactatagga tcaagaaaac ctctaggcat gatagaagat actgttttag
     1141 atccgtccct tttactagat tttgtaaatt tcctaattga tgtctacaga aaatataatg
     1201 ttagttatgc gatctacgga catgctggtg atggtaatct acacactagg cctattattg
     1261 acacagagca gaaaacagga atagatacaa tgcagatgat aacaagtgac gtttttcgat
     1321 ttattttagg acatggcggc agcatttccg gagaacatgg tgatggtctt gcgcgagtaa
     1381 agcatgtgtt tcagatgtat ggttccgagg tatattcact ttttgtcaaa acaaagcaaa
     1441 tttttgacaa gaacaatata atgaatccag gtaaaaaggt tttgtttgaa acctgataaa
     1501 cttggaaata ttcc
//
LOCUS       DATLQL010000243         1999 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1831677, whole genome shotgun sequence.
ACCESSION   DATLQL010000243 DATLQL010000000
VERSION     DATLQL010000243.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1999)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1999)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1999
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1831677"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            75..1154
                     /locus_tag="VNB68_02565"
     CDS             75..1154
                     /locus_tag="VNB68_02565"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HVD36265.1"
                     /translation="MTTKFGFTQGLNVARLGLDETQIMTACQIADRLDYDSIWAMDHS
                     NVPQWKNAVVNDAWLLLAAIGAITRKVELGTCVTDAIRRHPSAIALSTITLDRLTNGR
                     AILGIGAGEAQNVVDFGIEFSKPVTKFKEQLELIELLFKSDPDNRVDYNGQYYKLTNA
                     CLQAKSIRKPRPPIYIAAGAPKTLGLCAAYGDGWIPIGYTPALFKHHADVIRENARKI
                     GRDLSGFQFANDVDVYFTDDGEEAWNKMKNAVKVSLYKPELLTVHNIEQDSEFDFRRY
                     FTEYAMNKPELMEQMKRAALKIPDSVARTAIGVGRPDDVIEMLERFIEAGTNHFIIRF
                     WGEGYFKNIELFGRKVIPYFRDKEK"
     gene            complement(1172..>1999)
                     /locus_tag="VNB68_02570"
     CDS             complement(1172..>1999)
                     /locus_tag="VNB68_02570"
                     /inference="COORDINATES: protein motif:HMM:NF019159.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase RNA specificity
                     domain-containing protein"
                     /protein_id="HVD36266.1"
                     /translation="NVCQDHAFELLDSGHILGSTGLLIEDDLYYTGDLSIRKRAFMKP
                     AVIPKAKTLIIESTFGHEDYVFPRSESIIHEANILISEMYSQGRPIVLLGYPLGKAQI
                     LTQLFAQWEPIFVEDSIYKMNLLYSELGIDITCHTPYSMAENKGSLSSNKPWILIAPL
                     NSTRNGFLDYVKRKYEPTTVGFSGWGIKPNFKYLLGLDHCFPFSDHCDYNDLISFVKR
                     CSPEKVYTFHGFIDEFAHTLRCLGFDATSLKSKQELEGYATESMVLTDYFDKKSQDN"
BASE COUNT          641 a          364 c          417 g          577 t
ORIGIN      
        1 gcccgtatat atgacaaaag aaatccttac aatctatata tactgacggt atatataccg
       61 attcaatacg taaaatgacg acaaaatttg gttttactca aggcctaaat gtggccagac
      121 tgggactcga tgaaacccaa atcatgacag catgccagat tgctgatcgt ttggattatg
      181 actcaatatg ggctatggac cattctaacg ttcctcagtg gaagaatgct gttgtgaatg
      241 acgcatggtt gttacttgca gcaattgggg caataactag aaaggttgaa cttggtacat
      301 gtgtgactga cgcaataagg agacatccat cagcaattgc tttgtctact attacactgg
      361 atcgtctaac aaacggtaga gcaatccttg gaataggcgc cggtgaggcg cagaacgtcg
      421 tggattttgg gattgaattt agtaaaccag ttacaaaatt caaagagcag ttagaactta
      481 tagaattatt gttcaaatct gatcctgata acagagttga ttataacgga caatattaca
      541 agttgaccaa tgcttgtctt caagcaaaaa gtataagaaa accgcgccct ccaatttata
      601 tcgcggcagg agctcccaag acacttggac tttgtgctgc ttacggggat ggatggatac
      661 ccattggata tactccggca ttattcaagc accatgcgga tgtaattagg gaaaacgcaa
      721 gaaaaatagg aagagatcta tctggcttcc agttcgcaaa cgatgtggat gtttacttta
      781 ccgatgatgg agaagaagct tggaataaaa tgaaaaatgc tgttaaggta agcttataca
      841 agcctgagtt gcttaccgtg cataatatcg aacaggattc agaatttgat tttcgaaggt
      901 acttcacaga atatgccatg aataaacctg aattaatgga acaaatgaaa agagctgccc
      961 tgaaaatacc tgatagtgtt gccagaacgg cgattggtgt tggaagacct gatgatgtta
     1021 tagaaatgct tgaaagattc attgaagctg gcacaaatca ttttatcatt aggttctggg
     1081 gtgagggcta tttcaagaac atcgaattgt ttggaagaaa ggtgatacct tatttcagag
     1141 acaaagaaaa atagaatata ttgctgggta gttaattatc ctgagatttc ttatcaaaat
     1201 aatctgttag caccattgat tccgtagcat atccttctag ttcctgctta ctcttgagtg
     1261 aggtagcatc aaatcctaga catcgaagag tatgtgcgaa ttcgtcgata aaaccatgaa
     1321 atgtgtagac cttttcaggg ctacatcttt ttacaaatga tatgagatca ttataatcac
     1381 aatgatcact aaacggaaag caatgatcta gtcccaacaa gtatttgaaa tttggcttaa
     1441 tgccccatcc gctaaaacca acagttgttg gttcgtattt tctcttcacg taatccagaa
     1501 acccatttct ggtcgaattt aacggtgcaa taaggatcca tggtttgtta gatgataacg
     1561 aacctttatt ctctgccata gagtatggtg tgtgacaagt tatatcgatc ccaagctctg
     1621 aatagagaag attcattttg tagattgaat cttcgacaaa aattggttcc cattgagcaa
     1681 aaagttgagt aaggatttgt gccttcccaa gtgggtaccc caacaaaacg atcggtcgac
     1741 cttgggaata catttcagaa ataagaatat tggcctcatg tattatgctc tcgcttctag
     1801 gaaaaacata atcttcatgt ccaaacgtgg attcaatgat taatgtcttt gctttgggga
     1861 tcactgcagg tttcataaac gccctctttc gaattgacag gtccccagta tagtataaat
     1921 catcttctat taatagtccc gttgaaccca aaatatgtcc agagtccaaa agttcaaagg
     1981 catggtcttg acatacatt
//
LOCUS       DATLQL010000244         1516 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2367962, whole genome shotgun sequence.
ACCESSION   DATLQL010000244 DATLQL010000000
VERSION     DATLQL010000244.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1516)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1516)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1516
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2367962"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..429
                     /locus_tag="VNB68_02575"
     CDS             <1..429
                     /locus_tag="VNB68_02575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36267.1"
                     /translation="ARATTTSPSSTSPVVNLENLLLPSKLPGNSLLLLFNADPFRIIG
                     GHTTLNSPSKNIKLVAASISDKGVDHAVVLDLKKALDNANTKDALYRTDLGEVISGTN
                     LFTKKHDVVSDFTDLLLWNNSKSPITFGDSSAVAMTVVFK"
     gene            complement(1147..>1516)
                     /locus_tag="VNB68_02580"
     CDS             complement(1147..>1516)
                     /locus_tag="VNB68_02580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36268.1"
                     /translation="TEVKFEIINADASTFEYNSLDLSNPMFFISGLPESGEMLATALI
                     SRFCKKAEPKIKNRAGFNFMGSHIMKHFSRDTTKWGWGKVIEIFNLEVIECLTLPTYW
                     TNDLPTDTAYVYTSTKYSSS"
BASE COUNT          483 a          301 c          289 g          443 t
ORIGIN      
        1 gccagggcaa ccacaacttc cccaagtagt acatcaccag tagtgaacct cgagaaccta
       61 ctactgccgt ccaaactccc aggcaattcc ttgcttctgc tttttaatgc ggaccctttc
      121 cgcattatag gcgggcatac tacgctcaat tcaccgagta aaaacataaa acttgtagca
      181 gcgtctattt cagataaagg agtagaccat gccgtagttt tggatcttaa gaaggcactt
      241 gataatgcaa atacgaaaga tgcattatat cgaactgatc ttggagaagt aatcagtggg
      301 actaatttat ttaccaagaa acatgatgta gtgtctgatt ttacagactt actactttgg
      361 aataacagca agtcacctat cacgtttggt gacagtagtg cagtggcgat gactgtggtt
      421 ttcaaataga cattgcagtc tgttctatgc ataagttata ctgaagaggc tattgaagcc
      481 agaaatagtc tagtgatgta aaaagcgctt actatcggta aaagaaatgc tataactgtt
      541 cacaccaatt tcttgattta ttggctattt gtttagcagt gttaagattc aaataccgct
      601 gtgcaatatg tgactatata ttaacgacct ctgaacaaaa tgcgaaaaaa ttaattttta
      661 tatggtatgc ttaaaatcgc ttcttggata caatggtggc tgtcaaatca gctgccgtgg
      721 gttgattatc tagaccattc acaatttttc caaaaattca tcagaccaga ggtataaatg
      781 agaactggtc ggaaccccga gatatcctaa gtatacagag actaaagaaa ccgttatgtg
      841 tttgtaccgg gaactatgat accttttttt gtcgatatta tcgactataa aatataaaat
      901 acaaaatgta aaattgggat cgcagaaaaa acgcgtatca ggcaattaga atgctttttc
      961 aaaactagtc ccgaattatc gcgatacctt agacaccgat cgcacaccta ccaaagaaag
     1021 acccacaggt gacaagtgtt caatgttagc aaccaagcta gtcacgcata attagaaagt
     1081 agtgacggct acatcaagcg atgatctgat attaccttaa gtggttcatc gctaactgca
     1141 gcaattttat gagcttgaat atttggtact tgtataaaca tatgctgtat cagtgggcag
     1201 atcattggtc cagtatgttg gcaaagtcag acactcaata acctcaagat tgaatatttc
     1261 tatcacttta ccccatcccc atttggtagt atccctcgag aaatgcttca ttatatgact
     1321 acccataaaa ttgaagccag cgcgattctt tattttcggc tccgcttttt tacagaacct
     1381 ggaaatcaac gccgttgcta gcatttcacc tgattcaggt agtccagaaa taaaaaacat
     1441 tgggtttgac agatctaatg aattgtactc gaacgtggaa gcatcggcgt ttatgatctc
     1501 gaatttaacc tctgtt
//
LOCUS       DATLQL010000245         2264 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_58426, whole genome shotgun sequence.
ACCESSION   DATLQL010000245 DATLQL010000000
VERSION     DATLQL010000245.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2264)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2264)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2264
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58426"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            357..1730
                     /locus_tag="VNB68_02585"
     CDS             357..1730
                     /locus_tag="VNB68_02585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HVD36269.1"
                     /translation="MRKFDLIVIGSGSGLDVAKAIAQHGPKVAIVERSKMGGTCLNTG
                     CIPSKLLLHSADVAETIKRAHLFGINTNGFSVDFRRIVERVNTIIDNDSEKIKNALEG
                     LDNPKLISKECKFIGVKTLSCEGNNEELTAEKILIAAGSRPKIPDIEGLNNSSYLTSD
                     EALRLTKLPNVLTIIGGGYIACELAHFFGTLGTEIHIVQNKDRLIPSEDQDVSKKITE
                     LYFKKYNLHLDCTAQSVSRKGSTYNIKTRNVSGEVVEIVSDQLLIAAGRTPNSDTLDL
                     EKTGVLTNDEGYITTDDYLETNVRGIFALGDVIGRYPFKHSANLEAQYAYHNILNQDE
                     KIAVDYTAMPHAIFCSPQVAGVGYTEQELSRMKVEYKKSYHEYIHTAMGKAILDEARF
                     VKFMTNAKSKEILGCHMLGTEASILIHEVIPIMRNGNGTIGKIVNSIHVHPALSEVVA
                     KAAFELM"
     gene            complement(1909..>2264)
                     /locus_tag="VNB68_02590"
     CDS             complement(1909..>2264)
                     /locus_tag="VNB68_02590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36270.1"
                     /translation="HRRRKRLEKEFLESNYSLNLDKFGWRRVDFFITTKNGKTDDVAI
                     DLFGLNEVTFVGKSIGAHTIDLRAETIVKGNEQLLDLLEKIKGMGGVTDAIWSEIVKV
                     MGKKRSIPSNIIDQL"
BASE COUNT          731 a          420 c          449 g          664 t
ORIGIN      
        1 ctttggcacc ttggcttgca gcattaggag ttataaccgc cgtagtgact agatgcaggg
       61 tggaagtcga aaaatcactt gataactagc ggtacatggt tgtccgtttt ctgtgatgta
      121 cttcacatct atcataactg ttatcaaaag cgaccacagt ttatgttgtt ctgtcctccg
      181 ttccaaaaat tctattatga atcctgtatt ttcttagaat tcgaagttgt ggaagcctcc
      241 taattcacag tattgaatat ttggacttct tgtaaacttg tactaataag atataagttc
      301 tgctagaaaa gaacttaata tcacaaattt atattattag tactcataca agatacatgc
      361 gaaagtttga tcttatagta attggaagcg gatctggtct agacgtagca aaggcaatag
      421 ctcaacatgg ccctaaagtt gcaatagtgg agaggagtaa aatgggtggt acttgcctca
      481 acacgggttg tataccatca aaattgcttt tacatagtgc tgatgttgct gaaacgatca
      541 agagggctca tcttttcggc attaatacaa atggattttc cgtcgatttt cgaaggatag
      601 ttgaaagagt aaatacaata attgacaatg actcagaaaa gataaaaaac gcactcgaag
      661 gtttggataa tcccaaactc atttccaaag aatgcaaatt cattggcgta aagacgctat
      721 cttgtgaagg taacaatgag gaattgacag cagaaaaaat attaattgct gctggttcaa
      781 gacccaagat tccagatatc gaaggcctaa ataattccag ctatctcact agtgatgaag
      841 cccttcggct tacgaaactg ccaaatgtac tcacaataat aggtggtgga tatatagcat
      901 gcgaattagc gcattttttt ggtacactag ggacagaaat tcatatagtc caaaacaaag
      961 acagattgat accatcagag gaccaagatg tttccaaaaa aataacggaa ttatatttca
     1021 aaaagtataa cttgcatttg gattgtacag cgcaatctgt ttcgaggaaa ggtagtacgt
     1081 ataatatcaa aacaagaaac gtatctggcg aggttgtaga aatagtttca gatcagttgc
     1141 ttattgctgc aggtagaacg ccaaactcag atactcttga tctagaaaaa accggcgtac
     1201 taacaaatga tgaagggtat atcactacag atgattatct cgaaacaaat gttagaggga
     1261 tatttgcact gggtgatgtt attggccgtt atccgtttaa acatagtgct aacctggaag
     1321 ctcaatacgc ttatcataat atcctaaatc aagatgaaaa gatagctgtt gactacaccg
     1381 caatgcccca tgcaattttc tgttctcccc aagtcgctgg cgtgggttat actgaacagg
     1441 aactgagtcg tatgaaggta gaatataaaa aatcgtacca tgaatatatc cataccgcga
     1501 tgggtaaagc tatattagat gaagcaagat tcgtgaagtt catgaccaac gcaaagagta
     1561 aggaaatact cggttgtcat atgttgggta ccgaagcatc aattcttatt catgaagtga
     1621 tacccattat gcgaaatggg aatggcacaa ttggtaaaat tgtgaactcc atacatgttc
     1681 atccagcact gtcggaagtt gtcgcaaaag ctgcatttga gctaatgtag attgagtccg
     1741 tcgtttctta atatcatcta ggtgacaaag gtgctctaca ctggaattca ttttcgggag
     1801 agactcatgc aacttcagcc gggatttgaa gaaacaacaa tggatcatat cttgtttaac
     1861 agcgtagtac tgtttagtag taatcaaaag ccggactgat gcaatgatct aaagttgatc
     1921 tatgatgtta cttgggatgg atctcttctt tcccattact ttgacaattt cactccagat
     1981 ggcatcagta accccaccca tgccttttat cttttctagg aggtcaagaa gttgttcgtt
     2041 acccttaaca attgtttcag ctctcagatc aatcgtatgg gctccgatac tttttcccac
     2101 aaacgttact tcatttaacc cgaaaagatc aatggctaca tcatcagtct tcccgttctt
     2161 tgttgtgata aagaaatcaa cacgccgcca accaaattta tctagattca aagaataatt
     2221 tgactccaaa aattcttttt ctagccgttt acgtctacgg tgaa
//
LOCUS       DATLQL010000246         1552 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_770579, whole genome shotgun sequence.
ACCESSION   DATLQL010000246 DATLQL010000000
VERSION     DATLQL010000246.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1552)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1552)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1552
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_770579"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            186..1415
                     /locus_tag="VNB68_02595"
     CDS             186..1415
                     /locus_tag="VNB68_02595"
                     /inference="COORDINATES: protein motif:HMM:NF015882.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent malic enzyme"
                     /protein_id="HVD36271.1"
                     /translation="MSLKDEAIGLHRMLRGKIEIQSRISLENLFEEEKGTLGLIYTPG
                     VAYVSREISDNKELVYDYTSKWNNVAIVCDGTRVLGLGNVGPEAAIPVIEGKAVLFKI
                     LGGINAFPLCISTQNKDEIIRFVKEIEPVFGAINIEDIESPKVLEIVEGLQEILSIPI
                     FHDDQHGTAVIAFAALINALRIVGKKLDAIKVVIAGAGSAGYGIVNILHEAGCKDIVV
                     TDSKGALSIDRLNNSKDDDDDIKNRYKLEISQKTNPRKLTGKLEHVIEGADVFIGVSG
                     KGGILNHQMIQSMNHDAIVFALSNPDPEILPPDALQVRARIVATGRSDFPNQINNAVV
                     FPSVLRVLLDVRAKTLSEDMLVSVATAIAGIVNDTHLREDYIIPKVNDPRILPTVTMA
                     LRDAIQKHITNSGYSAA"
BASE COUNT          522 a          264 c          322 g          444 t
ORIGIN      
        1 atataataca tttttcatgt aaccactcct tgcgtgcagt ttgctgttcg tatactcgta
       61 tacattttat ttaggatcat caatactttg ctaattgaac tgtcgacttc atattattca
      121 atacttctat gggggtaaaa agatatagaa actcatagat agattgtggc cataaaggta
      181 ttgctttgag tttaaaagat gaggctatag ggttacaccg aatgttgaga ggcaagatcg
      241 aaattcaaag cagaatttcc ttagaaaatc tctttgaaga agaaaaagga actcttggtt
      301 tgatttatac tcctggagta gcatatgtct caagagaaat aagcgacaat aaagaattag
      361 tatacgacta tacatcaaaa tggaataatg ttgctatcgt ctgtgatggg actagagtgc
      421 ttggtctggg aaatgtgggg ccagaggcag caattcctgt tatagaggga aaggcggttt
      481 tattcaaaat attaggtggc atcaatgctt tcccactctg tatatctacc cagaacaagg
      541 acgagataat tcgatttgtt aaagaaattg aaccagtatt tggagccata aacatagaag
      601 acatagagtc gcctaaggta ttggaaatcg tagaaggatt gcaagaaatc ctatctatcc
      661 caatttttca tgatgatcaa cacggaactg ctgttattgc atttgcagca ctgataaatg
      721 cccttagaat agtaggcaaa aagctagatg caataaaggt ggtaatagca ggagcaggtt
      781 cagcaggata cggtatagta aatatcctac atgaggcagg atgtaaggat attgttgtga
      841 cagatagcaa aggagccttg tcaattgaca gacttaataa cagcaaggat gatgatgatg
      901 atatcaagaa ccgatacaaa ctggaaataa gccaaaaaac caacccgaga aaattgactg
      961 gaaagctaga gcacgtaatt gaaggagcgg atgtatttat cggtgtatct ggaaaaggtg
     1021 gtatattaaa tcaccaaatg attcaatcaa tgaatcacga tgcaatagta tttgcactga
     1081 gcaaccctga ccctgaaata cttcctccag atgcactgca agtaagagca agaattgtag
     1141 ccacgggtag atccgacttt ccaaatcaaa tcaataatgc tgttgtattt ccatctgttc
     1201 ttagagttct gcttgatgta agagccaaaa ccttgagcga agatatgctt gtatctgttg
     1261 caactgctat tgcagggatt gtaaatgata ctcatctaag ggaagattac atcataccca
     1321 aagtaaatga tccaagaatc cttccaacag ttaccatggc attaagagac gcgatccaaa
     1381 aacatataac gaatagtggt tattcggcag cctagaatat aatgaatatt cttatttctt
     1441 tgcgcgtttt tgtttttcca gaaactccat aagctcaacc tcccccctct tttttttaag
     1501 aggcgaaatt gtaaattagt catcttaatg ctgggtggct gatacttcat ta
//
LOCUS       DATLQL010000247         1265 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1302331, whole genome shotgun sequence.
ACCESSION   DATLQL010000247 DATLQL010000000
VERSION     DATLQL010000247.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1265)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1265)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1265
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1302331"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(266..712)
                     /locus_tag="VNB68_02600"
     CDS             complement(266..712)
                     /locus_tag="VNB68_02600"
                     /inference="COORDINATES: protein motif:HMM:NF019401.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1622 domain-containing protein"
                     /protein_id="HVD36272.1"
                     /translation="MRKCIRIYHASFKHLEISPYMSNNKMVMILDYYITLITLVIDAA
                     AGLVIGISAVLAFVSFLKHLKMKKEDITMYWGTIRARLARGLLLALDLEIGSDILKTI
                     LVPSFTELIILAVVVGIRIILSWSLSKEIEGHGDDMAKSNGLPDAR"
     gene            856..>1265
                     /locus_tag="VNB68_02605"
     CDS             856..>1265
                     /locus_tag="VNB68_02605"
                     /inference="COORDINATES: protein motif:HMM:NF015674.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF308 domain-containing protein"
                     /protein_id="HVD36273.1"
                     /translation="MEISKSGSKSSRLWAFQIAVGSFCIILSIVVMFYGASTTAGAYI
                     WLFLAGIGIMILGAERLVSGLRAKGVRRSSRLLNIGVGIGLIIYIGSGFFYPQFATKW
                     LIIFLGFGLLANGIIRIVTGLKKKEEESYDISSVA"
BASE COUNT          374 a          233 c          252 g          406 t
ORIGIN      
        1 ataatgggca tccagatgat atcttcagga gtatccggca agccgagaat gtctaaaata
       61 aaataaaatg atcaacggtt ctcttactga agggttcaga tttaagaaaa acattgaaat
      121 cataccctga aacaagacat aactcgccgc aatatgaaat catcagtttt tggaaagtct
      181 agcactacgc caaagttggt catggataca aagttattaa agcaatagat agcttttagt
      241 gcaaaatcaa tgcatttgtt tcatgttatc tcgcatctgg taacccattt gatttggcca
      301 tatcatctcc atgcccttca atttcttttg aaagtgacca gctaagaata attcgtattc
      361 caacaactac tgcaagtatt atcagctcgg tgaatgaggg tacgagaata gtcttcaata
      421 tgtcactacc tatttctaag tcgagtgcta gcagcaatcc tctggctaat cgcgctctta
      481 tcgttcccca gtacattgtt atgtcttctt tcttcatctt caagtgcttt aaaaaagaga
      541 caaatgctaa aacagcagat attcctatga caagtccggc tgctgcgtca attacgagcg
      601 taattaaggt tatgtaataa tctaagatca ttaccatctt attattgctc atatacggac
      661 ttatttctaa atgtttgaat gaagcgtggt aaattcgtat acattttcgc aatttcagga
      721 tgcctccgta gagttagggt ttttcctagg cgtgagacaa gacattcctt tccgttatgc
      781 gaaaagatct cttatgtgct cacttaattt tggataattg ctttatatct ggtcatttaa
      841 aacgtatata tcaatatgga gatatccaaa agtggctcaa aatcctcgcg gttatgggct
      901 tttcagatag cagtaggcag tttttgtata atactttcca tcgtggttat gttttatggt
      961 gcgagcacta cagcaggggc ttacatttgg ctgttcctag ctggaatagg tataatgata
     1021 cttggagcag aaaggctggt aagtggactg agggcaaagg gtgtcagaag atcatctcgc
     1081 ttgctcaata taggtgtagg tatcggtctc attatttata ttggatcagg tttcttctat
     1141 ccgcaatttg ccacaaaatg gctcatcatc tttctcgggt ttggtttact agctaatggt
     1201 atcataagaa tagtcaccgg tttgaaaaag aaggaggaag aatcatacga tatttcttcc
     1261 gttgc
//
LOCUS       DATLQL010000248         2407 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2189909, whole genome shotgun sequence.
ACCESSION   DATLQL010000248 DATLQL010000000
VERSION     DATLQL010000248.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2407)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2407)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2407
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2189909"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..512)
                     /locus_tag="VNB68_02610"
     CDS             complement(<1..512)
                     /locus_tag="VNB68_02610"
                     /inference="COORDINATES: protein motif:HMM:NF013704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006306 - DNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA methyltransferase"
                     /protein_id="HVD36274.1"
                     /translation="MAPGTQTKVYDENLLILADNLKATKYLLLNGFKEKIDLVYIDPP
                     FYSGARYYHRASKRTDLAFKDTWSNQVNLYMNMIYPRLSLIRSLLSREGSIFVHLDWH
                     ASHYVKIAMDEIFGIENFRNEIIVKRGRKKNLLYQFEKVDRMHTANDIILWYSKYPST
                     KFCKPLVPAD"
     gene            complement(721..1311)
                     /locus_tag="VNB68_02615"
     CDS             complement(721..1311)
                     /locus_tag="VNB68_02615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36275.1"
                     /translation="MIISDSYMGVFLPSDLPGRILEFMNSKVDLPIVIRTELMACFYL
                     FGKNHGVHGEIEILNVKNLARKTVTQISNEVKRFANLNSTMNQELVRQNFLKRAMQIA
                     VDVKEKISSGDIDLNRRISRDPTILTDIFTFHIAFYKEDYFFHLFDPLPGNQLPADVR
                     AVLDGRMLMLGFNTKDSSLLPFPSLLTPFIEWIRSS"
     gene            complement(1445..1981)
                     /locus_tag="VNB68_02620"
     CDS             complement(1445..1981)
                     /locus_tag="VNB68_02620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HVD36276.1"
                     /translation="MPIDPDFPKNYQVIGKIQHADGEHYHFMWGPGKLKEAAENEEVK
                     AAYATRGEEIVPLGVSGTMVAIDWDSCVADGACIEACPVQVFQWYRTEHDVPAIEVTK
                     QTWAGTGKDVKDERKDFTDKADPIREHDCIWCMACVSVCPPQAVKVDQAALEFHEKAD
                     GTFNESLSKGSAPPPHAH"
     gene            complement(2061..>2407)
                     /locus_tag="VNB68_02625"
     CDS             complement(2061..>2407)
                     /locus_tag="VNB68_02625"
                     /inference="COORDINATES: protein motif:HMM:NF037143.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36277.1"
                     /translation="CRIAELRKTELQGIQMLRDHGLEIFDDSDPFNVFFQGKVYSLTE
                     TNDSITVTMRLPFVKESDVNVIKDNDELIITARHEAGHVANTVMLPLGAIGMKLLSSN
                     LDGNELSIVLVR"
BASE COUNT          692 a          504 c          435 g          776 t
ORIGIN      
        1 aaatctgccg gaaccaaagg tttacagaac ttcgtagatg ggtactttga ataccataat
       61 ataatgtcgt tagctgtgtg catgcgatca actttttcaa attggtagag cagattcttt
      121 tttctacctc tcttaacaat aatctcgttt cgaaaatttt cgattccgaa gatttcatcc
      181 attgcaattt ttacataatg ggatgcatgc caatcgagat gtacaaaaat ggaaccctcc
      241 cgagatagaa ggctcctgat taaagacaac ctgggatata tcatattcat gtacaaatta
      301 acttggttac tccatgtatc tttaaaggcg agatctgtcc tcttacttgc cctatggtag
      361 tatctagctc ctgaataaaa tggtggatca atataaacaa ggtctatttt ttctttaaac
      421 ccatttagca acaaatattt cgttgccttt aagttatctg caagtatcag taaattttca
      481 tcgtaaacct tcgtttgtgt ccctggtgcc acaagtggtt ctaaatcaaa ttcgcgtttc
      541 ttccaagatt ggcgaattgt ggtatttcta aactgccgca attttccaat tcaccataga
      601 ttataataat tcaaacgatc aaacgatctc gcagtacttt aactcttggc ctaccaacat
      661 tgcgcaatta agccagggcg taaataatat gctgaatctt gtataacaat agtgtcattc
      721 tcagctacta cggatccatt ctatgaaagg tgtcaacagg gagggaaacg gaagtaggga
      781 tgaatccttg gtgttgaaac caagcatcaa catccttccg tcaagtacag ctctaacatc
      841 tgcaggtaat tgatttccag gcagcggatc aaataagtga aaaaagtaat cttccttgta
      901 aaatgcaatg tgaaatgtaa agatatcagt taaaatggta ggatctcgcg aaattctcct
      961 gttcaaatca atatcacctg aggaaatctt ctcttttaca tctactgcta tttgcatggc
     1021 tcgtttgaga aaattttggc gcactagctc ttggttcatt gttgaattta ggtttgcaaa
     1081 ccgcttgacc tcgttagaaa tctgagtgac tgtcttccta gcgagatttt tcacattcaa
     1141 gatctcaatt tcaccatgga caccgtggtt cttgccaaaa aggtagaagc aggccattaa
     1201 ttcagttcgg atcacaattg gcagatcgac cttactattc ataaactcca gaattctacc
     1261 aggaaggtcg ctgggcagaa acactcccat ataagaatct gatattatca tacttagcta
     1321 tcacaattat accatcgggc attgagacaa cgtatgaagg tgtacttctt ggacaatgaa
     1381 ttaattctat atcaatgtta gataaattgt ttaaagagat cagtgataaa aaaggtaagg
     1441 aagcttagtg agcatgaggt ggtggtgcgc taccttttga taaagattca ttaaacgtac
     1501 cgtctgcctt ctcatggaat tctaatgctg cctgatctac ttttactgcc tggggcggac
     1561 ataccgacac acaagccatg caccaaatgc aatcatgttc tcgaattgga tctgccttat
     1621 cggtgaaatc ttttctctca tcttttacat ctttgcctgt ccctgcccac gtttgttttg
     1681 ttacttctat tgcaggtaca tcgtgttccg tcctatacca ttgaaagact tgtactgggc
     1741 atgcttcaat gcacgctcca tctgcgacac aggaatccca gtcaattgca accatagtcc
     1801 cgctaacacc gagtgggaca atttcttctc ctctagtagc atatgcagct ttaacctctt
     1861 cgttttctgc agcctctttt aatttgccgg ggccccacat gaaatgataa tgttccccgt
     1921 cagcgtgctg tatcttaccg ataacttggt agttttttgg aaagtctgga tctataggca
     1981 ttctattcga tttattctcc agcgaaatat tatataaacc atatgtgtag agagcctgat
     2041 ttatcccctt tggctgactt tcatcttacg aggactatgg ataattcatt tccatctaaa
     2101 ttgcttgaaa gcaatttcat tccaatagct ccaagtggta acatgactgt atttgccacg
     2161 tgtcctgcct catgccttgc agtaattatt agttcatcat tatctttaat tacatttaca
     2221 tcagattctt taacaaatgg tagtctcatt gtgacggtaa ttgaatcatt ggtctcagtt
     2281 agagagtata cctttccctg aaaaaaaacg ttaaaagggt cagaatcgtc aaaaatttca
     2341 aggccatgat ctcttaacat ttgaattccc tgaagttctg ttttccttaa ttcagctatt
     2401 ctgcacg
//
LOCUS       DATLQL010000249         1731 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1302610, whole genome shotgun sequence.
ACCESSION   DATLQL010000249 DATLQL010000000
VERSION     DATLQL010000249.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1731)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1731)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1731
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1302610"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..521)
                     /gene="hemC"
                     /locus_tag="VNB68_02630"
     CDS             complement(<1..521)
                     /gene="hemC"
                     /locus_tag="VNB68_02630"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004418 - hydroxymethylbilane synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HVD36278.1"
                     /translation="MPYARLKNIMVKLRVGTRGSKLAVAQTQIVLDMLIKKNPHIDFE
                     VAAISTKGDVDKRPLITMDQKGICEIDVNEALIKGEVDFTVHSLKDIPSDLSNELIIA
                     CIPRRARPNDVLVNKKKLKLSELRAGSVIGTSSLRRAIQIMRKRPDLNIKPIRGNVET
                     RVNKSITGEYDAI"
     gene            complement(487..>1731)
                     /locus_tag="VNB68_02635"
     CDS             complement(487..>1731)
                     /locus_tag="VNB68_02635"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HVD36279.1"
                     /translation="KVIPSGVNSPIRFYEPYPFFAVSGKGSKIVTVDHKTYIDYCMGY
                     GALLLGHAFPSVIETVRRQLDDGNLFCVPTEQEIKLAELFSQIIPCAEMTRLVNTGLE
                     ATMHAIRLARAFTKKKKIIKFEGCYHGSHDYVLVKRGLGTEGIPISEGIIEEVASQTL
                     VVTYNNYLELEQLVRKTDDVACIIIEPVASNMGLVVPEKEYLNEIRKITQQMDIVLIF
                     DEVVTGFRLALGGASEFFGIKPDLATFAKAMGNGFPIGAITGKKEIMQQFAPCGRVYQ
                     ASTYAGNPFSVSASIATIKILTEAKNEIYPKIARTCDSIVNGIKDELEKSKLNYVINT
                     IGSMYQLFFTSEKVKDSKSAMRSNAMAFRKLYDKLLECGVFIPPSQLETCFISYAHTE
                     DDIDKTVESYSYALRKVKEYYG"
BASE COUNT          484 a          375 c          286 g          586 t
ORIGIN      
        1 ataatggcat catattctcc tgtaattgat ttattgactc ttgtctctac atttccacga
       61 attggcttga tattcaagtc aggacgtttc ctcattattt gaatagctcg cctgaggcta
      121 ctggtcccta ttacagagcc tgcacgcagc tcactcaatt ttaatttttt cttattgacc
      181 aaaacatcat ttggacgagc cctccttgga atgcatgcaa tgattaattc atttgaaaga
      241 tccgaaggga tatctttcaa gctatggaca gtaaaatcaa cttcaccttt aattagagct
      301 tcattaacat ctatctcaca gatacctttc tgatccattg taatcaaagg ccttttatct
      361 acatcaccct ttgtacttat cgcagcaact tcaaaatcga tatgaggatt tttttttatc
      421 aacatgtcta acacaatttg ggtctgagca acggcaagtt tactacctct tgtacccacc
      481 cttaacttaa ccataatatt ctttaacctt gcgtaaggca taactatatg actctactgt
      541 cttgtcaata tcatcttcag tatgggcgta agaaataaag caagtctcta gttgtgacgg
      601 aggaatgaaa actccacatt ctaataattt gtcataaagc tttctgaatg ccattgcatt
      661 agacctcatt gcactcttag aatcctttac tttttctgaa gtaaaaaata gctggtacat
      721 tgaacctatc gtatttataa catagtttag ttttgatttt tccaactcat cctttatgcc
      781 gttaactata ctatcacacg ttcttgcaat cttcgggtag atctcatttt ttgcttcagt
      841 gagtatctta attgttgcaa tagatgctga aacagagaat ggatttccag cataagtact
      901 tgcttgatat actctaccgc aaggtgcaaa ttgctgcatt atttctttct tccctgttat
      961 tgctcctatt ggaaatccat ttcccatagc ttttgcgaac gtggccaaat caggtttaat
     1021 accaaagaat tcactcgcac ctccaagagc gagtcgaaat ccagtaacaa cttcatcaaa
     1081 tattagtaca atatccatct gctgcgtgat ctttctgatc tcgttcagat attccttctc
     1141 aggtactact agtcccatgt ttgatgcaac gggttctatt ataatacaag ccacatcatc
     1201 tgtttttcta actaactgtt ctaattctag gtagttatta taagtgacaa ccagcgtttg
     1261 agacgcaact tcttcaatta tgccttcaga tattggtatt ccttctgtac ctaggcctcg
     1321 tttgacaagc acgtaatcgt gagaaccgtg gtaacaccct tcaaatttta tgattttttt
     1381 tttctttgta aacgcgcgag ctaatctaat tgcgtgcatt gttgcctcta ggcctgtatt
     1441 cactagccta gtcatttctg cacatggaat gatctgggag aacaattctg ccagttttat
     1501 ttcttgttcg gttgggacac aaaacagatt tccatcgtca agttgacgtc ttacagtctc
     1561 aattacagaa gggaaggcat gacctagcag aagggctccg tatcccatac agtaatcgat
     1621 atatgtttta tgatcgacag tcacaatctt gctacctttg cctgaaactg caaagaacgg
     1681 atagggctca taaaagcgaa tcgggctatt aacacctgag ggaattactt t
//
LOCUS       DATLQL010000250         1322 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_771898, whole genome shotgun sequence.
ACCESSION   DATLQL010000250 DATLQL010000000
VERSION     DATLQL010000250.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1322)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1322)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1322
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_771898"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
BASE COUNT          379 a          253 c          281 g          409 t
ORIGIN      
        1 ttataaagga gatagcctat tttaatgtta gatgctcata gttgtagagg aatatggtga
       61 aagtatttga aaatattgtt gaaagaattc gagataactc agattcaata gatattccca
      121 cggaactcgg cacctttatc atagtctttt tcgtcttgag cgtccaacgt gtttacatat
      181 cttcacatct ctcgccatcg cgaccggcag ctcaataatt tattttcaag aaattatatt
      241 actgtaacta gctgcagtca ttttagtttt tatgactaat taaattattt gggtttgacc
      301 ttattcaaag tgggacgtgg aaggaagttg tacccgagcc aatgccaact gggtgtcaat
      361 ttgtggataa gcagtcttag gttgctagcc tagttgtgta gagcgtaaaa ccacactctt
      421 cacaaacata agatagacta tcgaaatctg aactgagaat cattaagtca aaacagtgtg
      481 gacattctat ttcagtcttg atggagtggc ggtccatgcg gtctattgcc tcacgctcaa
      541 atactggaga ctccaagctt gcatttcgct tgctcgtcat actcctatga tgtgccacat
      601 ttttaataat ggtttaatgt cgccaacgtt gtactattta taaaatttac gacactgaga
      661 aaagttgtgc tttttgcaac gggtgctagc ttcaaaccat aatcagtcgt ctaggttctg
      721 ttaaacaatg tccttatcat gatcatgatc aagtccatgt ttctaacctc atcgtaactg
      781 tcagtttctt attgttgttt gagcaccatc aagtttgatc gtatagcgta agtatctagt
      841 ttatcaattc aatctacatg ccggccgaaa gattgtatgt tggcttatga aggtgactta
      901 tattcttcgc tgcaccttca ctcgctaact ggctttggag cagctaaatt tcgttcgtgc
      961 gtggaagaac gaattcgtac tgaactgcta atctgaatag aatgaacgaa gctgtaaaga
     1021 cagggatgac atttgcaaaa ggatttaaac gaagagggca tctattaaac tccaagtgcg
     1081 gaagtgctcg attatttgtg ccactccatg aacaggatca ctctggccag tgtccgtggt
     1141 tggtgaataa taagcacctc cgcgcttgaa taatcagttc ggtaccgaag aagtaggagg
     1201 atgttggctc gcggccaagt agaagggtat tttacttggt actcgattcc cctgaatata
     1261 gcttcaacac ggaggcccgg acaaacaatt tgaatctcaa agggggaaaa aattttcagt
     1321 gc
//
LOCUS       DATLQL010000251         1576 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_771931, whole genome shotgun sequence.
ACCESSION   DATLQL010000251 DATLQL010000000
VERSION     DATLQL010000251.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1576)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1576)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1576
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_771931"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..470)
                     /locus_tag="VNB68_02640"
     CDS             complement(<1..470)
                     /locus_tag="VNB68_02640"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HVD36280.1"
                     /translation="MSSDQPNTKSGAEHEKPTSDSAQTSLPKKTEPVIPEFEGALVNQ
                     LVTKFGDKQVQVIYARPGRTKILVPSNEIIEVASFIRDTLGFDHAESVSGTDYPKDNQ
                     IEVIYHLSSYSDEKLSSQVLALSTRVNRDDARLPTLINIFKSAEYHERETFEMLG"
     gene            complement(472..987)
                     /gene="nuoB"
                     /locus_tag="VNB68_02645"
     CDS             complement(472..987)
                     /gene="nuoB"
                     /locus_tag="VNB68_02645"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoB"
                     /protein_id="HVD36281.1"
                     /translation="MIKDLVNPTNFNLLVGKLGDVLIRALDLPLGYAINWGRIWSLWP
                     VHLETACCSVEFGAASGPRYDVERFGIIEAFGSLRQCDLIVVQGTVTRKMAPRLRMVY
                     DQMPDPKYVIAMGACAITGGLYIDSYNVLPGVDGIVPVDVYVPGCPPRPETLIQGCML
                     LQEKIKRSKIR"
     gene            complement(1055..1429)
                     /locus_tag="VNB68_02650"
     CDS             complement(1055..1429)
                     /locus_tag="VNB68_02650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit A"
                     /protein_id="HVD36282.1"
                     /translation="MAGETVTQFAPIMYMLGFGLLASVPVLFLSKLLSPRRRYNPVKF
                     LPMECGQMPSGEGRAHFMMQYYSYILMFVVFDVISIFLYAWGASLFSISRSATLPIIG
                     FLAVMFSAMAYALYLSGRKGIW"
BASE COUNT          493 a          340 c          281 g          462 t
ORIGIN      
        1 cctagcattt caaatgtttc tctctcatgg tactctgcac ttttaaaaat attaattaat
       61 gtgggtagcc tagcgtcatc tctatttacc cttgtggaaa gtgccaaaac ctgcgatgaa
      121 agtttttcgt ctgaataaga gctcagatga tatattactt caatctgatt atcttttgga
      181 tagtctgtac ctgaaactga ttctgcgtga tcaaatccta aagtatctct aataaatgaa
      241 gcaacctcta tgatctcatt tgaaggaaca agaatttttg ttctcccagg acgtgcataa
      301 attacctgca cttgtttatc gccgaatttt gtaaccaact gattgacaag agcgccttca
      361 aactcaggaa ttacaggctc agtttttttt ggtagggaag tttgagctga atcacttgtg
      421 ggcttttcat gttcagcacc gcttttcgtg tttggttgat ccgagctcat actatctaat
      481 cttcgacctt tttatttttt cttgcagcaa catacaacct tgaattaggg tttcaggtct
      541 tggtggacag ccaggtacat atacatcaac aggaacaatg ccgtcaacac ctggaagcac
      601 gttataagaa tcaatgtaca gtcctcctgt aattgcacag gcacccatgg caatgacata
      661 ttttggatct ggcatctgat cataaaccat tcttaatctg ggagccattt ttcttgtaac
      721 agtaccctga acaacaatta gatcacactg tcttaatgaa ccaaaagcct caattattcc
      781 aaatctttca acatcatatc tgggaccaga agctgctcca aattctacac tgcagcaagc
      841 agtctccaaa tgtactggcc aaagtgacca gattcttccc cagtttattg catatcctaa
      901 aggaagatcc aacgctctta taagaacgtc tccgagtttt ccaaccaaga gattaaaatt
      961 agttggattt accaggtctt ttatcattgg tctatctcag cctccaatag ttcaaatcca
     1021 tcatatttaa tgcttagagt gattgattca aaaactacca aatgcccttc ctcccggaaa
     1081 gataaagcgc ataggccatg gccgaaaaca tcactgctag aaaaccgatt attggaagcg
     1141 ttgctgaacg tgaaatagaa aaaagcgatg caccccatgc atacaagaaa atagagatga
     1201 catcaaagac cacaaacatc aagatgtacg agtaatattg catcataaaa tgagctctcc
     1261 cttcacctga aggcatctga ccgcattcca ttggcaaaaa ctttacagga ttataccgac
     1321 gcctcggcga gagcaacttt gataaaaaca agactggaac agaggctagt agtccaaagc
     1381 caagcatgta cataataggc gcaaactggg taacggtttc tccagccaag gataaacttg
     1441 ctgttttcta aatcatataa aaatcttgct taactactat ttgtccaaaa ttataccaaa
     1501 cagttgcttt gcagcagcat ggggatgggt aagggctaat ttcattaatc taatagtttt
     1561 aaattgagct ttatag
//
LOCUS       DATLQL010000252         1045 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1834451, whole genome shotgun sequence.
ACCESSION   DATLQL010000252 DATLQL010000000
VERSION     DATLQL010000252.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1045)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1045)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1045
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1834451"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..946
                     /locus_tag="VNB68_02655"
     CDS             <1..946
                     /locus_tag="VNB68_02655"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HVD36283.1"
                     /translation="TIVLKPASATTQCGIEIERTFRKAGVPEGVFKTLVGDSSIAESL
                     IDSDVNAVTFTGSVPVGAKVAQRATSQLKKTVLELGGSDPFIVCEDADIEKASNGAVK
                     GRFINCGQSCIASKRFIVVKNIANEFIDKFVQKTERLKVGNPLSDDTDIGPLVNASGV
                     KNIDSQVKDSVKEGAEVLTGGERTGSKGYFYKPTVLKNVTPNMRIAEEEVFGPVAPII
                     VAGDEVEAIKLANDSQYGLGASIWTEDLDKAEKLSSIVESGIVSVNNIVASDPRVPFG
                     GVKKSGFGRELSRYGMLEFVNIKSVRFYDELVHAHHVE"
BASE COUNT          340 a          150 c          256 g          299 t
ORIGIN      
        1 cacaatagta ttgaaaccag ctagtgctac gacgcagtgt ggaattgaaa ttgaaaggac
       61 ctttcgtaaa gctggggtac cagagggagt ttttaaaact ttggtaggag attccagtat
      121 tgctgagtca ctgattgatt cagatgttaa tgctgtaacg ttcactggga gcgttcctgt
      181 aggtgcaaaa gttgcacaaa gagccacttc tcaattaaag aaaacagtgc tcgagttggg
      241 aggtagcgat cctttcatag tatgtgagga cgctgatatt gaaaaagcat ctaacggtgc
      301 agtaaagggt cgctttatta attgtggtca gagctgcata gcatcaaagc gatttattgt
      361 agtaaaaaat attgcaaatg agtttattga taaatttgtt caaaaaacag agaggcttaa
      421 ggttggcaac cctttatcag atgatacaga cattggaccg cttgtaaacg ctagtggagt
      481 aaagaatata gactctcagg ttaaagattc agtcaaagaa ggtgctgaag tgcttacagg
      541 aggagaacgg acgggaagca agggttattt ctacaagcca accgttctca aaaatgttac
      601 tccaaatatg cgtatagcag aagaggaagt atttggtcca gttgctccga ttattgtagc
      661 tggtgatgaa gttgaagcta taaaacttgc aaatgattct caatacggtc ttggggcaag
      721 tatatggact gaagatctcg ataaagcaga gaaattgtca agtattgtag aatccggtat
      781 agtatctgtc aataatatag tagcttctga tcctagagtc ccgtttggag gagtgaagaa
      841 aagtggcttt ggtagagagt tgtcaagata tggtatgtta gagtttgtta acattaaatc
      901 agttagattc tatgacgagt tggtacatgc tcatcacgta gaatgatgca agtgaggaga
      961 tgacgattat tatatatgtc tcaaaattat ttagaaggga aatccaatcg atattctaaa
     1021 catataataa ttctaggtag cggtt
//
LOCUS       DATLQL010000253         1166 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1120230, whole genome shotgun sequence.
ACCESSION   DATLQL010000253 DATLQL010000000
VERSION     DATLQL010000253.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1166)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1166)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1166
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1120230"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..331
                     /locus_tag="VNB68_02660"
     CDS             <1..331
                     /locus_tag="VNB68_02660"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HVD36284.1"
                     /translation="NPGETPTHAAGRELLEETGYAARVLNEISFHYTWPGRCTQKNHV
                     FRAQGLYKHSSQTLDTETIKILKLSKRKVFHEIEKGMIKSAATISAIFLAYIGDMDKN
                     NQSNKHD"
BASE COUNT          380 a          219 c          228 g          339 t
ORIGIN      
        1 taaccctggt gaaacaccca cgcacgccgc cgggagagag ctcttggaag aaacaggata
       61 cgccgctcgt gtgcttaatg agatatcatt tcattacacc tggcctggcc gatgcacgca
      121 aaaaaaccat gtctttcgtg cccaaggctt gtacaagcat tccagccaga cactcgatac
      181 agagacaata aagattctaa aattatcgaa gcgaaaagta tttcatgaga ttgaaaaagg
      241 tatgataaag agcgcagcta cgatatctgc gatatttttg gcgtatattg gtgacatgga
      301 taagaacaat cagagtaaca agcatgactg agcattggta caatcttccc tagattattt
      361 atcccttatc cttaagctgt ttaatttaac ttctcccgct cagcaggaca gacaagtgta
      421 tttgcgtctg gctaactgac atttcataac aatttcgatt tgcgtctcga tttccttgga
      481 tctgtatatt atttgaaacg aatcgaaaac tttgaatcaa ttcctaccaa aaaatcatca
      541 atttaagtac agaagctttc aaattacatg taattattgt catgtaagtg ttttgggttg
      601 tcatggcatg aagtcgcaat accattatat taggtgtgga atgaactaga gataagaatg
      661 aacagatcgc ggcctacaca tacaggagca caactacgcg aaccccgtct cggtttcacg
      721 acaaaattta agttactgga aagaataaag cacaaactaa gtttcctaca tccaggtgtt
      781 caaagaacct gctcttgttg cttgtacttt tatagcatcc ggagaaatga gtttctatct
      841 ttctgatccg ttttcaatat tcaacagtta catttcccgt tacgatagtt gacttcattt
      901 gtattataag aaatttcgga agtttgtgta taatcattta ttatcctacc gttactactt
      961 tgctaatggt ttaaaggtga acgactaacc aatggactgg aatataataa tatcaaacag
     1021 aacgcctgta aaggcaaacg atggaagatc atgtggatat gtcgttggag aatataaaga
     1081 caacctacta atattggatg gaagagtgat atctcatgaa tatatgcttc caaaagacaa
     1141 ggttgatagg tatgatggaa gcgaat
//
LOCUS       DATLQL010000254         2798 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_418797, whole genome shotgun sequence.
ACCESSION   DATLQL010000254 DATLQL010000000
VERSION     DATLQL010000254.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2798)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2798)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2798
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_418797"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            214..1863
                     /locus_tag="VNB68_02665"
     CDS             214..1863
                     /locus_tag="VNB68_02665"
                     /inference="COORDINATES: protein motif:HMM:NF024977.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HVD36285.1"
                     /translation="MGTALKVHPSFFKEFATKTWVSPAEVVKELVENAFDEDATKVLI
                     TILNGDSVCIEDDAGMNQEGVQKFLLLGSPHKRIDTISPKFKRVRTGRYGTGRLSFLT
                     SFEKMKIRTRQGTFDKSLLIDSNSLDKLFTGNSELRELRESPLKRNGTELTISGSKVQ
                     IDEPRLIKEIRKLAVLRHPLFEVSIKRADRFREWDFSSAESIKAPDIQGHRIPVTLDN
                     GKITGEIAIARRPLSDDERGIAIMIGNHIVLRTSFGFDSKLSRVTGYVRCDNLTSRFA
                     DKSAIIEDEEYERFNKQMKILVLDTVIPSLAEYEDVLITREESKIYRQLDKVLGQAVI
                     ETLESQEEIEGYEIVETRNANLSSGDSSSIPAEVPSIKESIDLENEYSDIERHGTSAV
                     GSDEFGLEKSHQKYEISTVPAEVQAASGIIPSGQTSTFAEQTTEHPTDHIATTKIRKP
                     ILKKTFVLKKVGYKVIPYEDESDSRYSFVNENVVFVNKANPTYKAESSRGDEFLLRHI
                     MNIVAQAIAEARHPEGKEALELQNRLISEAIRIHDGLSRSG"
     gene            2019..2615
                     /gene="psmB"
                     /locus_tag="VNB68_02670"
     CDS             2019..2615
                     /gene="psmB"
                     /locus_tag="VNB68_02670"
                     /EC_number="3.4.25.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000502 - proteasome complex [Evidence
                     IEA];
                     GO_function: GO:0004175 - endopeptidase activity [Evidence
                     IEA];
                     GO_process: GO:0010498 - proteasomal protein catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="archaeal proteasome endopeptidase complex
                     subunit beta"
                     /protein_id="HVD36286.1"
                     /translation="MAFQFMPGATAIGITCGDGIVLAAEKRVSYGNFVVNKNTKKVFA
                     ITHNVAAACAGMVADMQVLVRQVTALSRIRKLEIRRDVATNSIAKLMSVIMFERRYFP
                     LLTQVVVGGTDPSPQIYTLDPLGSLLPDDYAAVGTGAEMALGVLDSEYKKDISIEVAR
                     NLAVKAIKSSIQRDSASGDGIDLVIITDKGIQEDTIKL"
BASE COUNT          952 a          500 c          587 g          759 t
ORIGIN      
        1 tataataaaa aaaatatgta aaagtttttc atccgttgtc gatacaggaa aatcatggac
       61 tattaacaat ttcgccaatt acgagcatgg acctaaaaca aatcaacgca aaacaagatg
      121 gatgccgtaa gcaaatgggc atatgtttat acacatcaac tgcatttttg ccagtaataa
      181 ataaaggtga gaacataatg ttccatctta tagatgggta cagcattaaa ggttcatcct
      241 tcctttttta aggagtttgc taccaagaca tgggtttctc ccgcggaagt agtaaaagaa
      301 ttagtggaaa atgcatttga tgaagatgca acaaaagtct tgatcacgat tttgaacgga
      361 gattctgttt gcatcgaaga cgatgcagga atgaaccaag aaggagttca aaagtttctg
      421 cttcttgggt caccacacaa gagaatagat actatttcac ctaaattcaa aagagtaagg
      481 actggaagat atggcactgg tcgtctatcg tttctgacat ctttcgaaaa aatgaagata
      541 agaacacgtc aaggtacttt tgacaaaagt ttgttaattg attctaattc acttgataag
      601 ctctttacgg ggaattcaga actaagggaa cttcgtgagt caccactaaa gaggaatgga
      661 acggagctca ctataagcgg ttccaaagta cagattgatg aacctagatt gataaaagaa
      721 atccggaaac ttgctgtctt aagacatcca ttattcgagg taagtatcaa gagagcagac
      781 cgcttccgtg aatgggactt ttcgtcagca gaatcgatca aggcacccga tatacaagga
      841 catagaattc cggtcaccct cgacaatggc aaaatcactg gcgaaattgc tattgctcgc
      901 agaccactat cagatgacga aaggggaata gccatcatga taggaaacca tattgtattg
      961 agaacctctt ttggatttga ctcaaaattg agcagagtga ctggttatgt aagatgtgat
     1021 aatcttactt ctagatttgc tgacaaatca gccataatag aggatgaaga gtacgaaagg
     1081 tttaacaagc aaatgaaaat tcttgtccta gataccgtga tacctagtct tgctgaatat
     1141 gaagatgttc ttattacccg ggaggaatcc aagatatata gacagcttga caaggtcctg
     1201 ggtcaggcgg tcattgaaac actagaatcc caagaggaaa tagaaggtta tgaaatagta
     1261 gaaacacgca atgccaactt aagttccggt gattcgtcct ccattcccgc agaagttcca
     1321 tcaatcaagg aatcaattga tttagaaaac gaatattctg atatagaacg tcatggaaca
     1381 tcagcagtag gaagcgatga atttgggttg gaaaaatccc accagaaata tgaaattagc
     1441 actgtgcctg cagaagtaca agccgctagt ggaattattc caagcggaca aacgagtaca
     1501 tttgcagagc agacaacaga acatccaaca gatcatattg cgacaaccaa aattaggaaa
     1561 cctattctta agaagacgtt tgtacttaaa aaagtaggat acaaagtaat tccttacgag
     1621 gatgaatctg attcaagata tagttttgta aacgagaatg ttgtttttgt aaataaagca
     1681 aatccgacat acaaagcaga atcttctagg ggtgatgagt ttcttctcag acatataatg
     1741 aatatagtag cacaggcgat agcggaagca agacatcctg aaggaaagga agctctggag
     1801 cttcaaaaca gactcatttc agaagctatt agaattcacg atggcttgtc tagaagtggc
     1861 tagcgtaaaa ttcacactat tggtctggat tacaccaata atacaattat aggattgaaa
     1921 ccggagcggc gattttttct gtcaaacttt aatgtcttat ttattgaaat gatagaaagg
     1981 actaaatctg actatcttta cttctaacct gaataagtat ggcttttcaa tttatgcctg
     2041 gagcgacagc aattggtata acgtgtggcg atgggattgt tctcgcagca gaaaaacgtg
     2101 tttcttacgg gaattttgta gtgaataaaa atacaaaaaa ggtgtttgcc attacacaca
     2161 atgttgctgc agcatgcgct ggcatggtag ctgatatgca ggtattggtg agacaagtga
     2221 cggcattgtc aagaattagg aagcttgaaa ttcgacgtga tgttgcgaca aactctattg
     2281 ctaagctaat gtcagtaatt atgttcgaaa gaagatattt ccccctcttg actcaggtag
     2341 tagttggagg caccgatcca tcgccccaga tttatacact ggatccgttg ggttctcttc
     2401 ttcctgatga ttacgctgcg gttggaacag gggcagaaat ggctcttgga gtgttagact
     2461 ctgaatataa aaaagatatt tcaatagagg tcgcaaggaa cctagccgtt aaggcaataa
     2521 aatcatcaat tcaacgcgat tccgcaagtg gcgatggtat cgacttagta atcataacgg
     2581 ataaaggcat tcaggaagat accataaaat tataaatctt ataattcaaa tcacaacccg
     2641 acggccaaga gatttagtag catcattata gcgtaggcta caaccttgtt tctttcttta
     2701 gattccagaa gatatctcct acataatgaa gattgttaat cacaggtcct ttttccaaat
     2761 tcatcatcgt tccagcatca actcttgaat aacctatt
//
LOCUS       DATLQL010000255         1095 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2372147, whole genome shotgun sequence.
ACCESSION   DATLQL010000255 DATLQL010000000
VERSION     DATLQL010000255.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1095)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1095)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1095
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2372147"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..627)
                     /locus_tag="VNB68_02675"
     CDS             complement(<1..627)
                     /locus_tag="VNB68_02675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36287.1"
                     /translation="MAMVVMTTVLTMITMFAPLLVNQTSSSAFAITANRDAPVNVQAG
                     GGNGTAPLTQFLPERTEIKAGQSITWYNPTTVGEPHTVTFVLDNNTMTGVVSPLAVPN
                     STQFTPLPPGSNNQPAMVPGKNIVIALNARVYSPTVIDSQGNVKMFAPPDANYTMTGT
                     EKYVNSGWFLPKGQEKQYPGSGNTFTVTFEKPGTYKYICLLHPWMTGSV"
     gene            759..>1095
                     /locus_tag="VNB68_02680"
     CDS             759..>1095
                     /locus_tag="VNB68_02680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36288.1"
                     /translation="MATAFNYWSCAYLSRLMANVLIEAEGKGIDSNAYKNFINTVDSE
                     ATKRSYRFTFSKFMKFCGLEDYDKMLQIEPKKLEGLIADYITHMKVDQRLSFNTVSLY
                     VASVAHFYSM"
BASE COUNT          317 a          201 c          224 g          353 t
ORIGIN      
        1 aacacttcca gtcatccaag gatggagaag gcatatgtac ttgtatgttc ccggcttttc
       61 aaaagtaaca gtaaacgtgt ttccagaacc agggtattgc ttttcttgtc cttttggaag
      121 gaaccaacct gaattaacgt atttttcggt accggtcatt gtataatttg catctggcgg
      181 tgcaaacatt ttcacattac cctgtgagtc aattaccgtt ggactataca ctcttgcatt
      241 aagagctatt actatatttt taccaggtac catagctggt tgattgttgg agcccggggg
      301 aaggggtgtg aattgagttg aatttggaac ggcaagcggt gatactactc ctgtcatggt
      361 attgttgtct aatacaaatg taacagtgtg tggttctcct acagttgtcg gattgtacca
      421 agttatactt tggccagcct taatttctgt acgttctggt aggaactgag ttagtggagc
      481 agtcccattt cctcctccag cttgtacatt gactggtgca tctctgttgg cagtaatagc
      541 aaatgctgat gatgaagtct ggttaacaag cagcggcgca aacattgtaa tcattgtgag
      601 cactgttgtc atcactacca ttgccatgaa tgttaatctc ttgtaatgag tgtgcatttt
      661 attatccact ttgataagaa aaaacatcta ttttaaaagt atttctcatc gattgacaga
      721 tgtccttcca ttactataac taatgtataa ttaatggagt ggctactgca tttaattatt
      781 ggtcttgtgc ttacttatct cgtctaatgg ctaatgtcct catagaagca gaaggaaaag
      841 gaatagacag caacgcttac aagaacttta taaatactgt tgatagtgaa gcaaccaaac
      901 gaagttatcg atttaccttt tcaaaattta tgaaattctg tggactagag gattacgata
      961 agatgctgca gattgaacca aagaaacttg agggtctaat agcagactac ataactcata
     1021 tgaaagtaga tcaaagatta tcatttaaca ccgtgagtct ttacgttgcc tcagtagcac
     1081 atttctactc catga
//
LOCUS       DATLQL010000256         1070 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2372216, whole genome shotgun sequence.
ACCESSION   DATLQL010000256 DATLQL010000000
VERSION     DATLQL010000256.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1070)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1070)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1070
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2372216"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..700
                     /locus_tag="VNB68_02685"
     CDS             <1..700
                     /locus_tag="VNB68_02685"
                     /inference="COORDINATES: protein motif:HMM:NF040371.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF6293 family protein"
                     /protein_id="HVD36289.1"
                     /translation="TLNSTETMLRIHIAPVGFEQDRIVLPAENMKADRIWLIVHDDPK
                     DDKGSSFPVSIATELKKSLIEYRFEKADRTDLFDTLRALRTIVLTEIKNAIYVNVSVG
                     SKIQAIASMMICMMFKDIAMIKPYYAVPEKYTTVPKKQETEGLKEIVTLPEYKIETPS
                     DNLIESLAIINQKGKGGKISKKELKDRALEQELIHVEEKSEHAEQAGYMSLNKNIIEP
                     LLLKWKFISIEKLG"
     gene            complement(833..>1070)
                     /locus_tag="VNB68_02690"
     CDS             complement(833..>1070)
                     /locus_tag="VNB68_02690"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HVD36290.1"
                     /translation="RIIDSGTGIDPEIKPRLFSKFSTTSHSGTGLGLYISKNIIEAHN
                     GNIWADNHADRKGATFSFSLPLNDNGYRSTYNKM"
BASE COUNT          370 a          181 c          219 g          300 t
ORIGIN      
        1 tacacttaac tctactgaga caatgctaag aattcatatt gctcctgtag gattcgagca
       61 ggatcgcata gtccttccag cggaaaatat gaaagcagac agaatatggc ttatagttca
      121 cgatgatcct aaagatgaca aaggtagttc atttccggtg tcaatagcaa ccgaactcaa
      181 gaagagcctc atcgaataca gatttgagaa ggctgaccga acagatttat tcgatactct
      241 aagggcctta agaactatag ttcttactga aataaaaaat gctatttatg tgaacgtctc
      301 agtaggaagc aaaattcaag ctattgcttc gatgatgata tgtatgatgt tcaaagatat
      361 agcaatgata aaaccctatt atgcagtacc tgaaaagtac acaactgttc caaagaagca
      421 ggagactgag ggtttgaagg aaattgttac actaccagaa tacaaaatag aaacacctag
      481 cgataatctg attgaatctc tagctattat aaatcagaag ggaaaaggtg gaaagatctc
      541 gaaaaaagaa ttaaaagatc gagctttaga acaggagctt atccacgttg aggagaagtc
      601 tgaacatgct gagcaagcag ggtatatgtc attgaataag aatataattg aaccattatt
      661 attgaagtgg aagttcatct cgattgaaaa gctcggttaa cgtcatatga tatccctgac
      721 aaaggatggt caaaatgcgt taaagtttct acacggtagc aataattgat ggatagatca
      781 ttacccatga gagctaggca cgagagaaag cgaactatct gcagataatc tgtcacattt
      841 tattataagt gctgcgatag ccgttatcat taagaggtaa actaaatgaa aatgttgctc
      901 cctttctgtc agcgtgattg tcagcccata tattgccatt gtgagcttcg attatgtttt
      961 ttgaaatata caatcctaat cctgtgccgc tgtgagaggt tgtagaaaac tttgaaaata
     1021 gcctaggttt aatttctgga tcaatgccag ttccgctatc tattattctt
//
LOCUS       DATLQL010000257         1287 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1304774, whole genome shotgun sequence.
ACCESSION   DATLQL010000257 DATLQL010000000
VERSION     DATLQL010000257.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1287)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1287)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1287
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1304774"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            392..>1287
                     /locus_tag="VNB68_02695"
     CDS             392..>1287
                     /locus_tag="VNB68_02695"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0070967 - coenzyme F420 binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03560 family F420-dependent LLM class
                     oxidoreductase"
                     /protein_id="HVD36291.1"
                     /translation="MKFGLQKPNFNFDYRDNDTSQIIDSLKKLATTAENNGFDSFWVM
                     DHFHQIPMIGKVEEPMLESWTTLSVVAGFTTKIKLGTLVTGITYRYPAVLAKVAATLD
                     VLSKGRLFMGIGAAWNEDESHAYGIHFPPASERLSRLEEAIQIIRKMWTEEPSASFNG
                     KYYQIRNAYCNPKPIQKPSPPILVGGGGERKTLKIVAKYADACNLFGSVETVKRKLNI
                     LKEHCKSVGRDYDSILRTKLGIIVVDDDRQMAEEKIKQIFKGMPEEQIREFAIYGTPE
                     DVLREIELFEQVDIQYLIVDLDP"
BASE COUNT          434 a          210 c          267 g          376 t
ORIGIN      
        1 ttaatgaata ttttttcgga attagagaag gtcagggaga aattgaaggc ctgccggttt
       61 ccgaatctta gtcaaaagtt tctaaatcta caggcgtcgg gatgcggatt gttaacaatt
      121 cgaatccaaa gctttaagct tttctttttt taggaatgaa accagaacta cttgttaata
      181 gagttcgtta ttgtgaattc actagcttgt gagcaatttt tgatatttgc gatttgaact
      241 ctgttagtaa gcagaggcat caattaacga gttgagacaa cataaagaac cctattgtgc
      301 tttaacttct gaatacttac ttattcagcg atagcacatc tgtgaatgtt ctcatactaa
      361 gtttataatc atctttactc tatgagataa tatgaaattt ggcttgcaaa aacccaactt
      421 taatttcgat tacagagaca atgatacttc ccaaattata gattccctaa agaaattagc
      481 cacgacggca gaaaacaatg gttttgattc tttttgggta atggatcatt tccatcagat
      541 tccaatgata ggaaaagtgg aagaacctat gcttgaaagc tggacaactt tatccgtggt
      601 agcaggattt actaccaaga tcaaacttgg aactctagtc acaggcatca cgtacaggta
      661 tcctgctgtt ctagccaagg tagctgccac cttggatgtg ttaagcaagg gaagattatt
      721 catgggaata ggtgctgctt ggaatgagga tgaatcccat gcatatggaa ttcattttcc
      781 tcccgcaagt gaaagattgt caaggctaga agaggcaata caaattatac gcaaaatgtg
      841 gactgaagag ccgtctgctt catttaatgg aaaatactat caaattcgta atgcatattg
      901 caatcctaag ccaatacaga agccttcgcc acctattcta gttggcggag gcggtgagag
      961 aaaaactctc aagatcgtag caaaatatgc tgatgcttgc aacctatttg gatctgttga
     1021 aacagtaaaa agaaaattga atattttaaa agagcattgt aaaagtgtag gaagggatta
     1081 cgattcaatt cttagaacaa agttgggcat tattgtggta gatgacgaca ggcaaatggc
     1141 cgaagaaaaa ataaaacaaa tctttaaagg aatgcctgaa gaacaaatta gagagtttgc
     1201 gatatatgga acgcccgaag atgtactaag agagatagaa ttatttgaac aagttgatat
     1261 tcaatatctt atagtggatc tagatcc
//
LOCUS       DATLQL010000258         1031 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_239917, whole genome shotgun sequence.
ACCESSION   DATLQL010000258 DATLQL010000000
VERSION     DATLQL010000258.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1031)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1031)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1031
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_239917"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..983)
                     /locus_tag="VNB68_02700"
     CDS             complement(<1..983)
                     /locus_tag="VNB68_02700"
                     /inference="COORDINATES: protein motif:HMM:NF024808.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HVD36292.1"
                     /translation="MVEPRDRWEKALIPMALQNLTARHPELDIQVNYTILPYDNAREQ
                     MLKALGNHSNIDLISVDQIWLGEFAEKRYLTDLGNYSKTWGKLDDWYESNLDGGVYND
                     KIYGIWAWTDVRSIWYWKDLLNKSAIDPNSLKLWDSYIGSAKKLNAALNDQGIQGVEL
                     IGGPSSQNEWYPYLWMLGGSIVESRPNHPAKEFYWFPSYNSTQGVKALEFFKKLVDNG
                     VKPITIDFEKEFANKKYAVMLGGSWVPGSFSSLTKQDIEQQIGMIPMFPVPNENTTTS
                     TIMGGWLLGIPDSSKNKDLTWELITTMLEPHILSSMLAEFGYLPTQIPIGEG"
BASE COUNT          280 a          216 c          180 g          355 t
ORIGIN      
        1 ccttcaccta taggtatttg agttggaagg tatccaaatt ctgccaacat agacgaaagt
       61 atatgtggct ctaacattgt tgtaattaat tcccatgtca agtctttatt ttttgagctg
      121 tctggtatgc ctagtaacca tccacccatt atagttgatg ttgtagtatt ttcatttggt
      181 actggaaaca ttggtatcat ccctatttgt tgttcaatgt cctgttttgt aagagaagaa
      241 aaagatccag gcacccatga gccacccagc atgactgcat actttttatt tgcaaactct
      301 ttttcaaagt caatagttat tggcttaact ccattatcaa ctagcttttt gaaaaattct
      361 aatgccttaa ctccttgggt actattatag ctgggaaacc aataaaactc ctttgcaggg
      421 tgatttggtc tactctcgac tatagatcct ccaagcatcc atagataggg ataccattca
      481 ttttgggaac taggtcctcc tatcagctct actccttgta ttccctgatc atttagtgct
      541 gcgttaagct tctttgctga cccgatatag ctatcccaca gcttcaaaga attggggtca
      601 atagctgatt tgtttaagag atccttccaa taccatattg atcttacgtc agtccatgcc
      661 caaattccat aaattttatc gttatataca cctccatcta aattagattc ataccagtca
      721 tcaagtttgc cccaagtttt agaatagtta ccgaggtctg ttagatatct tttctctgca
      781 aactcaccaa gccagatttg atctacagag attagatcta tattagaatg attgcccagt
      841 gcttttaaca tctgttcccg agcattatcg tatggtagaa ttgtgtaatt aacttgaata
      901 tctagttctg ggtgtctggc tgttaaattc tgcagtgcca ttggaataag tgccttttcc
      961 catcgatccc ttggctcaac caatagggta tttagtgtaa ccttttcttt ggcaaaagac
     1021 ggaatagcgg a
//
LOCUS       DATLQL010000259         1231 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_63688, whole genome shotgun sequence.
ACCESSION   DATLQL010000259 DATLQL010000000
VERSION     DATLQL010000259.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1231)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1231)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1231
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_63688"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..939)
                     /locus_tag="VNB68_02705"
     CDS             complement(<1..939)
                     /locus_tag="VNB68_02705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HVD36293.1"
                     /translation="MRLLEYQGKELFLQYQIPIPKSYLANSLREAKELSSKFEFPLIL
                     KSQVAAGGRGKAGAIVKCRTQADVVAKFPELMNKEIKGELPRSILLEQGVHIEQELYI
                     SIFLNRGKRCYSLICSAQGGVEIEGVENKFIEDLPSSGITQSLAREAASKLNLQGQTA
                     ESFENFVMNLSRLVFEKEAELAEINPAVVLGDGSLMALDAKVIIDDNALFRHPELSKY
                     QHMSESELQAGKSGFSFVELDGNIAIIGNGAGLVMSTLDMVSDQGGKAGCFLDFGGSA
                     TAETIYDSLKVISKTKRIRAILINLFGGIVKTSMVAK"
BASE COUNT          352 a          278 c          218 g          383 t
ORIGIN      
        1 ctttgctacc atgcttgttt tcacgattcc cccgaaaagg tttatcaata tagctcttat
       61 cctttttgtc ttgctaatta cttttaagga atcatatatc gtttccgcag ttgcactccc
      121 accaaagtcg agaaaacagc ccgcttttcc gccttggtct gacaccatat caagagtgga
      181 cattacaagt cctgctccat tgcctataat agcgatgttt ccatctagtt ctacgaagga
      241 gaagccgctt tttcctgcct gcagttcaga ttcagacatg tgttgatact tgctgagctc
      301 aggatgtctg aataaagcat tatcgtcaat aatgacttta gcgtcaagag ccataagaga
      361 tccatctcca agaaccaccg caggattgat ctcagctaat tctgcctcct tttcgaaaac
      421 caaccttgac aagttcatga caaaattctc gaatgactca gccgtttgtc cctgcaagtt
      481 aagtttcgac gccgcttcgc gcgctagtga ctgagttatg ccagagctcg gaagatcttc
      541 tatgaacttg ttttccacac cttctatttc aactcctccc tgagcagaac agattaagga
      601 ataacacctc ttacctcggt tcaaaaaaat ggagatatag agttcttgct caatgtgtac
      661 tccttgttcg agcaaaatcg acctaggaag ttccccctta atttctttgt tcattagctc
      721 tgggaacttt gcgacaacat ccgcttgtgt cctgcatttg acgattgccc cagccttccc
      781 tcttcctcca gctgcaacct gtgacttaag tatcagtgga aattcaaatt tggatgataa
      841 ttcttttgct tcacgcaacg aatttgccaa ataagattta ggaattggaa tttgatactg
      901 aagaaataat tcttttccct gatattcgag taacctcatt ccgcggctag caaaaattgt
      961 aatggactca tttataattc tagtatacta aattatgcaa gatcgtgacc acaaacatta
     1021 aggtatcgcc taaaattata aatatattat atttttttac ccataagata tgttgttttc
     1081 aaaaatagca ctccgaattg gcaaatagcc gtttttgtgg tccgcctgaa tagagtataa
     1141 gagtcgaatc cgaattccgt gcaatgagca aaaaataagc tttaaatatt tagcttgtgt
     1201 cagacgaata atggctgaaa aaatgacggc t
//
LOCUS       DATLQL010000260         1710 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_420683, whole genome shotgun sequence.
ACCESSION   DATLQL010000260 DATLQL010000000
VERSION     DATLQL010000260.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1710)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1710)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1710
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_420683"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..423
                     /locus_tag="VNB68_02710"
     CDS             <1..423
                     /locus_tag="VNB68_02710"
                     /inference="COORDINATES: protein motif:HMM:NF012626.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36294.1"
                     /translation="NKMLKVDADAGGEGSSAGFIMPKFNMCRDGFLASGIISSLDTKL
                     IEECIQFASQYSQIRTKIALSSDLHNEVIEKLTEILRGESSQILTIDGIKATIDEDSW
                     VLIRGSNTEHAIRISIESKAATLETLYDRISNKVRSIL"
     gene            420..1490
                     /gene="thiL"
                     /locus_tag="VNB68_02715"
     CDS             420..1490
                     /gene="thiL"
                     /locus_tag="VNB68_02715"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: protein motif:HMM:TIGR01379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009030 - thiamine-phosphate kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HVD36295.1"
                     /translation="MTRLNEKEIVNLFVSKLTNHSRIKTKYENNHIGHNYSAIRFGYD
                     DVSVISFKKKLKRELTLILKCDMLVESTDAPPAMKPWQIARKSIVSCVSDFSAKGIEP
                     SYLSLISIGIPPRYSKNDILELVRGFQISSKEFGVIFVGGDTNESNELIIDCCLVGFS
                     KNDNIPSRSGAAPGDFIVVSGEFGYSASGLMILTEGARAGGYFKNKAVSSVVTPKPQQ
                     KFGTSLAKYFSSSIDSSDGLAVSLNELAIQSGVNFIVDKVPSAKGIERFAKDNEFLDP
                     RELIFHGGEEYHIVATVPSKNMKRIKSIVEKLRLSMFVIGKVTKGNGKVFTTSVEKLK
                     KKYVLLDNRGFLHLANKEEDNH"
     gene            1542..>1710
                     /gene="rpsK"
                     /locus_tag="VNB68_02720"
     CDS             1542..>1710
                     /gene="rpsK"
                     /locus_tag="VNB68_02720"
                     /inference="COORDINATES: protein motif:HMM:NF012628.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HVD36296.1"
                     /translation="MSNLEDVTQYKWGVAHIFSSYNNTLVHITDISGAETVSFSSGGR
                     HVTADRYESSPY"
BASE COUNT          581 a          291 c          364 g          474 t
ORIGIN      
        1 aacaaaatgt taaaagtaga tgctgatgca ggtggtgagg gaagcagtgc tggatttatc
       61 atgccaaaat ttaacatgtg cagggatgga tttttggcca gtggcattat ctcctcactc
      121 gatactaaat tgatagagga atgcatacaa tttgcctccc agtactcaca aataagaaca
      181 aaaatagctt tgtcttctga tctccataac gaagttatag aaaaattaac tgaaattcta
      241 agaggtgaat catcacagat tctgacaata gatggtatta aagccacaat tgatgaagat
      301 tcgtgggttc taattagagg ttcaaataca gaacacgcta ttcgaatttc aatcgaatca
      361 aaggcagcta ccctggagac gctttatgat agaataagta acaaggtccg atcaatttta
      421 tgacaaggtt aaatgaaaag gaaatcgtaa accttttcgt aagtaaactt acgaatcata
      481 gtcgcatcaa aacaaaatac gaaaataatc atattggaca caattactca gcaatacgat
      541 ttgggtatga cgacgtatca gttatttctt ttaaaaaaaa actcaagagg gagctcacac
      601 tcattttgaa atgtgatatg cttgttgaga gcacggatgc acctcccgcg atgaaaccat
      661 ggcaaatagc aagaaagagc atcgtatctt gtgtgagtga tttctcagca aaaggcattg
      721 agccatctta tctgtcgtta atttcgatag ggatccctcc aagatattca aaaaacgaca
      781 ttctagaatt agtaagaggc ttccaaatct catcgaaaga gtttggcgta atttttgtag
      841 gtggggacac caatgagtcg aatgaattaa tcatagattg ttgtttggta gggttttcta
      901 agaatgataa tattccctct agaagtggcg cagcaccagg agactttata gtcgtgtcag
      961 gtgaatttgg atactctgct tcaggattga tgattttgac ggagggtgct agggccgggg
     1021 gatattttaa gaataaggcc gtttcttcgg tggtaacacc aaaacctcaa caaaagtttg
     1081 gaacatcttt agcaaagtat ttttcctcat ctatcgattc aagcgatggt ctagcagttt
     1141 cacttaatga attagcaata cagagcggtg tcaactttat tgtagacaaa gtaccctctg
     1201 ctaaaggaat cgaacgattt gcaaaagaca atgaattctt ggatcctagg gagttaattt
     1261 tccacggagg agaagaatat catatagtag caacagttcc gtcaaaaaat atgaaacgga
     1321 taaagtcaat agtagaaaag cttcggctat caatgtttgt aataggcaag gtgaccaaag
     1381 gtaatggcaa ggtattcact acaagtgtgg agaaattgaa gaaaaaatat gtacttcttg
     1441 ataacagagg ttttcttcat ttagccaaca aggaagaaga caaccattag gagctgtcaa
     1501 agttaatatg tagcccctaa caaacgagtt tctgttcttc aatgtcaaat ttagaggatg
     1561 ttacgcagta caaatgggga gtcgcgcaca tatttagtag ttacaataat accttggttc
     1621 atattacaga tatcagtggc gccgaaacag tctcatttag ctcgggtgga agacacgtga
     1681 cagccgacag atatgaatcc tcaccctatg
//
LOCUS       DATLQL010000261         1278 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2194038, whole genome shotgun sequence.
ACCESSION   DATLQL010000261 DATLQL010000000
VERSION     DATLQL010000261.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1278)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1278)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1278
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2194038"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            110..>1278
                     /locus_tag="VNB68_02725"
     CDS             110..>1278
                     /locus_tag="VNB68_02725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004813 - alanine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006419 - alanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase-related protein"
                     /protein_id="HVD36297.1"
                     /translation="MQKQDLINLFSSNSDKYYRVSLFDRNGFKRQNCTICRKFFWSIN
                     ERRFCPDHENYSFIGNPPTSKRLDFITAWNEIKEYFSDNNHTITRRYPVVCRWRDDLY
                     FTIASIVDFQRVMRGKVVFELPANPLVVPQICLRFNDIENVGLTGRHYTGFCMIGQTC
                     DADAPGGYWKDRCIELDYGMLTNKLGINADEITFVEDVWMGAGAFGCSLEYYVRGLEL
                     GNAVFTEFEGSEGNYHAMNNKIIDMGAGLERLSWITMGTPTSYDCNFGNVIKKLIESV
                     GIEENSEFLSKYFGSLSSKYIDYEFDIKSLKNILAKELKISTEELSKIVSPYEAIYTV
                     ADHTRTLLFAISDGSLPSNVGGGHNLRVILRRALSILDRLGWNIALEDVVDMHID"
BASE COUNT          398 a          222 c          281 g          377 t
ORIGIN      
        1 gcaaagtaaa gtttaggcaa gatgccaaag ggataatgat catcaaattc atttttagcg
       61 gtaatggatt acaaaggcat taataatctg cctcagtggg tgtctatgat tgcaaaagca
      121 agatctaatt aatctctttt cttcaaactc tgacaaatat tatagagttt ccctatttga
      181 taggaatggt ttcaaaagac agaattgtac catctgtcga aaatttttct ggtcaattaa
      241 cgagagaaga ttttgtcctg atcatgagaa ctacagcttc attggcaatc cacctacttc
      301 aaagaggctg gattttatta ctgcttggaa tgaaatcaaa gagtacttta gtgacaacaa
      361 tcacacaata actcgaaggt accctgttgt ttgccgatgg cgtgatgatc tctactttac
      421 tattgcctcc atagttgatt ttcagagagt gatgagagga aaagttgttt ttgaattgcc
      481 cgccaatccc ctagttgtgc cacagatatg tttaagattc aacgatatag aaaatgtcgg
      541 cctcacaggt agacattaca ctggtttttg tatgatagga caaacttgtg atgctgatgc
      601 tcctggagga tattggaagg ataggtgcat tgagcttgac tatggaatgc tcacgaataa
      661 actcggaatc aatgcagatg aaattacttt tgtggaagat gtatggatgg gagcgggtgc
      721 cttcggatgt tctttagagt actacgtacg tggacttgaa ttgggaaacg cagtttttac
      781 agaatttgaa ggaagcgaag gcaactatca cgctatgaat aacaaaataa tagacatggg
      841 agcgggcctt gaacgactct catggatcac tatgggaact ccaaccagtt atgattgtaa
      901 ttttgggaat gtcataaaaa aactaattga gtcggtagga atagaagaga attcagaatt
      961 tctgtcaaaa tatttcggga gcctttcatc taaatatatt gattatgaat tcgatataaa
     1021 atctcttaag aatatcctgg caaaggaact gaagatatct accgaggaac tgtcgaaaat
     1081 agtttcgccc tacgaagcca tttacactgt ggcagatcat accaggactc ttctattcgc
     1141 aatttctgat gggtccttgc cctccaatgt tggaggagga cataacctga gagtcatact
     1201 ccggcgagca ctttccatcc tcgatcgcct aggatggaat attgcactgg aggatgttgt
     1261 agacatgcat attgatta
//
LOCUS       DATLQL010000262         2146 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_64547, whole genome shotgun sequence.
ACCESSION   DATLQL010000262 DATLQL010000000
VERSION     DATLQL010000262.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2146)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2146)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2146
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64547"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(31..1218)
                     /gene="cofG"
                     /locus_tag="VNB68_02730"
     CDS             complement(31..1218)
                     /gene="cofG"
                     /locus_tag="VNB68_02730"
                     /EC_number="4.3.1.32"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7,8-didemethyl-8-hydroxy-5-deazariboflavin
                     synthase CofG"
                     /protein_id="HVD36298.1"
                     /translation="MSTLNGGFNAVVADMLDGKTISKATACELINSSEVDMIAYIAKL
                     IRDQSKQRCITYSRKVFINLINLCRDTCSYCTYKKEPNEQAASLMTPSQVLAIAEVGK
                     KFKCTEALFITGEKPELKYGEARTWLKSLGYSSTIEYIAEMSETILRKTGLLPHTNAG
                     NLTKNEILLLKDTNVSIGLMLESSSERLLMAGMPHEMAPSKNPKIRVKTLENSGQLKI
                     PTTTGILVGIGETPEELIDSLFVIKEINRKYNHIQEVIIQNFSPKPETKMSDCCGPLP
                     SYFQKVIALARIILGADMNIQVPPNLNRSIFGKFLDAGINDWGGISPVTIDHVNPEFP
                     WPTIDDVKTVTTTRGYNLRARLPVYPEFLYSRDEEFIPGSLRSYIDMLSDNSGLVRED
                     YLN"
     gene            complement(1393..>2146)
                     /locus_tag="VNB68_02735"
     CDS             complement(1393..>2146)
                     /locus_tag="VNB68_02735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyl transferase"
                     /protein_id="HVD36299.1"
                     /translation="LAIGHLQQQNLDAITAIPKLLCEDIWIRITLPILSTFLNTRFSA
                     LRVNNPKTKTGYFFGSFFAITRSTYEAIGTHKNVRSELIEDGALGGKVKKSKFKMKMV
                     RGEHYVTAVWARDLKSLWNGLRRLIIPLYNQNNLWTSLMVVSVFFLLLSPFLLLPYSL
                     SLLFRGPDHYLVDQILVHSNVMTISVILLSTAIQLRFGLSQNPIYALACPLGSAIISL
                     SFISSILDANKIDSVNWRDRHYTVNQSQHPLN"
BASE COUNT          649 a          424 c          394 g          679 t
ORIGIN      
        1 gatcagtaga tctcaaaaga gaatcgacgt tcaatttaga taatcctctc taaccagacc
       61 cgaattgtct gataacatat ctatataact tctaagacta cctggtataa attcttcatc
      121 acgactatat aaaaactcag ggtatacagg caggcgcgcc ctaaggttgt atcctctcgt
      181 agttgtaaca gttttgacat catctatagt tggccaggga aattccggat tcacgtgatc
      241 aatcgttaca ggagatattc cgccccagtc attaattcct gcatcaagaa atttcccaaa
      301 aatgcttcga ttcagattag gaggaacttg aatattcatg tcggcaccca gtatgatcct
      361 agccaatgct ataacttttt gaaaataact aggtaatggg ccacagcaat ctgacatctt
      421 ggtttctggt tttggcgaaa aattctgtat tatcacttcc tgaatatgat tatacttgcg
      481 attaatttct ttaatgacaa aaagcgagtc gatcaactct tctggagtct cacctatccc
      541 aacaagaata ccggttgtcg tgggtatttt tagctggccg gagttttcga gagttttcac
      601 tcttatcttt ggatttttgc ttggagccat ttcatgaggc attcctgcca tcaataatct
      661 ctcgcttgac gactcaagca ttagtcctat actaacatta gtatctttaa gcagcaaaat
      721 ttcatttttt gttaggtttc ctgcgtttgt gtgtggcagc aacccggtct ttcgaagaat
      781 cgtttcactc atttcggcta tatattcaat ggttgacgaa tatcctagag attttagcca
      841 tgttcttgct tctccgtact tcaactcagg cttttctcct gtgatgaaca acgcttcagt
      901 acatttgaat tttttgccaa cttctgcaat tgcaaggacc tgtgaaggtg tcatcagaga
      961 tgctgcctgt tcatttggct cttttttata agtgcaataa gaacatgtat cacgacatag
     1021 atttataaga ttaataaaga ctttacggga ataagtaatg catcgctgct ttgattgatc
     1081 tcgaatcaac ttggcaatat aagcaatcat gtcaacttct gaagaattta ttaattcaca
     1141 tgcagtagct ttagagatag ttttgccatc taacatatct gctacaactg cattaaaacc
     1201 tccgttaagt gtgctcatga gcatatctaa aatccttctt ctggtagtta agcccagtcg
     1261 ttgttaataa atacttatga agttagagtt ttcaacagcg atctaggttg acaaaggttc
     1321 agttcggatc caaaatccat atcatgtttg atagaagaat ttttagttta gtataataaa
     1381 aatcattctc aactagttca acggatgctg ggattgattt acagtatagt gtctatccct
     1441 ccaattaaca gagtcgatct tgtttgcatc gagaattgac gagatgaaag atagtgagat
     1501 aatagcactg cccaaggggc aagccaaagc atagatagga ttttgagaca aaccaaacct
     1561 tagttgtata gcagtagata acaatatcac agaaattgtc ataacgttac tatgtaccag
     1621 tatctggtct actaaataat gatcaggtcc ccggaacaat aacgataacg aatatggcag
     1681 caacaaaaac ggcgagagta agagaaagaa tactgaaacg accatcaaag atgtccaaag
     1741 attattctgg ttatatagag gaataattaa tctgcggaga ccattccata ggctcttaag
     1801 atcccttgcc cagacggcag ttacataatg ctcgcccctg accattttca tcttgaattt
     1861 ggattttttt actttgccac ctaacgcacc atcttctata agctcgctcc ttacgttctt
     1921 atgcgttcca atagcttcgt atgtacttcg agtaatcgca aaaaaacttc caaaaaaata
     1981 cccagttttc gttttgggat tgttcactcg taatgctgaa aatctggtgt tcaaaaaagt
     2041 tgagagaata ggtaacgtaa tccttatcca aatatcttca cacaaaagct ttggtatagc
     2101 agtaatggca tctaggtttt gctgttgtag atgtcctata gcgaga
//
LOCUS       DATLQL010000263         1107 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1837980, whole genome shotgun sequence.
ACCESSION   DATLQL010000263 DATLQL010000000
VERSION     DATLQL010000263.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1107)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1107)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1107
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1837980"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            108..509
                     /locus_tag="VNB68_02740"
     CDS             108..509
                     /locus_tag="VNB68_02740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36300.1"
                     /translation="MSEGKEEIISAMEQFEKVHEKYLPKVDRRLVIDLFLRLRENPND
                     KPMYTVETFTEEGTNHEEIRNDIIRRTGMAPQFFDKGTHVVVHHALDYDLLKYINDHP
                     KVIEIRGTSLGSMASIGASYESSADIRKGES"
BASE COUNT          395 a          184 c          240 g          288 t
ORIGIN      
        1 attcacgaga gaggtttgga ggaagagaaa atcagtaact aagtcctaca ccatccaagg
       61 aatactctta taaccaaatc agtgacaaca acttttagcg atacgagttg agtgagggaa
      121 aagaggaaat aatttctgca atggaacagt ttgaaaaagt gcatgaaaag tatctgccaa
      181 aggttgaccg cagattggta atcgatttat ttttgcgtct gcgagaaaat ccaaatgaca
      241 aaccaatgta tactgttgaa actttcacag aagaagggac caaccatgaa gagattagaa
      301 atgacataat acgaaggaca ggaatggctc ctcaattctt tgataagggg actcacgtag
      361 ttgtgcatca tgcactggat tacgatttgc taaagtacat caatgaccat ccgaaggtca
      421 tagagattag aggaacatcc ttgggtagca tggcgtcaat aggcgcttct tatgaatcgt
      481 ctgcagacat acgcaaagga gaaagttagt agtagtagta agtaacccta attgacacat
      541 tccagaacaa gaattcggta tatgcaattc aatcatacaa gcagtcaaaa atgactgtct
      601 attgagggta aaacacgaaa gatagttgat attttatgag taattcatga agcgtagtta
      661 cctccttttt ttatcctcac ggaggaagca ccgcttccta catacaaaaa acaatataat
      721 aaaaattacg tatggaaatc ggtcaagcta atatcccatt tgttgtgagg gtcgctttct
      781 aaaagtgact gttggaacta gatatacctg tcattctatt ttgtctcgaa ttatgagctt
      841 cattttctat tgcaagtgct attgtaaata aggtattgtt cgaccaatat tgaggagagt
      901 atcaaagaca aaattaaact gagttgcaag aaagaaagat aaggaaagaa aaaaaagagg
      961 gagagaggga gagcgacctt ttttctaaca gctgctagaa gaataacaag aagaaaggac
     1021 gagtctatat tctctcgatt atgggcaggg tggacagact gggccgtccg tatctaggcc
     1081 atataattca agcaagtcac caatttc
//
LOCUS       DATLQL010000264         5103 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_598261, whole genome shotgun sequence.
ACCESSION   DATLQL010000264 DATLQL010000000
VERSION     DATLQL010000264.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5103)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5103)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5103
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_598261"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1155
                     /locus_tag="VNB68_02745"
     CDS             <1..1155
                     /locus_tag="VNB68_02745"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF012387.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HVD36301.1"
                     /translation="NGTINQTRIATIAKMFMDQTENGLKIAKDLKADYILIYVVGQRF
                     SGNNGTDFYVLGSGGDESKKQWFIRIGGFKEDKYLQQDGFTPTPYFWNKTLLGSIIPF
                     TPQSYASFDKGMLTNLAEQYQPGTVALYTKDIKYPADGRSDQPLKLVYASDSFNSNQT
                     GLFFGVLIYQVNHNYVPKPTSDPYNEKDTEATGTSFPQAGNIGGGRANTTESREVARI
                     DTTQGPITVAFYPNAAPNHVANFEKLAKSGFYNDTIFHRIVKGFVIQGGDNNTKPDGK
                     PREFWGTGGPGYSILSEFNDIPHVRGIVSMARSSDPNSAGSQFFIVSNDSRFLDGQYT
                     VFGHVIEGMDVVDKIANLTTIQNDQPKDPDAARIQSITILNRNSLQNMSK"
     gene            complement(1210..2187)
                     /locus_tag="VNB68_02750"
     CDS             complement(1210..2187)
                     /locus_tag="VNB68_02750"
                     /EC_number="2.5.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyhypusine synthase"
                     /protein_id="HVD36302.1"
                     /translation="MSPRKSEQKKSPNKKILVRGVKDYEIKSDSVTSIVNDMANSGGF
                     ESTNLSVGTQILRKMGKDPSCTRFLSFVGAILSTGVRGIIRDMLKHKMFDCVITTCGA
                     LDHDIARASAKYYSGDLRMDDRMLHKHNVHRLGNILVPQDSYGPRIEEAVQSCLKTIY
                     YDKSIRNISSHELIKHIGSTLDESSFLYWAFKNDIPVIVPGIVDGAVGSQIWFFHQQH
                     KDFNIDILSDETKLSDFVYEAKKTGAFMIGGGISKHHTLWWNQFRGGLDYAVYITTSS
                     EWDGSSSGALVAEAISWGKVKDMAMQTTIHGEATILLPFIYSTLTTNPK"
     gene            complement(2312..2758)
                     /locus_tag="VNB68_02755"
     CDS             complement(2312..2758)
                     /locus_tag="VNB68_02755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HVD36303.1"
                     /translation="MEKQFDERNVPFFESLLDHEDYVIRTRSVCILANIAGEKAVESI
                     AKVLKNDADALVRHEAAFSLGQLGFTSGTKPLAEAVESDSSFFVRHEAAVALGVIGSE
                     DSRKTLVDALADSSEEVRESAIIALANLDYLTTTNRNNSFTKMTGG"
     gene            2923..3363
                     /locus_tag="VNB68_02760"
     CDS             2923..3363
                     /locus_tag="VNB68_02760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36304.1"
                     /translation="MTIKDVLDSTYPQYKANHWDIKCMQGEYQHFGIFWFRYGTPVDK
                     EPAHGISFYFNDVPQITIQNLIEFLQSKYGGTVLHRQSRVFLQGSNEFSDPQTIGQLA
                     NEISVKFNGPVELTIEFEKVTAEEQEKNLFNLPANKALPIVGPD"
     gene            complement(3544..3972)
                     /locus_tag="VNB68_02765"
     CDS             complement(3544..3972)
                     /locus_tag="VNB68_02765"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HVD36305.1"
                     /translation="MAERKNRNPTPRIMIVDDEADILSVIKRGLESDKEFEVEAFSAA
                     DEAISNFETHPPNYYDLVITDIRMPNMNGFELYRHIKEADPSVRIAFITAFEINKAEF
                     IKVIPSVEVIDFISKPVSIANLKEKIRSMLPDYFVNAPTM"
     gene            4298..4789
                     /locus_tag="VNB68_02770"
     CDS             4298..4789
                     /locus_tag="VNB68_02770"
                     /inference="COORDINATES: protein motif:HMM:NF024986.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HVD36306.1"
                     /translation="MSAPDKQGWLELLTESKIRDFNEWRLTNLLVRPDMSGMDFSNKD
                     LSGALLNGIRCVETKFTECNLSKTNLVQAEMTNSNFQGADLTEALLMYGNLKKSIFVD
                     TNLTLTNFMWAELRECDFSGSRMKKTIFVEAKMQNAKLDNVLLDTVYLKQANLEGNSW
                     ATG"
     gene            4862..>5103
                     /locus_tag="VNB68_02775"
     CDS             4862..>5103
                     /locus_tag="VNB68_02775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36307.1"
                     /translation="MGILQLLVVIDTIRTIKRLGKWSANRVIGRRRPLIAVFSLTHYC
                     NFYCPMCPFGDADKGSQLKLVREKDLTTDQWKYIFN"
BASE COUNT         1637 a         1008 c          962 g         1496 t
ORIGIN      
        1 aacggaacaa ttaatcaaac ccgaattgct accattgcaa aaatgttcat ggatcaaact
       61 gagaatggat tgaagatcgc caaagatctt aaggctgact atattttgat atatgttgtt
      121 ggtcagagat tcagtggaaa taacggaact gatttctatg ttttggggag tggcggtgat
      181 gaaagtaaga aacagtggtt tattaggata ggtggattta aagaagataa atacttacag
      241 caagacggat ttacgcctac accatacttc tggaataaaa cgcttctcgg cagtataata
      301 ccatttacgc ctcagtccta cgcatcattc gacaaaggca tgcttactaa tttagcagag
      361 cagtatcaac caggcacagt tgcgctgtat acaaaagata tcaaatatcc tgccgatgga
      421 agaagtgatc aacctttgaa attagtttac gcatctgaca gctttaatag taatcaaaca
      481 ggactatttt ttggtgtttt gatttatcaa gtcaaccata attatgtgcc aaaacctacg
      541 tcagatcctt acaacgaaaa ggataccgag gccactggaa cctcattccc ccaagccggt
      601 aatataggcg gcggccgtgc aaataccacc gaatcaaggg aagtagctag gatagacaca
      661 acacagggcc cgataacagt agcattctat cccaatgctg ctcctaatca tgttgccaac
      721 ttcgagaaac ttgcaaaaag tggcttttat aacgacacga tattccatag gatagtcaaa
      781 ggatttgtaa tacagggtgg agataacaac acgaaaccag atggcaaacc tagagagttc
      841 tggggtacag ggggtccagg atattcaatc ctatctgaat ttaatgatat acctcacgtg
      901 cgaggaattg tgtcaatggc tagatccagc gacccgaata gtgccggctc ccagttcttt
      961 attgtatcaa atgattcaag attcttagat ggccaataca cggtttttgg acatgtgatc
     1021 gaaggaatgg atgtagtcga taaaattgct aatctcacaa caattcagaa tgatcaacca
     1081 aaagatcctg acgctgcaag aatacaatct atcactatcc tgaatagaaa cagtttacaa
     1141 aatatgagta aataagtgca tcaaaacgag actctagtaa tatgtgtcga gttaagtata
     1201 aggtgttacc tatttcggat tagttgtcag agtagaatag ataaaaggca gtagaatggt
     1261 cgcctcccca tgaatagtag tctgcattgc catatctttg accttgcccc acgatatggc
     1321 ctcggccacc aaagctccac tcgaactacc gtcccactct gatgatgttg ttatgtacac
     1381 ggcatagtca agtcctcctc taaattggtt ccaccacaga gtatggtgtt ttgaaattcc
     1441 tccaccaatc atgaatgcgc cagttttttt tgcctcataa acaaaatctg atagttttgt
     1501 ttcatcagaa agaatatcga tattgaaatc tttgtgttgt tgatggaaaa accagatctg
     1561 gctgccaact gcaccatcga ctatacctgg aactattacg ggaatatcat ttttaaatgc
     1621 ccaatagaga aatgacgatt catcaagtgt gctgccaata tgtttgatga gttcatgtga
     1681 ggagatatta cgaatactct tgtcataata aatagtcttg agacatgatt gaaccgcctc
     1741 ctctattcga ggtccgtaac tatcttgggg cactagtatg ttacccaatc tatgtacatt
     1801 gtgtttatgc agcatccgat catccattct caagtctcca gaatagtatt ttgcactggc
     1861 acgtgcaata tcgtggtcaa gggcaccaca agttgtgatt acacagtcga acattttgtg
     1921 ctttaacatg tctcgaataa tccctcttac tcctgtagat aaaatggcac ccacaaaaga
     1981 aagaaatcta gtgcaggagg gatctttccc cattttgcgc aatatctgcg tgcctacaga
     2041 tagattagtt gattcaaaac cgccagaatt cgccatatca tttacaattg aagtaaccga
     2101 atctgacttg atttcgtaat cttttacacc tctgactagg atcttcttat taggactctt
     2161 tttctgctca ctctttctcg gggacacaat aggtatcaca agaaggtgta taaaatagat
     2221 ttgctctttt aataaaacaa atcaatacta aaaaaatatt aaaataaatg atatttttaa
     2281 aattacatca attcataaaa agtaaattaa cttatccacc agtcattttc gtaaacgaat
     2341 tattcctgtt agtcgtcgtt agatagtcca agtttgctag agctattatt gcggactccc
     2401 tcacctcttc actagagtcg gctaaagcat cgactagggt ttttcttgaa tcttcagacc
     2461 ctataactcc caaagctacg gctgcttcgt gacgaacaaa gaaacttgag tcggattcta
     2521 cagcctcagc aagcggttta gtcccacttg tgaacccaag ttgaccaaga gaaaatgcag
     2581 cctcatgccg gacaagggca tctgcatcat ttttcagcac tttagcaata gattcgacag
     2641 ctttttcgcc tgcaatattt gccagaatac atactgatcg agttctaatt acgtaatctt
     2701 catgatctaa caaggactcg aaaaaaggaa catttctctc atcgaattgt ttttccattt
     2761 cacccaacaa tatcaatcga gaagacgaat ttccgtctgt attatattcc ataggtattt
     2821 catgaggtaa gtagggtatt ttatctttct tccgtgactg ttcgccacat tattataatc
     2881 cttgtatttt aaccttccat gttgcgtatt aggtactggc gattgactat aaaagacgtc
     2941 cttgattcta catatccaca atataaagca aatcactggg atatcaaatg tatgcaaggc
     3001 gagtaccagc attttggcat attttggttc agatacggca ctccggtaga taaggaacca
     3061 gcacatggaa ttagttttta ctttaatgac gtgccacaaa taactattca gaatctgatc
     3121 gaattcttgc aatcaaaata tggtggtact gtattgcaca gacaaagccg ggtttttcta
     3181 caaggttcaa atgagttttc agatccacaa acaataggtc agctagcgaa tgaaattagt
     3241 gtgaaattta atggaccagt agagctgaca atagaatttg aaaaagtaac agcggaagaa
     3301 caagaaaaaa acttattcaa ccttccagca aataaggcat taccaatagt aggtccagat
     3361 taattaactg attaacaaat tcatttattg attaggcaat ttatacgagt accagttttc
     3421 ggcaattaat taccttagaa tttaccacgt ttacgttaaa taaaactctc gcgaaacata
     3481 tagccgtaat ttcccttttt aaaagattaa tgataacaaa acaatattcc ttttcagttg
     3541 actttacatt gttggcgcgt tgacaaaata atctggtagc atcgatctta ttttttcctt
     3601 aaggtttgca atgcttactg gcttactaat gaaatcaatg acttctactg acgggattac
     3661 tttgatgaac tctgctttgt ttatttcaaa tgcagtaata aaagcaatcc tcactgaggg
     3721 atcagcttcc tttatgtggc gatacaattc gaatccattc atattgggca tacgaatatc
     3781 tgtgattact aaatcgtaat aatttggtgg atgagtttca aaattactta ttgcctcatc
     3841 tgccgctgag aaagcctcca cttcaaattc tttgtctgat tccaatccac gctttatgac
     3901 tgatagaata tctgcctcat catctacaat cattattcgc ggcgtgggat ttcggttctt
     3961 tcgttcagcc attgaatagt attcatacaa tatctatata tattaagtga atacacaatc
     4021 aaaaatagaa tatttattac tcttaatgaa gacagagtct gtgcagaaag attcaaagta
     4081 tcgaaaacgg atagtcatcc gtcgtcaatc cagctcaatt gattcgacat atcggagata
     4141 gcaaagccaa ctagaaaaat ctgtctccta cttctctcgt catagatgat aactagtaag
     4201 attgaccacc aaattaaggc tgtgggccaa agagttggct tctggcttct tgttaaggcg
     4261 aaaattgata taagtaattg ataaatccga aagaaagatg tccgcgcctg ataaacaggg
     4321 atggcttgaa ttattgacag aatcaaagat tagagatttc aatgaatgga gattaacaaa
     4381 tctccttgtg cgccctgaca tgagtggaat ggatttttca aataaagatc tatcaggagc
     4441 actactaaac gggatccgat gtgtggagac gaaattcaca gagtgcaacc tctcaaagac
     4501 caatctcgtt caggcagaaa tgacaaattc aaattttcaa ggggctgact tgactgaagc
     4561 cttgttgatg tatggaaatt tgaagaagtc tattttcgtt gacaccaatt tgactctaac
     4621 caatttcatg tgggccgagc tacgagaatg cgattttagt ggttccagaa tgaaaaaaac
     4681 aatatttgta gaggccaaaa tgcaaaatgc aaaattagac aatgtcctct tggacacagt
     4741 ttatctaaag caagcgaacc tcgagggcaa ctcttgggca acagggtgac tttgaattta
     4801 ttagacacat ctgcatattt cctgcctttc tgtaaaaccc ctgccgaata gcttaataca
     4861 tttgggcatc ctacaattgc tcgtggtaat tgacactata cgtactataa agcgtctagg
     4921 taaatggtca gccaatcgag ttataggaag aagacgtcct ttaatcgctg tcttcagcct
     4981 cacacattat tgtaactttt actgcccgat gtgcccgttt ggagacgcag acaagggtag
     5041 ccaattaaaa cttgtaagag aaaaggatct gacgactgac caatggaagt acatcttcaa
     5101 taa
//
LOCUS       DATLQL010000265         4098 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_64947, whole genome shotgun sequence.
ACCESSION   DATLQL010000265 DATLQL010000000
VERSION     DATLQL010000265.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4098)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4098)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4098
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64947"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..464
                     /locus_tag="VNB68_02780"
     CDS             <1..464
                     /locus_tag="VNB68_02780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36308.1"
                     /translation="LKVLRTAADVVADNGRQVNENSTSIAMVPDDSAKRLASLDAEKY
                     GKMQQNDERMPEAYSQGMNILGKDLLENKNSILSSSNMISSLLSGGFSVNVDLTGISN
                     DDTNAILKAAYDLDFFRLISKHKICSLCGTRCYISQEKCQNCKSPYLSIIY"
     gene            551..3259
                     /locus_tag="VNB68_02785"
     CDS             551..3259
                     /locus_tag="VNB68_02785"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004748 - ribonucleoside-diphosphate
                     reductase activity, thioredoxin disulfide as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobalamin-dependent
                     ribonucleoside-diphosphate reductase"
                     /protein_id="HVD36309.1"
                     /translation="MAGVTEVNNSNEKTIIQIRKRDGRIVEFNQNKISNAIYRALIAM
                     GKSEYQLAEKLSNKVMQKMVQQRYGLDNTAMVPSVEDVQDIVESILIEEGLSDTAKAY
                     ILYRHERRKVRDEKMKILNKKDLDEVDKAFDVNSLRVLAARYLLRDNNNEIIEGPKSM
                     FERVAVLVTIPDMLHDTRIFSLAEGISQNIQEAEKYYSKIDDFDMKLKIGDYYLNKYH
                     FEAMIRHYVYLAKGGHMKVSFKELLRIIAEGSMSAFSERIIEYYNLMVSRDFLPNTPT
                     LMNAGAKLGQLSACFVLDMPDDMSKIMKSSTDAAMIFKSGGGVGINYSNLRPEGDIVA
                     STSGVASGPTSFMRIIDTITDVVKQGGKRRGANMGILEAWHPDIEKFVSAKTKPGVFE
                     NFNVSVGIWDDFWQSVVSEDNHKYTLKNPRTHEPIKQIDSHQLLDLIAFSAWKSAEPG
                     VIFFDNINRYNPCLTAKEGPLRATNPCGEQSLYPYESCNLGSINLGNFVKRKADGMFE
                     FDWQRYEQAVRLSTRFLDNVIDMNKYPVEEIDHNTKLTRRIGLGIMGIADLLFMLKVP
                     YNSKEGYDFMNKLAEAISYYSMEESVAIAKTRGPFPLFNKTEYVNGKIPVAGYYEIPK
                     EMHSYDWDSLIEKIKKNGIRNSWTSTIAPTGTLSMIADTSNGVEPIFALVFEKRVTVG
                     RFFYSNRVFENLLKEKGLYSDEILTKIANNYGSVRGLSEIPEWIQNIFVTAIDIHWTD
                     HLMAQAIWQKWISNAIAKTINMPADVNAEDVRASYLLSHELGLKGVTVYRDGSRHEQV
                     LHITGNDKKERNFIVRPSAHVADYIRSNIKQNYVRTQIEKIFKESEAIDELYIHPTTE
                     VKKTISSIATNEFCEDEACPSCKARLIITEGCNMCIECGFSSCGSG"
     gene            3464..>4098
                     /locus_tag="VNB68_02790"
     CDS             3464..>4098
                     /locus_tag="VNB68_02790"
                     /inference="COORDINATES: protein motif:HMM:TIGR00323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-6"
                     /protein_id="HVD36310.1"
                     /translation="MGIYKYDVYRSPNIGLFVKSNNSILSVPFGFAETKAKKLRDYLD
                     VDKMFYASVSGTRLIGPLTVMNNNGIILPSTASEEELQLFKQESKLNVDRLNSKFTAV
                     GNLISANDNGALVSSLIKAETHQQIRDILGVQVDTLSIAGFVQTGAMVVATNLGAAVH
                     PNASEEEVRKISEILKVEVEPATINGGIPYLSSGIIANSNSVVVGSLTTGP"
BASE COUNT         1393 a          696 c          878 g         1131 t
ORIGIN      
        1 tactgaaagt attgcgtaca gcggcagatg ttgtggcaga taatggtaga caggtaaacg
       61 agaattcaac aagtatagct atggtcccgg acgacagcgc gaaacgacta gcatcccttg
      121 acgctgaaaa atatggaaag atgcaacaaa atgatgaaag aatgccggag gcctattctc
      181 aaggaatgaa tatactaggc aaggatttgt tagaaaacaa aaattcgatc ctgtcatcat
      241 ctaatatgat tagcagtctt ctaagtggag gtttttcggt aaacgtcgac ctcactggta
      301 tttctaatga cgacacaaat gctatcttga aagctgcata tgatcttgat ttctttagac
      361 tcatttccaa acataagata tgttccttgt gcggtacaag gtgctatatt tctcaagaaa
      421 aatgtcaaaa ctgcaaatcg ccttatcttt caataattta ttgatgcaaa atcaaataat
      481 ttacacctct actatattat tttttagtaa gataaccctt ttaagctaag ctcttaatgt
      541 ataggacggg atggccggag ttactgaggt aaataattca aatgaaaaaa cgataataca
      601 aatacgaaaa agggatggaa ggatagttga atttaatcaa aataaaatct ccaacgcaat
      661 ttatagagcg ttaattgcga tgggcaagtc ggagtatcaa ctagcagaaa agttgtcaaa
      721 caaggtaatg caaaagatgg ttcagcaacg ttacggactt gataacactg ctatggttcc
      781 aagtgtagaa gatgttcaag atattgttga atcaatccta attgaagaag gattatcaga
      841 taccgccaaa gcctacattc tatacagaca tgagagacgc aaagttagag acgaaaagat
      901 gaagatcctg aacaaaaaag atttagatga agtagacaag gccttcgacg taaactcact
      961 gcgggtactt gcagctcgct acctgcttag ggacaataac aacgaaataa ttgaagggcc
     1021 aaaatcaatg tttgaaagag tggccgtcct agtgaccatt cctgatatgt tgcatgatac
     1081 tagaattttc tctttggccg agggtatctc acaaaatata caagaagcag agaaatacta
     1141 ttccaaaatt gatgattttg acatgaagct aaaaattggt gattattacc ttaataagta
     1201 tcattttgaa gcaatgattc gtcattatgt ttatctggcc aaaggtggac atatgaaggt
     1261 aagcttcaag gagctccttc gaataatagc agaaggcagc atgtcagcat tttcagaaag
     1321 gattatagaa tattataatc taatggtttc aagagatttc ctaccgaata ctcctactct
     1381 tatgaatgcg ggagcaaaac tcggtcaact ctcagcatgt tttgttctag atatgccaga
     1441 tgatatgtca aaaataatga aatcgtcgac agacgcagca atgattttca aatctggagg
     1501 gggagtggga attaactatt ctaacttgcg cccagagggt gatatcgtcg cttcaacatc
     1561 tggcgttgct tcaggaccaa cttccttcat gaggattata gatacaatta cagatgtcgt
     1621 aaagcagggc ggaaagagac gtggtgcaaa catgggaata ctagaggcat ggcatccaga
     1681 tatagaaaaa ttcgtcagtg caaaaacaaa accaggagta tttgagaact ttaatgtcag
     1741 tgtaggcatt tgggacgact tctggcaatc ggtagtaagt gaagataatc acaagtacac
     1801 acttaagaat cctaggacac acgaaccaat aaaacaaata gattcgcatc aactattaga
     1861 tttaatagcc ttcagcgctt ggaaaagtgc tgaaccaggt gttatctttt ttgataatat
     1921 taacaggtac aatccatgtc tgacagcaaa agaaggtcct ctccgagcaa caaatccctg
     1981 tggtgaacag tcactctatc cctacgaatc atgcaatctg ggatcaataa acctgggaaa
     2041 ttttgtaaag agaaaagcag atggtatgtt tgaatttgat tggcaacggt atgaacaggc
     2101 tgtacgtctg tcgacacgat tccttgacaa tgtgattgat atgaacaagt atccagttga
     2161 agaaattgat cataacacta aattaactag aagaattgga ttgggaataa tgggaatagc
     2221 agatctgctc tttatgctga aagttccata caattccaaa gaaggatatg atttcatgaa
     2281 caaattggct gaagccatat catattatag tatggaagaa agtgttgcta ttgccaagac
     2341 aaggggacca tttcctttat ttaataagac ggaatatgta aatggaaaga tacctgtcgc
     2401 aggatattat gagataccta aagagatgca ttcgtatgat tgggattctc tcattgaaaa
     2461 aataaagaaa aatggaataa gaaattcgtg gacatctacc atagccccga ctggaacatt
     2521 gtcgatgata gctgacactt caaatggagt agagcctata tttgctcttg tttttgaaaa
     2581 gcgggttaca gttggaagat ttttctacag taacagggtc ttcgaaaatc tactaaaaga
     2641 gaagggtctt tatagtgatg aaattctgac caagattgcc aataattatg gttctgtaag
     2701 aggattgagt gaaattccag aatggataca aaacatattc gttacagcaa tcgatattca
     2761 ttggactgac catttgatgg ctcaggccat atggcaaaaa tggattagta atgcaattgc
     2821 caaaactatc aatatgccag cagatgttaa tgcagaggat gtaagggcct cctacctatt
     2881 gtcgcatgaa ctgggattaa aaggagttac agtctatagg gatggctcaa gacacgaaca
     2941 ggttcttcat ataactggga atgacaagaa ggaaaggaac tttattgtta gacccagtgc
     3001 ccatgttgct gactacatac gatcaaatat taaacaaaac tatgtcagaa cacagattga
     3061 aaagattttc aaagagtcag aggcaatcga tgagttatat atccacccta cgaccgaagt
     3121 gaagaagaca atatcatcca tcgcaacaaa tgaattttgc gaagatgaag cttgtccatc
     3181 ctgtaaagcg agattaatta ttactgaggg ctgtaatatg tgtattgagt gtggtttcag
     3241 tagctgcggc tcaggatgag tgctaaaagc actcctttgt tcttccccct agaaacatac
     3301 ataatttttt gatgcacatg aattcagtac gcccttaagt agtcgagtat tgcatatagt
     3361 tgacagatcc atttgatggc tcttaagatg tgtatagtga gtgttagcga tgtgtggggt
     3421 tatcccaata agttcatatg cactgtgctg ggagttttaa tgattgggga tttacaaata
     3481 tgatgtctac agaagtccaa atattggatt gttcgtaaaa tcaaacaatt caatattatc
     3541 tgttccattt ggctttgcag aaacaaaggc caagaaactc agggattatc tagatgtaga
     3601 caaaatgttt tatgcttctg tatcaggaac taggttaatt ggtcctctaa ctgtgatgaa
     3661 taataacggc atcatcctcc cttccacagc ttctgaagag gaattgcaac tttttaaaca
     3721 agaaagcaaa ttgaatgtag accgcttgaa ttccaagttc acggcagtcg gaaatttgat
     3781 ttcggcgaat gacaatggtg cgcttgtatc cagcttgatt aaagcagaaa ctcatcaaca
     3841 gataagggat attctagggg ttcaagttga tactttgtcg atagcaggat ttgtgcaaac
     3901 aggagctatg gtcgttgcta caaatctggg agctgctgtc catccgaatg caagtgagga
     3961 agaagttcgc aagatctctg aaatactaaa ggttgaagtt gaacctgcga ctatcaatgg
     4021 cggaatccca tacctttcat cagggatcat agccaattca aattctgtag tagtaggaag
     4081 tctgactaca ggtccgga
//
LOCUS       DATLQL010000266         1050 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_242187, whole genome shotgun sequence.
ACCESSION   DATLQL010000266 DATLQL010000000
VERSION     DATLQL010000266.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1050)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1050)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1050
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_242187"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            307..>1050
                     /locus_tag="VNB68_02795"
     CDS             307..>1050
                     /locus_tag="VNB68_02795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052855 - ADP-dependent NAD(P)H-hydrate
                     dehydratase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-hydrate dehydratase"
                     /protein_id="HVD36311.1"
                     /translation="MSNKISLDPKLVQDLVVPRIATSKKGDNGIVLVVGGNRIYHGAP
                     LLASLAALRSGTDLVYTAVPRSNIVATRSFSPNIIALPLPDDKLTVGSSNRLLAVIPK
                     RPDSAAIGMGMTIAKPAALLTIIKGLLARNSKLVLDASALIPSMLDEISGTETIITPH
                     IGEYKRIFGENLPDSEVERISNIQKCAKQYRIVILLKGWIDIISDGERVGINRTHNCA
                     MTVGGTGDILTGIVAGLLTKVKPFEASLLG"
BASE COUNT          338 a          200 c          203 g          309 t
ORIGIN      
        1 ctgaatcgtt agtgtataga ttcagctgca tatccttccg atgctttacc aacaacaatc
       61 gtaataataa tatctaaaat cggttaggga gctggattac gaaaccaaat aattaataac
      121 gccagctcta acactattag aatctacagt catttttcat tttttctgtc attggatagc
      181 gatgataaat tatatgctat gtaacgaagt aaatatcgaa atctactaca gcctaggaag
      241 gtaaaaagtc gccatacata ttgaaaaggt ttatgcctat cgatataggc gactataact
      301 atcgctttgt ccaataaaat ctctttagac ccaaaactag tacaagatct cgttgttcct
      361 cggattgcaa cttctaaaaa aggtgataat ggtatagtac tagttgttgg aggaaaccga
      421 atatatcatg gtgcgcccct tctagcctca ctagctgcac taagatctgg tactgatctt
      481 gtgtacacag cagttccccg gtctaatatt gtcgccacta gatctttttc tccaaatatt
      541 atagctctgc ctctacctga cgacaagtta acagttggct cctccaacag acttttagcg
      601 gtaattccga agagacctga tagtgctgcg atagggatgg gcatgacaat agcaaaacct
      661 gcagcattgt tgacaataat taaaggtcta ttagctcgca actcaaaact tgtcttggat
      721 gcttctgccc taattccaag tatgcttgat gaaatttcag ggactgaaac aattatcact
      781 ccccatattg gcgaatacaa acgaattttt ggagagaatt tacctgactc agaggtagaa
      841 cgaatttcaa atatacagaa atgtgccaag caatatcgta ttgtaatatt attaaaagga
      901 tggatcgata taatttctga tggagaacga gttgggataa atagaacgca caactgtgct
      961 atgacagtag gtggaacagg cgacatatta actggaatag tagctggatt gcttactaaa
     1021 gtgaaacctt ttgaagcttc gcttttggga
//
LOCUS       DATLQL010000267         1410 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_421921, whole genome shotgun sequence.
ACCESSION   DATLQL010000267 DATLQL010000000
VERSION     DATLQL010000267.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1410)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1410)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1410
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_421921"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..904)
                     /locus_tag="VNB68_02800"
     CDS             complement(<1..904)
                     /locus_tag="VNB68_02800"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HVD36312.1"
                     /translation="MKVQLQKKQVKFITFAPYLSAGFAFVIGAVILSLSGVDPITAYG
                     VMLKGAFGTIRGIADTLVKTTSLLLTGLAVALAFKCRIWNIGAEGQLYMGALGAALAG
                     ISVIGVVPIIGVAFALVTGFIFGASFGLVPAVLKVKLGVNEIIVTVLLNFVALLFISY
                     LLHGPIKGPGFNPYSPEIFPQSQLPIILPHTRLHAGIIIAALATIGMYILLSKTKIGF
                     EIKSVGANIKAARYAGMNVSKSILVVMGISGGLAGLAGAILVSGVQHYLIEGISPGYG
                     FIAVIVALLGRQHPVGVAIVAFFFA"
     gene            complement(930..>1410)
                     /locus_tag="VNB68_02805"
     CDS             complement(930..>1410)
                     /locus_tag="VNB68_02805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="heme ABC transporter ATP-binding protein"
                     /protein_id="HVD36313.1"
                     /translation="LEYPIAENLVLDRWYAEPYSGKLFLREHEMKEFAEKIISDFDIK
                     ITGLNAPVRSMSGGNLQKIVLGRELSRKPKVLVVHNPTRGLDIGATEYIHRQLIKQRD
                     NGVGILLLSLDLDEILSISNRIGVIYEGKIVTIVEREKADVDQIGLLMGGKAAKPNL"
BASE COUNT          442 a          321 c          227 g          420 t
ORIGIN      
        1 cagcaaagaa aaatgcgaca atcgctacac ctacaggatg ttgtctacct agcaatgcta
       61 ctattactgc tataaaacca taccctggcg aaatcccttc aatcaaatag tgttgtacac
      121 ctgagacaag tattgcacca gctaatccag caagcccgcc actaattccc ataactacta
      181 atatgctctt agacacattc atgcccgcat agcgagcagc tttgatattt gctccaacac
      241 tcttaatctc gaatccaatt ttagtttttg ataaaagtat gtacattcca atagttgcta
      301 aggcagcgat aattattccc gcatgtagac gagtgtgtgg tagtatgatt ggcagctgtg
      361 attgaggaaa aatttcagga ctgtacgggt tgaagccagg cccctttata gggccatgta
      421 ataaataact aatgaaaagg agagcaacaa aatttaataa aacagtaacg attatctcat
      481 tgactccgag cttgacttta agtacagctg gtaccaatcc aaaagacgct ccaaaaataa
      541 atcctgtaac taaagcaaaa gcaactccta ttataggcac tacaccgatc acagaaatgc
      601 ctgccaaagc tgcgccaagc gcacccatgt aaagttgtcc ttctgcgcct atattccata
      661 tcctgcactt aaatgctaat gccactgcca atcctgtcag aagcaacgaa gtagttttaa
      721 caagtgtatc agctatacct cggatagttc caaaagctcc ttttaacata actccataag
      781 cagttattgg atcaacacca gacaaagaaa gtattaccgc acctattaca aaagcgaagc
      841 cagcagacaa gtatggggca aatgttatga atttcacttg ctttttctga agttggactt
      901 tcatttttaa gctgttcact cctttattat tacaagttcg gcttggctgc tttgccaccc
      961 attaaaagac ctatctggtc aacatcggcc ttttctcttt caacaattgt aactatttta
     1021 ccttcatata ttacacctat tctattagaa atggagagga tttcatctag atccaaggac
     1081 agcaataaaa ttcctactcc attatctctt tgtttaatta actgtctgtg gatatactct
     1141 gtagcgccta tatctaaccc tctagtagga ttgtggacaa ccaagacttt aggttttcta
     1201 gatagctctc tgcccagaac aattttttgt aaattgcccc cagacattga tctcaccgga
     1261 gcatttaatc ctgttatttt tatatcaaaa tctgagatta tcttttctgc aaactctttc
     1321 atttcatgtt ccctcaaaaa taattttcct gagtaaggtt cagcgtacca tctgtcaagt
     1381 accaaatttt ctgcaatagg atattccaaa
//
LOCUS       DATLQL010000268         1617 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2549314, whole genome shotgun sequence.
ACCESSION   DATLQL010000268 DATLQL010000000
VERSION     DATLQL010000268.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1617)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1617)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1617
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2549314"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            171..282
                     /locus_tag="VNB68_02810"
     tRNA            join(171..210,238..282)
                     /locus_tag="VNB68_02810"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:207..209,aa:Leu,seq:caa)
     gene            complement(421..>1617)
                     /locus_tag="VNB68_02815"
     CDS             complement(421..>1617)
                     /locus_tag="VNB68_02815"
                     /inference="COORDINATES: protein motif:HMM:NF013188.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HVD36314.1"
                     /translation="QTLGSNPNYLVQDFAVIMIVAAIMLVVTFKLKQPMVIGYLLAGM
                     VIGPYTPPFRLIHDINALNVLAELGIIMLMFVIGTEFPIAKLRSVGRTSIIVALSESL
                     GTLTLVFFVAQTLGFSLYDSMFLALAMSVTSTVVTVRVLEELNMLREKSTVLLLGISI
                     VEDIVVITALGILQSIAATSNVSVVQISVSLAIVAGFIGGVLVLGSKFLPLIIDKVAK
                     TNDYSVLLIVILGLAFGLSFISIALGLSVVIGAFLAGVLVAESSSAGIARVITVPLRD
                     VFAALFFVSVGALMDVSKIPIFIIPALVLIVTSFVSKLLIIYVILVRSGYSSTTALRT
                     GLGMSSARGELSLVVAKGGQDVGAISSFIFPILGVVTVVTTFITPYILRLGSRLKITS
                     KGLEDT"
BASE COUNT          533 a          354 c          299 g          431 t
ORIGIN      
        1 cctgcccgca gttcgtttat cttcatgttc ccaatgtttt gttattgcct ataataaaaa
       61 ttctacgatg caataacatg atgtattaat aaacatattt tacttactag cttccaggag
      121 ctttggaaag agataggatc aaataatgtc ctgaattaca agcatattga ggagggatag
      181 cgaagcatgg ccaaccgcgc aggactcaag atgaatatta tcagcgtgac atgtgaaatc
      241 ccgtccctaa ggggttcgtg ggttcaaatc ccactccctc cactctaaat tcggtcagat
      301 atccaagaaa aattaacatc agcaatcttt aggaagaacc tggtacacta acgccccaaa
      361 ggcacaagtt tattgccaga ctcatgagta ttcaacttcc cagaaatttt tcttataaat
      421 ttaagtatct tccaggccct ttgaagttat tttcaatcta ctaccaagcc tcaagatata
      481 aggtgttatg aaagtggtta ctactgttac tacacccagt attggaaaga tgaatgacga
      541 aatagcacca acgtcttggc cgcctttggc tacaaccagt gatagttcac ctctcgcaga
      601 agacattcct agtccggtcc gcaacgccgt agtactactg taccctgatc taacgagtat
      661 aacgtaaatt atcaacaact ttgatacgaa ggatgttaca atgagaacga gagcgggaat
      721 tataaatatt gggattttgg agacgtccat taacgcacct acagatacaa aaaataacgc
      781 tgcgaaaaca tcccgtagtg gaactgttat cacgcgggca ataccggcgc tgctagattc
      841 ggcgaccagg acaccagcta agaatgcccc tattacaaca gataatccaa gtgcaatact
      901 gatgaatgat aatccaaatg ccagtccgag aattactatt aagagaactg aatagtcatt
      961 ggtcttagct accttatcaa tgataagtgg caagaattta gaacctagga caagaactcc
     1021 ccctatgaat cctgccacga ttgccaatga cactgatatc tgtacaacag agacgttact
     1081 agttgccgct atagattgca aaatacccaa ggcagtaatc acgacaatat cttctactat
     1141 tgatatcccc aacaacagta cggtagattt ttctctcaac atgttaagct cttcaagtac
     1201 tcgaactgtc acaaccgtac ttgttacaga catggctaat gctagaaaca tagagtcata
     1261 cagtgaaaac ccaagtgtct gggctacaaa aaatactaat gtaagagttc ctagtgattc
     1321 tgagagcgcg acaataatcg aagtccttcc aactgatctg agttttgcga ttggaaattc
     1381 tgtccctatg acaaacatta gcatgattat ccctaattct gcgaggacgt tcaaagcatt
     1441 aatatcatga attaatctga atggcggagt ataaggacct attaccatcc ctgcaaggag
     1501 atatcctata accatcggct gtttcaactt gaaagtaaca accaacatta tagcagcaac
     1561 tatcataatc actgcgaaat cttgaactaa atagttagga ttggaaccta atgtctg
//
LOCUS       DATLQL010000269         1257 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_65972, whole genome shotgun sequence.
ACCESSION   DATLQL010000269 DATLQL010000000
VERSION     DATLQL010000269.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1257)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1257)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1257
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_65972"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(94..774)
                     /locus_tag="VNB68_02820"
     CDS             complement(94..774)
                     /locus_tag="VNB68_02820"
                     /inference="COORDINATES: protein motif:HMM:NF012383.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase family protein"
                     /protein_id="HVD36315.1"
                     /translation="MSSIKDGSILKFKDREKAAHTLASVLKDSLKGASREEVTVIGIP
                     RGGVIMAQVISQKIAAPSFDIVISRKLSAPHNVELGIGATMQDSTLYLNDYVVNALKV
                     TPEYIENEKQKQIEEIKRRESLYRSSAKRYEIKGRIIVLVDDGAATGATLVAAARWIR
                     KQEPKKLIIAIPVVPRETLELLKKEADHVEAVIIPITTNFRSVGQFYEDFSPVSDEDV
                     MKIMKDQK"
BASE COUNT          364 a          263 c          213 g          417 t
ORIGIN      
        1 cgtcaaaatc agaatagttc ttctttcaat agggttagag ttattccact gatgctgtga
       61 atagcaagaa aatgaatatc tgggaataga ttatcatttc tgatccttca ttatcttcat
      121 tacatcctca tcactaactg gggaaaaatc ttcatagaat tgaccaaccg atctaaaatt
      181 cgttgtgatt gggataatca ctgcttctac atgatccgct tctttcttca atagttccag
      241 agtttccctt gggacaacag gaattgctat tatcaatttc ttaggttctt gtttccttat
      301 ccatcttgct gctgcgacca aggtagcacc ggttgcagct ccgtcatcaa caagaacaat
      361 aatccttcct ttaatttcat acctcttggc actgcttctg tataaagatt ctcgtcgctt
      421 gatctcttca atctgttttt gtttctcgtt ttctatatat tcaggggtta ccttcagtgc
      481 atttactaca taatcattca agtaaagcgt actgtcttgc atagtcgcac ctatccctag
      541 ttctacattg tgcggtgcag acaattttcg tgatatgact atatcaaatg aaggagctgc
      601 tattttctgg ctgattactt gggccattat tacacctcca cggggaattc caatcacagt
      661 tacctcctct cttgaagcgc cttttagaga atccttcaga actgaggcga gagtatgtgc
      721 cgctttttct ctgtccttaa attttagaat agaaccgtcc ttgatcgatg acaagatatc
      781 tgacacctta gagaacaata gtatttttcc taatctctgt gctataagta tagcggtatc
      841 ccaaatacaa gttaaatact atggtcattt tttactctat aatccttagt acagtaacat
      901 attaatatat aaggcacgga gtcttatttt cccttgagtt gagttgcagc caaattcgat
      961 aaagtacaaa gtccactata acccatccat gtatgatcat aaaaccggca ggtacacaaa
     1021 tggggagaag acttttgaaa ctttcaatca ggcaagagct caccaatgga aatgtgaaaa
     1081 gtgtgaaagg actttttcaa aatttcctga cctcaaaaaa cacaaaaatg acgaccatgc
     1141 ctactgattt taattgctga ttgtaggtca agttcattta caatcaaact gaggtttgca
     1201 aaatgcaagc tgcgttaaat ctttcctgtc atttatttcg tacgtgttac cgcaaat
//
LOCUS       DATLQL010000270         1074 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2196398, whole genome shotgun sequence.
ACCESSION   DATLQL010000270 DATLQL010000000
VERSION     DATLQL010000270.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1074)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1074)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1074
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2196398"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            237..554
                     /locus_tag="VNB68_02825"
     CDS             237..554
                     /locus_tag="VNB68_02825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36316.1"
                     /translation="MTPTNKNVMKVIIEEPHYSFKFFVVQEQTIVLNSTSDRRKLAVK
                     DGEGETLSNTANPRYIIISACGYGNMGDDAIMLGTAKYLIQGRKQETCSFFHMPHRKH
                     SSY"
     gene            620..>1074
                     /locus_tag="VNB68_02830"
     CDS             620..>1074
                     /locus_tag="VNB68_02830"
                     /inference="COORDINATES: protein motif:HMM:NF016145.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide pyruvyl transferase family
                     protein"
                     /protein_id="HVD36317.1"
                     /translation="MSSTTRRKSIMIGGGTLITNRTFFTLYYLIPAILFKLLFSRSSD
                     VYFFGVAAEERIKRPLLKFMLSLVLRHSIKKALVRDNFTEGLLKHFGNSSSIKVKTIG
                     DPALFLKEWEDGNGGNKEGDGHSTFFDHTAKIFVSARDLDLYSSDYHAR"
BASE COUNT          332 a          196 c          230 g          316 t
ORIGIN      
        1 tcgccgttga taaaattgac ctcgcttgcc actcttgact gatagcgtgc ttcgacatag
       61 gtagcactct ttgaagacga aatcaataac ctgagactgt cagctacttg tgcaccattg
      121 cgcatcattt tcatttggag aaagatatag gtatatctgt atctcttctt agatggttat
      181 aatacccaaa tcgctataat tggattttga tttggcaaca tgcaagattg tttcgtttga
      241 caccgaccaa caaaaatgtt atgaaggtta tcatagaaga acctcattat tcattcaaat
      301 tcttcgtggt acaggaacaa accatcgtac taaatagcac atccgataga agaaaattgg
      361 ccgtgaaaga tggagagggg gagaccttaa gtaataccgc gaatcccagg tacataataa
      421 tctccgcgtg tggttatggc aatatgggtg atgatgcgat aatgttggga acagcaaaat
      481 atttgataca aggcagaaag caggagactt gttcattttt tcatatgccc cacaggaaac
      541 acagcagtta ttagaaaaga cgaggttgac ctcgctcgct acaatacgct gtgggcgttt
      601 tgtaagtttg ataaaggctt tgtcatccac aactagaagg aaaagcataa tgataggtgg
      661 aggcactctg ataactaacc gtactttctt caccttgtac tatctaattc ctgctattct
      721 tttcaagcta ttgttctcca gatcttctga tgtctatttc tttggagtgg cggctgaaga
      781 aaggataaag cgaccattac tgaagttcat gttatcatta gttcttcggc attcgataaa
      841 aaaagcactt gtacgagaca atttcaccga aggtttattg aaacattttg gaaatagtag
      901 tagcataaaa gtcaagacaa ttggtgatcc tgcgcttttc ctcaaagaat gggaggacgg
      961 taatggaggt aataaagagg gtgacggcca tagcactttt tttgatcata cagcgaaaat
     1021 ctttgttagc gctagagatc tagatctata ttcgtcagat tatcatgcaa gatg
//
LOCUS       DATLQL010000271         1246 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_244163, whole genome shotgun sequence.
ACCESSION   DATLQL010000271 DATLQL010000000
VERSION     DATLQL010000271.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1246)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1246)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1246
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_244163"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(423..1010)
                     /locus_tag="VNB68_02835"
     CDS             complement(423..1010)
                     /locus_tag="VNB68_02835"
                     /inference="COORDINATES: protein motif:HMM:NF025825.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HVD36318.1"
                     /translation="MASDINRAEEGLTSSFITDITDKKELEEIQRIANRVVKDEKVMF
                     VARQSRFKPGGAKGTPATLFVTSQRLIFRNPSMMGMREHFSSVNYDKISSLDIEKGIF
                     SSTLKIRAEGFAGDVDAIDKEKAEKILLYIQEKMDEATTSAMHSQPDTHTSNPQLSAA
                     DELTKIARLKEQGILSEAEFNQMKQEILRKKLELF"
BASE COUNT          324 a          253 c          229 g          440 t
ORIGIN      
        1 aggatgatgt cgacgatgtt cgggcgagca cagagtagag tacaaaggtg actcccgcac
       61 tcgcgaatgc cgctagcgcg gctatcttgc ttccgttatt catattgtat tacaattctc
      121 aaaagagaga acgggaataa aatacttgcg ccttgaaatt tcgtgttaca gtatgtgttt
      181 gttacatcta gacttaggct ctgtattctt ctcctcgtcc tcctcctcgt cgcctctctc
      241 atgttgtggt gatggtgcag tattttttca atattttcat tcagtctccc tgtcaaacta
      301 ctaccataat aattcagact ttttaagtaa gttaacaaat gaaagtcgtc aggttacaga
      361 acttaaattt atagaatgct taaggagctg ctggaaactt tctgaaatta cctatatatc
      421 acctagaaca attcgagttt ttttctcaaa atttcctgtt tcatttgatt aaattctgct
      481 tctgatagaa ttccttgctc tttgagtctg gcaattttgg ttagctcatc tgcagcagat
      541 aattgcggat tcgatgtgtg ggtatcaggt tggctatgca ttgcactagt tgttgcctca
      601 tccatctttt cctgaatgta tagcaatatc ttttccgctt tctctttgtc tatggcatct
      661 acatcacctg caaatccttc agctctgatt ttcagcgttg acgaaaaaat tcccttttct
      721 atatccaagg aagaaatttt atcataattg accgacgaaa aatgttctcg catgcccatc
      781 attgagggat ttctaaaaat tagacgttgt gaagtcacaa agagtgtagc gggcgtgcct
      841 ttagccccac caggtttgaa tcgagattgc cttgcaacaa acattacttt ttcatcctta
      901 actaccctat ttgctatcct ttgtatttct tctaactcct tcttatccgt aatatcagta
      961 ataaatgagg aggtcaatcc ttcctccgcc ctgttaatat cagatgccat agttagagga
     1021 aatccttcat tatttattta cttttccagg tttctttttg aagttattcg tcagaaaagt
     1081 aaaaatatgc tggagatttg tagtttagtt cctcattcca tttgttatcc ttcttgtaag
     1141 gaaatgttgc gagcgggtgg aaaagataag gtcatttcta ttctcttgag atcaatactg
     1201 ggtaggagag gatgatgact gcatctcatc cttcattctg attcat
//
LOCUS       DATLQL010000272         1780 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1309114, whole genome shotgun sequence.
ACCESSION   DATLQL010000272 DATLQL010000000
VERSION     DATLQL010000272.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1780)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1780)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1780
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1309114"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..186
                     /locus_tag="VNB68_02840"
     CDS             <1..186
                     /locus_tag="VNB68_02840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36319.1"
                     /translation="RQVWKTGRRNPPRKIRVKIIKDEDGTAVISLYEVAKTESEESKS
                     EEEEKNSDATSSDTKQI"
     gene            complement(1160..>1780)
                     /locus_tag="VNB68_02845"
     CDS             complement(1160..>1780)
                     /locus_tag="VNB68_02845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36320.1"
                     /translation="IISFVIMPFRYEKDRIFHAGVSLRRIRDSSDATIIVDNDALLHN
                     NPELSPSDCYIITNNAVLDVINSLSQDYISPDFNLLCASKQGQSTVESSLKDSIGILF
                     EDAKPDSVRKSVLYIAGSQNVPIGTLHSVVNTLGALFGAERSAEIAVSLSDSDKLGVN
                     LMASIQEDTRFDRYDPLGEIIPKDNVLDWDELESSPDIELMISNLE"
BASE COUNT          544 a          348 c          342 g          546 t
ORIGIN      
        1 agacaagtat ggaagacagg ccgtaggaat cctccaagga aaattcgggt aaaaatcatt
       61 aaagatgaag atggaactgc cgtaatatct ctctatgaag tggccaaaac ggaatctgag
      121 gaaagcaaat cggaagagga agaaaaaaat tcggacgcaa cttcaagcga cacgaagcaa
      181 atttaataaa agaccaaaca caaacgcaaa tgacatgatc gaacctatgt gtgcctttta
      241 tttactggac tcgctggcaa atagcaggat aatttattga cattattcta tgaggattta
      301 atggagttgg cctataaatg ctgcagaatt ccttgtaaat cgaaagacaa gggctcacct
      361 taacattttt tatcatattt tggcattttg caagcattta acaaaccgtg cgatgtgatt
      421 tgggaaatat ctcagaatgt gctctatgtg acagcatatt gaaggcccta aaaataccat
      481 ggtagcgatc tatccttcca acttatccat cttctagctc ccattggctg gattgacttt
      541 tacgatggaa gtttttagta gtagaaaggc aggtttactg taagatgtgg ccctaaccca
      601 atcaactggc tgaatccttt tccgtggact cagaatatat gatacataat tacctcacaa
      661 atcctatttg acctatttga cgagctattt tgatggtgtc tgaagtacat tgttatatgc
      721 tattaccgga atcaggtaat agaggatttc aaaatttgcc atcagtgctt tcagaaatgt
      781 ctcgctcaca cttcacagcg caatggctcc taatgaatca ttattattat ttctgttatc
      841 tcttgaatat ctgtcctata ccttcaatgc tccattgtgc ttataatatt cagccggtcc
      901 tctcattttt ggacgtagag tagagtaata tgggaattta ccattcgtat tggcacttaa
      961 tgtgattgtt tgactttgta gtaatccaaa tccttcgtgt gaccattaaa ggtatccaca
     1021 tttagattat gtaatgaatg tgtctctgaa tgctcaatta tcaaacgaaa tgttactgct
     1081 atcttcccct ttgtcaggaa tataatcggg ccattacatc ccattcctat tcctagcagg
     1141 gcaatatgag ttcatattcc tattcaagat ttgaaatcat taattctata tcgggcgaag
     1201 attccaactc gtcccagtct aaaacgttat ccttaggaat tatttcgccc aggggatcat
     1261 acctatcaaa tcttgtgtcc tcctgaatag aggccataag gttaactccc agcttgtcgg
     1321 aatccgaaag tgaaactgcg atttctgccg aacgctctgc tccaaataat gcacctaatg
     1381 tattcacaac agaatgaaga gttccaatcg gaacgttttg gctacccgca atatagagaa
     1441 ctgatttcct tacagaatca ggttttgcat cttcaaacaa gatgcctatt gagtctttca
     1501 gagatgattc taccgtgctt tggccttgct tactggcgca taataagttg aaatctggac
     1561 tgatatagtc ctgagaaaga gaatttatta catccagaac cgcattatta gtaataatat
     1621 agcagtcact aggtgataac tcgggattat tatggagaag agcgtcattg tcgacgatta
     1681 tagtcgcatc agatgaatca cgtattctcc ttagggaaac tccggcgtgg aatatgcggt
     1741 ctttttcgta cctgaaaggc attattacaa atgatattat
//
LOCUS       DATLQL010000273         1124 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_778646, whole genome shotgun sequence.
ACCESSION   DATLQL010000273 DATLQL010000000
VERSION     DATLQL010000273.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1124)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1124)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1124
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_778646"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..207)
                     /locus_tag="VNB68_02850"
     CDS             complement(<1..207)
                     /locus_tag="VNB68_02850"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HVD36321.1"
                     /translation="MIPVEANVSLHVEDTGGNGKPIFFVHGWPLDLKMFEYQFTTLKE
                     NGYRCIGLDLRGFGMSAKPWQDYNY"
     gene            597..848
                     /locus_tag="VNB68_02855"
     CDS             597..848
                     /locus_tag="VNB68_02855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HVD36322.1"
                     /translation="MRYRSKTDIISKILDTANGGGATKTKIMYQAFLSFTQVKVYARA
                     LTENNLLNYDAYTQTFKTTEKGLRFLDTYNQMDDLIKIA"
BASE COUNT          382 a          218 c          212 g          312 t
ORIGIN      
        1 atagttataa tcttgccatg gctttgcgga cataccaaag ccccgaagat ccaagccaat
       61 gcaccgatag ccgttctctt tgagagttgt aaattgatat tcaaacatct tgaggtctag
      121 tggccatcca tgaacaaaaa aaatgggctt gccattgccg cctgtatctt cgacatggag
      181 agatacgttg gcctctactg gtatcatagc cataactgaa tacaacaagt gccatattgc
      241 ttatagcaaa ttacaaagat ttttggatct tccagttctg ctataatacc ctgatttgac
      301 ttttcatcaa tcatgaccac gataaaggac tcaatccaag acaaattgac ccaataatta
      361 cactcataca taccctcata cactcacata ctattatcaa gactatgcac tcagagacgc
      421 aaacaaacat caacctcacg aaggctgttg aaaagagtaa tagaataata gtagtagcga
      481 gaacaaaaag tttgtagtcc ctgattgttg ttgtttgtat gaacttctct tgacttttca
      541 catctttcat tagaaggcta tttatgatga tcctcatcgc ccattgagca aatagcatga
      601 gatacagaag taagacggac ataatcagta agattctaga tactgcaaat ggcggcggcg
      661 ctacaaagac caagataatg tatcaggcat ttcttagctt tacacaagtg aaagtgtatg
      721 cgagggctct aactgaaaat aacttgctta actatgatgc atatactcag acattcaaga
      781 ccactgaaaa gggtcttagg tttcttgaca cctacaatca gatggatgat ttgataaaga
      841 tagcttaaga agaagaacaa caacaagtcc agctgtagta gaaataagaa gtcagtaatc
      901 cttaagatac ctgaataatc tttgtgtaat attgaataac tctatcataa agataataat
      961 tttcttgtat aacattccat cgtaatgcta tttaggtcat gtgtcgcgtc gtgggaccca
     1021 cgtatgagaa acagaggcag aatcgactta atggccgaga ttctacatgc agcaaatgag
     1081 agtgatggtg ctggaaggac taagataatg tatagagcat ttct
//
LOCUS       DATLQL010000274         1330 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_778912, whole genome shotgun sequence.
ACCESSION   DATLQL010000274 DATLQL010000000
VERSION     DATLQL010000274.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1330)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1330)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1330
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_778912"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..618
                     /locus_tag="VNB68_02860"
     CDS             <1..618
                     /locus_tag="VNB68_02860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase"
                     /protein_id="HVD36323.1"
                     /translation="ESIPGGTTTGLGVLTGLGIDANYKMSSSMPVNPHDLKIHVVKQA
                     IKNQKIPDLQDPFKIVSLLGDPMIPAVAGIATGVMQSGSKLMLAGGTQMAAVLAFMHS
                     MKLSLKNICLGTTSYVTDDKNSDLEFLAKTICADVPIMSVNPGLDRSTKNGLIMYDKG
                     VVKEGVGSGGALITMLLKSNGAINKDTFLRNIEKEYETNIEKLMV"
     gene            complement(653..>1330)
                     /locus_tag="VNB68_02865"
     CDS             complement(653..>1330)
                     /locus_tag="VNB68_02865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0097367 - carbohydrate derivative binding
                     [Evidence IEA];
                     GO_process: GO:1901135 - carbohydrate derivative metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HVD36324.1"
                     /translation="IVNIPTSSLARLSDSYLEVNCGPEIGVAATKSFTSQIALLYYVA
                     DIIGRKSNGISDSKEILTKSVSEVLELDSQIERVANQIKDSKDIYILGRSLHFPVSLE
                     GALKIKELSYIHAEGMAAGELKHGPLALIDNNSIVIVIHPNDSTYTDTLSNIHTIKSR
                     GAKIVGISNKRNDMYDYQIIIPTISEFLYPLIEVIPLQLLAYYLSICNNANPDYPRNL
                     AKSVTVK"
BASE COUNT          421 a          227 c          275 g          407 t
ORIGIN      
        1 gaaagtattc caggtggaac aactactgga cttggtgtat tgacaggtct tggaattgac
       61 gcaaattaca aaatgagcag tagtatgcca gtaaacccac atgacttaaa gatacatgtt
      121 gtaaagcaag caataaagaa tcaaaaaatt ccagatttgc aagatccgtt caaaatagta
      181 tctttattag gcgacccgat gataccggca gtagctggaa ttgcaaccgg tgtaatgcaa
      241 tctggttcca agctgatgct tgctggggga acgcagatgg ctgcagtcct tgcgttcatg
      301 cactccatga agttgtcatt aaagaacatt tgcttgggaa caacttcata tgtcactgac
      361 gataaaaatt cagacctgga atttctcgca aaaacaattt gtgcagatgt tcccataatg
      421 tcagtaaatc caggtttaga taggtcaacc aaaaatggcc taataatgta tgacaagggt
      481 gttgtaaagg aaggagtggg gtctggaggt gccctaatca ctatgctatt gaaatctaat
      541 ggagctatta acaaggatac ctttttgaga aatattgaaa aagagtatga aacaaatatt
      601 gaaaaactta tggtctgaaa gtatttgatt tcacagtgga ttatggaact gtttatttta
      661 cagtgacaga ttttgcaagg ttacgcggat aatcaggatt tgcattgttg catattgaaa
      721 gatagtaagc caaaagctgt agtggaataa cttcgattag aggatataga aactcactta
      781 tcgtagggat gataatttgg tagtcataca tatcgttcct cttgtttgat attccaacaa
      841 tttttgcacc tcttgatttt atagtatgaa tgtttgatag agtgtctgta taagtagaat
      901 cattgggatg tatgactatg acaatgctgt tattatctat aagtgctaaa ggtccatgct
      961 ttaattctcc tgcagccata ccttcggcat gtatgtaaga gagctccttg atttttaatg
     1021 ctccttccaa gctgacagga aaatgtaaag atcggcccaa aatgtatatg tcctttgaat
     1081 cttttatctg atttgcgacc ctttcaatct gtgaatctaa ttcaagaacc tcactaacag
     1141 acttggtcaa aatctcttta ctgtcagata tgccgtttga tttccgacca attatgtctg
     1201 caacgtaata caataaagca atttgacttg taaaactctt ggttgccgca actcctattt
     1261 caggaccgca gtttacttca agataagaat cactcagtct cgcaagtgag gaggtgggga
     1321 tattaactat
//
LOCUS       DATLQL010000275         2584 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1840824, whole genome shotgun sequence.
ACCESSION   DATLQL010000275 DATLQL010000000
VERSION     DATLQL010000275.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2584)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2584)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2584
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1840824"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..493
                     /locus_tag="VNB68_02870"
     CDS             <1..493
                     /locus_tag="VNB68_02870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HVD36325.1"
                     /translation="GELGSDVIYTKVGSVEVSREMVKRKAIIGLEENGGFMYGVLNEV
                     RDGALTTALILDMLASEDNSLSGMFSTLPVVHQHKTKFRCSNHKLVEEVIQCCLHHGN
                     PVRVETLDGIKIWIDDETWIMIRPSGTEPLLRMYAESTDRDLIDSKVKEYTRLINEIL
                     EKS"
     gene            579..962
                     /gene="rpl7ae"
                     /locus_tag="VNB68_02875"
     CDS             579..962
                     /gene="rpl7ae"
                     /locus_tag="VNB68_02875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020266993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7Ae"
                     /protein_id="HVD36326.1"
                     /translation="MSKEYYVKFETPKDLVNEVYEAVRLARQSGKVRKGTNETTKAIE
                     RGVSKLVVIAEDVQPPEVVAHLPILCEERNAAYIFVPSKQQLGESLGIDVGSAAATIV
                     DAGDAQHIVDQVINSISNLKNKKEQ"
     gene            970..1185
                     /locus_tag="VNB68_02880"
     CDS             970..1185
                     /locus_tag="VNB68_02880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S28e"
                     /protein_id="HVD36327.1"
                     /translation="MSKAVEDKVTPAEVIQIVGRTGIAGEVIQVRVKVLEGKDKGRIL
                     TRNVKGSIRVSDILMLRETEREARKIK"
     gene            1210..1422
                     /locus_tag="VNB68_02885"
     CDS             1210..1422
                     /locus_tag="VNB68_02885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24e"
                     /protein_id="HVD36328.1"
                     /translation="MSKLVRSLRSCFFCGRQILAGNGIMLVKNDGAIQWTCSNKCKKN
                     LRKLKRDPRKMKWTDKYVKGGIRVKK"
     gene            1424..1849
                     /gene="ndk"
                     /locus_tag="VNB68_02890"
     CDS             1424..1849
                     /gene="ndk"
                     /locus_tag="VNB68_02890"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004550 - nucleoside diphosphate kinase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HVD36329.1"
                     /translation="MENKNKLQSDEETLIVIKPDGFKRGLTGKIISRFEDKGFQIKKI
                     KSFQFEKMEAEEFYNIHRDKPFFNELVSFITSGMVVACIIEGNNAVATTRLMIGSTKS
                     SEAGAGTVRGDFGLGLTDNIIHASDSAESFIKESKVIFG"
     gene            1850..>2584
                     /locus_tag="VNB68_02895"
     CDS             1850..>2584
                     /locus_tag="VNB68_02895"
                     /inference="COORDINATES: protein motif:HMM:NF012239.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HVD36330.1"
                     /translation="MKIRQPIVVVLGHVDSGKTSLLDQMRGTAVQSREVGGITQHIGA
                     SFFPIEIVKDITGPLYAQLAKSDSPIPGLLVIDTPGHEVFANLRMRGGSAADIAIVVA
                     DVNKGFEVQTVESIEILEKRKVPFVIALNKIDQIPGWNNTKSIFISEQIKAQGGDMIS
                     TLDEKIYTVVGSLSKLGYNSEAFWRIKDFTKEVAIVPVSAAKNIGIPELMAVLVGLAQ
                     QYMTKKLERHEGETKGIVLEVKDELGL"
BASE COUNT          871 a          396 c          624 g          693 t
ORIGIN      
        1 aggagaactt ggatctgacg tgatatatac caaagttgga agtgtggaag tgtcaaggga
       61 aatggtgaag aggaaggcta taattggatt ggaagaaaat ggaggtttta tgtacggagt
      121 actaaatgaa gtaagagatg gagcgctcac aacggcattg attttggaca tgttggcttc
      181 tgaagataat tcgctatcag gaatgttttc tactctaccc gttgttcacc agcataaaac
      241 aaaatttcgt tgttctaacc ataaattagt tgaagaagtc attcaatgtt gtttgcatca
      301 tgggaatcct gtcagagttg agactttaga tggaataaag atctggattg acgatgagac
      361 ctggattatg ataagaccca gcggaaccga accccttctt agaatgtacg cagaatcgac
      421 tgacagagat ctcatagatt ccaaagttaa ggagtatacc agacttatca acgaaatatt
      481 ggaaaagagt taatcagata atatattgac aacgttttta atactcctat tttctacatc
      541 atattcgata agatgatccc gatgggtgat aaatcagatt gagtaaggaa tactatgtca
      601 aattcgaaac gcctaaagac ttagttaatg aagtatacga ggccgttaga cttgcaagac
      661 aaagcggcaa agttcgaaag ggtactaatg agacaacaaa ggcaatagaa agaggagtta
      721 gtaagttggt ggtcattgcg gaagacgtac aacctcccga agtagtagcg catcttccca
      781 ttctttgtga agagagaaac gctgcatata ttttcgtacc aagtaaacag caattggggg
      841 agtcattagg aatagatgtt ggttcagcag cagctactat tgtggatgca ggggatgctc
      901 aacacattgt tgatcaggtc ataaattcta tttctaattt gaagaacaag aaggagcaat
      961 aaataatcta tgagtaaggc tgtggaagat aaagtcacac ctgctgaggt aatccaaatc
     1021 gtgggtcgaa caggcattgc gggtgaggta attcaggttc gtgttaaggt tttagaagga
     1081 aaggataagg gccgtatatt aactagaaat gtaaagggat cgattagagt tagcgatatt
     1141 ctaatgctga gagagacaga aagagaggca cgaaaaatca aataattgtt attggtgtga
     1201 gttagacttt tgagtaaact ggtccgttcg cttcgtagtt gtttcttctg tggcaggcag
     1261 atacttgctg gtaacgggat aatgttggtt aaaaatgatg gggcgataca gtggacctgt
     1321 tcaaataaat gtaaaaagaa tcttcgtaaa ttgaaacgag atccaagaaa gatgaaatgg
     1381 accgacaaat acgtaaaggg cggaattaga gtcaagaaat gaattggaaa ataagaataa
     1441 attgcaatca gatgaagaaa ctctcatcgt tataaaacct gatggcttca agcgaggact
     1501 aactggaaaa attatttcca gatttgaaga taaaggattt caaataaaga agataaaatc
     1561 gttccaattt gaaaaaatgg aagctgaaga attctataat attcatagag acaagccatt
     1621 ctttaatgag ttagtctcat tcataacttc gggaatggtt gtcgcatgta taatagaggg
     1681 aaacaatgca gtcgccacaa caagactaat gattggaagc actaaatctt ctgaagccgg
     1741 tgctggtact gtaaggggag attttggact tggattaacg gacaatataa tacacgcttc
     1801 tgattccgct gaaagcttca taaaagagtc aaaagtcatt tttggttaag tgaagattag
     1861 acagccaata gttgtagtgt tgggtcatgt agactcggga aaaacttctc ttcttgatca
     1921 gatgcgggga acagctgtac agtcaaggga agttggagga ataacacaac acattggggc
     1981 gagttttttt cctatagaaa tagtaaagga cataaccgga ccgctctatg ctcagcttgc
     2041 gaagtcagac tcgcctatcc caggtctgtt ggtgattgat actcccggtc atgaggtctt
     2101 tgccaacctt cgaatgcgtg gtggctctgc agcagacatt gcaattgttg ttgccgacgt
     2161 aaacaaagga tttgaagtac agactgttga gagtatagag atcttagaaa agcgaaaggt
     2221 tccattcgtt attgcactaa acaagattga tcaaatccct ggttggaata atactaaatc
     2281 tatctttatt agtgaacaga taaaggcaca aggaggtgac atgatatcca ccctggatga
     2341 aaaaatttac accgtcgttg gttccttatc gaaattgggt tataattcgg aagcattctg
     2401 gcgtataaag gattttacca aggaggtcgc catagtgccg gttagcgctg caaaaaatat
     2461 tggcattcct gaattaatgg ctgttctagt aggacttgcg cagcaataca tgacaaagaa
     2521 attagagcgt catgaaggtg agacgaaggg catagtgtta gaagtgaaag acgaattagg
     2581 ttta
//
LOCUS       DATLQL010000276         1086 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_244948, whole genome shotgun sequence.
ACCESSION   DATLQL010000276 DATLQL010000000
VERSION     DATLQL010000276.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1086)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1086)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1086
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_244948"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(130..258)
                     /locus_tag="VNB68_02900"
     CDS             complement(130..258)
                     /locus_tag="VNB68_02900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36331.1"
                     /translation="MIEETWLPILDMLKGGKKILLQHAFQWHPSEGISVTEDISEL"
     gene            313..471
                     /locus_tag="VNB68_02905"
     CDS             313..471
                     /locus_tag="VNB68_02905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36332.1"
                     /translation="MALSQIFNALTKDTARENRANPAFGCELTLVTAQESSDIGAAGG
                     LDEKVLRS"
     gene            complement(561..851)
                     /locus_tag="VNB68_02910"
     CDS             complement(561..851)
                     /locus_tag="VNB68_02910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36333.1"
                     /translation="MKKPSLGIRNNNLDEGVVTFGLWLNAENKKSLAIPVIMKEFTEG
                     KRAVLQDNSLQKEVIVNIVEGIPFCNECRSNDCAHVGFAICAEQLTNKSKIE"
BASE COUNT          319 a          212 c          210 g          345 t
ORIGIN      
        1 atgaatagtc tgctggaaat tgagttgaca atttagggat gacatctatc aagatttata
       61 tttttggaag atagattgat ttatgtttgc tcctgcccat aaagacgacg atttaggttt
      121 tgtccgtttt cataattcag aaatatcctc agtgacagag attccttctg aaggatgcca
      181 ttggaaggca tgttgcagca atattttttt tcctcccttc agcatgtcca atattggaag
      241 ccacgtttct tcaatcacac atgttcttat ccgagttcat gtgtaagatc ttttggagca
      301 aagtttgtaa cgatggcgct ttcacaaata tttaatgcat taactaagga cactgcgaga
      361 gagaataggg cgaacccggc atttggatgc gagctaacat tggtaactgc tcaagaaagc
      421 tcagacatag gagccgcagg cggcttggat gaaaaggtac taagaagcta agattcaata
      481 aagatataaa aaaacctagg atcgcatcat agaagacaaa attgggaacc taacgattct
      541 gaaagattca gtccacagcc ttattcgatt ttggacttgt ttgtcaattg ctcagcgcat
      601 attgcaaagc caacatgcgc acaatcattt gatctgcatt cgttgcaaaa tggaattcct
      661 tccacaatat ttacaataac ctctttttgc agactattgt cttgcaatac tgctctttta
      721 ccctcagtga actctttcat tataactgga attgcgagag attttttgtt ctcagcattg
      781 agccacaagc caaaggtaac taccccctca tcaaggttat tattcctgat gcccaaggag
      841 ggtttcttca tatttcttat tcttctctca gacaattctg tggtatcaac tctcagttaa
      901 aaagcgccat actgcttgtt aaagatggcg taagattatt ctaacctctt ggtatattac
      961 agctaaggca agtaataaac gtatgtcttg caatggcttt gagagtaggt gtacctgcga
     1021 gatatttcta tcactcatcc tggttctttt caaggatagg gattaagcct gactttaaat
     1081 tcctat
//
LOCUS       DATLQL010000277         4407 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1665044, whole genome shotgun sequence.
ACCESSION   DATLQL010000277 DATLQL010000000
VERSION     DATLQL010000277.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4407)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4407)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4407
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1665044"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1069
                     /locus_tag="VNB68_02915"
     CDS             <1..1069
                     /locus_tag="VNB68_02915"
                     /inference="COORDINATES: protein motif:HMM:NF039585.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HVD36334.1"
                     /translation="AKAIEYFIINDLSQVYVPFTRDDLWDDSPNTLERRSVIYSILGH
                     ALSQVDILIHPLCPFISNYLHLMFFTTKQSILIESLPKIKDSLINPKVETNVNIAKEI
                     VSLANSARTKAKIKRRWPISRIKVFMKDDDLSKVNDLTEIMKTQMNTESLEILAIPKI
                     KDVYGRLAGLLHYNLVEISAKLKTKRIAPLLKNDLPKILRSFENADQSKIIKTLISEG
                     KYLIEYEGNDFKILKEDVELSYSPSPGYSMAESDTGDIIVLVETIRNSDLLTKGLVKD
                     LARNIQQLRKEKGYLPTDVLSCAYVSNLNEDELTSLLNFKENLAHLVRVKTVKLSLRP
                     NDDKKYKEVEIDGRKVFVSIE"
     gene            1187..1558
                     /locus_tag="VNB68_02920"
     CDS             1187..1558
                     /locus_tag="VNB68_02920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36335.1"
                     /translation="MRGKPLVFDSKQTTLDYCQLSFFKKILSDVSANTVKTGRSFELY
                     RNSLEVTESSLEEEIATAIGEHVVIQVINHGGFIPPIIQIQCLFTLDEFSQWIYLRSK
                     DLFSECVENLLNCKCVEVLKN"
     gene            1889..2254
                     /locus_tag="VNB68_02925"
     CDS             1889..2254
                     /locus_tag="VNB68_02925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomannose isomerase type II C-terminal
                     cupin domain"
                     /protein_id="HVD36336.1"
                     /translation="MIYTNHFRMNVYSEVRPWGKFEKFNENTPCTVKLLYINQGSRLS
                     LQYHTKRNEFWRIIKGQALVQVQDKEVHLTEGEEIVIPRGAKHRITAPNSDCVILELS
                     FGVFDENDIVRIEDDYKRI"
     gene            2447..3070
                     /locus_tag="VNB68_02930"
                     /pseudo
     CDS             2447..3070
                     /locus_tag="VNB68_02930"
                     /inference="COORDINATES: protein motif:HMM:NF012239.4"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 1-alpha"
     gene            3086..3739
                     /locus_tag="VNB68_02935"
     CDS             3086..3739
                     /locus_tag="VNB68_02935"
                     /inference="COORDINATES: protein motif:HMM:NF015125.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EF-Tu/IF-2/RF-3 family GTPase"
                     /protein_id="HVD36337.1"
                     /translation="MFEPPEKPTGKPLRIPIQDVYTITGVGTVPVGRVETGVLRANEK
                     VIVMPSGVTGEVKSIETHHTQMESAEAGDNIGFNLRGVDKKSIHRGDVIGPVNNPPAV
                     AKEFEAQIIVIHHPTAMAPGYTPVLHAHTAQVAATLSEFIAKIDPKTGGATEDKPKFL
                     KTGDAAIVRIKPVRPLAIETFKEFPEIGRFALRDMGTTIAAGVVKAIIEKYDPSAKK"
     gene            3770..4081
                     /gene="rpsJ"
                     /locus_tag="VNB68_02940"
     CDS             3770..4081
                     /gene="rpsJ"
                     /locus_tag="VNB68_02940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HVD36338.1"
                     /translation="MAQQARIKLTSTNLPMLESVCSEIKGIGEKNGIKLRGPHPLPTK
                     KMKVVTRKSPCGQGTNTWDKYEMRIHRRVIDLGADDRSIRQLMRLKIPDDVYIEVSLT
                     Q"
     gene            complement(4168..>4407)
                     /locus_tag="VNB68_02945"
     CDS             complement(4168..>4407)
                     /locus_tag="VNB68_02945"
                     /inference="COORDINATES: protein motif:HMM:NF013224.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC ligand binding domain-containing
                     protein"
                     /protein_id="HVD36339.1"
                     /translation="FPFDKQITEKLKRLSAISEVYRTQGVYDLITKIVYSSEKEFKET
                     MSGITRIDGVNSTLTLLIADKRELIAEMEPIALNS"
BASE COUNT         1535 a          759 c          898 g         1215 t
ORIGIN      
        1 tgcaaaggca atagagtatt ttataataaa cgatctaagt caggtatatg ttccttttac
       61 aagagacgat ctgtgggatg atagtcccaa taccttggaa cgaagatcag taatatactc
      121 aattttgggt catgccctaa gccaggtcga tatattgatt catcctctat gcccatttat
      181 cagtaactat ctacacttga tgttcttcac gaccaaacaa tctatcttga tagaatcctt
      241 gccaaaaata aaggattcat taataaatcc taaagtggaa acaaatgtca atatagcgaa
      301 ggaaatcgtc tcccttgcaa attctgcaag aacgaaagca aaaataaaga gaagatggcc
      361 gataagtaga attaaagtct ttatgaaaga tgatgactta tcaaaggtga acgatcttac
      421 agagattatg aaaacacaaa tgaacacaga atctctggag atattggcaa tacccaaaat
      481 aaaggatgtt tatggtagat tggcaggtct attgcattac aatttagtgg aaatatcagc
      541 caagctaaag acaaagcgaa ttgctccact tttaaagaac gatcttccca agatattaag
      601 atcttttgag aacgcggacc aaagtaaaat cataaagact ttgatatccg aaggaaaata
      661 cttgatagaa tatgaaggga atgatttcaa gatattgaaa gaagatgtag agttatctta
      721 ttctccatct ccaggatatt ctatggcaga gtcggatact ggagacatca tagtcttggt
      781 agaaactata cgaaacagtg atctacttac taaaggcttg gtcaaagatc tagctagaaa
      841 tatacagcaa ctaagaaaag agaaaggtta tttgccgact gatgtattat catgcgccta
      901 tgtgtcgaac ttgaatgaag acgagttgac ttctcttcta aatttcaagg agaatctagc
      961 tcatttagta agagtaaaaa cagtgaagtt gagtttacga ccaaatgatg ataagaaata
     1021 taaggaggta gaaattgatg gaagaaaagt gttcgtgtcg atagaatagt gataataaac
     1081 tatagagaat aaattttaca gacggtgtta ctttattatc tcataactta atgtcaatgt
     1141 ttgttgtcat ctaagtataa attgtaaaat catcaaagat catttattga gaggtaagcc
     1201 cttggtattc gatagtaaac agacgacatt ggattattgt cagcttagct ttttcaagaa
     1261 aatattatct gatgtatctg ctaataccgt taaaacgggc agatcatttg aattgtatcg
     1321 gaattctcta gaggtaactg aatcaagtct agaagaagaa atcgctacag ccatcgggga
     1381 gcatgttgta attcaagtta taaatcacgg tgggtttatt ccaccaataa tccagataca
     1441 atgtcttttt actttggatg aattttcaca gtggatttac ttgaggagca aggatctatt
     1501 ttctgaatgt gtggaaaacc tactaaactg taaatgtgtt gaagttctta agaattaagg
     1561 caattacaat atctaccagg ttttctacgt agtgtttgta ctccaactag actgctctag
     1621 ttattgatcg gtccttcaag tccaaggtgt caatccaaat acgaaaaact gttacctata
     1681 tccggaacta tttactattg taacctaatt cgaataaata agttatcgtg aaagaggtat
     1741 atgtagaaat ttatccctta atttcgtgct tccgtcgcag gaggcattct gatgattcat
     1801 ctcacatttc ggcaacattt gtaatgtgta aaagataaca aagaatctcg cattaatttt
     1861 tacaatagtc acaaggtaat cattaaattt gatatataca aatcatttca ggatgaacgt
     1921 atattctgag gtgagacctt ggggaaagtt cgaaaaattt aatgaaaata caccttgtac
     1981 cgttaaactt ctctacatca atcagggttc tcgtttaagt cttcaatatc ataccaaaag
     2041 aaatgaattt tggagaatta tcaaaggtca ggcacttgta caagttcagg acaaagaagt
     2101 gcatttgact gaaggtgaag agatagtaat acccagggga gcaaaacacc gaataacagc
     2161 accaaactcc gactgcgtta ttctggaatt atcgttcggt gtattcgatg aaaatgacat
     2221 tgtcagaatt gaggatgatt ataagaggat ttaagaagta gggcaagttg ctatcttgcc
     2281 tttaatgaaa aacaacaaaa taatatcaat gcgacctgat atctacaatt agaatcagag
     2341 tatcgtacag aattaaataa tacttgctct tcttctcttg ttaacgaaat acaaataaag
     2401 cccatgcatt gctctaccca taatgagcgc aagtaaaaag ccacacatga acctcgtggt
     2461 tgttggccat gtcgataatg gtaaatccac tatcgttggt catttattgg tcgatatggg
     2521 tgtgatcgac cagagaacta tagacgcctt tgcaaaagaa tctgaagcta ctggaaaggg
     2581 agataccttc aagtatgctt gggtgcttga tagcattaag gacgagagag aaagaggtat
     2641 taccatcgat cttgctttcc agaaatttga aaccgccaaa tatttttaca ctttaataga
     2701 cgcaccaggc caccgggatt tcattaagaa catgatcact ggcgcatcag aagctgatgt
     2761 agctattttg gtcgtttcca caaagtcttg agaaactgaa gctgctacag acccaggagg
     2821 gcaagcacga gaacacgcct tcctatcaag aaccctgggt gtaggacaga tgactgtcgc
     2881 attaaataaa atggatgatt ccaattactc ggaagcacgg tacaaggaag ttaaagaaac
     2941 cgtggaaaaa atgctcaaac tcgtagggta taacaccaca aagatcaact ttatcccagt
     3001 atcgggttgg aagggcgata accttgtcaa gaaatcggaa aacatgccat ggtacaaagg
     3061 accaacgctt tctgaagcat tggacatgtt tgaaccaccg gaaaaaccga cgggcaaacc
     3121 tctgagaatt ccgattcaag atgtttatac catcacgggt gttggtacgg ttccggtggg
     3181 gagagttgaa acgggtgtgt taagggcaaa tgaaaaagtg atagtgatgc cttctggtgt
     3241 aacgggagaa gtaaagtcta ttgaaactca tcacacgcaa atggaatcag cagaagctgg
     3301 agataacatt ggttttaacc ttagaggcgt ggacaagaaa tcgatacacc gtggagatgt
     3361 tatcggtcca gtgaataatc ctcctgcagt ggcaaaagaa tttgaagcac agataatcgt
     3421 gatacatcac ccaactgcta tggctccagg atatactcca gtgctacatg ctcacacagc
     3481 tcaagtagcc gcaacgcttt cagaattcat agcaaaaata gacccaaaga cagggggagc
     3541 aactgaagac aagccaaagt ttctgaagac aggtgatgct gcgatcgtga gaattaaacc
     3601 tgtaaggcca cttgcaatag agacttttaa agaatttcca gagatcggaa gatttgcctt
     3661 gcgagatatg ggaacgacca tagcagcagg tgtagtcaaa gccataatcg aaaagtacga
     3721 tcctagcgca aagaagtaaa acatgaacta aaacatgtga ttctatccta tggcacaaca
     3781 agcacgaata aaactcacca gcactaattt acctatgtta gagagcgttt gctcagaaat
     3841 aaaaggaatt ggcgaaaaaa atggtatcaa gttgagagga cctcatccac ttccgacaaa
     3901 gaaaatgaaa gttgttacaa ggaaatctcc atgtggtcag gggaccaata cgtgggataa
     3961 gtatgaaatg agaatccata ggagagtaat agatttggga gcagatgata gatccattcg
     4021 tcagctcatg cgactaaaga tccctgatga cgtctacatc gaagtttcat tgacgcaata
     4081 atttctaatt agcaaagaaa gaaagaaaac ataatcaata gcagggagat gaaacttcct
     4141 ctaattgact atgaaggtac atttaaacta tgaatttaag gcgattggtt ccatttctgc
     4201 tatcagttcg cgcttgtcag ctattaacaa ggtcaatgta gaatttactc catctattct
     4261 agtaatccct gacatagttt ctttaaattc tttctcggaa gaataaacaa tttttgtaat
     4321 taaatcatag actccttgtg ttctgtaaac ttctgaaatt gcagataatc ttttcagttt
     4381 ttcggtaatt tgtttgtcaa atggaaa
//
LOCUS       DATLQL010000278         1575 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1309856, whole genome shotgun sequence.
ACCESSION   DATLQL010000278 DATLQL010000000
VERSION     DATLQL010000278.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1575)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1575)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1575
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1309856"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..983)
                     /locus_tag="VNB68_02950"
     CDS             complement(<1..983)
                     /locus_tag="VNB68_02950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase family protein"
                     /protein_id="HVD36340.1"
                     /translation="MSSINKITVLGSGVMGHGIAQISATAGYNVFLRDIEQSFLDKAM
                     EKVKWSLNKLVEKNKLRSSDADTIYNRIQPVVDLHEALKDADMLVEAVPEDMALKRKV
                     YSDVDKFAEEKTIYSSNTSTLPITEMGNLTGRPERFIGLHFFNPPQIMQLIEVIPGRS
                     TNQKTIDMALKFVNSIGKSPVLCHKDVVGFIVNRIFIPMVHEAVFCQQRDNVSTRKLD
                     SAVKFKLSLPMGILELADYTGIDVIHKATIEMFSRDSKSIYPNHKIEELFREGKLGQK
                     SGNGFYDYKGTNYERIDLTEQEGEDYNPIKLVSVAANNASWLISNGVCNRE"
     gene            1120..>1575
                     /locus_tag="VNB68_02955"
     CDS             1120..>1575
                     /locus_tag="VNB68_02955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36341.1"
                     /translation="MVSGDSEEVIKKVDFVKNRLIELYKRNIVKINHSVMELVCARHL
                     IRYGYSVDVEKRLTDILVCDVYATKGDGEAVVEIETGFVPPEHALDPLSYYTARITSK
                     IARYSKFANQFVLATTPASILSLPYIFRRPPRDRKYNELQQLKLLCDKYY"
BASE COUNT          455 a          318 c          286 g          516 t
ORIGIN      
        1 tcctctctgt tgcagacccc attcgaaatg agccatgatg cattgtttgc tgctactgat
       61 accaacttta taggattgta atcttccccc tcttgttcgg taagatcgat tcgctcgtag
      121 ttagtacctt tataatcgta aaatccattg ccagattttt gtcccaattt tccttcacgg
      181 aataattctt caatcttgtg attaggatag attgatttac tgtctctcga aaacatctct
      241 atggtagcct tatgtatcac gtctatacct gtataatctg caagttctaa aatccccatt
      301 ggaaggctca atttgaattt tacagcagaa tctaattttc tcgtggagac attgtctctc
      361 tgttgacaga atactgcctc gtgaaccatc gggataaaaa tccggtttac tatgaatcct
      421 acaacatctt tgtgacacaa tactggagat ttgccaatgc tatttacaaa tttgagtgcc
      481 atatcaatag ttttttgatt agttgatcta ccagggatca cttctataag ttgcattatt
      541 tgaggaggat tgaaaaagtg caagccaata aacctttccg gtcttccagt taagttcccc
      601 atctctgtta taggcaaggt gcttgtattt gaagagtaaa tggttttttc ttctgcgaat
      661 ttatctacgt ctgaatagac cttccttttt aaggccatgt cctctggtac tgcctctaca
      721 agcatgtctg catcttttag agcttcgtgt aaatctacaa caggctggat tcggttgtat
      781 atcgtatcag catcagaaga tcttaactta tttttttcaa ctagtttatt caaagaccat
      841 tttaccttct ccattgcctt atctaggaac gattgctcaa tatcacgtaa aaaaacattg
      901 tagcctgccg tggcagagat ctgggcaatc ccatgaccca taactccaga ccctaggacg
      961 gttattttat taatcgaaga catccgatca ctagttggat aatacatatt tttaatttta
     1021 ttgctttaat ggtaggcatc tttaaaacca cacctgctaa tattaaattg gttggactta
     1081 gtacgattta catcagatgt tacttatctt tcaaataaga tggtttcagg agacagtgaa
     1141 gaggtaatta aaaaagttga ttttgtaaag aaccgtttaa tagaactcta caaaagaaat
     1201 atcgtaaaga tcaaccattc agtgatggaa ttggtttgcg ccagacacct gattcgttat
     1261 ggatattccg ttgatgtcga gaagaggctc acagatatac tcgtgtgcga cgtatatgca
     1321 acaaagggtg atggagaggc tgtcgttgaa attgaaactg gttttgtacc tccggagcat
     1381 gcattagacc ctttatctta ctatacagct agaataacaa gcaaaatcgc gcggtacagc
     1441 aaattcgcaa atcaatttgt tctcgcaacg actccagcaa gcatcctttc gcttccgtat
     1501 atattccgta ggcctccacg tgacagaaaa tataatgaat tgcaacagct caaattgctc
     1561 tgcgataagt attac
//
LOCUS       DATLQL010000279         4156 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_245116, whole genome shotgun sequence.
ACCESSION   DATLQL010000279 DATLQL010000000
VERSION     DATLQL010000279.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4156)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4156)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4156
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_245116"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1334
                     /gene="gatE"
                     /locus_tag="VNB68_02960"
     CDS             <1..1334
                     /gene="gatE"
                     /locus_tag="VNB68_02960"
                     /inference="COORDINATES: protein motif:HMM:TIGR00134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="Glu-tRNA(Gln) amidotransferase subunit GatE"
                     /protein_id="HVD36342.1"
                     /translation="IVTDVALSLGRLLRSTKRVTRGIGSIRQDVNISLDNGPVVEVKG
                     VQKLFQLDEVIQNELLRQDGLIRIARRIQERTTENPSRLVYRTKDLTAILSSSPSMVV
                     KRILENKNNRVIALCISDFKGLLGFEPYPGIRLGKQLSELVRFFGLGGIFHSDELPNY
                     GINAQDVSKISSALEMNPKDAFILIGGPSEVLPLAVREVYDRLIKAFSGVVPETRSVA
                     NDGSTVFIRPRPGSARMYPETDIPYLSIHESKIRDLKHKIPRPWNEIISTLSKEYTIN
                     RKLAEQIYDSDYLSLFEEIASLTDISPSFVVSKLTEDFVNFERQGYDLNVLGNDMIKD
                     AFVRLSRSQIAKESLPLIFEMILKKEASNIDNSIASLGIKQLSMNDLKAIVDKVIKDN
                     EQIVRDKHNASLGLLMGRCMALLRGNVDGEKVSKLLRERLEFFLGESVNIN"
     gene            complement(1471..2010)
                     /locus_tag="VNB68_02965"
     CDS             complement(1471..2010)
                     /locus_tag="VNB68_02965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36343.1"
                     /translation="MNYILLVIGLVMLFSGIVILAVSSYFVPDPLHTVNARYNGKISQ
                     NQHSDIVLMDVQKRKNISLYILNEPVDTALNAKIINPRNILVVNQNFSNKFYINFIPT
                     VDGNYTATITNLNRTSTSIDVLFASSVLFYNNGDPKIFEIYLIMIGVIMLVAGTGTAI
                     VGSIMVILRKYKSKEYNYS"
     gene            complement(2454..3389)
                     /locus_tag="VNB68_02970"
                     /pseudo
     CDS             complement(2454..3389)
                     /locus_tag="VNB68_02970"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
     gene            complement(3494..4078)
                     /gene="hsp20"
                     /locus_tag="VNB68_02975"
     CDS             complement(3494..4078)
                     /gene="hsp20"
                     /locus_tag="VNB68_02975"
                     /inference="COORDINATES: protein motif:HMM:NF041800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042026 - protein refolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="archaeal heat shock protein Hsp20"
                     /protein_id="HVD36344.1"
                     /translation="MSSPFDEWLGRRRPSSWFPDVDSMMRDMEKLMQEALKNMDQQVP
                     RNLVRERRLDDGSIVRETGPIVYGYSVKIGEDGKPVVRKFGNINSFPGPLGGTFSVSE
                     QREPLIDVIKDNERIKVIAELPGVNKEDLRITANETSLTIESISGERRYHKRIDLPEP
                     VDASTGKSTYKNGILEISFKLKNSTEHGVPIDVD"
BASE COUNT         1270 a          816 c          760 g         1310 t
ORIGIN      
        1 aaattgttac agatgtagca ctatctcttg gaaggttact aagatcaact aaaagagtca
       61 ccagaggaat aggaagcatt aggcaagatg tcaacatttc tctcgataac ggacctgttg
      121 ttgaagtaaa gggagtacaa aaactctttc agctagacga ggtaattcaa aatgaactac
      181 ttcgtcagga cggattaatt cgtatcgcaa gaaggatcca ggaaaggacg acagaaaatc
      241 catcgcggct tgtgtataga acgaaagatc ttacggccat cttaagttca tctccctcta
      301 tggtagtaaa gcgcattctt gaaaataaaa ataacagagt tattgcccta tgtattagcg
      361 attttaaagg gctgcttggt tttgaacctt atcccgggat aagattggga aaacaactaa
      421 gtgagcttgt aagatttttt ggccttggcg gaatcttcca ttctgacgag cttcctaatt
      481 acggtatcaa tgctcaagat gtatccaaaa tttcatcagc acttgaaatg aaccctaaag
      541 atgcgtttat cctaataggt ggtccgtccg aagtattgcc actagcagtt agggaagtgt
      601 atgataggct gatcaaggca ttctctggag ttgttccgga aacacgttca gttgctaatg
      661 atggttctac agttttcata aggcctaggc caggttcagc tagaatgtac cctgaaacgg
      721 acataccata tctgtcaatt cacgaatcaa aaataagaga cctgaaacac aaaattccaa
      781 gaccatggaa cgaaatcatt tcaactcttt ctaaagaata caccattaat agaaagttag
      841 ctgaacaaat ctatgattcc gattatcttt ctctttttga ggagatagcc tcccttactg
      901 acatctcgcc tagttttgta gtctcaaaat taacagaaga cttcgttaat tttgaaagac
      961 agggttacga tctaaatgta ctaggaaatg atatgatcaa agacgcattt gttagattga
     1021 gtcggtctca aattgcaaaa gaatcattac cattaatttt cgaaatgatc ttgaaaaaag
     1081 aagcatcaaa tatagacaac tccatcgcct cattgggcat caaacagcta agcatgaatg
     1141 atttgaaagc gatagttgac aaagttataa aagacaatga gcaaattgtt agagacaaac
     1201 ataatgcatc cttaggactt ctaatggggc gatgcatggc tcttttaaga ggtaatgtag
     1261 atggtgaaaa agtaagcaag ttgttaagag agcgattaga atttttctta ggggagtcag
     1321 taaacataaa ttgaatcatt catttgcaca tcccactcta gcggtgtgat cgatttaaat
     1381 gattttttca taaatgcgat ggcacgcagt aaatggtcaa tggtcaatgg tgcattcgtt
     1441 agattatcct ggtttcacta ttcaacaaaa ctacgaataa ttatattctt ttgacttgta
     1501 tttccttagt attaccatga ttgaacctac aattgctgtt cctgtgccag caacaagcat
     1561 aattacccct atcataatca aatagatttc aaaaattttt gggtctccat tattataaaa
     1621 gagaacgcta cttgcaaata aaacgtcgat actagttgac gttctattca agtttgtaat
     1681 ggttgctgtg taatttccat caactgttgg aataaaatta atatagaatt tgtttgaaaa
     1741 attttgattg accacgagaa tgttgcgcgg atttattatt tttgcattca gtgcagtgtc
     1801 caccggttca ttcaagatat aaagtgaaat attcttcctc ttctgaacat ccataagtac
     1861 aatatcgcta tgttgatttt gggagatttt tccattatat ctggcattta cagtgtgtag
     1921 agggtcaggc acaaaatatg aagagaccgc aagaataaca atcccactga agagcatgac
     1981 aaggccaatt actaataaaa tgtaattcaa atgcagtatg attccacttg gaacagttga
     2041 taagtattgc tcttagaagt aatgaaccgg gcagtttgaa ttggataaga aagcatgatg
     2101 atatgttact ataagaaaat taaatctaat tttttagaca ggaatgtcga tcatgcatta
     2161 tataataatg catttcagtt cgtagtcaat attctggtcc gtgaaatcct catccgacaa
     2221 cttcctgatc gataaaattg gactttgcat tctgagcttc tgtgtcactt cttgtttcca
     2281 cacgtatgag aaaggattgc cttcattttc cttcgaagtt acacgtaagt attcaattca
     2341 tttcctcttc cattttaaac agcaacgcaa accaaaaact agaaagaaca tactgaatgg
     2401 gaaaatctac tagtgggagt cagttgcttt tttaatccca agataatgtg cattcataat
     2461 tcatattcat tacgattctc ctcatcattc ttagatccaa ccagataaac aaacacatca
     2521 tccaatgtga taggggaaac actaaaaaaa agattcttct tcatggcaat acgagacaat
     2581 tcttggatac tcgattcata tgtaaatatc ctcatcaaac tccctccagt atcaacaacg
     2641 gatccaaagg attttaacat ttcaatgtca gcaccgtcct ttgagatgtc tattcgtatg
     2701 ttttgaggga tcttgtcctt aagacttctt attgtaccac tttgaactac ggtcccttta
     2761 tctataattg caatttcatc ggagagggat tccgcctcat ccatgtaatg agttgttagg
     2821 agcactgttt tcccttcatc cttcttctcc ttaattgact tccagacctg ccgccttgat
     2881 attgggtcta ggccaatagt tggttcatca agaaaaagca attcggcttc aacagccatt
     2941 gacatggcca ctaatacctt ctgtttcatt ccacctgata aattcatagc tggagtatcc
     3001 tttgatttat aaaggtcgaa atcatggagc accttttctg agcgtctcct cgattcattt
     3061 ttatccatgc ctctaatccg taaccaatta taaacatggt cccaaggagt cagtgccctt
     3121 aatggtctac cttcttgggg tactactgaa atacggttcc tgatcttcta tggttccctt
     3181 acaaggtcaa atccaagaac ctctgcagcg cctgaagacg gcaagagctg agttgcacaa
     3241 attctaacaa aagttgtctt ccccgcgccg tttcttccaa gaagtgtaaa aatcttttta
     3301 gattgtattt ctaaggagat gttgctcaga gcaattacag gtgagttttt gtatgtcttg
     3361 gaaatttttt cagtcttgat tgcgtgcatt atctgttgac cagtaacgca tctacttgcc
     3421 gggaaatttt actctgacct catgtttaaa cacaactaag gttgtaaggt tttgaaggat
     3481 aatagtagag cggtcagtcg acatctatag gaacgccatg ttccgtagaa ttcttaagct
     3541 tgaaagaaat ctcaaggatt ccatttttgt atgtagattt gcctgtagac gcatctactg
     3601 gttcagggag atcgatccgc ttgtgatatc ttctttctcc agaaattgat tcaatagtta
     3661 gcgatgtttc gttagctgtt attcgaaggt cttccttgtt aacccctggc agttcagcga
     3721 taaccttgat ccgttcgtta tcttttatta cgtcaattaa aggttcacgt tgttcgctga
     3781 ctgaaaacgt tcctcccaaa ggaccaggaa acgaattaat atttccgaat ttccgtacta
     3841 cgggttttcc atcctctcct atcttcactg aatatccata cacaatagga ccagtttctc
     3901 tgacgattga tccgtcatca agccttcttt cccttacaag gtttcttgga acttgttggt
     3961 ccatattttt tagtgcctct tgcattaatt tttccatatc cctcatcata ctatcaacgt
     4021 caggaaacca agaacttggc cgtcttcggc ccaaccattc atcaaatggt gatgacatag
     4081 attactattc acacgctctt cacgtataca gaataataat ctttctcgtg tgcgaaatat
     4141 catacattcc ctgatt
//
LOCUS       DATLQL010000280         1062 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_245135, whole genome shotgun sequence.
ACCESSION   DATLQL010000280 DATLQL010000000
VERSION     DATLQL010000280.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1062)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1062)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1062
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_245135"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            524..691
                     /locus_tag="VNB68_02980"
     CDS             524..691
                     /locus_tag="VNB68_02980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36345.1"
                     /translation="MTAAIQNVDSTFIYDKIGIGSSNQSRTNKILRSVIFGSDCIVAR
                     NAGDDLDALVQ"
BASE COUNT          308 a          202 c          204 g          348 t
ORIGIN      
        1 aatcagggaa tgcgactatc gaaaatataa ttggagctac aataatcgta ataacgccaa
       61 ggttttgggc tacactacct ggtcttatct gtggttcatc ttggccctca gaaacattct
      121 gttccttttt atcggacaaa acttatgttt taagatcctc tcgaagataa aaacgtactt
      181 tttgttcatc gatccaagtc taaacagagg ctgtccttga cactgccttt gcttcagaat
      241 catacctaat agacgtggaa gcatttcagg attgttctgg acagaagaat ggataaccat
      301 tacatattgt acgtggactt gaatttgaaa ccctatgata gtaagattgg aagatttcct
      361 tttaattgaa cgttctacat ctaacgcaat tttagaggcc caatatgaat agttgactaa
      421 ttcaatcaga ttcgaggttt atcatcttcc atatgagtgg gttatttgaa ttgtctttcc
      481 tgtcatgcca atcccgatcg attgaaaatg gaatcatagt tacatgactg cagctataca
      541 gaatgttgat tctaccttca tttacgacaa aattggtatt ggatcctcca atcaaagcag
      601 aactaataaa atcttaagat ccgttatctt tggatcggat tgtattgttg ctaggaatgc
      661 aggcgacgac ctcgacgctc tggtccaata gctgtgacag gtgagtaact aagtaaggta
      721 tgtcagttac gggattttaa aagtcataat aggaatcaag caacgaggta tttgaaaatt
      781 ttcaaaagca aagatccata tgtatatgac tttgaattta gtctcttttt gctctttttg
      841 cttaggtggt tagtaaggct tagctactta ccataccata cactacttat tgtctaaacc
      901 gccactacct gaaggggtct gcgttatgtt ttctttatac acccatggtg tgcaaggaca
      961 gtaaaattaa gtgctaccag cctagtacat gtgccgattt tcttgcagca tcctctaatg
     1021 cttgttgtgg ctctttctct ccgtaagaaa cctcttgtat tg
//
LOCUS       DATLQL010000281         1568 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1310529, whole genome shotgun sequence.
ACCESSION   DATLQL010000281 DATLQL010000000
VERSION     DATLQL010000281.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1568)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1568)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1568
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1310529"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1461)
                     /locus_tag="VNB68_02985"
     CDS             complement(<1..1461)
                     /locus_tag="VNB68_02985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HVD36346.1"
                     /translation="MLEAYTRDVGRGIARIDYDTMDSLAVSTGDVVEIRGKRRTTAKC
                     LPLYPSDEGKGIIRIDGLVRNNSGIAIGDKIFIRKIKAVPAEKIFLSPLEAIPPIDER
                     YLADALESVPIIKGDNVMVPYFGGRLTFQVIGVTPANADAVLVTQKTIFHIAEKGETL
                     RGVPQVTYEDIGGLREEIQKVREMIELPLRHPEIFEKLGIEAPKGVLLHGPPGTGKTL
                     LAKAVANESNSHFISISGPEIMSKFYGESEARLREIFKEAKEKAPSIMFVDEIDSIAP
                     KREEVTGEVERRVVSQLLSLMDGIEARGKVIVMAATNRPNALDQALRRPGRFDREIEI
                     KVPDKRGRLEILQIHTHNMPLDTDVDQDKIAAITHGFVGADLEYLCKEAAMKCLRRLL
                     PELNLEDEKLAPDVLNRLIITMNDFENAIKDVMPSAMREVYLEPPDVHWSDIGGLEEV
                     KHELQEAVEWPMRFPDMYNKLGHTIPKGVLLHGPSGT"
BASE COUNT          435 a          356 c          255 g          522 t
ORIGIN      
        1 tgttcctgat gggccatgta ataaaacacc ttttggtatt gtatgtccca atttattata
       61 catatcagga aaacgcattg gccattctac tgcttcctgt aattcgtgtt taacttcttc
      121 caagccacct atgtcggacc aatgtacatc tggtggttcg agatagactt ctctcattgc
      181 ggatggcatt acatctttaa tggcattttc aaaatcattc atggttatta tcaatctgtt
      241 aagtacatct ggtgcaagtt tttcatcttc caaatttagc tctggaagta agcgacgtag
      301 acacttcatt gctgcttcct tgcacaagta ttcaagatca gcaccaacaa aaccatgagt
      361 aattgctgct atcttgtctt gatctacatc agtatcaaga ggcatgttat gagtatgaat
      421 ctgaaggatt tccagtctgc cacgtttatc aggtacttta atctctattt ccctatcgaa
      481 acgacctgga cgtctcaagg cttggtctaa tgcattgggc ctatttgtag cagccataac
      541 tatgacttta cctcttgctt caataccatc cattaatgat aaaagctgag atacaactcg
      601 tctttcaact tcacctgtta cttcttctcg ctttggagct atagaatcaa tctcatccac
      661 aaacatgata gaaggtgctt tctcttttgc ttctttgaat atctctctaa ggcgagcttc
      721 agattcacca tagaatttac tcattatttc aggaccagag atacttataa aatgagaatt
      781 gctctcattt gctactgctt ttgcaagcaa agttttaccg gtacctggtg gaccatgtaa
      841 taaaacacct tttggagctt caattcctag tttttcaaat atttcaggat gccttaaggg
      901 aagttcaatc atttctcgta ctttttgtat ctcttcgcgt aaaccaccga tatcctcgta
      961 ggtaacttgt ggaactccac gcagagtttc tcctttttct gctatatgaa atattgtttt
     1021 ttgcgttact aagacagcat ctgcatttgc tggagtaaca ccaataacct gaaacgtaag
     1081 acgtcctcca aaataaggaa ccataacatt atcacccttt attataggta cactctcaag
     1141 tgcatcagca agataacgtt cgtctattgg aggaatggct tcaagcggag aaagaaaaat
     1201 tttttcagca ggaactgctt tgatctttct aataaaaatt ttatcaccaa ttgcgattcc
     1261 agaattattt ctaacaagac catcaattcg tataatacct tttccctcat ctgaaggata
     1321 aagaggtaag cattttgcag tagttctacg ttttcctcta atctcaacaa catcaccggt
     1381 agaaactgct aaagaatcca tggtatcgta atcaattcgt gctatacctc taccaacatc
     1441 acgagtataa gcttccagca cttttagtga tgtattgttt cctgctgctg ctgttgttgc
     1501 tcctcctcct cctcctcctg caccaggatt actaccacca ccaccaccac tgttgccact
     1561 attattat
//
LOCUS       DATLQL010000282         1662 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1310585, whole genome shotgun sequence.
ACCESSION   DATLQL010000282 DATLQL010000000
VERSION     DATLQL010000282.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1662)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1662)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1662
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1310585"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..431)
                     /locus_tag="VNB68_02990"
     CDS             complement(<1..431)
                     /locus_tag="VNB68_02990"
                     /inference="COORDINATES: protein motif:HMM:NF039409.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6328 family protein"
                     /protein_id="HVD36347.1"
                     /translation="MSSKSEDNDDDPVMRSSTERYDRVGVTFRWPQILASASSIFFGF
                     LLNIAVDPPSYFTFFDNMILLVALYAVTIATTMFILPVIFHASHYRKLDVERFLLRNK
                     QYVLIGIFCVMLAMYLSLGLLLTSKLPGEIAYGLASLPFII"
     gene            complement(572..1048)
                     /locus_tag="VNB68_02995"
     CDS             complement(572..1048)
                     /locus_tag="VNB68_02995"
                     /inference="COORDINATES: protein motif:HMM:NF039409.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6328 family protein"
                     /protein_id="HVD36348.1"
                     /translation="MSSKSEDDDDDPVMRSSTERYDRVGVTFRWPQILASASSIFFGF
                     LLNIAVDPPSYFTFFDNIILLAALYAVTIATAMFILPVIFHASHYRKLDVERFLLRNK
                     QYVLIGIFCVMLAMYLGLGLLLTSKLPGEIAYGLASLPFIIIIIIIMFRFLRRTLE"
     gene            complement(1261..>1662)
                     /locus_tag="VNB68_03000"
     CDS             complement(1261..>1662)
                     /locus_tag="VNB68_03000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="SHOCT domain-containing protein"
                     /protein_id="HVD36349.1"
                     /translation="LVIFGLMLTTRTSPQIGRYFTIMVWALTLPVCFLVGFFQYGAIT
                     GNTLLNILGSGEPYFVLSFLLYIPIGIILFVMLAQKRIMHAQAAQAQAAQAAQALQAP
                     QELERLGSLKQQGLISEEEFQKLKMRMLSGV"
BASE COUNT          557 a          310 c          318 g          477 t
ORIGIN      
        1 ataataataa atggcaagga ggctaaaccg tatgcaatct cacctggaag cttcgaagtc
       61 aacagtaacc ctaaactcaa gtacatagct agcattacgc aaaagatacc tatcaggaca
      121 tactgcttat ttctgagaag aaatctttcc acatcaagtt tacgataatg actcgcatga
      181 aaaataactg gtagtatgaa catagttgtt gctatcgtta ctgcataaag tgctaccaag
      241 aggatcatgt tgtcaaaaaa tgtaaagtat gagggaggat ctactgcgat atttaggaga
      301 aagccgaaaa aaattgaaga agctgaggct aaaatctgag gccagcgaaa agtgacaccg
      361 actctatcat aacgttcagt agaagagcgc attactggat cgtcatcatt atcttctgat
      421 ttagatgaca tgtgaaaatg ttgtatttta gccgtagtat ataaagcgtg gttatttttt
      481 actatgcata tgtcttcaag aaaggtttat cgattcttag ctcgagcttt ctaataattt
      541 tgtcttctta ttagctattc acgcgtacta gctattcaag cgtacgtctc aaaaatcgaa
      601 acatgataat aataataata ataataaatg gtaaggaagc taaaccgtat gcaatctcac
      661 ctggcagctt cgaagtcaac agcaacccta aacccaagta catagctagc attacacaaa
      721 agatacctat caggacatac tgcttatttc tgagaagaaa tctttccaca tcaagtttac
      781 gataatgact cgcatgaaaa ataactggta gtatgaacat cgctgttgct atcgttactg
      841 cataaagagc tgccaagagg attatgttgt caaaaaatgt aaagtatgac ggaggatcta
      901 ctgcgatatt taggagaaag ccaaaaaaaa ttgaagaagc tgaggctaat atctggggcc
      961 agcgaaaagt gacaccgact ctatcataac gttcagtaga agagcgcatt actggatcgt
     1021 catcatcatc ttctgattta gatgacattt gaaaatgttg tatttgagcc gtgtatataa
     1081 agcgtgatta ttttttttct atggatgcct ttccagagta gagttatcaa ttcttagcat
     1141 cattctatta ccatttggat ctatagacac atgcatagat gcaaaggagt ttatagttcg
     1201 gtatgctcga ataatcagca gcttctgacc ttcatttgaa tagccgtaat aatatcattc
     1261 tcatacgcct gagagcattc gcattttgag cttctgaaac tcttcttctg atatcaagcc
     1321 ttgttgcttg agactaccta atctttcaag ttcttgagga gcttgtaatg cctgagcggc
     1381 ttgtgctgct tgagcctgag ctgcttgagc gtgcataatc cttttttgtg ccaacatgac
     1441 aaagagaatt attcctattg gaatatacaa tagaaaagag agaacaaaat aaggctcgcc
     1501 acttccgaga atattcaaca gagtattacc agttattgct ccgtactgaa agaaaccaac
     1561 taaaaaacat acagggagag tcaacgccca taccattata gtgaaatatc tgccaatctg
     1621 gggagaagtc ctagtcgtca acattagtcc aaatatcacc aa
//
LOCUS       DATLQL010000283         1075 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2552675, whole genome shotgun sequence.
ACCESSION   DATLQL010000283 DATLQL010000000
VERSION     DATLQL010000283.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1075)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1075)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1075
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2552675"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            271..651
                     /locus_tag="VNB68_03005"
     CDS             271..651
                     /locus_tag="VNB68_03005"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HVD36350.1"
                     /translation="MSMFKNTKAFSSFSVDDLEKAKKFYGQTLGLEISEEMEGISLHI
                     VGGIEIFIYPKADHTPATFTILNFVVDDVEKAVDNLTNLGVHFEIYKEGELKTDDKGI
                     FHGGPKIAWFKDPAGNFLSVLEEK"
BASE COUNT          341 a          202 c          218 g          314 t
ORIGIN      
        1 tagcaaaaca atatcgaggg ttcggttttt tgaatattga tctcgtgtat gatggcaata
       61 gtttaagttg tacttttatt gccaataatg gaacttcgta cgatgaattc actataaaca
      121 aataaggttt tcacccaatc aacaaagata attattttta catgaatgac ccatctgttt
      181 gtaactacga agataacaac ttacgataat tttacctaat taccaaatgg ttacctacga
      241 cttaatatag tccggttttg aagtgggtat atgagtatgt ttaaaaacac aaaagccttt
      301 tccagttttt ccgtagacga tttagaaaag gccaaaaaat tctatggtca gaccctagga
      361 ctagagatat cagaagagat ggagggaata agtttgcata tcgttggagg tatcgagata
      421 ttcatatatc ccaaagctga ccacacacct gcaactttta ccattcttaa ttttgtcgtt
      481 gacgatgttg agaaagcagt agacaaccta acaaacctag gagtacattt tgaaatttac
      541 aaagaaggtg agcttaaaac tgatgacaaa ggtattttcc atggtggtcc caaaatagcg
      601 tggtttaaag atcccgctgg caatttcttg tcggtacttg aagaaaagtg agtgaaacct
      661 atttcactag atggggactc tgtataaatg taattgaaac atcgaatcta aaaccagaac
      721 cgcagagatc tttttggttt ctatataggc taggcccact caaccggcaa aagtcggtcc
      781 gacgagcgat ccattgtaaa ccgtagttgt gattggctga cccgccaaat gactctcttg
      841 ttttgctgcg gtgattttcg ctcgcaagac tcacccttca ctgtggagct cggcaggttc
      901 gaagaagaca gtcttcgcga cgacgagatg ctgtccgaat ccgagtagga caatgaagct
      961 gaatacgaag accgttaaca gcacaagtat ttttttcccg ctttcttacc acttgtaaaa
     1021 attcattgct taaatgtatg ttaatgagaa ccaatccagc tggaataatg gcagt
//
LOCUS       DATLQL010000284         3528 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1311168, whole genome shotgun sequence.
ACCESSION   DATLQL010000284 DATLQL010000000
VERSION     DATLQL010000284.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3528)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3528)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3528
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1311168"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(228..368)
                     /locus_tag="VNB68_03010"
     CDS             complement(228..368)
                     /locus_tag="VNB68_03010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36351.1"
                     /translation="MSYEIEVSKIKPTEEEIKKKIKTQKIKPDNTEFNDLSFKSYIEN
                     GF"
     gene            complement(499..912)
                     /locus_tag="VNB68_03015"
     CDS             complement(499..912)
                     /locus_tag="VNB68_03015"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HVD36352.1"
                     /translation="MPTNNRIVSIVDDELDITQLYQDAIYGKIDGISVVCFNNPVTAL
                     EHFIENKKDYALVISDLRMPNLNGLDLLEKVKMLNSNVRTILVSAYEVKEDEVFQKFT
                     KEGIIDLFIEKPIPIDRLRQKVREQVQAYKLRMNE"
     gene            complement(1265..1912)
                     /locus_tag="VNB68_03020"
     CDS             complement(1265..1912)
                     /locus_tag="VNB68_03020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36353.1"
                     /translation="MLATKSRIVLISISLSLALALTVATSGVTFAQPIGTTTKLVRAG
                     QGNASSVIIAFVPQNIEIKAGESVMWDNPTTVAEPHSVTFLKDKKYFADFVSPFYVAN
                     STEFRSVNPESNAQPTFPPSQPGETSKIVVAVNARAILPVVLNANNVTYLQPNSNYTM
                     NGTEDYVNSGWLWPDGQAPPGGPPISKFTVTFEKPGTYPYLCNVHPWMTGIVVVK"
     gene            2608..>3528
                     /locus_tag="VNB68_03025"
     CDS             2608..>3528
                     /locus_tag="VNB68_03025"
                     /inference="COORDINATES: protein motif:HMM:NF019352.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase family protein"
                     /protein_id="HVD36354.1"
                     /translation="MVLRSPEFIFITLSMLAVTVIITGQDALGGSASDIFDRNLTGND
                     GQGQSSPLKEMNFSETSEAYSQEGILEATIIIDEHEGMVGNESVKAITYNGSLNGPTL
                     HIKPGERMVVYYVNKLDQPTNIHFHGLHVSPLGSSDNIFRVIGPGETAKYVLDIPIDH
                     ARGTFWYHSHLHGLATDQVGGGLSGLLVIEGLEDLLPDVLHNITQQTFTMRGFPWHYW
                     HLNYTSPTYQTINGEINPVVSISPGETQLWRFANIDPGTFYNITLPGHTLRVIEQDGN
                     PVWEVWDTNYLVIAAGKRFSVLVTGGENGTY"
BASE COUNT         1066 a          709 c          662 g         1091 t
ORIGIN      
        1 tactcagcat tttataaaaa agttcaagtt attccttctc ctgttattaa aaactggtgg
       61 gccaattttg taaatgcccc accagccacg cgcgtgttct tggtgcttgt cgacacttgt
      121 aaggttatag tcaacaaata atataaaagt taaaacgctg atgggcctcg ggaagcaaca
      181 atagacccac cagtatgaaa agttcttttt ggaggtgttg gttgacgtta gaagccattt
      241 tctatgtatg atttaaagga aaggtcatta aactctgtat tatcaggttt tatcttctga
      301 gtctttattt tctttttgat ttcctcttca gttggtttta ttttactaac ttctatttca
      361 taactcatat tccatactaa caaattactt gtttataaaa tccgagattt ttaattatat
      421 tttctttatt tgattatatc tttttcagat tatccaagat gacaatctat taatttaatt
      481 ttttggatat tatccggttt attcattcat tcttagtttg tatgcttgaa cctgttccct
      541 gaccttttga cgcaacctat caatgggaat aggtttttcg atgaataaat ctataattcc
      601 ctccttcgta aacttttgaa atacttcatc ttctttaact tcgtaagcgc taactagtat
      661 cgttctaaca tttgaattga gcattttgac cttttctagc aggtctaatc cattcagatt
      721 tggcattctc aagtcagaaa taacgagagc ataatctttt ttattttcaa taaaatgctc
      781 caaggcagtt acggggttgt taaaacagac aactgagatt ccatcaattt tgccatatat
      841 ggcgtcttga tacagctggg taatatcaag ctcgtcatct acgatactaa caatcctgtt
      901 attagtgggc atctagttac cgccaaacct cccagccccc aattcccaga ccttaatctg
      961 tacggcctct aacctaaata aagtttttgt gaattttcaa attaaactac agttaattca
     1021 aatccccttg gtcgcacttt aggaagatta gtttaagccg cttactagaa aggttcaaag
     1081 ctcgatgaac gctaaactgt aagaaaactt taaagctcat cgattcataa ttaaatgaga
     1141 atccactttt tcgcactgat atcatcacgc atctaataag actagaccaa aatgtttaga
     1201 cacttcgatt tagtacacaa cgttctcaaa gcataaatgc gactgatatc acgattatgg
     1261 acaactactt gactactacg atgcctgtca tccaaggatg aacgttacat agataaggat
     1321 aagtgccagg tttttcaaaa gttaccgtga atttactaat tggcggacca ccaggtggag
     1381 cctgtccatc gggccaaagc cagccggaat ttacataatc ttcagtccca ttcattgtat
     1441 agtttgaatt tggttgaagg taagttacat tgttagcgtt tagcactact ggaagaatag
     1501 cccttgcatt tactgcaaca actattttac ttgtctcacc aggctgacta ggcgggaaag
     1561 ttggttgtgc attggattct ggatttacgg accgaaactc cgtcgagttt gccacgtaga
     1621 atggcgaaac aaaatctgca aaatattttt tatcctttag aaaagtaaca gaatgaggtt
     1681 ctgcaacggt ggttgggtta tcccacatca cgctctcacc agcttttatt tctatatttt
     1741 gaggaacaaa ggcaataatt acactgctgg catttccttg tcctgcacgc actaattttg
     1801 tagtggtacc tattggctga gcaaaagtca caccagaagt tgccactgta agagctaatg
     1861 ctagtgacaa gctaattgag attaaaacta tccttgattt ggttgctagc aatagaatca
     1921 cggcaacttt actaatattt aaagatgtat aatctagacc ttgcaaccaa tggtactatc
     1981 agtagaaaag gaaaataatc tctttttttg aaatttaggc aaagttaatg cttagtactt
     2041 tgtacgtata tttgaaatcc atttttagaa ccgatatcgt cacgcatccc tccgcgtccg
     2101 taccgaaaat ataaatcaca gatcaaaaag ctggaaactg tcataaaagc aatatcccca
     2161 ttggaattat tttcaaaacc gtgaaagaca aaaataaaat actggggcta ggcaaaattg
     2221 tcttatctga aggaactaat gccaataaga agaatcatat ccaaatcata gaatctatga
     2281 gagcctagat tacccactag aggacacagc atccggatac ttcgaaacaa ttggtatttt
     2341 cacagcatta gttattggta atgggaacgt tatattcttg gatgagccgg ccttacattt
     2401 acatccaacc aaaataaaat actttggcag aaccctaatg ggtatgtccg aaaagcaagt
     2461 aattgtgata actcactccc catattttgt tgaattaagt ctgttctccc ctggtagaaa
     2521 cttagtttct gtaagaaaaa ttggcttact cagtcacatc gcgacaaaca caaaagattt
     2581 aagtactatc tcctaagttc taggattatg gttctacgat cacccgaatt tatattcatt
     2641 actctgtcta tgttagctgt gacagtcatt attacaggcc aagatgctct cggcggcagt
     2701 gcaagcgata ttttcgatag gaacctgacc ggtaatgacg gtcagggaca gtcatcacct
     2761 cttaaagaga tgaatttctc tgagacttcc gaggcgtaca gccaagaagg aatcttggaa
     2821 gcgacaatta tcattgatga gcatgaaggt atggttggaa acgaatcagt gaaagcgata
     2881 acctataacg gctcgctcaa tggaccaacg ctacacatca agcctggcga acggatggtc
     2941 gtatactatg tcaacaagct cgatcaacct actaacatac actttcacgg gttacatgtg
     3001 tcaccattag gcagctcaga caatatcttt cgtgtaattg gaccaggaga aactgcaaag
     3061 tacgtgctcg atattccgat cgatcatgca agaggaactt tttggtatca ttcacacctg
     3121 catggtctcg ctactgatca agtgggtggg gggttgtctg gtttgctcgt gatagaaggc
     3181 ttagaggact tgctacctga tgtgttacac aatatcactc agcagacgtt taccatgagg
     3241 ggttttccat ggcattattg gcaccttaac tatacttccc caacatatca gactatcaat
     3301 ggagagatca atcctgttgt aagtatttca ccaggcgaga ctcaactatg gcgatttgcg
     3361 aatattgatc ccggaacgtt ttacaatata acattgccag gccatacctt gcgcgtcatc
     3421 gagcaagatg gtaaccctgt ctgggaggtc tgggatacaa actaccttgt gattgccgct
     3481 ggtaagcgat tctccgtgct ggttactggc ggagaaaatg gaacttat
//
LOCUS       DATLQL010000285         1010 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1311196, whole genome shotgun sequence.
ACCESSION   DATLQL010000285 DATLQL010000000
VERSION     DATLQL010000285.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1010)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1010)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1010
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1311196"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..839
                     /locus_tag="VNB68_03030"
     CDS             <1..839
                     /locus_tag="VNB68_03030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HVD36355.1"
                     /translation="LLHEDSQYIESLPFNDLEGSIKTLNSIRKDIACIITEPLLGTAG
                     CIPAQNDYLRGLQEYANKNDIVFILDEIVTGFRLSIRGAAHLYNLKPDLFTLGKIAGG
                     GLPIGVLCGKKEIMSLIDPVARQTKERLCLVGGGTFSANPMTMSAGYATLSHIRNNES
                     RLYSRINNLGKKARDELTKLFSDAKIRVQITGVGSLFMLHFLNDKVGKIVNALDVALS
                     NKERLKLYHLSLISRYGIFFLPLKMGAFSEAHSDADVKRLISATQEIINSRLLSRTVD
                     NS"
BASE COUNT          316 a          195 c          202 g          297 t
ORIGIN      
        1 gactacttca tgaagattca caatatattg aatctttgcc gttcaatgat ctggaaggat
       61 ctataaaaac gctgaactct attcgtaaag acatcgcttg cattattact gagcccctcc
      121 ttggcacggc cggctgcatt ccagcacaga atgattattt acgtgggctt caagaatatg
      181 cgaataagaa tgatatagtt ttcattcttg atgaaatcgt cacaggattt agattgtcta
      241 ttcggggagc tgcgcacctt tataatctta aacctgatct ctttacttta ggaaaaatag
      301 ctggaggagg attgccaatt ggagtcctct gcggtaaaaa agagataatg tcacttattg
      361 atccagttgc taggcaaaca aaagaaaggc tctgtctggt cgggggcggt actttttctg
      421 ctaacccaat gacaatgtct gcgggttatg caactctctc tcatattaga aataacgaat
      481 caaggcttta ttctcgaata aataatttag gaaagaaggc tagagatgag cttaccaagc
      541 ttttctctga tgctaaaatc agagttcaaa taaccggtgt tggctcgctt tttatgctac
      601 actttctcaa cgacaaagtt ggcaaaatcg tgaatgcatt agacgtggcc ctgtccaata
      661 aggaacgcct aaaactgtat catctaagcc tgatcagcag gtacggaata ttctttttgc
      721 cactaaagat gggagccttt tctgaagccc atagcgatgc tgacgttaag aggttaattt
      781 ctgctactca agaaattatc aacagcagac tactttctcg gaccgttgac aattcataat
      841 aatctaggtc gatgaatctg ctcgttgtca gaaaacataa taaaaattga atgctcaagt
      901 ctacatcata tcccagttgg gctaatgctc tagtacagtt atttaggaac aatatctaat
      961 aaccgtagga tctcgtttaa aaatatgagt gaaaaacaag atgaacttag
//
LOCUS       DATLQL010000286         1341 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1666612, whole genome shotgun sequence.
ACCESSION   DATLQL010000286 DATLQL010000000
VERSION     DATLQL010000286.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1341)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1341)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1341
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1666612"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            743..842
                     /locus_tag="VNB68_03035"
     tRNA            join(743..757,783..842)
                     /locus_tag="VNB68_03035"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:803..805,aa:Arg,seq:cct)
     gene            complement(981..1202)
                     /locus_tag="VNB68_03040"
     CDS             complement(981..1202)
                     /locus_tag="VNB68_03040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36356.1"
                     /translation="MAQDDNFPTSINKNALAIIRMPDGKEYEIALPAKTFSSGREGFY
                     AQVPPFVYENEVYGGQIQIWRKTKPKKET"
BASE COUNT          362 a          271 c          259 g          449 t
ORIGIN      
        1 tttccatggt taggcgtaaa ggagtaaact gaaacagact tgggcataca tgagcgttca
       61 agtccacgtc tagatgtttc tatgggtctg ttcagccgtt tcatgatcac ttttaatgca
      121 ttcagttaca aggatcttaa gtggctggaa ccttatgaaa ccgtcaggaa gagcccgttg
      181 cctttgcaaa acttggagtc gactttctat ttcttgtttg tgctcatcgc atgttactcc
      241 gatcatgaat tcctcatttt gtgtatttat tgaaacaatg taggacgcag ctattctaca
      301 gtctttgcga ttcttcctca gggaacagtg ctcaggcact aacacaagag agattactat
      361 tgatataata taaaacttcc atccaaatgt ttacccacat aggtatctca tggtgcacgg
      421 tactgctact gtcagagtca gcagcggact aattaacctt tcaacaattc caaaatcaca
      481 caacaattga atatctgagt ttacttgcga tgccattttc gtatcgatat acgggtcagt
      541 tatttaattc gctagattag attatttgaa atcagtcctt ttctttggga gaaatatcga
      601 tagggaaatt tacgaaaaag aggacagtca attttcacta attttcagta ttttatctct
      661 ctactagccc ttctgcataa ttgttcttgt caccaaggtg ccaaatcaat gcttaaattg
      721 gtgcaactaa ttttaagaac gagggttcgt agcgcagact tactgttctt ggtagggtgt
      781 aaaatggata gcgcggacgc ctcctaagcg tcaggtcgag ggttcaaatc cctccgagcc
      841 cgcattgata ctagttctca aataggggct gtaagttgct gaggatagac tcaggcccat
      901 tttcattatt ttttcttgta ccattgctag atatttgatt actctattat acagcgatcg
      961 gtcatcaagc agcatattac tcatgtttct ttttttggct ttgttttcct ccagatctgg
     1021 atttgacctc cgtaaacctc attttcgtat acaaacgggg ggacctgggc atagaaccct
     1081 tcccttcctg agctaaaagt cttcgctggc agagctattt cgtattcttt cccatctggc
     1141 attctaatta ttgcaagtgc gttcttgttt atactagttg ggaaattgtc atcctgcgcc
     1201 aaatttcact attaattaat aacgggtatt aataaaacgt aaggcgtaag ataaccttta
     1261 attgtgctat aaccattcta attggaccag cttagaacat atatgcttga tttatcactt
     1321 atgcagattg gcagtatttt t
//
LOCUS       DATLQL010000287         1037 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1124050, whole genome shotgun sequence.
ACCESSION   DATLQL010000287 DATLQL010000000
VERSION     DATLQL010000287.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1037)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1037)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1037
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1124050"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            245..>1037
                     /locus_tag="VNB68_03045"
     CDS             245..>1037
                     /locus_tag="VNB68_03045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase family
                     protein"
                     /protein_id="HVD36357.1"
                     /translation="MKFAFSTNAFKKHPLEDAVMKIGEVGYEGVEILCDVPHAYPPVF
                     KKEDRRSLKRLISNYNLQISNLNAFTLYAIQDIYHPSWIEDKTTFAQLRIEHTINCIM
                     LAKDVGAKNLSTEPGGPVDGRIDRKKLEKLFVSNLSKVTEVAEREGVNILVEPEPNML
                     IERSEQFLNFIKRIRSEVVRLNFDIGHFFCVKEDPAKIVHKLSDYIEHFHLADIAKSR
                     VHDHLIPGKGAIDFRSVFKAIDEIGYNGFVTVELYPYQDDPIYAAS"
BASE COUNT          322 a          188 c          212 g          315 t
ORIGIN      
        1 aggtctatgt taagtgcatc gtctgcgtgt tcagctttgc ccaaatcgtc gattactcct
       61 ttgaaagtat gtatatatta gttgatcgtc cctgatagcc aatctacagt tgatcaggac
      121 agtcagctat tatcttacaa ctttggcaat ccataatgat ttgggattta gaacttaccc
      181 ttttcagtat atcttgttct agtttcacaa atatattaaa gaagaaaaaa attaatgagc
      241 tggtatgaaa tttgccttca gtactaatgc ctttaaaaaa catccactag aagatgctgt
      301 tatgaaaatt ggcgaagttg gatacgaggg tgtcgaaatt ttgtgtgatg tccctcatgc
      361 ttatccacct gtcttcaaga aagaagacag acgttcactt aagcgtctta tatcgaatta
      421 caatttgcaa atcagtaact tgaatgcctt tacactatat gctattcaag acatttatca
      481 tccctcgtgg attgaagata agaccacttt tgctcaatta cgtattgaac acacgatcaa
      541 ttgtataatg ctggcaaagg atgtcggggc gaagaacctt tctactgaac caggagggcc
      601 ggtcgatgga cgaattgata gaaaaaaact agaaaagctt tttgttagta atttgagcaa
      661 ggtgacagag gttgcagaaa gggaaggcgt caacatcctg gttgaaccgg agcctaatat
      721 gctaatagaa cgctcagaac aatttctaaa ttttataaag agaattcgtt cagaagtcgt
      781 acgacttaat tttgatatag ggcatttttt ttgtgtcaag gaggatcctg ctaaaatagt
      841 ccataaatta tctgactata ttgagcattt tcatctagcc gatatcgcaa agagccgagt
      901 gcacgatcac ttaatcccgg gcaagggtgc tatcgacttt cgatctgtat tcaaagcaat
      961 agatgaaatt ggatacaacg gattcgtaac ggtggagctt tatccgtatc aggacgatcc
     1021 tatttacgca gcttcga
//
LOCUS       DATLQL010000288         1361 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2200138, whole genome shotgun sequence.
ACCESSION   DATLQL010000288 DATLQL010000000
VERSION     DATLQL010000288.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1361)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1361)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1361
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2200138"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..1308)
                     /locus_tag="VNB68_03050"
                     /pseudo
     CDS             complement(1..1308)
                     /locus_tag="VNB68_03050"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent succinate-semialdehyde
                     dehydrogenase"
BASE COUNT          350 a          317 c          196 g          498 t
ORIGIN      
        1 tcttccaaag ccactcttct taactcctcc aaatggaact ctaggatcag aagctactac
       61 attattgaca gatactatac ctgattctac gctacttgac aatttttctg ccttatcaag
      121 gtcttgagtc catatacttg ctccaagacc atactctgaa ttgttagcaa gttctatagc
      181 ttcaacttca tcatcagcta caataattgg agcaactgga ccaaatacct cctcctgtgc
      241 tatagatatt tttgggttaa cattcctgag aaccgttggt ttatagaagt aacctttttt
      301 tcctatctgt tctcctcctg tgagtacttt agcaccttct ttaactgact ctttaacctg
      361 agaatctatt ttctttaagc cactagcgtt tactagaggt cctatatctg tatcgtctga
      421 cagaggatct cccaccttaa gtctctctgt tttttgaaca aacttttcaa taaattcgtt
      481 tgctacattc tttactacaa taaaccgctt tgatgctata cagctctgac cacaattaat
      541 aaagcgcccc tttattgctc cattggatgc tttctcaata tcggcatctt cgcacactat
      601 aaagggatcg ctacctccca actcaagcac ggttttcttt atttgtgatg tagctctttg
      661 tgcaactttt gcacctactg gaacgcttcc agtgaatgtt atagcattaa catctgaatc
      721 gatcagttac tcagcaatac tagactcgcc tactagagtt tgaaacactc catctggtaa
      781 gccggctcta ttgaaggctt tctctatttc aattccacac tgcatagtag cactagctgg
      841 ttttaataca attgtattgc caatcattaa ggaaggcgct gcaaatctta atgcttgcca
      901 gtaaggaaaa ttccatggca ttatgctacc tattacccct ataggctgaa attttattac
      961 agttttccta gcgtcagtat taacaacttc atctgttgag aaaatctgtc cattatcagc
     1021 ataatattct attacccaag cacatttttc aacttcagat ctggcttcct ttatcggctt
     1081 tcccatttca tttgtggctg tccttgcaag gctctcctta tcttttctta attcattagc
     1141 aaaatcatga agcagatcgg ttctcttgtt agcatttttt ttccaatctt gaaatgtatt
     1201 ttgtgccttc tttactttgt catctatctg ctctttagtc attatttcat attcctggac
     1261 aatctcttct gtcgaaggat ttactgtctt tattctatta ttactcaagg atttattacg
     1321 cctctaccta aaattttgcc ctgttttaac attgttaatg c
//
LOCUS       DATLQL010000289         1453 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_603556, whole genome shotgun sequence.
ACCESSION   DATLQL010000289 DATLQL010000000
VERSION     DATLQL010000289.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1453)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1453)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1453
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_603556"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..720)
                     /locus_tag="VNB68_03055"
     CDS             complement(<1..720)
                     /locus_tag="VNB68_03055"
                     /inference="COORDINATES: protein motif:HMM:NF018455.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase domain-containing protein"
                     /protein_id="HVD36358.1"
                     /translation="MEINNNNNNYRISSNPQIESDNDEDPMVQIPGIFDLTGKNNIPP
                     SLFLLVGSAGTGKSMYCRQFIMDGILRSDYCIYISPSMTEKKYRSLFPKLEAVALNRS
                     SKFINPYLRIDTRNIAKNSNDTADDLDKLKLTLAEIHEILVIQKRENDQHNSSSIHGH
                     LENSKNKDLSSSSSSSSKGISIRVVVDSLTQFFVLFGESAVLKFIGELSLLLKEFEAS
                     AIFTLTGSLTSPNSLTNAVSSM"
     gene            complement(731..>1453)
                     /locus_tag="VNB68_03060"
     CDS             complement(731..>1453)
                     /locus_tag="VNB68_03060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36359.1"
                     /translation="VDLTSIVVGNSYDNNNNSSSSSSSTPSSAHTSSANGKLWLGFSN
                     PKKEEIYKLEGGKQEKVQFLRRFIVMREQLFSNFKADYVIVDTSPGIRYWSINALAIA
                     DVLYLTLKSGDLDITGTKKMVSEIYSSFTKFGAKPYLILNKVAGYCVPHPTIQPSMQP
                     IEHSSGTLSTSSIVVQQEQEIESSMDSLSHETGISVISAMPCYCDIQFSRKEYLTVLR
                     DPQHLFSKKMEDLAQQSQIQML"
BASE COUNT          412 a          279 c          280 g          482 t
ORIGIN      
        1 catggagctt acagcgttag tcaatgaatt aggcgatgtg aggctgccag tcaatgtaaa
       61 gattgcactc gcctcaaact cctttagaag taaagaaagt tcaccgataa actttagaac
      121 agcgctttcg ccaaagagta caaaaaactg tgttaaagaa tctactacta cacgtatgga
      181 tatgcccttg ctggaggatg atgatgatga tgataaatct ttatttttac tattttccaa
      241 gtgaccatgg atactactac tattatgttg gtcattttcc cttttttgga tgacaagaat
      301 ttcatgaatt tctgcaagtg tcagtttgag tttgtctaga tcatcagccg tatcattact
      361 atttttagcg atattgcgtg tgtctatacg taaatatggg ttgatgaatt ttgaggacct
      421 attgagcgct actgcttcta actttgggaa taaagatcta tacttctttt cagtcatact
      481 cgggctgata taaatgcagt aatctgagcg tagtattcca tccataatga actgtctgca
      541 gtacatgctt tttccagtac ctgctgatcc aacaagtaag aataggctag ggggaatatt
      601 gtttttccca gtcagatcaa aaattccagg aatctgaacc atcggatctt catcgttgtc
      661 agattctatc tgcgggttgc tgctgattct ataattgtta ttgttattat taatctccat
      721 ctcgatgcaa tcacaacatt tgtatctggc tttgctgcgc gagatcctcc attttctttg
      781 agaagaggtg ctgaggatct cttaggactg tcaaatactc tttcctgctg aactgaatgt
      841 cacaatagca tggcattgcc gaaattacac tgattcctgt ttcatgtgag agactatcca
      901 tactgctctc gatttcctgc tcttgttgaa ctacaatact tgaagttgat aacgttccac
      961 ttgaatgttc aattggttgc atagatggtt gaatagttgg atgaggaaca caataacccg
     1021 cgactttgtt tagtatgaga taaggtttag ctccaaattt tgtaaaggat gaatatatct
     1081 cgctaaccat cttttttgtt cctgtgatat cgaggtcgcc tgacttaaga gtaagataca
     1141 acacatcggc tattgcgaga gcatttatag accaatacct gataccgggg ctagtgtcaa
     1201 caattacgta atcggcttta aaatttgaaa agagctgctc acgcatgact atgaatctgc
     1261 gaagaaattg taccttctcc tgttttcctc cctcgagttt gtatatttct tcctttttcg
     1321 gattgctaaa accaagccat agcttgccat tagcagaaga agtatgagct gaagaaggag
     1381 tactactact actactacta ctattattat tattatcata gctattccct acaacaattg
     1441 atgtaagatc aac
//
LOCUS       DATLQL010000290         2399 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_247777, whole genome shotgun sequence.
ACCESSION   DATLQL010000290 DATLQL010000000
VERSION     DATLQL010000290.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2399)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2399)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2399
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247777"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            482..1819
                     /gene="carA"
                     /locus_tag="VNB68_03065"
     CDS             482..1819
                     /gene="carA"
                     /locus_tag="VNB68_03065"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005951 - carbamoyl-phosphate synthase
                     complex [Evidence IEA];
                     GO_function: GO:0004088 - carbamoyl-phosphate synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HVD36360.1"
                     /translation="MLEDGSVFVGIGFGYPSTVSGELVFNTGMVGYTETLTDPSYRGQ
                     ILCLTYPLIGNYGVPSRKIEDEFGFAKYFESDKVQIKGLVVHDLSDVASHWNSVMTLD
                     QWLYEEKTPGIYGIDTRELTKKLRVHGVMTCALVVSDSQKEPNGYPSLSSSYSFDPVL
                     SDLIKNNRYGTQNFLPEVSVTEPHEYGSNKNSRHLIVLLDTGTKYSIIRNILKNGYNV
                     ISLPWNSSYEKIISYEPKGVVISNGPGDPKLCKSTIETAASLIKSSIPTLGICLGNQI
                     LALAGGADTYKLKFGHRGQNKPCTDIRSNQTYVTSQNHGYGIDPTSLSKTGFRVWFVN
                     ADDGTIEGIEHKSKPILGVQFHPEASPGPYDCLFVFDRFRNVIDQFTQSKKEIPRESA
                     STRSLTSLSSSASSNSVTLYRPYTPASSQNILRTKKKKTAIHRKIKRRKIAKK"
     gene            2028..>2399
                     /locus_tag="VNB68_03070"
     CDS             2028..>2399
                     /locus_tag="VNB68_03070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl phosphate synthase large subunit"
                     /protein_id="HVD36361.1"
                     /translation="MLPVNGYYIKQIIEKELPDSIMLGFGGQTALNCGASLHDEGILD
                     KYKIQVLGTPINSIKITEDREQFKNAMVKSNVPVLESSPAYNIREALDVARKIGYPVI
                     IRVAYTLGGKGGGVAHNEYELQ"
BASE COUNT          817 a          437 c          503 g          642 t
ORIGIN      
        1 aaccaaaagg gtgtatctaa tgaatcctat gaaatcccaa atagggctgc ccaataccag
       61 ctcagttgtg atagacgtta caggaagcgg gtagtcagga aaaaattgct gtaatgatag
      121 tcgtcttggt gatggctgaa acgaattatg tgatcctgag tattcttgtg agtggctgtt
      181 ccgattagac tcacaaatag tgtcctcaaa aactaagtaa cacaaataga ggagctaccg
      241 ggcagtcctg atccgttgat agtttcaaaa tcttggtttg cccctctcta aaaagagcaa
      301 ataggaatta cgatattagc atcatagttt attattagtt cagttcagta attcttatca
      361 gagtctggta tagtcatcac aaaactgtag agcaaaactt aaatttgctt tcttgaaaag
      421 tcgttaaggg tcgaaaattc caacacttca gcggacatat tctggatata gagcaaaaat
      481 aatgttagaa gacggaagcg tttttgttgg catcggtttt gggtacccga gtactgtttc
      541 aggggaactc gtttttaaca caggtatggt aggatacacc gaaacgctaa cagacccatc
      601 atatagaggc cagatattat gtttaacata tccactaatt ggaaactatg gtgtgccgag
      661 tagaaaaatc gaagatgaat ttggatttgc aaaatacttt gaatcggaca aggttcagat
      721 caaaggttta gtagttcatg acttatcaga tgtggctagt cattggaata gcgtaatgac
      781 gctagatcaa tggttatatg aagaaaaaac ccccggtata tatggaatag acactaggga
      841 actcaccaag aagcttcggg ttcatggagt tatgacgtgt gcattggtgg tctccgactc
      901 ccaaaaagag cccaacggtt atccatctct ttcctcttct tattcctttg atccagtact
      961 ttcagacctg attaaaaata atcgatatgg tactcaaaac tttcttccgg aagtctctgt
     1021 gactgaacca catgagtacg gaagcaacaa gaacagtcgt catcttatcg ttttactaga
     1081 tacggggaca aaatacagca tcatacgtaa cattcttaag aatggctaca acgttatttc
     1141 tcttccttgg aattcgtcgt atgaaaaaat aatctcttac gaaccgaaag gcgttgttat
     1201 tagtaatgga ccgggtgatc ccaagttatg caagagtacg attgaaacgg cagcaagcct
     1261 aatcaaatca tcaatcccta cgcttggaat ttgccttgga aatcaaatac ttgctcttgc
     1321 tggtggagct gatacgtaca agttaaaatt tggtcacagg ggacagaaca aaccatgtac
     1381 agatatacga agtaatcaaa cctatgttac aagccagaat cacggctatg gcattgatcc
     1441 aacgagcctt agtaaaaccg gttttagggt atggtttgta aatgcggatg acgggactat
     1501 agaaggaatt gagcacaagt ctaaaccaat attaggagta caatttcatc cagaagcatc
     1561 accgggaccc tatgattgtc tatttgtttt tgatagattt agaaatgtta tcgatcagtt
     1621 tacgcagtca aaaaaagaaa taccaagaga gtcagcatca acacgatcat taacaagttt
     1681 gtcctcttca gcttcttcga actctgttac tctctatagg ccttatactc ctgcatcctc
     1741 gcaaaatatc ttaaggacca aaaagaagaa aacagctatt cacagaaaaa taaagaggag
     1801 gaaaattgcc aaaaaatgag acgataagaa cggtccttgt tctaggcagt ggggcaatca
     1861 aaatcggaga agcaggcgag agttaggaca aacatcctgg ccgctaattt gactactccg
     1921 gttcacaatg cctcaaagct ttagccgagg aaggaattaa gaccatactg gtaaacccta
     1981 atatagcaac gatccaaaca gatacgagat tcgcaaataa ggtatatttg ttaccagtaa
     2041 atggatatta tattaaacaa ataatagaaa aagaacttcc tgattcaata atgttaggtt
     2101 ttggtggaca aaccgcatta aattgtggag catctttaca cgatgaagga attctagaca
     2161 aatataaaat acaagtattg ggtacgccca taaatagtat aaagattact gaagacagag
     2221 agcaatttaa aaacgccatg gtaaagagta acgttccagt gctagagagt tctcctgcat
     2281 ataatataag agaagccctg gatgttgcaa gaaaaatagg atacccagtg ataatcaggg
     2341 ttgcatacac acttggtggc aagggaggag gagttgcaca taatgaatat gaacttcaa
//
LOCUS       DATLQL010000291         1138 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_427126, whole genome shotgun sequence.
ACCESSION   DATLQL010000291 DATLQL010000000
VERSION     DATLQL010000291.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1138)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1138)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1138
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_427126"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(121..339)
                     /locus_tag="VNB68_03075"
     CDS             complement(121..339)
                     /locus_tag="VNB68_03075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36362.1"
                     /translation="MSEEEDQDRMETLHDDALYSLDLSESNKAINALASFRERALPSL
                     QDLVECSTDSEVRKYAMEAIRRVKQELM"
     gene            complement(346..>1138)
                     /gene="tfb"
                     /locus_tag="VNB68_03080"
     CDS             complement(346..>1138)
                     /gene="tfb"
                     /locus_tag="VNB68_03080"
                     /inference="COORDINATES: protein motif:HMM:NF012600.4"
                     /note="stabilizes TBP binding to an archaeal box-A
                     promoter; responsible for recruiting RNA polymerase II to
                     the pre-initiation complex; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transcription initiation factor IIB"
                     /protein_id="HVD36363.1"
                     /translation="IGTPSSLARHDMGLYTIIGETNKDASGHNLSAPVLSTISRLRVW
                     DNRTQLDPSSYSPSHRNFQTTFNNLARSKDKLGLSYAIIEKTAYIYRKAHKRGLIRGR
                     SMHALLAACVYIACREMENPRTLRDLATIMNIKRKDITRSYRMLVLELDFNIPLIDPM
                     KCLIKISNNLELSEKTKRKAMQIMDNVTRSRISAGKNPMGLAASILYLSCLFNGDQKN
                     QIAFAQAAGVTGLTIRNICRILKNHFVSTHLEKNSPGYTKGIQRK"
BASE COUNT          316 a          231 c          187 g          404 t
ORIGIN      
        1 ttatgttgtt aattcgtcct tctattggac aaaatattct aaacataaag attcaatata
       61 tggagcactt tattccttta ttctttaact caaattatat ccttggcata acccacaaaa
      121 ctacattagt tcttgtttaa ctcttctaat agcttccata gcatactttc taacttcact
      181 atccgtagaa cattcaacga gatcttgaag agatggtaag gctctctctc ggaagctagc
      241 caatgcattg attgctttat tgctttcact caggtctagt gagtaaagtg catcatcatg
      301 tagtgtctcc atccgatcct gatcttcttc ttctgacaac ctatactact tcctctgtat
      361 ccctttagta tagccggggc tatttttctc taaatgtgtt gaaacaaaat gattttttag
      421 aattctgcat atattccgga tggtaagacc tgtcactcct gctgcttgag caaaagcaat
      481 ctggtttttc tgatctccgt taaacaaaca tgacaggtaa agaattgaag ctgcaagacc
      541 cataggattt tttcctgcag atattctact tcttgtcacg ttatccatta tctgcatcgc
      601 tttacgtttt gtcttttcgc tcagctctag attgttagag attttgatga gacatttcat
      661 aggatcaatc aatggaatat taaagtcaag ttctaatact agcatcctgt agcttcgggt
      721 aatatcttta cgtttaatat tcatgatcgt ggctaaatcc cttagcgtcc taggattttc
      781 catttctctg catgcaatat aaacacaagc agccaataga gcatgcatcg atcttccgcg
      841 tatcaatcct cgtttatgcg cttttctata aatgtatgca gtcttttcta ttattgcata
      901 cgataaacca agtttatcct ttgatctagc aagattattg aatgtcgtct gaaaatttct
      961 atgagaaggc gaataggatg aaggatctaa ttgtgttcta ttgtcccaca ctcttaatct
     1021 tgagatagta gaaagcacgg gtgcacttaa attatgtcca ctagcatctt tatttgtctc
     1081 tccaataatt gtataaagtc ccatgtcatg acgagctaga gagcttggag tgcctatt
//
LOCUS       DATLQL010000292         1666 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_782883, whole genome shotgun sequence.
ACCESSION   DATLQL010000292 DATLQL010000000
VERSION     DATLQL010000292.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1666)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1666)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1666
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_782883"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1666
                     /locus_tag="VNB68_03085"
     CDS             <1..>1666
                     /locus_tag="VNB68_03085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36364.1"
                     /translation="IAANSVAEFDTAILPSFSAGESLQNLNLQVSYTDATGETKSSDE
                     IVGFRVLPNLPEAGLSVNPNAVPQTTPNPTTSVEGNGANQVSPTNNDTGTISDSGLSV
                     TPSGLASRIVTKNNYYQGVSLAQNGKHSNPINNRMNLTISTGNNLTSTQSSESLIKKA
                     SLSDTSNGIDNDRSIVKQDNNTRRGQNNNIDDSITIIAGRESTLNFTITNNNRYPIVD
                     AVVSLDSQSTSIAISGPSKWNLERLDPGSHQFYSTTVFASTSIIGSPVSFEVGAQYIM
                     NGRARNDTFNIGAKVIGEINVDVSNIAINSIAGTPNLIGNLLNKGNTVALFTTIQLLS
                     PGNSTDQNQSLQNRHPNPTISQSSKYVNSQKSSGNGSSSRSSSALSGSGLVPVSTFPS
                     YLGDLDANSPLPFSIPLELKNNSSPGRYPISLRITYSDDLRADHALIINSSVDLTRPR
                     QRSGDNGDQNQSILGILIGKRNSVQIGGMSLPIPLLLIIMAVALALLILRRRRRLTAG
                     RIYAASRSSSKEDQFFLDGKGNKDQGTISTDTSQENERSKGSGTER"
BASE COUNT          546 a          356 c          318 g          446 t
ORIGIN      
        1 caatagccgc taactcagtt gcagaatttg atacagcaat tttgccgtca ttttcagcag
       61 gcgagtcgtt gcaaaacctt aatcttcaag tctcatacac tgatgccacc ggagaaacta
      121 aatcttcaga cgaaatagta ggttttcggg tactgcctaa tcttcctgaa gcaggccttt
      181 cagttaatcc caatgctgtc ccgcaaacta ctccaaatcc aactacaagc gttgaaggca
      241 acggtgctaa ccaggtttca cctactaata acgatactgg gactatttct gattcgggat
      301 taagtgtaac accatccggc ctggctagcc gcatagtcac aaagaataat tattatcaag
      361 gggtcagcct tgcccagaat gggaagcata gtaatcctat caataataga atgaatctta
      421 ccatttccac tggaaataac ctaacttcga cccagtccag tgaatcatta attaagaaag
      481 cgtctttatc tgatacttca aatgggatag acaatgatcg aagcattgtt aaacaagata
      541 acaacaccag gaggggccaa aataacaata tcgatgattc tataaccata attgcaggta
      601 gagagagtac cctaaacttt accattacga ataacaacag gtatcctata gtggatgcag
      661 tagtttcact ggattctcaa tcaacttcaa ttgcaatatc aggaccttct aaatggaacc
      721 ttgaaagatt agatccaggt tctcatcaat tctactcaac aacagtcttt gcgtctacgt
      781 cgataatagg tagtcccgtg tcattcgaag tgggcgcaca gtatatcatg aacgggagag
      841 caagaaacga cacatttaac ataggagcaa aagttattgg cgaaattaat gttgatgtga
      901 gtaatattgc tataaatagt atagctggca ctccaaatct gattggaaat ttattaaaca
      961 agggcaacac tgtggcatta tttaccacaa ttcaattgct ttctcccggt aactcaacag
     1021 atcagaatca gagtcttcaa aataggcatc ctaacccaac aatttcccaa tcgagtaaat
     1081 atgtgaattc gcaaaaatct tcaggaaatg gctcatcttc acgatcttca tccgctcttt
     1141 ctggtagcgg tcttgtgcct gtttctacgt ttccatcgta tcttggagac cttgatgcta
     1201 attctccttt accttttagt atcccattag aacttaaaaa caactcatcg ccagggagat
     1261 atccaatttc gcttagaatt acctatagtg acgatcttag agctgatcat gcactaataa
     1321 ttaatagctc agttgatctc acccgaccta gacagcgatc cggcgataac ggcgaccaaa
     1381 atcaaagtat cctaggtata ctgataggaa aacgaaattc agtacaaata ggtggaatgt
     1441 cgctgccaat cccattatta cttattataa tggccgtcgc tctagcgctc ctaattttaa
     1501 gaagaagaag gagattaact gctggaagga tttatgcagc gtcaagatca tcatcaaaag
     1561 aagaccagtt ctttctagat ggaaaaggaa ataaggacca gggcactata tctacagata
     1621 ctagtcagga aaatgagaga tccaagggct cggggactga gagaag
//
LOCUS       DATLQL010000293         1926 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_605430, whole genome shotgun sequence.
ACCESSION   DATLQL010000293 DATLQL010000000
VERSION     DATLQL010000293.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1926)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1926)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1926
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_605430"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1381)
                     /locus_tag="VNB68_03090"
     CDS             complement(<1..1381)
                     /locus_tag="VNB68_03090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HVD36365.1"
                     /translation="MSQSTLSLKVLEAYTRDVGRGVARIDYDSMDSLTASTGDVIEIR
                     GKRRTVAKCLPLYHSDEGKGIVRVDGLVRNNAGVAIGDTVIVRKIKAVPAEKVIVAPL
                     EAIPPIDERYLADALESVPLIKGDNVMVPYFGGRLTFQVIGVTPASDAVLVTQKTIFH
                     IAEKGETLRGVPQVTYEDIGGLKEEIQKVREMIELPLRHPEIFEKLGIEAPKGVLLYG
                     PPGTGKTLLAKAVANESNAHFISISGPEIMSKFYGESEARLREIFKEAKEKAPSIIFI
                     DEIDSIAPKREEVTGEVERRVVSQLLSLMDGLEARGKVIVIAATNRPNAIDPALRRPG
                     RFDREIEIKDPEKRGRLEILQIHTRNMPLDTDVEQDRIAAVTHGFVGADLEYLCKEAA
                     MKCLRRLLPELNLEDEKLSPEVLNKLIVTKADFDNAVKEVTPSAMREVYLESPDIPWS
                     AIGGLEGIKR"
     gene            1641..>1926
                     /gene="rpl2p"
                     /locus_tag="VNB68_03095"
     CDS             1641..>1926
                     /gene="rpl2p"
                     /locus_tag="VNB68_03095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018131.1"
                     /note="one of the primary rRNA-binding proteins; required
                     for association of the 30S and 50S subunits to form the
                     70S ribosome, for tRNA binding and peptide bond formation;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HVD36366.1"
                     /translation="MGKRPLVRRRGKGGKQFQSIKTGKIVPAKYPYLQSSELKIGSIV
                     YIVHERGRDAPLAKIQFDKEFSYLPAPDGMEVGEKIQIGNNVDFKPNNILA"
BASE COUNT          567 a          414 c          319 g          626 t
ORIGIN      
        1 cacgcttaat accctctaat ccgcctatcg cagaccaagg aatatctggt gattccaaat
       61 atacttctct cattgcagaa ggcgtaacct cctttacagc attatcaaag tcagctttag
      121 tgactatgag tttattcaag acttcaggag atagcttctc atcttccaaa tttaattcag
      181 gtaacaatct tctcagacat ttcatggcag cttctttaca aagatattca agatcagccc
      241 caacaaaacc atgtgttacg gcagcaattc tatcttgttc tacatcggta tcaagaggca
      301 tatttcttgt atgaatctgc aatatttcca gccttccacg cttttctggg tctttgatct
      361 caatctctct atcgaacctt cctggtcttc taagagctgg gtctatagca tttggacgat
      421 ttgttgccgc aattacaata accttacctc ttgcctcaag tccatccatg agggataata
      481 attgagagac gactcttctt tcgacctcac cagtaacttc ctctcttttg ggagcaattg
      541 aatctatttc gtcgataaat attatggaag gagccttttc ttttgcttcc ttgaaaattt
      601 ctcttaatcg agcttcagat tcgccataaa atttactcat aatttctggt ccagaaatac
      661 ttataaaatg agcattactt tcattcgcaa ccgcttttgc aagaagggtt tttcctgttc
      721 caggaggccc atacaatagc acacctttag gggcttcaat gcctaatttt tcaaagattt
      781 cagggtgtct caatggcagc tctatcattt ctctaacttt ttgaatttct tcctttagcc
      841 ctccaatgtc ttcgtatgtt acctgaggaa cacctctaag ggtttcacct ttttctgcga
      901 tatgaaatat agttttctga gtcaccaata ctgcatctga tgctggtgtt actcctatta
      961 cttgaaaggt aagtctaccg ccaaaataag gcaccatgac attatctcct ttaatcaatg
     1021 gtacactttc aagtgcatca gcaaggtaac gttcgtcaat gggtggtata gcctctaacg
     1081 gtgcaactat taccttttct gcaggaacag cttttatctt tctcacaatt acggtatctc
     1141 caatggcaac gcctgcgttg tttcgaacta ggccatctac tcttacaatt cctttgccct
     1201 catcagaatg ataaagtggt aaacattttg cgacagtcct tctttttcct cgaatttcta
     1261 taacgtcgcc cgtagatgca gttaacgagt ccattgaatc ataatcgatt ctagccactc
     1321 cacgacctac gtctcgagta tatgcttcga gaaccttcag cgagagagta ctttgactca
     1381 caatagcaag tactatcgta cctatcttta tacctttgtt gaggattact caccgcaaat
     1441 cctggtaagc caaacatcag ataaaagtag tttaatttcc aacattatcc atattttgta
     1501 aaaaaaactt gctctatgaa tcttattatt acgacaaaaa atgagttgat tgtaggatta
     1561 tactaaatat acagattgca attttcactc taccaaaaga ttaaaatcat gatgatattc
     1621 aataatttga ttgggctgta ttgggcaaaa gacctttagt acgtagaagg ggaaaaggag
     1681 ggaaacaatt tcagtccatt aaaactggaa aaattgtacc cgccaaatac ccttatttac
     1741 aatcatctga actaaaaatt ggttcaatag tttacattgt tcacgaaagg ggaagagatg
     1801 cacccttggc taaaattcaa tttgataagg aatttagcta tttgcctgct cctgatggaa
     1861 tggaagttgg agaaaaaatc caaattggaa ataatgttga ttttaaacca aataatattt
     1921 tagcat
//
LOCUS       DATLQL010000294         1107 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_249669, whole genome shotgun sequence.
ACCESSION   DATLQL010000294 DATLQL010000000
VERSION     DATLQL010000294.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1107)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1107)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1107
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_249669"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            77..325
                     /locus_tag="VNB68_03100"
     CDS             77..325
                     /locus_tag="VNB68_03100"
                     /inference="COORDINATES: protein motif:HMM:NF020899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KEOPS complex subunit Pcc1"
                     /protein_id="HVD36367.1"
                     /translation="MSLEVTVIVEITFSRKSEMKAIMKALIPDNVNFPKGLSMDMSSI
                     ENTLLIEFSCTTGLETLVNTIDEVLDHVLLAKKVICDA"
     gene            318..>1107
                     /locus_tag="VNB68_03105"
     CDS             318..>1107
                     /locus_tag="VNB68_03105"
                     /inference="COORDINATES: protein motif:HMM:NF014458.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HVD36368.1"
                     /translation="MLDSKLLKENPGFIEDMLRKRKLDFPLDQVVALDKRRRELIAEI
                     EEYKHKRNILAHSISTSKKAKKEVTSEIEAMKVIGDKIFALEQEKIKVDASFRGLMMR
                     LPNLLDDSVPIGNDENDNVVIKYNGVVKKHDFPIADHIDIANNLDLIDIARAAKISGA
                     RFYFLKNDLVRLNQALIHFALAFLQKKGYVLLQPPYMIRKEAIEGAAILEDLDQVIYK
                     IDSEDLYMIGTSEHAMASMFMDEILEGSKMPFRFGGISPCFRKEA"
BASE COUNT          376 a          175 c          243 g          313 t
ORIGIN      
        1 tgtaggattc ctgccgtaag gttagaagag ttcatctcgc ttgtgaagag caaattggta
       61 aatagtaaag ccgaaaatgt cccttgaagt tactgttatt gtagagataa ccttctctag
      121 aaaatctgag atgaaagcca ttatgaaggc attaatacca gacaacgtta actttccgaa
      181 aggcttatcc atggatatgt cttcaataga gaatacttta ctcattgaat tttcgtgcac
      241 tactggactt gaaacacttg tgaatactat cgatgaagta ttggatcacg tcttgctggc
      301 aaaaaaagtg atttgtgatg cttgattcaa aactgttgaa agagaatcct ggctttatcg
      361 aggacatgtt aagaaaaaga aagttagatt ttccgttaga tcaggtggtg gcgttagata
      421 aaagacggcg agaactaatt gccgagatag aagaatataa acataagaga aatatccttg
      481 cccactcgat ctccacctca aaaaaggcaa aaaaggaagt tacctcagaa atcgaagcaa
      541 tgaaagtgat tggtgacaag atttttgcct tggaacaaga aaaaatcaaa gtcgatgcat
      601 cgtttagagg cttaatgatg cgtcttccta atctccttga tgatagtgtt ccaattggaa
      661 atgatgaaaa cgacaatgtt gtaattaaat acaatggagt ggtcaaaaag catgattttc
      721 caatagcgga tcatatagat atcgctaata atctggattt aatagatatt gcaagagcag
      781 caaaaatatc aggtgccaga ttttattttt taaaaaatga tcttgtacgg ttgaatcaag
      841 ctttaattca ttttgcactg gcttttctgc agaagaaggg atatgtgctt cttcaacccc
      901 cttatatgat aagaaaagaa gctatagaag gagcagcgat tcttgaagat ctggaccaag
      961 taatttataa aattgatagt gaggacctct atatgatagg gacctctgag cacgcaatgg
     1021 catctatgtt catggatgag atcctggagg gcagcaagat gcctttcagg ttcggaggga
     1081 tcagcccgtg ttttagaaag gaagcag
//
LOCUS       DATLQL010000295         1274 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_428548, whole genome shotgun sequence.
ACCESSION   DATLQL010000295 DATLQL010000000
VERSION     DATLQL010000295.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1274)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1274)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1274
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_428548"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(110..412)
                     /locus_tag="VNB68_03110"
     CDS             complement(110..412)
                     /locus_tag="VNB68_03110"
                     /inference="COORDINATES: protein motif:HMM:NF021039.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CbtA family protein"
                     /protein_id="HVD36369.1"
                     /translation="MVGYLAISGFTALALALAWNRLQVKSKKIIFLLNYAAAMIAEYL
                     GMPSNPDKISISMELIQTFRVLTALTIGMFWGILAILFGSLCDRFIPTQNRAIAII"
     gene            477..1118
                     /locus_tag="VNB68_03115"
     CDS             477..1118
                     /locus_tag="VNB68_03115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4443 domain-containing protein"
                     /protein_id="HVD36370.1"
                     /translation="MHTYVKTLQKVADRYAPSRVLSFDMVHVFKTLQLIQENGHVSRE
                     KLCEDLGLGEGTIKTLVRHLKMQNLIESTNAGTTMTKKGNSFFSELLSSIPSEISLSK
                     CAITLGKFNYAVLVKQMSSIIKDGIAQRDAAIRMGASGATTLLFKDNKFLIPQTEFDS
                     LKDEHQLSEQMIKNLHPQDGDVIIIGSDNYSRMKAEFAAKSAALITIMNHEKH"
BASE COUNT          441 a          220 c          252 g          361 t
ORIGIN      
        1 tagagatatt ggatgtatca ttaggtgtac aattgtattc cgtgcacttc aaaggattaa
       61 tcgagaattt ttaaaagtga ttttagtaat gactttgtgg attgcggtgt catatgattg
      121 caatcgctct attctgtgta ggtatgaatc tatcgcacaa tgagccgaat aaaatagcca
      181 agatccccca aaacatacct atggttagtg ctgtcaaaac cctgaaagtc tgaattagtt
      241 ccatcgatat gcttattttg tccgggttgg aaggcattcc aagatattct gcgatcattg
      301 cagcagcgta gttcaacagg aatatgattt tcttggattt cacctgcagt ctgttccatg
      361 caagtgctaa tgcaagtgcg gtgaaaccgg aaatagctaa atatccaacc aaacgacgga
      421 catagaggag tgcctaaaaa tacacataaa tctgtagtac gcgtagatct ttagtgatgc
      481 acacatatgt caaaacactt caaaaggttg cggacagata cgcaccaagt agggtgctat
      541 cctttgacat ggtgcacgtg ttcaagacat tgcagctaat tcaagagaat ggacatgtta
      601 gcagagagaa actatgtgag gacttgggac taggagaagg aactattaag acattagtga
      661 gacacctcaa gatgcagaac cttatagaat ctactaatgc aggcacgaca atgactaaaa
      721 agggaaactc atttttttca gaactgttat cttcaatccc atctgaaatc agtctatcca
      781 aatgtgctat tacgttgggg aaattcaact atgcagtact tgtaaaacaa atgagttcta
      841 taatcaaaga cggaatagca caaagagacg ctgcaattag aatgggagca tctggtgcaa
      901 ctaccctttt gttcaaggac aacaaatttc ttattccaca aacagaattt gattcattaa
      961 aagatgaaca tcagttatct gaacagatga ttaaaaatct tcatccccaa gatggagatg
     1021 tgataataat tggaagtgat aattattcaa gaatgaaagc cgagtttgct gcaaagagtg
     1081 ctgctttgat aaccattatg aatcatgaaa agcactagtc actaaaaaat ctacatcatt
     1141 acatcattgc aacaaataac aatgatagat ttgatcaagg tttgcttgac ttaccaatac
     1201 tagatttatt tacagatctt gacttgatta atatatgaaa aaacgattgt gttcctgtag
     1261 tgaagaatca agaa
//
LOCUS       DATLQL010000296         1661 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_429287, whole genome shotgun sequence.
ACCESSION   DATLQL010000296 DATLQL010000000
VERSION     DATLQL010000296.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1661)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1661)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1661
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_429287"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            186..875
                     /locus_tag="VNB68_03120"
     CDS             186..875
                     /locus_tag="VNB68_03120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly factor SBDS"
                     /protein_id="HVD36371.1"
                     /translation="MVDAKYSTVRLSIDGDKFEILVKPDPALEYKTGKRTDFSSILIS
                     EEIYSDANKGSRAASEKLTKHFKTKDTNVIAKEILSRGELALTTDQRRRMVEEKKKQI
                     VQFISRNFVDPRTHIPHPPLRIESAINDVRIVIDPYRRPEDQAKQVIEALRKILPLKS
                     EVSQLTITVPAQFSAQSYSIMKTSGGFKNEEWLSDGSLRVVIEVNAGTKGTIIDRIGS
                     ATKGSAHITEA"
     gene            1012..>1661
                     /gene="rrp4"
                     /locus_tag="VNB68_03125"
     CDS             1012..>1661
                     /gene="rrp4"
                     /locus_tag="VNB68_03125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000178 - exosome (RNase complex)
                     [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exosome complex RNA-binding protein Rrp4"
                     /protein_id="HVD36372.1"
                     /translation="MQEIKRKYVIPGDKIVDGNFRPLMNVIRVGDSIISTRIGIAEAG
                     RDGIKVIPLSGVYIPRVNDIVIGKIIDRSSLSWDVDINSCFSAHLPAQDVFGRDFSPA
                     RDDMNRELATGDLITARIMAFDRTRDPMVTIQDRDLGKIPRGESLKISATRVPRLIGK
                     RGSMIQTIEQATQTRVLIGQNGIVVVTGRSPEGIELSVKAIKMVEDEAHTSNLTQR"
BASE COUNT          568 a          295 c          367 g          431 t
ORIGIN      
        1 aataggaaaa ggaaacgaaa tatctttttc ctctcttttg cttctctaga ttttctcccc
       61 ctttttatga tagatttgaa ttagatcaac gaacaagaat actcgctaat aagatagata
      121 acctccgtga actaatatca aattatgtac aaaatttatt acaaagagaa gacctgttac
      181 agctaatggt ggacgctaaa tatagcacag ttcgtctttc gatagatggc gataaatttg
      241 agattttggt gaagcccgat cctgcattgg aatacaagac gggtaaaaga actgacttct
      301 caagtatact gatttctgag gaaatatatt ctgacgctaa caaaggttca agagccgcta
      361 gcgaaaagtt gacaaaacat ttcaagacaa aagatacaaa cgtaattgca aaggagattc
      421 tttctcgagg cgagttggct cttactacag accagcgtcg gagaatggta gaagagaaaa
      481 aaaagcagat tgtacaattt atcagtagaa attttgtcga tcctaggaca cacatccctc
      541 atccgcccct gcgaattgaa tctgcaataa atgatgtcag aattgttatt gacccgtaca
      601 ggaggccaga agatcaggcc aagcaagtaa tcgaagctct gagaaaaata ttgcccctaa
      661 agtctgaggt ttctcaatta actattactg ttccggctca attttcggca cagtcataca
      721 gcataatgaa aacctcaggg ggttttaaaa atgaagaatg gctctctgac ggttccctca
      781 gagtagtaat agaggtaaat gcaggaacta aaggcacaat aatagacaga ataggatctg
      841 ctacgaaggg atctgcccat ataactgaag cttaaggctc ctgtttccta tgtatataag
      901 caaaacactc tgatgttgac acttagaata taagtccgat gttactgagc tcaaggagat
      961 agagtaaatg aaaagatcca tcgatactat gaggagttga tgaagtaaag ggtgcaagaa
     1021 attaaaagaa agtatgtaat ccctggcgat aaaattgttg atggcaattt taggccattg
     1081 atgaatgtaa ttagggttgg agattctatt atttcaacac gaattggaat tgcagaggct
     1141 ggaagagacg gcattaaggt tataccgttg tcaggagtct atattcctag agtaaatgat
     1201 atagtgattg gaaaaattat tgatcggtct tctctctcat gggatgtaga catcaattcc
     1261 tgtttctcgg ctcacctgcc tgcacaggat gtgtttggaa gggacttttc tcctgcccga
     1321 gacgatatga atagggagtt agcaacaggc gacctgatca cagcaagaat catggcattt
     1381 gatagaacaa gggatccgat ggttactatt caagatagag atttaggcaa aataccacga
     1441 ggtgaatcac tgaaaatctc tgcaactaga gtccctaggc taattggaaa gcggggctct
     1501 atgatccaaa caatcgagca ggcaacacaa acgagggtcc taatagggca aaacggaatc
     1561 gttgtggtaa ccggaagaag cccggaagga attgaactat cagtaaaagc gataaaaatg
     1621 gtcgaggatg aagctcatac ttctaactta acacaaagga t
//
LOCUS       DATLQL010000297         1143 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_250955, whole genome shotgun sequence.
ACCESSION   DATLQL010000297 DATLQL010000000
VERSION     DATLQL010000297.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1143)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1143)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1143
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_250955"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1143)
                     /locus_tag="VNB68_03130"
     CDS             complement(<1..>1143)
                     /locus_tag="VNB68_03130"
                     /inference="COORDINATES: protein motif:HMM:NF012361.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HVD36373.1"
                     /translation="LNSKKQKYFITVAYPYPNSPQHVGHGRTYTLADVHARYMRMKGY
                     NVLFPMAFHYTGTPIISMSQRVLGKDMELLNTFRTIYNLSDEVISTFVIPVEIASFFH
                     KEIKQGMKEMGYSIDWRREFTTIDKGYSKFISWQFRLLRKKGLVLQGSHPVGWCPKDH
                     NPVSQHDTMGDVEPDFLEYTLIKFSTEDGYILPTATLRPETIFGVTNLWINPDIVYVK
                     IVIDDEKWIVTQEAAKKLEFLNHNVKITTRIKGSELVGKLAKHSFVNVGIPIYPASFV
                     DPDNGTGIVMSVPGHAPYDYQAIEDLKKRVDLQGKYHMDFTVSPIKIIQSDNYQGNSN
                     VTPAEIITKEYAINDQQDPKLEEATNKLYGDEFYSGVLLPITGRFSG"
BASE COUNT          324 a          233 c          203 g          383 t
ORIGIN      
        1 tccgctaaag cgaccagtaa ttggtaaaag taccccgcta taaaattcat caccatataa
       61 cttgttggtc gcttcctcaa gctttggatc ttgttgatcg ttaatagcat attcctttgt
      121 tataatctct gctggcgtaa catttgaatt cccttgatag ttatcgcttt gtattatctt
      181 tattggagat acagtgaaat ccatgtgata tttgccttgt aagtcaactc tcttcttcaa
      241 gtcttctata gcctgataat cataaggagc gtgaccggga accgacatca caatgccggt
      301 accgttgtca ggatcgacaa atgaagcagg atatatcgga atgccgacgt ttacaaaact
      361 atgtttagct aacttgccca caagctcgct tccttttatt ctagtcgtta tcttgacatt
      421 gtgatttaaa aattctaatt tcttcgctgc ttcttgagtt acaatccatt tctcgtcatc
      481 aattactatc ttaacataaa caatatctgg atttatccaa aggtttgtta ctccaaagat
      541 ggtttctggt cttaatgtgg cagtcggaag gatatatcca tcctcagtac taaatttgat
      601 tagtgtgtat tcaagaaagt ctggctctac gtcgcccatc gtgtcgtgtt gactcacagg
      661 attatgatcc ttaggacacc aacctacagg atgcgatcct tgtagaacaa gacccttttt
      721 gcgaagaagt cgaaattgcc aagaaatgaa tttagaatac cctttatcta ttgtcgtaaa
      781 ttctcttcgc caatcaatgg aataacccat ctccttcatg ccttgtttta tttccttgtg
      841 aaaaaaacta gcaatttcta ctggaattac aaaagtagat atcacctcat cagacaaatt
      901 ataaattgtg cggaatgtgt taagcagttc catgtctttt ccaagaactc tctgagacat
      961 tgaaataatt ggagttcctg tatagtggaa tgccattgga aacaatacat tatatccttt
     1021 cattctcatg tacctggcat gaacgtcagc taacgtgtag gttcttccat gacctacatg
     1081 ctgtggtgaa ttaggatacg ggtaggccac agttatgaaa tacttctgtt tctttgaatt
     1141 taa
//
LOCUS       DATLQL010000298         2131 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_251457, whole genome shotgun sequence.
ACCESSION   DATLQL010000298 DATLQL010000000
VERSION     DATLQL010000298.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2131)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2131)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2131
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_251457"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(232..927)
                     /locus_tag="VNB68_03135"
     CDS             complement(232..927)
                     /locus_tag="VNB68_03135"
                     /inference="COORDINATES: protein motif:HMM:NF012452.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36374.1"
                     /translation="MSDNSFTNVGFSGNNRYSSYYGPGGRLVFVDSALEAVNKGSTTI
                     GIKTPNFAIISSQIKPTRPLVEPSEKIFSIDDHVGATGSGYIGDILQLIDEIRLYAQK
                     HSVSFETPIEIGSLARHISSYLHTFTIYSVRPQAASILIAGKDQTGIQLYQIDPSGTY
                     FKGSAFAIGQSSEIALEVIQQEYKENMSVEQAIQLSNNAIEKALAEKPLIATGLISFV
                     DGRFKKLEAPIVS"
     gene            complement(935..1516)
                     /locus_tag="VNB68_03140"
     CDS             complement(935..1516)
                     /locus_tag="VNB68_03140"
                     /inference="COORDINATES: protein motif:HMM:NF012452.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proteasome subunit beta"
                     /protein_id="HVD36375.1"
                     /translation="MTTIVGIKTKEGVVLGSDRRASKGFFIGSKITQKIAKVDDTLAI
                     AIAGQLSDAEYLIRVAKAERKLLELRRGFPLTVKESSRLIANLAYSGLKSYQPYFVEL
                     LVAGVDDNGGHIYAADMSGAITTEDFASSGSGSPIAYGVLESVYHKNITNEEAKEIAT
                     KAVAAAMERDPGSGNGIDVLVIPNLVTVTASRR"
     gene            complement(1640..>2131)
                     /locus_tag="VNB68_03145"
     CDS             complement(1640..>2131)
                     /locus_tag="VNB68_03145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36376.1"
                     /translation="ALARLEELGLVEKSDAGYGLNKNAEVFTSSGKIVKPSPIFSKSS
                     INFQLLHASIPVQIEVEQILIGLHGKWFDKYRFVELKKTNNGYALKWVNEATSFELTL
                     IIIGNYCVIETNAISGESRLEAMFGASRIIKEITTILQRKLDDFSVSTIKIDEISLTE
                     HVN"
BASE COUNT          598 a          460 c          368 g          705 t
ORIGIN      
        1 tcgatatagc ttagagggac tttaaaacat tacttttaat gcgactttaa aaaaagctcg
       61 tatcatgttg cagatctcat gagtgtggat tttcttctag actataaaat tgtgaaaata
      121 tctgaaggac aatcatcaga caagggtgtc gtctcttctc aattagtaca catggtcgaa
      181 ccatgtccag aatgattacc ctccacaatg atagagtttg tttacgatgt attatgacac
      241 aattggcgcc tccaattttt taaacctacc atccacaaaa gagatcaaac ctgttgcgat
      301 caacggtttt tcagcaagtg ctttttcaat ggcattatta cttaattgaa ttgcctgttc
      361 aacactcata ttttctttat attcctgttg aattacttcg agagcaattt ctgaggattg
      421 tccgatagca aatgcagaac ctttgaaata agttccacta ggatcgatct ggtagagctg
      481 aattccagtt tgatctttgc cagctattag tatagacgct gcttgtggtc tgactgaata
      541 tattgtgaag gtatgaagat atgaacttat gtgtcttgcc aacgatccta tttctatcgg
      601 agtttcaaat gaaacgctat gtttttgtgc atacaatcta atctcatcga taagttgcaa
      661 gatatctcca atgtatcctg accctgtcgc accgacgtga tcatctattg agaatatctt
      721 ttcggatggt tctacgagtg gtctcgttgg ttttatttga ctagatatta tggcaaagtt
      781 tggtgtcttt attcctatgg tcgttgaccc tttattaacg gcctcaagtg cactatctac
      841 gaatactaac cttcccccgg gtccatagta tgacgagtat cgattatttc ccgaaaaacc
      901 tacgtttgta aagctattat ctgacaattc tatatcacct tctactcgcc gttactgtta
      961 ccaagttcgg aattacgagg acatcaattc cgttaccaga tccagggtca cgttccattg
     1021 ctgcggccac agcctttgta gcaatctctt tagcctcttc attggttatg ttcttatgat
     1081 aaacactttc aagcacacca tatgctatag gagagcctga acctgaagaa gcgaaatcct
     1141 cggtcgttat tgcgccactc atatctgcag cataaatatg tcctccatta tcatcgacac
     1201 cggcaacaag taattctaca aaatatggtt gatagctctt gagaccagag tatgctaaat
     1261 tcgcaattaa tctcgaagat tctttcacag taagcggaaa tccgcgacgc aattccaaaa
     1321 gctttcgttc cgccttcgca actctgatca agtattctgc atcggatagc tgaccggcta
     1381 tcgctatagc aagtgtgtca tccaccttag ctatcttttg tgttatttta gacccaatga
     1441 agaaaccctt gctggctctc ctgtctgaac ctaaaaccac gccttctttt gttttaatcc
     1501 caactatcgt tgtcactatt tttcatgatt atatacaaaa tacaagaata aaatgactag
     1561 gtttgaaaaa atgagtcaca taatttagtc ttcaggcgag acctcaccta tccgatctat
     1621 ccgttctatc cgttatcaat taattcacat gttcagttaa actaatctca tcgattttta
     1681 ttgtactgac actgaagtca tctaattttc tttgaagtat tgttgtaatc tccttgatta
     1741 ttctactggc accaaacata gcttccagtc tggattctcc tgatatagca ttggtctcta
     1801 tgacacaata atttcctatt attattaggg taagctcgaa cgacgtcgct tcatttaccc
     1861 attttaaagc gtatccattg ttagttttct tcaattccac aaatcgatat ttatcgaacc
     1921 actttccatg tagacctatc aatatctgct caacttcgat ttgaacgggt atgctggcgt
     1981 gaagaagttg gaagttaata ctgctctttg agaatatagg tgagggtttg acaattttac
     2041 cggacgaagt aaagacctct gcatttttat tcaagccata gcctgcatca gatttctcaa
     2101 ctaaacctaa ctcttcaagc ctagccaagg c
//
LOCUS       DATLQL010000299         1121 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2204623, whole genome shotgun sequence.
ACCESSION   DATLQL010000299 DATLQL010000000
VERSION     DATLQL010000299.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1121)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1121)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1121
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2204623"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1121
                     /locus_tag="VNB68_03150"
     CDS             <1..>1121
                     /locus_tag="VNB68_03150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="acetate--CoA ligase family protein"
                     /protein_id="HVD36377.1"
                     /translation="KPIVVIKSGRTPEGAKAAMSHTGALMGADEVYDALFLQSGVIRV
                     DTMQELFDLATAFSKQPIPKNDKGTVIVSNAGGPAIISTDACSKYGMILADITTSREA
                     IAKVIPAHGSARNPVDIVGDADFNRFEKVLNEVVSNPNVGSIVTMCTPSATLDYNDLA
                     RTIVKTTANSGKTSLAALMGLAEGTENKQILSDGGIPHFPYAEPAIRTLKAMYDFSNW
                     SIGKETEVKKFNIDKEKVKQIFDKVRNDGRKHLLEEEGYDVLNAYGFPRPKSYLCANE
                     EECVKKAEEIGYPVVMKIVSQDIIHKSDAGGVKVGLKNRQQVSFSFNEIIANAKNYKK
                     DAKIKGVLVQQMIESARETILGAKHDKLFGPLIMFGLGG"
BASE COUNT          401 a          186 c          243 g          291 t
ORIGIN      
        1 acaaacctat agttgttata aagtctggaa gaacaccaga aggtgcaaag gcagcaatgt
       61 ctcacacagg cgctttgatg ggagctgatg aagtatatga tgcactattt ttgcagagtg
      121 gtgtaatcag agttgataca atgcaggagc tttttgatct ggcaactgca ttttcaaagc
      181 aaccaattcc taaaaatgac aaaggtaccg taattgtatc aaacgcaggc ggacctgcca
      241 taatatccac agatgcatgt tcaaaatatg gaatgatact agctgacata accacgtcaa
      301 gagaagcaat tgctaaagtt atacctgctc acggatccgc aaggaatcca gttgatattg
      361 tgggagatgc agattttaat cgatttgaaa aagtcctgaa tgaagtggta tcaaatccta
      421 atgtgggatc gattgttaca atgtgtactc cgtcagctac tctggactat aatgatcttg
      481 caagaactat agtcaagact actgctaatt ctggaaaaac ctctcttgca gcgcttatgg
      541 gtcttgcaga aggaacagaa aataaacaaa tcctttccga tggaggtatt ccccactttc
      601 catatgcaga accagcaata aggacactga aagcaatgta cgatttttct aattggagta
      661 taggaaaaga aacagaagtt aagaaattta atattgataa ggaaaaagtc aaacaaattt
      721 ttgataaagt aaggaatgat ggaaggaagc accttttgga agaagaaggt tatgatgtat
      781 tgaacgcata tggctttcca agaccaaaaa gctatctttg tgcaaacgaa gaagaatgtg
      841 taaagaaggc cgaagaaatt ggctatcctg tcgttatgaa aattgtgtcg caagacataa
      901 tccacaaatc agatgctgga ggagtaaaag taggtcttaa aaataggcaa caagtttcat
      961 tttctttcaa tgaaataatt gccaatgcaa agaattacaa gaaagatgca aaaattaaag
     1021 gagtacttgt gcagcagatg atagaatctg ccagagaaac aattcttggt gctaaacacg
     1081 acaagctctt cggcccttta atcatgtttg ggttaggagg a
//
LOCUS       DATLQL010000300         1049 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2029195, whole genome shotgun sequence.
ACCESSION   DATLQL010000300 DATLQL010000000
VERSION     DATLQL010000300.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1049)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1049)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1049
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2029195"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            396..959
                     /locus_tag="VNB68_03155"
     CDS             396..959
                     /locus_tag="VNB68_03155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methane monooxygenase/ammonia monooxygenase
                     subunit C"
                     /protein_id="HVD36378.1"
                     /translation="MAQIPALIPKEVEIQRLKKIYIMVIMLGSIAASVEVDNFVDGSL
                     HQTAIRDSAFTPAHWWLYSHFVALPLGCGFVAMYDRRVPILRGPNNSMNTGLKITIIG
                     YLATMFTIGVNEMWHFWFVEEIFAVPNHWMFNMGVVVAFMGALAYVVRVYARLVELGA
                     ETPAKNPYVAEMYKLALEGKLYSRSIP"
BASE COUNT          336 a          191 c          208 g          314 t
ORIGIN      
        1 tcgattctta cgaatctact ttgaagctgt gcctgaacac catgcgcgtc ggcttggggg
       61 atgctcgaaa tgtaagcagc tattgcagaa agaactgtta ctgctgcaag agtcgtcact
      121 atcaacgtct tgctcttaat catatatagt atctaccgat ccctaaacaa acaaagatat
      181 atattttgct aaaagggcga attcgtgcat taaagacagg ctttagagat gagcaataat
      241 gattagcaca gacacccata ttattatttc agatataata atttttgata taatcttttg
      301 aacataatta tgtagatcag ataaataatt aagaaaatta gacaactctg ctcgagcgaa
      361 cttaatatac gagatagtcg aaatttcatc taacgatggc ccagatacca gcactaatac
      421 cgaaagaagt agaaatccag agactaaaga agatatacat aatggtcatt atgttgggtt
      481 caatagcagc atcagtcgag gtagacaact tcgttgatgg atctttgcac caaacagcaa
      541 ttagagacag tgcatttaca ccagctcact ggtggttata cagccacttt gttgcccttc
      601 cattaggttg tggatttgta gcaatgtatg acagacgagt gccaatttta agaggaccaa
      661 ataattctat gaatacagga ttgaagataa ccataattgg atatctagca accatgttta
      721 caattggtgt caacgaaatg tggcactttt ggttcgtaga agaaatattt gcagtgccta
      781 atcattggat gtttaacatg ggagttgttg tagctttcat gggtgctctt gcttatgtag
      841 tgagagtata tgcacgtcta gtagagctcg gagcagaaac accagcaaag aacccatacg
      901 tagccgaaat gtacaaactc gctttggaag gcaagcttta cagcagatct atcccataga
      961 atatcttaag atagtctgag agcttctccc cactttttat ttatagtttc ttttcatgct
     1021 taccgatatt ttttaatttt tgcgtcgca
//
LOCUS       DATLQL010000301         1397 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_607972, whole genome shotgun sequence.
ACCESSION   DATLQL010000301 DATLQL010000000
VERSION     DATLQL010000301.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1397)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1397)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1397
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_607972"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(29..>1397)
                     /locus_tag="VNB68_03160"
     CDS             complement(29..>1397)
                     /locus_tag="VNB68_03160"
                     /inference="COORDINATES: protein motif:HMM:NF014877.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36379.1"
                     /translation="SVDTFFSYMKISISGVRGIYGSDLTLQEVSRFTRLFASSMIKSE
                     KKCILARDTRPSGRIIIQTVSASLMEQGIDVYSLDIAPTPMAFREARKYQAGLIVTAS
                     HNPLEWNGLKFITEGRGIFENELDLLLKGNPSTSTSLGEYSTISSDYVNELADLIKQP
                     QSDKVMKVGLDPGGGATCKYVDQLFQKLGYTSFSVNGTEGISSRSPDPTSDHLKELAT
                     LITGNKLDIGFAFDLDGDRLVVVDSSGKKLNPDATLLLCVASALNLGMKEFVASIDTS
                     VSVEKLIKTHGGRLDYSKVGEANVVKKMLDTDADAGGEGSSAGFILPKFNKCRDGFLA
                     SAIISTLDMQAMNECLSYISDYAQIRSKVAIDSILHMEIMEKFYDLIKGESSQILTID
                     GIKTIIDDDSWVLIRPSNTEDAIRISVESKTTSTQHLFDKISEKVQSAYEYVKRKRNN
                     RSSYL"
BASE COUNT          392 a          299 c          247 g          459 t
ORIGIN      
        1 aagacaaggt tggctttttg atcctagcct agaggtaaga agatctatta tttctttttc
       61 gtttaacata ttcatatgcg gactgaactt tttcactaat tttgtcaaac agatgttgtg
      121 tactagtagt ctttgattcg actgaaattc taatagcgtc ttcagtattt gaaggtctga
      181 tgagaaccca tgaatcatca tctattatcg ttttaatgcc gtctattgtt aaaatttgag
      241 acgattctcc tttgataaga tcgtagaatt tctccattat ttccatatga agaatagagt
      301 caatagccac ttttgaccta atctgagcat aatctgaaat atagcttaga cactcattca
      361 ttgcttgcat atccaatgta gagattatgg cgctagctaa aaatccatct ctacacttgt
      421 tgaactttgg caaaatgaaa cccgcactgc ttccctcgcc tcctgcatct gcatcagtat
      481 ctaacatttt cttaacaaca tttgcttcgc caactttgct atagtccaac ctcccaccat
      541 gtgtcttaat aagtttttcc actgatacac tagtatctat acttgctaca aattctttca
      601 ttccaaggtt aagcgcactg gcaacacata acaaaagcgt agcatcgggg tttaatttct
      661 tcccgctgct atcgacaacc actagtctat ctccatctaa atcgaatgca aatccaatat
      721 caagtttatt tcctgttatc aatgtggcta attcctttag atggtcacta gtcggatcgg
      781 ggcttctcga tgatataccc tcagtaccat ttactgaaaa agatgtgtag ccaagttttt
      841 gaaatagctg gtcaacgtac ttacatgtag ctcctccacc gggatcaagt ccgactttca
      901 tgactttgtc actttgtggt tgtttaatca aatctgcgag ttcattcaca taatctgatg
      961 atatagtaga gtactcacca agggaagtag aggtggatgg attgccctta agcagcagat
     1021 ccagttcatt ctcaaaaatt cctcttccct cggttatgaa tttcaaccca ttccattcca
     1081 acggattgtg tgaagccgtt acgattaatc ctgcttgata ctttcttgct tctcgaaatg
     1141 ccataggagt tggcgctatg tcgagactat aaacatcgat gccttgttcc atgagactag
     1201 ccgagacggt ctgaatgatt attcttcctg aaggtctggt gtctctggca agtatacatt
     1261 tcttttctga tttaatcatg gaagatgcaa ataagcgggt aaatctactc acttcctgta
     1321 aggttaggtc agagccataa attcctctga caccggaaat agatatcttc atgtaggaaa
     1381 agaaagtgtc gacacta
//
LOCUS       DATLQL010000302         1172 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1497387, whole genome shotgun sequence.
ACCESSION   DATLQL010000302 DATLQL010000000
VERSION     DATLQL010000302.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1172)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1172)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1172
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1497387"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..141)
                     /locus_tag="VNB68_03165"
     CDS             complement(<1..141)
                     /locus_tag="VNB68_03165"
                     /inference="COORDINATES: protein motif:HMM:NF014929.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36380.1"
                     /translation="MNVVGLEEHLPELLEGRVVTKGDMIPVNMVGRKIGFLVTTIIPT
                     NDP"
     gene            complement(169..468)
                     /locus_tag="VNB68_03170"
     CDS             complement(169..468)
                     /locus_tag="VNB68_03170"
                     /inference="COORDINATES: protein motif:HMM:NF014419.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36381.1"
                     /translation="MDSKENSSNVSLRVSETDPKFVGRGIALVDPKVMIELGLSTGDV
                     VEISVNRRKTHVLLWSSQQQDYGRRLIRVDGYTRNNLGIGIDDNVFIRKVKTAKA"
     gene            complement(511..1047)
                     /gene="hsp20"
                     /locus_tag="VNB68_03175"
     CDS             complement(511..1047)
                     /gene="hsp20"
                     /locus_tag="VNB68_03175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042026 - protein refolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="archaeal heat shock protein Hsp20"
                     /protein_id="HVD36382.1"
                     /translation="MSRWRDPWGYNSRIFEQIDKEFSDAEDMLNRMFRTVRESSAGIP
                     ETFPYYYGYQITMGPDGKPRIREFGNARPASKGLMQQSNVRQPLIDTNFDPKENALTI
                     TAEMPGITKQDVKVGVEEGLVTIHAEKGDKKYHAELPVEGELNADTAKATYTNGILEL
                     KIKIREPPKQKAKEIRVE"
BASE COUNT          283 a          273 c          194 g          422 t
ORIGIN      
        1 aggatcgtta gtaggaataa ttgtggtaac taagaatcca atttttcgac ccaccatgtt
       61 tacaggtatc atatcacctt tggtaacaac acgtccctct aataactccg ggaggtgctc
      121 ttctaaaccg actacattca gttcttctgc aggagataat acaacttgtt aggctttagc
      181 tgttttcact tttctgataa atacgttatc gtcaatgcca ataccaagat tgttacgtgt
      241 atatccatca actcgaatta gtcttctacc atagtcttgc tgttgactag accaaagtag
      301 aacatgagtc tttcttctat tgacggaaat ctcgacgaca tcgcctgtgc ttagacccag
      361 ttcaatcatt acttttggat ctacaagagc aattccccta cccacaaact tagggtctgt
      421 ctctgaaacc ctaagagata cattactact attctcttta ctatccattt tatgtcgcct
      481 ctgaatgtaa aaaataagtt gagttttgtc ctactccact cttatttcct ttgctttttg
      541 ctttggaggt tctctgatct ttatttttag ttccagtatt ccatttgtat aggtcgcctt
      601 tgcagtatca gcattcaatt cgccctcaac tggcagttcc gcatgatatt ttttgtcccc
      661 cttttctgca tgaatcgtta ctagtccttc ttctactcca acctttacat cttgtttagt
      721 tattccaggc atctcggctg tgatggttag agcattctcc tttgggtcaa agttcgtgtc
      781 tatgagcggt tggcgaacat tgctctgctg catcaggcct ttggacgccg gtcttgcatt
      841 tccaaattct ctaatgcgag gctttccatc tggtcccatc gttatctggt acccgtaata
      901 gtacggaaat gtctctggta tgccagcgct cgattccctt actgttctga acatcctgtt
      961 cagcatgtct tctgcgtctg aaaattcttt gtctatctgt tcaaaaattc tgctgttata
     1021 cccccatgga tctctccacc ttgatatatc acctaacgta aattaatgga tatgacaata
     1081 tatatttttt tcttatgaca ctctcttgct accgttacca attgcagagt atatttgtcg
     1141 attcagaaag atataaatta aatttctctt tt
//
LOCUS       DATLQL010000303         1254 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1849141, whole genome shotgun sequence.
ACCESSION   DATLQL010000303 DATLQL010000000
VERSION     DATLQL010000303.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1254)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1254)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1254
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1849141"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(59..520)
                     /locus_tag="VNB68_03180"
     CDS             complement(59..520)
                     /locus_tag="VNB68_03180"
                     /inference="COORDINATES: protein motif:HMM:NF003269.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15e"
                     /protein_id="HVD36383.1"
                     /translation="MRNYISATWTKMWRSNTDELKSKAISWRREPVLHKIPKPSRLDR
                     ARRLGYKAKQGILVVRARVGRGGMRKQRPVSGRRPKHIGVVHIKQGTSMRKVAERRVN
                     EKFPNLEVLGSYYLHKDGKYLWYEVILADPAHPRIYKDKEMRAKMKAFAKI"
     gene            complement(666..>1254)
                     /locus_tag="VNB68_03185"
     CDS             complement(666..>1254)
                     /locus_tag="VNB68_03185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HVD36384.1"
                     /translation="PFADIETKKGNWIKKNLTGVELRGKYLGIMGVGNIGRNIGRLGN
                     ALRMNLIGYDIFPISKDFIKEVGLIVTDFDTLLESADFITCHVPLTTETKKMFNKEKF
                     SKMKPTAFLINTSRGEVIDENALHNALKDGKIAGAALDVYETEPPTNGMLMQLPNVIC
                     TPHIGAQTKEAQELGAVVIAEKIIQTLQEIEIGEK"
BASE COUNT          319 a          290 c          209 g          436 t
ORIGIN      
        1 tatgttgagc attgttttga taggtgctct tttctttcca ttatctgacg ataccaattt
       61 aaattttagc gaaggccttc attttggcac gcatctcctt atctttataa atacgtggat
      121 gagcgggatc cgctagtata acctcgtacc ataagtattt tccatcctta tgcaagtaat
      181 aagatcctaa tacttccaag ttaggaaatt tctcatttac tcttcgttcc gcaacttttc
      241 tcatacttgt tccttgtttg atatggacca cgccgatatg ttttggcctt ctgcctgaca
      301 ccggcctctg ttttctcatg ccaccccggc caactcttgc acgtacgaca agaattccct
      361 gtttcgcctt atatcccagc ctcctagctc gatcaagcct gcttggcttt ggaatcttat
      421 gcagcactgg ctctcttctc caagaaatag ccttggattt tagctcatca gtattagatc
      481 tccacatctt cgtccaagtg gcggaaatat aatttcgcat aataaatctg acttatttcg
      541 tagcaatata tagaccttta agaaaagaaa atttactatt tttcgaagct atatcgtgtc
      601 caattttttt gtattaaggt caaccggctt caaatcacaa ggatcttaac tgaagcgacc
      661 ttgtcttatt tttcgcctat ttcgatttcc tgtaaagtct gaataatttt ttcagcaatc
      721 accaccgctc ccaattcttg agcttcctta gtctgagcgc ctatgtgtgg ggtgcaaatc
      781 acattaggta actgcattag cattccatta gttggcggct cggtttcata aacatctaag
      841 gcagcgccgg cgatcttccc gtccttaagt gcattgtgta atgcattttc gtcaataacc
      901 tctccgcgag aggtattgat aagaaatgca gttggtttca tttttgaaaa tttttcttta
      961 ttgaacatct tctttgtctc tgtggttaac gggacgtgac aggtaatgaa atcggcactt
     1021 tctaataagg tatcgaaatc tgtaacaatc aagccgactt cttttatgaa atctttgcta
     1081 atgggaaaaa tatcatatcc aatcaaattc attctgagag cgttccccag tcttccaata
     1141 tttctaccga tatttcccac acccatgatt ccaagatatt tgcctcgaag ttctacccct
     1201 gtcaaattct tcttaatcca gtttcctttc tttgtctcaa tatctgcaaa agga
//
LOCUS       DATLQL010000304         1295 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_76512, whole genome shotgun sequence.
ACCESSION   DATLQL010000304 DATLQL010000000
VERSION     DATLQL010000304.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1295)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1295)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1295
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_76512"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..707
                     /locus_tag="VNB68_03190"
     CDS             <1..707
                     /locus_tag="VNB68_03190"
                     /inference="COORDINATES: protein motif:HMM:NF015057.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="iron-containing redox enzyme family protein"
                     /protein_id="HVD36385.1"
                     /translation="SQVLHNLFLSETSNFNMAKLVQQIEYQIERYSLLKHPFYQSWSQ
                     GKLTKENLRGYSKEYFQLVKAVPQLVENIASCATEENPKDTISQSLKEENEHIIPWMN
                     FAYALGVPTGELVNYRGDERITCAVLDLDHITKLSLEEGAAAMYAYEKELPKISRSKI
                     DGLSKFYGLSSKNAVDYFEIHERTDVRHALVWKSMLQHVPKEKEHAVLTSAIRSLRDQ
                     NKILDCVQDKYCQKIN"
     gene            747..820
                     /locus_tag="VNB68_03195"
     tRNA            747..820
                     /locus_tag="VNB68_03195"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:781..783,aa:Ile,seq:cat)
     gene            909..1277
                     /locus_tag="VNB68_03200"
     CDS             909..1277
                     /locus_tag="VNB68_03200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36386.1"
                     /translation="MFRRTIFEPMFTGQSYSMFIEGLKSPVTKAAYTYALQKYMKYLN
                     INNPDDIVRYQDNPKFIQNQIIQYLILLKNPPHSLSYATRSQYLAAIMTFYDLNEVAM
                     VKNELGHLLWFKKTRSKKFE"
BASE COUNT          444 a          254 c          258 g          339 t
ORIGIN      
        1 gaagccaagt cttgcacaac ctttttctat cggaaacttc aaattttaat atggctaaac
       61 tcgttcagca aattgaatat cagattgaaa gatacagcct tttgaaacat cccttttacc
      121 aatcatggtc acagggaaaa ttaaccaaag aaaatttacg aggctattca aaggaatact
      181 ttcaattagt taaagcagtg ccgcaactgg tggagaatat agcctcttgc gctacggaag
      241 agaatccaaa ggatacaatt tcccagagtt tgaaagaaga aaatgaacat attattccat
      301 ggatgaactt cgcttacgcc cttggtgttc caacaggtga actagttaat tatcgtggtg
      361 acgaaagaat aacttgtgct gtgttggatc tcgatcacat cacaaaactc tccttggagg
      421 aaggtgcagc agctatgtac gcgtacgaaa aggaactacc aaagataagc agatcgaaaa
      481 ttgatggttt gagcaagttc tacgggttat ctagtaaaaa cgcagtagac tactttgaaa
      541 tccatgagag aactgatgtc agacatgcac tagtatggaa aagcatgttg caacatgttc
      601 caaaggaaaa ggaacacgct gtgctaacgt ctgctatcag atcattacga gatcagaaca
      661 agattttgga ttgtgttcag gacaaatatt gccaaaagat taactgaaaa cctttatacc
      721 gtttccatta tcgaattgct gtctaagggc ccatagctca gcctggtaga gcgaccggct
      781 cataaccggt cgggcagggg ttcaaacccc cttgggccca ctttatggtg ggttcaaagt
      841 tctaaaatag aaagagctaa agctggcttc atacctacga atagccatgt cattttggag
      901 ggctacagat gtttagacga acaatattcg agccaatgtt tacagggcag tcctacagca
      961 tgtttataga aggtttaaag tctccagtca ccaaagccgc ctacacatat gccctccaaa
     1021 aatacatgaa atatctaaat atcaataatc ccgatgatat agtaaggtat caggacaatc
     1081 ctaaattcat acagaaccaa attattcaat atttaatact attgaaaaat ccacctcact
     1141 cattaagcta tgccacacgg agccagtacc ttgccgcaat tatgacattc tatgatctta
     1201 acgaagtggc gatggtcaaa aatgagttgg gccacttgtt gtggtttaaa aaaactagat
     1261 caaaaaaatt tgaatgataa taataatcgg caaag
//
LOCUS       DATLQL010000305         3528 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2207254, whole genome shotgun sequence.
ACCESSION   DATLQL010000305 DATLQL010000000
VERSION     DATLQL010000305.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3528)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3528)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3528
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2207254"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(506..1474)
                     /locus_tag="VNB68_03205"
     CDS             complement(506..1474)
                     /locus_tag="VNB68_03205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HVD36387.1"
                     /translation="MALKLAEYKTTVHNDWCAGCGDFGILNAIQMALHELQIPRHRAV
                     IFSGIGCSGKTPHFINTYGVHTLHGRVLPFAQGAKLANPDLEIIALGGDGDGLGIGAG
                     HFVGAGRKNVDIPYILFNNAVYGLTKGQASPTLKLVMKTKSLSQPNSNSSVNPISLAL
                     VAGYTFIARSYSYDVRHLRDVIIKAIQHKGLAYVDVLQPCPTYNDINTREWFQGQDNI
                     DQESGRQVPRIYKIEDRGYDGVVHNTNELGNKMAQVLDIANEWDSKIPIGIFYQNEFV
                     PTYHERISQHISDYATNPPAKQPLCTPEGVPLADISKLLSALRIDN"
     gene            complement(1464..3428)
                     /locus_tag="VNB68_03210"
     CDS             complement(1464..3428)
                     /locus_tag="VNB68_03210"
                     /EC_number="1.2.7.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020266864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018491 - 2-oxobutyrate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0019164 - pyruvate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0047553 - 2-oxoglutarate synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:ferredoxin oxidoreductase subunit
                     alpha"
                     /protein_id="HVD36388.1"
                     /translation="MSSALVKNSMSWVIGGPQGSGVDSAANIFSRACAQGGLHLFGKR
                     EYYSNIKGDHSYFTVRVAENPVNSHLDEINILVTFDAETVFRHAHKVAKGGAIIYDSS
                     LVNISINEVPTIDDQSSIRISDILNTEGYPTTIQGILDFAKSKGCVVYGLPYFEMIED
                     LARGLNDPSLSKLTRMVNVIALSSSLALLKFDKKQLIKAIQTVFQTKPKVLGNNIAAA
                     EYAYSYIGKKYDITQFNYVLEPRPPLKEYLLVQGNQASAMGKIIGGCRFQTYYPITPA
                     SDDSEFLEANQIFDLTSGAKGSIVVVQTEDEIAAITMAISAALTGVRSATATSGPGFS
                     LMAEALGWAGMNEVPVVITLYQRTGPSTGLPTRHEQSDLLFAIHAGHGEFPRIVFASG
                     DIEEAFYDSIKVFNLAEKYQLPVIHMLDKALANSIKTCKEFDQRKVPIERGDLINKVD
                     ENLSTKSGGHYLRFKLSDNPVSTRVPLGTENAIFWNTGDEHTEEGHITEDPDLRNKMV
                     SKRMNKLEKALSEIPIEDKLVCFEFGKSTGDITVVSWGSTKGAIIEAMEMLAKRGKGI
                     RFIQLRLLHPFPTYEMMNLLKNTRLLIDIEMNYTSQLASLLKQHTGSDIDYRIVKFNG
                     RPMSTSEVYYAVSAILEGTSQKRIVLEHGT"
BASE COUNT         1000 a          757 c          634 g         1137 t
ORIGIN      
        1 caatcggccc tatctcaacc aaatgaccga ccagtatttt ttcagttaat gtaagtggcc
       61 tgtctacaat atgcctgaat tttaaaatat tttttttcga tctttcataa atcgatgaaa
      121 cctgttcagg tgttgaatcc actttgttca caattgtatc tatcatccac taaacgctaa
      181 tgataacgat gacgatattg aaataaaagt catcctatac ctctattttt cgtcatatat
      241 tgtcgacaaa gtaaaatgag tctcttcttc ggtccaaagt gacaggcgcc ctcttctgac
      301 aattatcaac tggagaaatc tgcatagtta aagaccatag atggttactc tagaggacat
      361 tgatgattct gtcatgaact cataatgctg atccacctca tcatcatatg tgtgaccact
      421 aatatccaaa tatttgacat gaagagtttg aatttttaaa atagcgtcca aaattcacat
      481 catgaaaaag tgtagttgat attactcagt tatcaattct caaggcagat aatagtttac
      541 tgatatccgc taacggcact ccttcgggag tacagagtgg ctgttttgct ggcgggttag
      601 tagcataatc tgaaatgtgt tgagatatgc gctcgtgata ggtcgggaca aattcatttt
      661 gatagaaaat acctatgggg atcttactgt cccattcatt ggcaatatcc aaaacttggg
      721 ccattttatt acctagctcg ttagtattat gcaccacacc gtcatagcct ctgtcttcta
      781 ttttgtaaat cctgggcact tgacgtcctg attcttggtc gatattgtct tgaccctgaa
      841 accattcacg agtatttata tcattgtagg tgggacatgg ttgaaggaca tctacatatg
      901 ctagaccttt atgttgaatt gcctttatta taacatcacg aagatgtcta acatcatagg
      961 aatatgagcg agcaataaac gtataacctg ctaccaacgc gagtgagata ggattaaccg
     1021 aactgttcga attaggttgg gatagggatt tagtcttcat taccaattta agcgtcggcg
     1081 atgcttggcc cttagtcagc ccgtatactg cattattgaa taatatgtaa gggatatcca
     1141 catttttcct gcccgctcca acaaaatgac cagcccctat tccaaggcca tctccatcac
     1201 cacccaatgc gattatttct agatcaggat tcgccaactt tgcaccctga gcaaagggta
     1261 atactcttcc gtgaagtgta tgaactccat atgtatttat gaaatgaggt gtctttccgg
     1321 agcaaccgat acctgaaaaa atcacggctc gatggcgagg gatttgcagc tcatgaaggg
     1381 ccatttgaat agcgttaaga attccgaaat cgccgcatcc tgcacaccaa tcattgtgaa
     1441 cagttgtttt gtattcagct aacttaagtg ccatgttcta acacaattct cttttgtgac
     1501 gtaccttcta atatagcact tacggcataa taaacttcac tggttgacat tggtctacca
     1561 ttaaatttca ctattctata gtcaatgtca cttccagtat gttgttttaa taatgatgca
     1621 agttgagaag tataattcat ttcgatgtcg ataagtagcc tggtattttt taataagttc
     1681 atcatttcat aagtaggaaa agggtgtaac aatctaagtt gaataaacct aatacccttg
     1741 cctctcttgg caagcatttc catagcctcg ataatagcgc cttttgttga accccaactg
     1801 acaactgtta tatcccctgt tgattttcca aattcgaagc atacaagttt atcttcaatt
     1861 ggtatctcgg acaaagcctt ttccaattta ttcatccttt tacttaccat cttgttcctt
     1921 aggtcaggat cttccgttat gtgtccttct tctgtatgtt cgtctccagt attccaaaaa
     1981 attgcattct ccgttccaag aggcacacgt gtagatacag gattatcact caatttaaat
     2041 cggagataat gtccaccact tttagtggat aaattctcgt cgactttgtt aatcagatct
     2101 cctctttcaa ttggaacttt gcgttgatca aattctttac atgtttttat actgttggcc
     2161 aatgctttgt caagcatatg aatcacaggt aattgatact tctcagccag attgaatact
     2221 ttgatagaat cataaaatgc ttcttctatg tctcctgatg cgaaaacaat tcttggaaat
     2281 tctccatggc ctgcatgaat agcaaacaag agatcacttt gttcatgtct cgtaggtaat
     2341 ccagtagacg gacccgtacg ctggtatagt gtgattacaa caggtacttc gttcattcct
     2401 gcccatccta atgcttcagc catcaaggag aaacccggtc ccgatgttgc agtggcagac
     2461 cttactccag ttaacgcggc cgatatcgcc attgtaattg ctgctatctc gtcttctgtc
     2521 tgtacaacca caatggaccc tttggcgccg cttgttaggt caaagatctg attggcttcc
     2581 aaaaattcac tatcgtcact tgcaggtgtt ataggatagt acgtctgaaa tctacatccg
     2641 ccaataatct tacccatagc agatgcttga ttaccttgta caagcagata ttctttcagt
     2701 ggtggtcttg gttcaagcac gtaattgaat tgggtgatat catatttttt cccaatatac
     2761 gaatacgcat attcagccgc ggcgatgtta ttgcctagta ctttgggttt tgtctgaaag
     2821 acggtctgta ttgctttaat gagttgtttt ttatcaaact ttaatagtgc taaagacgac
     2881 gatagcgcta taacattaac cattctcgta agtttactta atgaaggatc attaagccct
     2941 ctagccaaat cctcaatcat ttcaaagtat ggcagaccat agacaacaca accctttgat
     3001 tttgcaaaat ccaatatacc ctgtatggtt gtcggatatc cttctgtatt tagaatgtca
     3061 gaaattcgaa ttgacgattg gtcgtcgatc gttggaactt cgttgataga tatgttaact
     3121 agtgatgaat cataaataat cgcgccccct tttgccactt tatgcgcatg tcgaaataca
     3181 gtctctgcgt caaatgttac aagaatattt atctcatcaa gatgagaatt aaccggattt
     3241 tccgccaccc tcacagtgaa atagctatga tcacccttga tattagaata atactctctc
     3301 tttccgaata aatgcagccc gccttgtgcg catgctctag agaagatatt agcagccgaa
     3361 tccacaccgc ttccttgggg accaccaatt acccaagaca tcgaattctt cacaagtgca
     3421 ctgctcaatt tttaattttt ctcacgtcct acttttaatg gtttataatc gattcaatga
     3481 tgagtgtatt atccacctgt agcggcgtca tacaaacagc attcacag
//
LOCUS       DATLQL010000306         1287 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2207679, whole genome shotgun sequence.
ACCESSION   DATLQL010000306 DATLQL010000000
VERSION     DATLQL010000306.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1287)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1287)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1287
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2207679"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..180
                     /locus_tag="VNB68_03215"
     CDS             <1..180
                     /locus_tag="VNB68_03215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36389.1"
                     /translation="ANECYSTRVLKDLKQRILERGMIFDFPGHMRSRQINGNHVRDVI
                     HRMGPGQQLTLMKYM"
     gene            complement(503..970)
                     /locus_tag="VNB68_03220"
     CDS             complement(503..970)
                     /locus_tag="VNB68_03220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36390.1"
                     /translation="MNNTKFILGVIAMITLGTTTIITTPGLFESANAIKACGSGNSTH
                     SPSSDNKKVPPAITGYNVYVAWWTNKTGNDEVMFRASTDIGKTFGDVINLSNSTDSNS
                     TRVEIDSDADSVVVTWWETNQTDDTPVMRVSNDNGKTFGPLLKLANDGTLSGE"
BASE COUNT          382 a          255 c          241 g          409 t
ORIGIN      
        1 gccaacgaat gttattcaac tagagtacta aaggatttaa aacaaaggat attggaaaga
       61 ggaatgatct ttgactttcc aggacacatg agaagcagac aaattaatgg aaaccatgtg
      121 agagatgtaa ttcataggat gggacctggt caacagctta ccctcatgaa gtacatgtga
      181 tcaatagaca cgtaataatc ggccacctac gcaatcactc aacagtttat gctaatgctt
      241 ctatccgagt catttcagaa aaatagattg gtagtgttct ttattgtcat tagatctagc
      301 agacttacgt atatgctcta ctgttcataa ctcgattcga ttctacattc ctgtttaaca
      361 ctattatcaa tgaaagaaat aagactgtgt caatatctac aatacttacc aaagtaaata
      421 tacttcatga tttcattcct cctaactatt gtttgaagta aaaaaagaaa gggagaggaa
      481 aactaccgta tattggcggg cattactcgc cgcttaaagt tccatcatta gcaagtttca
      541 acagtggtcc aaatgtctta ccgttgtcgt tacttactct cataaccggg gtatcatcag
      601 tctgatttgt ttcccaccat gtaacgacta cgctatctgc gtctgaatct atctctactc
      661 ttgtagaatt tgaatctgta gaattactca aattaattac gtcgccaaac gtcttgccta
      721 tgtccgtgga agctctgaac ataacttcat catttccggt cttgttagtc caccatgcta
      781 cgtaaacatt gtaacctgtg atcgcaggag gcactttttt attatcactg ctaggactat
      841 gggtcgagtt tccacttcca caagccttga ttgcgtttgc tgattcaaac aatcctggag
      901 ttgttataat tgttgttgtt ccaagagtta tcatagcgat aactcccaaa atgaattttg
      961 tattattcat gagatttttc tatctgtgga ctataaaaag taaagccagt ttcaaagtgc
     1021 ttgcttttct cctatctacg gaaaagtacc ctttgatggt gcagtcgatt ccggtactga
     1081 tgaaggtcga aggagccgtt tcagatatta gtcaaaccgt agaaggggat ttttgcatta
     1141 caaaaccaac tcggggggcc gacatttatt tacgaaccta atcgtccata gtgtctgact
     1201 tttaagaggc tcatccctat cactagcttg agattgaatc tataaggtac taaagtatgt
     1261 attttggatg ctgctcactt ggtttgc
//
LOCUS       DATLQL010000307         1515 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1499781, whole genome shotgun sequence.
ACCESSION   DATLQL010000307 DATLQL010000000
VERSION     DATLQL010000307.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1515)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1515)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1515
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1499781"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1042)
                     /locus_tag="VNB68_03225"
     CDS             complement(<1..1042)
                     /locus_tag="VNB68_03225"
                     /inference="COORDINATES: protein motif:HMM:NF013086.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HVD36391.1"
                     /translation="MLTRSVKVENNKMAEHMKKQSNYSCDVLIIGGGSAGLRAAIAAH
                     DAGANVLIISRSKRGDPHTTLARGGINAALGTMDPEDNWTIHALDTLREGEFIADYEK
                     VEVLCKNAPDAIKELVNWGARFHREKDGRLTQRFFGAHTYRRTVFYEDWTGLEIIRVL
                     MEQVNNRKIKLIDNVYITKLLKSNDDGDDVSGEKRTLSSTAPPEEVVKEEVIGAVGVD
                     IKNKEFVTFECNSLILAAGGYTRVYPVSSSRIFENYGEGVALAYEAGVDLVDMEMVQF
                     HPTGMVWPEKAVGLLATEAIRGEGGNLLNSKGERFMKNYDPERMELGPRDVVARANYN
                     EIISGRGTEHGGV"
BASE COUNT          401 a          359 c          234 g          521 t
ORIGIN      
        1 aaacaccacc atgttctgtt cctcttccag agattatttc attatagtta gcacgagcta
       61 ctacatcacg tggccctagc tccattcttt caggatcata atttttcatg aacctctcac
      121 cttttgaatt taataaatta cctccttcac cacgtattgc ttctgtggcc agcaagccca
      181 ctgctttctc tggccaaacc attccagtag gatgaaactg caccatctcc atatctacta
      241 aatctacacc tgcttcatat gctagagcta cgccttctcc atagttttca aaaatcctag
      301 aactacttac tggatagact cgtgtatatc caccagccgc aaggattaaa gaattacact
      361 caaatgtcac aaattcctta tttttgatat ctacgccaac agctcctatg acttcttctt
      421 ttaccacttc ttccggtggc gctgttgatg atagtgttct tttttctcca cttacatcat
      481 caccatcatc atttgatttt aataattttg tgatgtaaac attgtctatt aatttgattt
      541 tccggttgtt tacttgttcc atcaatacac ggattatttc aagaccagtc caatcttcgt
      601 aaaatacagt ccttctatag gtgtgagctc caaaaaaccg ctgtgttagc ctaccgtctt
      661 tttctctgtg aaatctagca ccccaattaa ctagttcttt tatagcatcg ggtgcattct
      721 tgcagagtac ctcaactttt tcatagtcag caatgaactc gccttccctc aaggtatcaa
      781 gtgcatgtat cgtccagtta tcttctggat ccatagtacc aagagctgca ttgataccac
      841 ctcttgcaag cgttgtatga ggatcacctc tcttacttct actaattatg agaacattgg
      901 cgcccgcatc atgagctgca atcgcagctc gaagaccagc agatccacca cctataatta
      961 aaacatcgca agaatagtta gattgttttt tcatatgctc agccattttg ttattttcca
     1021 ccttgacact tcttgtcaac atgatgtgta tgtatttctt ttaaaagtat ggttggtttt
     1081 ctctcattca tggcttgatt cattttggag cttgcttcat ttggttcttt aatagcatac
     1141 cctttactat tacaagcttc ggcgaatttc accaaatgta ttggagaaaa ttccactcca
     1201 aattcagagt ttccaacaaa tgctatctta ggacctctta tcttgaccct tgaaccttcc
     1261 tctaaagttg aaagtctttt tgtatggcga atctctgatt cttgttgtga acattataaa
     1321 attctccgtg acgagaaatt actcaaagtc atacactgtg agcattctct ttggaggaaa
     1381 tgtctataac cctgagaact ctcctgttcc ttcctgcatg cttttctgca attgccctat
     1441 cagtatagtt tgcgcaagag cataatagaa gaggatccgt ctgcagatat gtgatatatt
     1501 gaaaatgatt gacct
//
LOCUS       DATLQL010000308         1102 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_255350, whole genome shotgun sequence.
ACCESSION   DATLQL010000308 DATLQL010000000
VERSION     DATLQL010000308.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1102)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1102)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1102
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_255350"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            478..>1102
                     /locus_tag="VNB68_03230"
     CDS             478..>1102
                     /locus_tag="VNB68_03230"
                     /inference="COORDINATES: protein motif:HMM:NF012981.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylglycerol kinase family protein"
                     /protein_id="HVD36392.1"
                     /translation="MSASGMKRQVAHKEKFSNTSPNILLVVNPSSSSGLTGKGWKDLF
                     KKIKEDFGETPLEVVFTKGPGDGTTLTREFLKKGFRKVVAIGGDGTINEVANGFFFKE
                     EQNLKSGKVTSSNGQDRPQDNNIEPAILRPINSEAIMGLLPSGTRNVLAKSLDFPEEV
                     MKCCRNFVKGKTQEIDVISTTVTDTKDHSKTITKVFLNAAEIGFGAEI"
BASE COUNT          373 a          181 c          237 g          311 t
ORIGIN      
        1 ccatacagtc tactctcgtc ttttgatttt taaataagaa atatggagca gttgtgatta
       61 aattagatga tcgcgatctc ttatttgctt catttggcga ctagtaattt cagagctcag
      121 gagcggctaa catttaaaat accaaaattg gataacctgg gccattttga atacaagaag
      181 ttaatgcatt gaaaataaag tataggagaa gttataagat ttttgcgaac acacccgtct
      241 tttgctgtaa ccacccctgt ttctaccaaa ggttttctcc tatcgctttt tcgattgatt
      301 tattgctaat ttgagtggtt gctcaagact catatctgca cgtaatcagt tttgtaccca
      361 ttaacaataa tgtaattaat aactaaatgt tgggagaacg aggaaaaaga aaagcagaag
      421 caacaggtta ttattggtca gactttctca gtgaaaagaa gaatgaggag aagcgacatg
      481 tcagctagtg gcatgaaacg gcaagtagcg cataaggaga agttttcaaa cacaagtcct
      541 aacatcctct tggttgtaaa tcccagctcc tctagtgggt tgactggcaa aggttggaag
      601 gaccttttta agaagataaa agaagatttt ggtgaaactc ctcttgaagt tgtatttact
      661 aaagggccag gtgatggaac gacacttaca agggaatttt taaagaaagg attcagaaaa
      721 gttgttgcaa taggcgggga tggaactata aatgaggttg caaatggttt tttcttcaaa
      781 gaagaacaaa atctaaagag tggtaaggta acatccagta atggtcagga tcgtcctcaa
      841 gataataata tcgagcccgc aatcctgcgt cctataaact ccgaagctat aatgggattg
      901 ctgccaagcg gcacaagaaa tgttctggcc aaatcactag attttcctga agaagttatg
      961 aaatgctgtc gtaatttcgt aaaaggtaaa acacaggaga tagatgttat aagcacgaca
     1021 gtaactgata ccaaagatca ttcaaaaaca ataacaaagg tttttctcaa tgcggcagag
     1081 attggctttg gagctgagat ta
//
LOCUS       DATLQL010000309         1092 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_255776, whole genome shotgun sequence.
ACCESSION   DATLQL010000309 DATLQL010000000
VERSION     DATLQL010000309.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1092)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1092)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1092
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_255776"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..662
                     /locus_tag="VNB68_03235"
     CDS             <1..662
                     /locus_tag="VNB68_03235"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HVD36393.1"
                     /translation="EVMSEESYQTVVVGLIDHILPLVPNLVADLEKGIRVLDIGCGKG
                     KAVNLMAKHFPKSTFHGYDLSKEAIDDATKEGKGMNNSNVFFKVHDILDLSSKNEFDL
                     ITAFDAIHDQPKPDLVLKNINHSLSDNGVFLMQDILAATPLKDNISHPLGTFLYTISC
                     MHCMSVSLSQNGAGLGAMWGKEKAVSMLREAGFVNLQVKTLPHDFQNYYYCAYKIRLN
                     K"
     gene            737..>1092
                     /locus_tag="VNB68_03240"
     CDS             737..>1092
                     /locus_tag="VNB68_03240"
                     /inference="COORDINATES: protein motif:HMM:NF019095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHRD domain-containing protein"
                     /protein_id="HVD36394.1"
                     /translation="MMIQNNKLLMIVLFTSLLCVGSVSILLNTAKAQEDPSFSATLSG
                     KDEVPPTESNSTGTAKFQVNQNNDNESQVSYWVNITGIKEVNEAHIHNGTTGENGDIV
                     ATLSNWKSAKGDDRPP"
BASE COUNT          376 a          204 c          210 g          302 t
ORIGIN      
        1 atgaagtaat gtccgaggaa agctatcaaa cagttgtagt aggtttaatt gatcacatct
       61 tacctctagt tcctaatctt gttgctgatc ttgaaaaggg aattcgagtt cttgacatag
      121 gatgcggcaa aggaaaagca gtcaatctta tggcaaagca ttttccaaaa agtacctttc
      181 atggatatga tctctcaaaa gaggcaatcg acgatgccac aaaagaagga aaaggaatga
      241 ataattccaa tgtttttttc aaagttcatg acattttaga tttaagttca aaaaatgaat
      301 ttgatctaat cacagcgttt gatgcaatac acgatcaacc taaaccagat cttgtactaa
      361 aaaatatcaa tcattctctt tcggataacg gagtctttct tatgcaggat attctggctg
      421 caactccatt gaaagacaat atttcccacc cgttaggaac gtttctttac acaatttctt
      481 gtatgcattg catgagtgtt tcattgtctc aaaatggcgc agggctggga gccatgtggg
      541 gaaaagaaaa agcagtctct atgttaaggg aagcaggatt tgttaatcta caagtgaaaa
      601 cattaccaca tgattttcaa aactattatt attgtgctta caagatcaga ttgaataaat
      661 aatcgaggga tgagttacag ttatccatgg ctaaattatt aaaagtctta taaatcatga
      721 aggacacaaa ggaataatga tgatacaaaa taacaaactt ctcatgatcg ttctattcac
      781 atccctcctg tgtgtcggtt ctgtgtctat actcttgaac acagcaaagg ctcaagagga
      841 cccaagcttc tctgcaacac tctccgggaa ggacgaagtt cctccaaccg agtcaaattc
      901 aactggaact gctaaattcc aggtaaatca aaacaacgat aacgaatcgc aagtctctta
      961 ctgggtgaac attactggaa tcaaggaggt aaatgaagct cacattcata atggaaccac
     1021 tggtgaaaat ggggatatag tagccaccct gtcaaactgg aaatcagcga aaggagatga
     1081 tcgtccacca aa
//
LOCUS       DATLQL010000310         1049 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_255827, whole genome shotgun sequence.
ACCESSION   DATLQL010000310 DATLQL010000000
VERSION     DATLQL010000310.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1049)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1049)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1049
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_255827"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..359
                     /locus_tag="VNB68_03245"
     CDS             <1..359
                     /locus_tag="VNB68_03245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36395.1"
                     /translation="EVIIKKQAYENKIRMEMQQQQMCPMLIYKVPSFMLWIFVLPAIF
                     GATTSLSPIHIPWIMSDDKNVRTDTQLDNIGQPKGSFIVSAQVYLWGLLLITSFAFSG
                     IISKITKTSMPSLTRN"
     gene            356..961
                     /locus_tag="VNB68_03250"
     CDS             356..961
                     /locus_tag="VNB68_03250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidylate kinase family protein"
                     /protein_id="HVD36396.1"
                     /translation="MKKRSGFQKLGIVISGWPAVGKTTVAREMAREFGLKLYNGGDIL
                     KMIAKEKGYSITGMDWWDTDDAKKFMAERKANLFFDKKVDEALLKIMDKENAVITSYT
                     LPWLVNRPFLFKIWLKGSENNRAKRMADRDGIRLDAAQRIIKVRDSENKVIYRNLYGF
                     DFGSDLTVFDFFLNTDLINLKSLIEISISTIKHILSDSKTH"
BASE COUNT          339 a          190 c          216 g          304 t
ORIGIN      
        1 ttgaagtaat aataaagaaa caagcatacg aaaataaaat tagaatggaa atgcagcaac
       61 aacaaatgtg tcctatgtta atctacaaag tgccatcatt catgttgtgg attttcgttt
      121 tgccagctat ttttggagct actacctctc tcagtccaat tcatatcccc tggataatga
      181 gcgatgacaa aaatgtgcgt actgatactc agcttgacaa cattggtcaa cctaaagggt
      241 cattcattgt ctcagctcaa gtttacctgt ggggattgct tcttatcaca tcatttgcgt
      301 ttagtggcat catatcaaaa attaccaaaa cctctatgcc cagcctgacc agaaattgaa
      361 gaaacgaagc gggttccaaa agctgggtat tgtcatatcc gggtggcccg ctgtcggaaa
      421 gaccactgtt gcaagggaga tggcacgaga gtttggtcta aagctctata atggaggcga
      481 tattctgaaa atgattgcta aagaaaaagg atattcgata acagggatgg actggtggga
      541 tacagatgat gccaagaaat tcatggctga aagaaaggca aacttatttt ttgataaaaa
      601 agtagatgaa gcactgttga aaattatgga caaagagaat gctgtaatta cgagttatac
      661 tttgccgtgg ttagtaaacc gtccctttct atttaagatt tggctcaaag gatctgagaa
      721 caatagggct aaaagaatgg ccgatcgaga cggcataagg ttagacgctg cacaaagaat
      781 aataaaagtg cgtgattctg aaaacaaagt gatctatcgc aatttatacg gctttgattt
      841 tggatctgat cttacagttt ttgatttttt tctgaatacc gacttaatta atttaaaatc
      901 cctgatagaa atatccataa gtacaattaa gcacattctg tctgattcga aaacccattg
      961 aatctaatcc atactgtgct ggcagttctc ctagaacttc gataccgtaa cgtcatttca
     1021 tgtttctgct gctctagtcc atgacctgg
//
LOCUS       DATLQL010000311         1052 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2389061, whole genome shotgun sequence.
ACCESSION   DATLQL010000311 DATLQL010000000
VERSION     DATLQL010000311.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1052)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1052)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1052
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2389061"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..609
                     /locus_tag="VNB68_03255"
     CDS             <1..609
                     /locus_tag="VNB68_03255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HVD36397.1"
                     /translation="DGVIKYRLLPTLKLYKIGVRLDMVNEDPKKPLPEKDVKQIEPKK
                     FALSAEDKCFIRELQKDLRIVSEPFNEPARNLGISVQELFERANQYQISGIMRRFAAI
                     LRHRDVGFTANGMVVWKVPLDKVDEVGYKLALFPQVSHCYRRPIYPDWPFNLFSMIHA
                     RTIKAAENIASEMSRHTGMNEYKILFSSREFKKERVKYFVEN"
     gene            701..775
                     /locus_tag="VNB68_03260"
     tRNA            701..775
                     /locus_tag="VNB68_03260"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:736..738,aa:Gly,seq:ccc)
BASE COUNT          338 a          191 c          223 g          300 t
ORIGIN      
        1 gatggcgtca ttaaatatag attattaccc acgttgaagc tttacaaaat cggggtcagg
       61 ttggacatgg ttaatgagga cccaaaaaaa ccacttccag agaaggatgt aaaacagata
      121 gagccaaaga aattcgcact ctctgcggag gataaatgtt tcataagaga acttcaaaaa
      181 gatcttagga tagtttcgga accatttaac gaaccggcca gaaatcttgg tatttcagtt
      241 caagaacttt ttgaaagggc aaatcaatac caaatctctg ggataatgag acgatttgca
      301 gccatattaa gacatagaga tgttggtttt accgcaaatg ggatggtggt ttggaaggtg
      361 ccgctagaca aagtcgacga ggtcgggtac aaacttgcgt tatttcctca ggttagccat
      421 tgttacagaa ggccaatata cccggactgg ccattcaatt tgttcagcat gattcatgca
      481 agaacgatca aagctgcaga gaacattgca tccgaaatgt ctcgtcatac tggaatgaat
      541 gaatataaga tactttttag ctcgagggaa tttaagaaag agagagtaaa gtactttgta
      601 gaaaattaga tactttggga ctattcttaa ccttcttgac tcattaaagt ccttttgaca
      661 aacaaagatt cttattaaat ttgtaaacat ttcgcttcgc gcgaagttag cccagcctgg
      721 ttaaggtacg agcttcccaa gctcgggatc gcgggttcaa atcccgcact tcgcactcta
      781 aggttttgcc tagttgtttc aatgacacaa aacttccatt tctttggaat tttcaaggtt
      841 aaggtgttgc ggtgaggctc gagaaaaagt ctttcggaac caagtcggct ctattgaggt
      901 ctacaaaagt tctacatcag ccttgtccat atgtcaaaac gttgatacac atattcatgc
      961 tcagaagtta ttagtaaatt ctttacggtt aatcatgtgg ctgaaattgc gttgagaaaa
     1021 ttttaccata aaatgtaaca aaaaaagttc ta
//
LOCUS       DATLQL010000312         1635 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_435122, whole genome shotgun sequence.
ACCESSION   DATLQL010000312 DATLQL010000000
VERSION     DATLQL010000312.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1635)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1635)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1635
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_435122"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..248)
                     /locus_tag="VNB68_03265"
     CDS             complement(<1..248)
                     /locus_tag="VNB68_03265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36398.1"
                     /translation="MEDKIEDTFDKLKAGAKAVAEKVTHPDKDMGAEYDKEKHKEKMS
                     DSEHDANCGCGHEHSDDHGSREPMNPDQISKNEPTAVK"
     gene            416..952
                     /locus_tag="VNB68_03270"
     CDS             416..952
                     /locus_tag="VNB68_03270"
                     /inference="COORDINATES: protein motif:HMM:NF025774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MEDS domain-containing protein"
                     /protein_id="HVD36399.1"
                     /translation="MQSQFGNHNLILYTNRETLRNICSKYCKTALDSSSEIVLILTYY
                     DSVKDWLIYLKGNGICVEKYKNDGSLVVIESRKGFFGLLNDFVGIMIMIRMLLRRANN
                     LAKKGLTIISDMGVFFPNRIEDLIKHETEISTSIRDLKVKIYCVYNKPDFESLREERR
                     QLLDGNHNELISVEDSEE"
     gene            1058..1504
                     /locus_tag="VNB68_03275"
     CDS             1058..1504
                     /locus_tag="VNB68_03275"
                     /inference="COORDINATES: protein motif:HMM:NF012730.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005267 - potassium channel activity
                     [Evidence IEA];
                     GO_process: GO:0034220 - monoatomic ion transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium channel family protein"
                     /protein_id="HVD36400.1"
                     /translation="MISKDDTMNTIFYLLVASGVAVIVGTVIMYNLESGAENSKMTTL
                     LDALWWCVATVTTVGYGDVVPVTNLGRIVALVYMFFGISLIATLLAVISNTFYKKRIL
                     KEETEKREQDENYLRNLVMSKLADIERKQSECIETVNRLRSSIENK"
BASE COUNT          514 a          292 c          329 g          500 t
ORIGIN      
        1 ctcttgaccg cagtaggttc gtttttgctt atctggtctg gattcatcgg ttctctgctt
       61 ccatggtcat cggagtgttc gtgaccgcat ccacaattgg cgtcatgttc gctgtctgac
      121 attttttctt tatgcttttc tttgtcgtat tcagcgccca tatctttatc tgggtgtgta
      181 accttctcag caacggcttt ggctcctgcc tttaacttgt caaacgtatc ttcaatttta
      241 tcttccatga catcaactac acaacaaatt agttaaaggc tgcataccgt ggatgaatga
      301 ctcactccaa acacttaatt catcattact tgattgcttt tttagctagt tttgcaaatc
      361 cgtcgttaaa cgataaaagt tctaatctta catatttgga aactaattaa aagatatgca
      421 aagccaattc ggaaaccaca atttgatctt gtatacgaac agagagacac tacgaaatat
      481 ttgttcaaaa tactgcaaaa ctgcattgga ttcttcaagc gaaatcgttc tcattctaac
      541 ctactatgac tctgtcaaag attggttgat ctatttgaag ggtaatggta tttgcgtaga
      601 aaaatacaaa aatgacggtt cactggtagt tatagaatca agaaaaggat tttttggttt
      661 attgaacgat tttgtaggaa ttatgatcat gataagaatg ctacttcggc gagcaaacaa
      721 cttagcaaag aaaggattaa caataatctc tgatatgggt gttttctttc cgaaccggat
      781 tgaagatcta atcaaacatg aaacagaaat ttccacgtcg atacgagatc tgaaggtgaa
      841 aatctattgt gtttacaata aacctgattt cgagagcctc cgagaagaac gaaggcagtt
      901 attagatggc aatcataatg aacttatttc agtagaagac agtgaggagt gaaaatagct
      961 ttttgaccat gcttgtcaca gccatcaact tgtccaccca aatatatgaa ggccgtatag
     1021 aggacttcga tcatatgggc tcaaattact tttataattg atctccaaag atgatactat
     1081 gaacacgatc ttttatcttc ttgtggcgtc gggtgtagcc gtaatcgttg gtactgtgat
     1141 catgtacaac ttggagtcag gggcagagaa ttcaaagatg acaacccttc tagacgcttt
     1201 gtggtggtgc gttgcgacag ttactactgt gggatatgga gatgttgtgc cagttaccaa
     1261 tttaggaagg atagtcgcat tagtttacat gttttttggg ataagcttga ttgccacctt
     1321 gctagctgtg atttccaata ccttctacaa gaaaagaatt ttgaaagaag agactgaaaa
     1381 gagggaacag gacgagaatt accttagaaa tctggtcatg agtaagcttg cagacataga
     1441 aagaaaacaa tcagagtgca tagaaacggt gaataggctt cgctcgtcga ttgaaaataa
     1501 gtagaaatat gataacctgc tcaaataata gataaaaact acctaaaaaa gtgacaaatc
     1561 tctgtctgaa tatcaaaata aatatcgcgt ttactgagtt tatgtcaacc ccaattgtgc
     1621 agaactagag gggaa
//
LOCUS       DATLQL010000313         1003 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_78573, whole genome shotgun sequence.
ACCESSION   DATLQL010000313 DATLQL010000000
VERSION     DATLQL010000313.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1003)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1003)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1003
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_78573"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..461
                     /locus_tag="VNB68_03280"
     CDS             <1..461
                     /locus_tag="VNB68_03280"
                     /inference="COORDINATES: protein motif:HMM:NF015126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="EF-Tu/IF-2/RF-3 family GTPase"
                     /protein_id="HVD36401.1"
                     /translation="ILGVVKQGKVSVHDELLILPQGKKVFVKSIQMHDDSADEAISPA
                     RVGLALKGISAIDISRGDVICDPGYLSTSTALVKAKFKKNRYFKEEMSETHTYLLAVG
                     LQLKPVKIRFLEDQIELELLKPLVFSPGQHFVVIKPDASGVRVCGKGEII"
     gene            461..877
                     /locus_tag="VNB68_03285"
     CDS             461..877
                     /locus_tag="VNB68_03285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36402.1"
                     /translation="MVRILKENGNGYSNEDKKTEIDPMKALSQEVKLLLDSVKAKGII
                     TTLNVDEENGIMRIYLNNTNELKRALSAVSEILDLAYSTTEHHPYSLLLYHSTEILRS
                     VLDSWGDTLTADGLSEIAWRIDEIRSNIDRISTSDQ"
BASE COUNT          340 a          180 c          208 g          275 t
ORIGIN      
        1 tcatccttgg agttgtcaaa caagggaaag ttagtgttca tgacgagcta ctaattcttc
       61 cacaagggaa aaaagtattt gttaagtcaa ttcagatgca tgatgattct gcagatgaag
      121 ccataagtcc tgctagggta gggcttgcac taaaagggat atctgctatt gacatctcaa
      181 gaggtgacgt aatttgcgat ccagggtatc tcagtacttc aactgctttg gttaaagcga
      241 aatttaagaa aaatcgatac ttcaaagaag agatgagtga aacacatacg tacttgctcg
      301 ctgtcggact tcagctgaaa cctgttaaaa ttagattcct agaagatcag attgaactag
      361 agcttcttaa accacttgtt ttctctccgg gtcagcattt tgttgttata aaacctgatg
      421 caagtggagt gagagtctgt ggaaagggtg aaataattta atggttcgaa tattgaaaga
      481 aaatggaaac gggtatagca atgaagacaa aaagacagaa attgacccca tgaaggccct
      541 ctctcaagaa gtcaaattac ttctagatag tgttaaagca aaaggcatca ttacgacatt
      601 gaatgttgac gaagaaaacg gaatcatgcg aatatacttg aataatacaa atgaacttaa
      661 acgagcgcta tcggcggtat cggaaatact tgaccttgct tactcgacaa cagaacatca
      721 tccctattcg cttttgcttt accactctac agaaatatta cgctctgtac tcgactcatg
      781 gggggacaca ctgaccgcag acggactatc cgaaattgcg tggcgcatcg atgaaataag
      841 gagcaacatt gacagaatta gcacatctga tcagtgaata aattttccat ttgagcttct
      901 cagttttatc aaggttgatt ttaatttcca aaccttacaa aactttcata atatggtttc
      961 aaaactgtaa aagaacaagt ggtaatagga ccaaggagta tta
//
LOCUS       DATLQL010000314         2373 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_256489, whole genome shotgun sequence.
ACCESSION   DATLQL010000314 DATLQL010000000
VERSION     DATLQL010000314.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2373)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2373)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2373
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_256489"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            274..795
                     /locus_tag="VNB68_03290"
     CDS             274..795
                     /locus_tag="VNB68_03290"
                     /inference="COORDINATES: protein motif:HMM:NF015060.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TspO/MBR family protein"
                     /protein_id="HVD36403.1"
                     /translation="MKTPPVSYRKDSLRLGISIAAPLIAGVIGSIFTSESVSTWYQTI
                     EKPSFSPPNWLFGPVWTTLYVLMGISLFLIWRATSTATFPTARRNRKIAAFIAFGSQL
                     ILNVLWSFIFFGLRSPQLAFAEIVILLISIVVTIVIFYKISRLAAVLMMPYAGWVTFA
                     SFLNLQIWLLNSS"
     gene            1198..1656
                     /locus_tag="VNB68_03295"
     CDS             1198..1656
                     /locus_tag="VNB68_03295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36404.1"
                     /translation="MNRSRLKDYLLFNRNILIGFAGAFLTGAGISQAIAGLTSPLVNS
                     LISLVTETSVFFAIFGILFYFDNKAKFVDEQGKSREFARVKWVLLKLASTLSIAEIEY
                     NTVKPTIHFWLLTLDYPPFVASTIANLITIIGYLAVADSMAYLTRLFKKP"
     gene            1793..2218
                     /locus_tag="VNB68_03300"
     CDS             1793..2218
                     /locus_tag="VNB68_03300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36405.1"
                     /translation="MALGEKLFEESGNVTGFKVTKVHPIEGVTMEVSFTSEIKGIGRF
                     PSGKNLGSGTMTQYPHGIVDGGYQGSITTTEGGDQFVWWAHEKTKAVEGGRKFKGLTM
                     MTGFTTSQKLSWMNNLIIALDLESDPESQKFKATASEWE"
BASE COUNT          722 a          412 c          525 g          714 t
ORIGIN      
        1 acatacaaag aaaaaagaat ggagcggttg ggatttgaac agccttcttt ccattaaccg
       61 cggatagtat tagaatatag aatagctgac tgaggtcgtg ggttcaaatc ccacccggtc
      121 catttcttcc tgttatagaa ctacggtatt gaattgagtt catttttcag ttattgtcgg
      181 acaaattcag cagcaatgca gtgcatggca atgaattctt actgcgttaa tatgcaagaa
      241 gatacaatct gtatatgagc ggggaaaatt attttgaaga caccgcctgt atcctatagg
      301 aaagatagtc tgcgcctggg aatttcaatt gcggctcctt taatagcagg tgtgattggc
      361 tccattttta cctctgaatc tgtctcgaca tggtaccaaa ctattgaaaa accatcgttc
      421 tctcctccaa attggctctt tggtcctgtg tggaccacgc tttatgtcct gatggggata
      481 tccttatttc ttatctggag agcaactagt actgctactt tccccacggc tagacgcaat
      541 agaaaaatag ctgcgttcat tgcatttggt tctcaactaa tcttaaatgt actgtggtca
      601 ttcattttct ttggtctaag gtcgccgcag ctcgcatttg cagaaattgt gatattgttg
      661 ataagtatcg tggtaaccat agttatcttt tataaaatat cacgactagc agcagtattg
      721 atgatgccat atgctggatg ggttaccttt gcatccttcc ttaacctgca gatatggttg
      781 ctaaattcct cctagtacat tagaaatccc aacattcgtt atgggacaga atttcgggat
      841 tgagatagtt actgaattga aatgctcaaa tttgtattgc atatggtttt tcataggaaa
      901 caggcaggat gatactaatt tggaattgtg cttggaatcg aggaagaaag aaaatctaga
      961 gagtagctag agaagaggta gtgtatattc tgcttaccaa acacaataca atctagacca
     1021 aagtggaccg ggtggatttg aacagtatgg tcctctgttg gcagctccgc tctttagata
     1081 attgattagc caagctggct gaggtcgtgg gttcaaatac cacatcgttt aggaatgcac
     1141 ttgaaatgga agaaagggaa ttaaagtgag gaagttttta agtggatagg cagttaattg
     1201 aataggagtc gattaaaaga ctatctttta tttaacagaa atattcttat tggctttgct
     1261 ggtgcatttc ttactggcgc tggaattagc caagcgatag caggattaac gtctccgctt
     1321 gttaattctt taatctcgtt agttactgaa acgagtgtat tctttgcaat attcggtatt
     1381 ctattctatt ttgacaacaa agccaagttt gttgacgaac aaggaaagag tagagaattt
     1441 gcgagagtaa agtgggtctt attaaaacta gcatctacac tttcaatcgc agaaattgaa
     1501 tacaatactg taaaacccac tattcacttt tggctcctaa ctttggatta tccacccttt
     1561 gttgcttcaa ccattgcaaa tcttattact ataatagggt acctcgctgt tgcggactct
     1621 atggcatatc ttactcgttt atttaaaaaa ccatagtatg gactcgtgag agattaagca
     1681 ggtagaggct aaagcggaag gtccttggaa gttgtaggac aaaacccact ttggatactg
     1741 ctgatgactg taaaaacccc ttatacgtta ggtgatgaaa ttctagctcg gtatggcgct
     1801 gggagaaaaa ctctttgaag agagtggtaa tgtaacaggg ttcaaagtaa caaaggttca
     1861 cccaatagag ggagtaacca tggaagtgag ttttacatct gagataaagg gaatcggaag
     1921 gtttccaagt ggtaagaatc taggttcagg tactatgact caatatcctc atggcatagt
     1981 tgatggtggt taccaaggtt caataacgac aactgaaggt ggtgaccaat tcgtgtggtg
     2041 ggctcatgaa aagaccaaag cggtagaagg aggcagaaag ttcaaaggat taaccatgat
     2101 gacaggattt acaacctcac aaaagttatc ttggatgaat aatctaatta tagcacttga
     2161 cttagaatct gatcctgagt cccaaaagtt taaggcaact gcatctgaat gggaatagtt
     2221 gttaatatga agaagaagaa aaaaatagac aagaagaaac ataacacaag cggcgctgtg
     2281 agctgaggtc gtgggttcaa ttcatcccac ccagtccatt tctttctgtg atgaaactat
     2341 ggtattattt tgagcttgat tttaacaatt gta
//
LOCUS       DATLQL010000315         1314 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2563810, whole genome shotgun sequence.
ACCESSION   DATLQL010000315 DATLQL010000000
VERSION     DATLQL010000315.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1314)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1314)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1314
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2563810"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1078)
                     /locus_tag="VNB68_03305"
     CDS             complement(<1..1078)
                     /locus_tag="VNB68_03305"
                     /inference="COORDINATES: protein motif:HMM:NF014011.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003896 - DNA primase activity [Evidence
                     IEA];
                     GO_process: GO:0006269 - DNA replication, synthesis of RNA
                     primer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase small subunit domain-containing
                     protein"
                     /protein_id="HVD36406.1"
                     /translation="MSLKTSSENSSFLKGLFREYYFKDSNSLVTPSMIEKREFGYMSF
                     DSIMVRHLSFKNKKELIARLVQESPSDVYCSNGYYKFPTNSVQSKEWEGADLIFDIDL
                     KDLNTPCSSEHSFYVCDQCGACNVSFLNACTVCLGRKISRTSIPCRKCLISLKKETQR
                     LIEFLHGDLGIADGSIEIFFSGNAGYHIHVSDSEFKTLDSRARSDLVDYICGNGIMNE
                     SIGVRKSKNGFYIKFPKSGMVFGWRRRVASEFGINQSSISKLKRIVESSGGYGQFKED
                     LSTKAKLIGVRIDPHVTTDIHRIFRMPGTINGKSSLLKVKSTNLETFNPLDSACVLDD
                     RQVYIRSKVNLKLYLHENYFRIKNS"
     gene            complement(1075..>1314)
                     /locus_tag="VNB68_03310"
     CDS             complement(1075..>1314)
                     /locus_tag="VNB68_03310"
                     /inference="COORDINATES: protein motif:HMM:NF016030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36407.1"
                     /translation="LAIGKNTDEIVTMFQNSPDYNEKVTRYQIEHLAGNKGSRIKYSV
                     PSCKRLQSEDLCFATVDCENILNPIQFGRKKANTQ"
BASE COUNT          378 a          266 c          234 g          436 t
ORIGIN      
        1 tagagttttt aattctgaag taattttcat gaagatataa tttcaaattg actttgctcc
       61 gtatgtatac ttggcggtcg tctagcacac atgcagagtc aagcggatta aatgtctcca
      121 aattagtgct ttttacttta agtaagctac ttttaccatt gatcgttcca ggcattctga
      181 atatacgatg tatatctgtc gtaacgtgag gatcgatacg aactcctatc aatttggctt
      241 tagttgagag atcttccttg aattgaccgt agcctccact tgattccacg atcctcttta
      301 gcttcgaaat tgatgactga ttgatcccaa attcactggc tactcgtctt ctccatccaa
      361 ataccatgcc gcttttagga aatttgatat aaaagccatt cttggatttg cgaactccga
      421 tgctttcatt cattatgcca ttcccacaga tgtaatcaac aagatcagac ctggctcttg
      481 aatcaagagt cttaaactct gaatctgata cgtgtatatg gtatccagca tttccagaaa
      541 aaaatatttc tatacttccg tcagctattc cgaggtctcc gtgtaaaaat tcaattagcc
      601 gttgtgtttc cttcttaaga gaaatgagac attttctaca aggaattgaa gtgcgagaaa
      661 tttttcttcc caaacaaacg gtgcatgcat taagaaaact tacattgcat gcgccacact
      721 gatcacacac atagaaggag tgttctgatg agcagggtgt attcaggtct ttaagatcta
      781 tatcgaagat aagatcagcg ccttcccatt ccttgctctg aactgaattc gtcggaaatt
      841 tgtagtagcc gttagagcaa taaacgtctg aaggtgattc ttgaactaat cttgcaatta
      901 attctttctt gttcttgaaa gagagatgcc ttaccataat ggaatcaaat gacatgtatc
      961 cgaattcacg tttttcaatc atagaaggag taactaacga attgctatct ttaaaataat
     1021 attctctgaa caggccctta agaaacgagc tgttttcaga tgacgtcttc aggctcattg
     1081 agtattcgct ttctttcgtc cgaattgaat tggattcaat atattttcgc agtctacagt
     1141 agcaaaacaa agatcctcgc tttgtaatct tttacacgaa ggtactgaat attttatacg
     1201 gctcccctta tttccagcga gatgctcaat ttggtaacga gtcacctttt cgttatagtc
     1261 aggagagttc tgaaacatag ttactatttc atctgtattc ttgcctatcg ccag
//
LOCUS       DATLQL010000316         1007 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_79441, whole genome shotgun sequence.
ACCESSION   DATLQL010000316 DATLQL010000000
VERSION     DATLQL010000316.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1007)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1007)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1007
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_79441"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..943)
                     /locus_tag="VNB68_03315"
     CDS             complement(<1..943)
                     /locus_tag="VNB68_03315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36408.1"
                     /translation="MDRGKSLTTAEFINNFPFASQRAKQVRILEEICTAFNSGYKYIV
                     LEAPTGFGKSPVAISVATTLGSSYICTSTKDLQTQYSKDFPYINAAKGKNNFPCLVKE
                     DFVRNGTYRCGVCVSDDTNECRHATVGYGPCITDEFFRDSCKYRTLLKDYKIAFKGSG
                     DERVFIDSDRKDHYLKEYSQWLHLKNLKDRRIWKPCEYFDQLNMALTSSHSIFNYSNF
                     LAFLLQSKKGLPSRELLVLDEGHLLETEIVKFRGLSISKRRWKRYLTENRLKIIDFGY
                     NDIEKWIDFLIELEAIMLNLLGYDSMVESLDVQRKIKY"
BASE COUNT          290 a          208 c          167 g          342 t
ORIGIN      
        1 tatatttgat cttcctttgt acatctaatg attctaccat ggagtcataa ccaagtaggt
       61 taagcataat tgcctccaat tcaattaaaa aatcgatcca cttttctata tcattgtagc
      121 caaaatcgat tatctttaga cgattttctg taagatatct tttccatctt cttttggata
      181 tggataatcc tctgaatttt actatttctg tttccaatag atgtccctca tccaatacca
      241 agagttctct tgaaggtaga ccctttttgc tttgcagtaa gaacgccaag aaattagaat
      301 aattgaatat agaatgactt gaggttaagg ccatattcag ttggtcaaag tattcacagg
      361 gcttccatat tcttcgatct tttagatttt tgagatgcag ccattgcgaa tattccttga
      421 gataatggtc tttacgatcg ctatcgatga acactcgttc gtcacctgag cccttgaacg
      481 ctattttgta atcttttaga agggttctgt acttgcagct atctctgaag aattcgtctg
      541 taatgcatgg cccatatccc actgttgcat gacggcattc atttgtatcg tctgaaacac
      601 acactccaca tctatatgtg ccgtttctca caaaatcttc ttttaccaaa caaggaaagt
      661 tattctttcc ctttgctgca ttaatatatg gaaaatcctt tgaatattgg gtctgtaaat
      721 cctttgttga agtacatata taacttgagc ccaaagtcgt agcaacagat atagctaccg
      781 ggctcttacc gaaaccagta ggagcctcga ggacaatgta tttgtaaccc gaattgaaag
      841 cggtacaaat ctcttctagt atcctcacct gtttagcacg ttgggacgca aatggaaaat
      901 tattgataaa ttcagctgta gtcaatgatt tgcccctatc caagtaacat cctcatcacc
      961 ttttcaataa ctaatctatc tgtcgtacca ttagtagata aggatgt
//
LOCUS       DATLQL010000317         1295 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1322404, whole genome shotgun sequence.
ACCESSION   DATLQL010000317 DATLQL010000000
VERSION     DATLQL010000317.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1295)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1295)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1295
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1322404"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..711
                     /locus_tag="VNB68_03320"
     CDS             <1..711
                     /locus_tag="VNB68_03320"
                     /inference="COORDINATES: protein motif:HMM:NF012401.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HVD36409.1"
                     /translation="VSNKIGGDLISTAIWKGVRLKDLLEKARVKPTAKYIVFRCFDGY
                     DVGIPLERGLLEGTILAYDMNGSPLTSEHGYPVRAIVPGIYGMMNAKWMTEIELVDKV
                     YEGYWQRKGWSNIAKYNTHSFIIIPGNAPIRKRFRNLEVSNVNGTVPVAGMAFAGDRG
                     IVKVEVSTDEGATWKIAKIKDPLSQYTWVFWNAELDLTGNNHKIVVRATDKTGKIQTD
                     QIQDPFPNGATGYHTIDV"
BASE COUNT          435 a          210 c          276 g          374 t
ORIGIN      
        1 gtaagcaata agataggagg cgatttgatc agcactgcca tatggaaagg agtacgccta
       61 aaagaccttc ttgagaaggc acgtgtgaag ccaactgcca aatatattgt ctttagatgt
      121 ttcgacggct atgatgttgg aataccttta gagagaggac ttttggaggg cacaatatta
      181 gcttatgata tgaatggttc tcctctgact tctgaacatg gctatcctgt aagagccata
      241 gttcctggca tatatggtat gatgaatgcg aagtggatga ctgagataga gctggtcgac
      301 aaagtttacg aaggctattg gcagaggaag ggttggagta atatagctaa atacaatact
      361 cattcattca taattattcc aggtaatgca cctatcagaa aaaggtttag gaatttagag
      421 gtttcaaatg tgaatggaac ggtgccagtt gcaggcatgg ccttcgccgg agatcgaggg
      481 atagtgaaag tcgaggtaag tactgatgaa ggtgctacct ggaaaattgc caaaatcaaa
      541 gacccactgt cacaatatac atgggttttc tggaatgcag aattggatct gacaggcaat
      601 aaccataaga tcgtagtcag agctacagac aagactggaa agatccagac tgaccagata
      661 caagatccat ttccaaatgg agcaacaggt taccatacga tagatgtata atataatggt
      721 aaaacaagat tttgggatat cttaaagaga taggaaggaa tcatgatata aaaaaaaccg
      781 aagcagattt gaattgcaac attgaataat aaggccttcg agaatattcg attattcgtt
      841 aactagaatc tttggtattt aaaaatagct aggcgggctc ttccaccatg gaacaaatac
      901 atgggctgga agtcagcgaa actgaaatca aacattattg ttgattaaac aataggatac
      961 atacatacat acatacccct ttattcttcc agtctatttt ttgtctacca gacttgtcca
     1021 attcgtccat tacaaatagt ctattctaaa gaatccatat tattgcccta tttatggaaa
     1081 agtggtgtta gaatacccta tgattaaatc gcgattgtca gattcgatgt tatttacgtg
     1141 tactatcatt attgtagact gataacagag aagttttata gtagaaatct ctataattta
     1201 tcatgatata tgataaaaca gttcgttgtt cttgttgttg ttattgtctc agtgttttgc
     1261 cacaacaaga taacaaagca tccttgatca gagta
//
LOCUS       DATLQL010000318         1837 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1853743, whole genome shotgun sequence.
ACCESSION   DATLQL010000318 DATLQL010000000
VERSION     DATLQL010000318.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1837)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1837)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1837
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1853743"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1345)
                     /locus_tag="VNB68_03325"
     CDS             complement(<1..1345)
                     /locus_tag="VNB68_03325"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HVD36410.1"
                     /translation="MIEGGGLDGLRTQVRSVTADIIHLVKKRMDIAQKIGDIKNRFNI
                     QIEDEAVEQEIQNHAQELGRQIGLDRNFIGRLLNLLLTESVRIQKNQTSKQPDHLNHM
                     TMFMRAKKLESEGKKIIHLEVGEPDYLPPRSVKDALVKAYERGQVRYTEPRGISSLRT
                     EISKQFHGVEKDQVIVTPGARYAVFSGIVAAVSIGEEVLILEPAWPAYKECAEFIGAK
                     TKVINTSLEKGWEPEFEQIKNLISKNTRMLILNYPNNPTGKIITQDILQKILGLAQEN
                     GIFVLSDEVYAGYAYSKFKSILDYGYDKSIMVSSFSKSYAMTGFRIGYAIGSRNIINK
                     MTQIQAVAITSVAEPIQYAALSALRNKPTNNAQRIKKRLEFMNKRLKEMPLEFRPPDG
                     GMYFFVRFNGDTKNTMDIIEDLLQKGVAVAPGIGFGRCYGNFLRISACQPIGILER"
     gene            complement(1338..>1837)
                     /locus_tag="VNB68_03330"
     CDS             complement(1338..>1837)
                     /locus_tag="VNB68_03330"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004107 - chorismate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HVD36411.1"
                     /translation="DSVGGIIECIATGLPVGLGEPIFSSMESDLSKALFSIPAVKGVE
                     FGSGFGGSRLKGSENNDEYVVSNGKIVTTTNNSGGIIGGLTSGMPLVIRIGFKPASSI
                     AKKQRSVNLLTCSECEITVPGRHDPCVVPRAPPVVESLVSLIISDHAIRGGFIPSILK
                     AKKND"
BASE COUNT          492 a          429 c          298 g          618 t
ORIGIN      
        1 ccctttctag aattcctatt ggttgacacg ctgaaatcct caggaaattt ccatagcacc
       61 ttccgaatcc gatacctgga gccacagcaa ctcccttttg aagtaaatct tcaataatat
      121 ccatagtatt ctttgtatct ccattaaaac gaacaaaaaa gtacattcct ccatctggag
      181 gacgaaactc aagaggcatt tcctttaatc ttttattcat gaactccaat ctctttttga
      241 tccgctgggc attatttgtg ggcttatttc gtaaggccga aagtgcagcg tattgaatcg
      301 gttcagctac acttgtaatt gcgacagctt ggatttgtgt cattttattt attatatttc
      361 tactaccaat tgcgtagcct attctaaatc ctgtcattgc ataactttta gaaaacgaag
      421 agaccatgat gctcttgtcg taaccataat ccaaaatact cttaaatttc gaatatgcat
      481 atcctgcata tacttcgtca ctcaacacaa aaatgccatt ctcttgagca agaccgagta
      541 ttttttgaag aatgtcttgt gtaattattt tcccagtcgg attatttgga tagtttagaa
      601 taagcattct agtattttta gaaattaaat tctttatttg ttcaaattca ggttcccaac
      661 ctttttcaag agatgtattt atgactttag tctttgcacc tatgaactct gcacattctt
      721 tatacgccgg ccatgctggt tctaaaataa gaacttcttc tccaatacta acagcagcca
      781 caattccact aaatacagcg taccgggctc caggagtgac aatgacttga tctttttcaa
      841 cgccgtgaaa ctgttttgat atttccgttc ttagactaga aattcctcgc ggttccgtat
      901 agcgcacttg gcctctctcg taggctttta ccaacgcgtc tttaaccgaa cgtggtggta
      961 aataatctgg ctcacccact tctaaatgaa tgattttttt gccctcagat tccagcttct
     1021 ttgctcgcat aaacattgtc atatgattca agtggtctgg ttgtttcgaa gtctgattct
     1081 tctgaattct tacagactct gtaagtaaca aattcaacaa tctgccgatg aaattcctat
     1141 ctaaaccaat ctgtctgccc aactcttgag catgattttg tatttcctgt tctactgctt
     1201 cgtcttctat ttgtatattg aatctgttct ttatatcgcc aatcttttgc gctatatcca
     1261 ttcttttctt tactagatgt attatatctg cggtcactga cctcacttga gtcctaagac
     1321 catctagtcc tcccccttca atcattcttt ttagccttca agatagatgg tatgaatcct
     1381 ccacgtattg catgatcgga tatgattaac gatactaaag attcaacaac tggcggcgcc
     1441 cttggtacga cgcaaggatc atgtctgcct ggcacggtaa tctcacactc tgagcatgtc
     1501 aataaattaa cagatcgttg ttttttggca atggacgaag ctggtttaaa tcctatccgg
     1561 attaccaaag gcatcccact agtcagtcct ccgataatcc cgcctgaatt atttgttgta
     1621 gtaacaattt ttccgttgga gacaacatac tcgtcattat tttctgatcc cttcagcctt
     1681 gatcctccga atcctgaacc aaattccacc cctttaacag caggaatgct aaaaagagcc
     1741 ttacttagat cggattccat cgacgagaat attggttcgc ctaatcccac aggtagtcct
     1801 gtcgctatgc attctatgat accacccact gaatcgc
//
LOCUS       DATLQL010000319         2110 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_613437, whole genome shotgun sequence.
ACCESSION   DATLQL010000319 DATLQL010000000
VERSION     DATLQL010000319.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2110)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2110)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2110
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_613437"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..889
                     /locus_tag="VNB68_03335"
     CDS             <1..889
                     /locus_tag="VNB68_03335"
                     /EC_number="2.5.1.141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008495 - protoheme IX farnesyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0048034 - heme O biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="heme o synthase"
                     /protein_id="HVD36412.1"
                     /translation="LIPQLTVGNRIKNYYELTKPKIWYLLVFTAFGAALTASLLFKIE
                     VTPLQWFLLLTGVAAGSAAADTITGYNDRDIDAIMERTKARPIPSGRISPRNALIFGL
                     ILTTVSLVCAWLINYIALGLMAFGLFDNIIVYSKWLKRRSQANIILGGFSGAAPALIG
                     YVAVTTQNIEIGLVMAALVFFWIPTHIWSLALHVKKDYTKARVPMLPVVADERTSVRV
                     IAITTLLMVAFSIVPFFLNQFGLIYLITATVFGIVMILLSTWLMVRPSERASWMVFKF
                     SSPYLTALFIAFILDAAFH"
     gene            complement(883..1578)
                     /locus_tag="VNB68_03340"
     CDS             complement(883..1578)
                     /locus_tag="VNB68_03340"
                     /inference="COORDINATES: protein motif:HMM:NF015545.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis protein"
                     /protein_id="HVD36413.1"
                     /translation="MFSLIIAEAGLETVPSRILDHTSVNNYARKIGRKPKEVLLDTSY
                     HFSAMTHHDLPLWWKRGRPDIVHFSLLTALSTPLFIERKLDIYVSTIENKLILISKDL
                     RIPKSYFRFEGLMMNLFRDKVINDPNGSRKLLELKENINFKDIISQIVKPNKVIALSI
                     KGIRSNPFQIIVDSVEDKNKNYCFVVGGFQRGHFQEDVKSIFDTMYSVSDYGLESHVV
                     IARILYECEKLIQ"
     gene            1804..2073
                     /locus_tag="VNB68_03345"
     CDS             1804..2073
                     /locus_tag="VNB68_03345"
                     /inference="COORDINATES: protein motif:HMM:NF015965.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36414.1"
                     /translation="MERNLLNELGIDNDWAEKQARVALRIALHSRVSIPYSLRQLFCR
                     SCKQFIIPGKTSRVRTGRSRTKSVRITCLKCMHVYRKMISPCRPR"
BASE COUNT          626 a          382 c          414 g          688 t
ORIGIN      
        1 tttgatcccc cagttgactg taggaaatcg gatcaagaat tattatgagt taactaaacc
       61 gaaaatatgg taccttttag tttttaccgc atttggagca gctctgactg catcgcttct
      121 cttcaaaatt gaagtgacgc ctttgcagtg gtttttgctt ctcacgggag tggctgctgg
      181 atcggccgcg gcagatacaa ttacaggata taacgatcgt gatatagatg caattatgga
      241 aaggacaaaa gcaaggccta taccatctgg tagaatttct ccaagaaatg cgctaatctt
      301 tggattgatc ttgactacag tatctctcgt ttgtgcatgg ttgattaatt acatagcgtt
      361 aggactaatg gcgtttggtc tgtttgacaa tataattgtc tacagtaaat ggctcaagcg
      421 taggagtcag gccaatataa tacttggcgg tttttcagga gcggcccctg cgttaattgg
      481 atatgttgca gttactacgc agaatatcga aattggattg gttatggctg ctcttgtctt
      541 tttctggatc ccaacacaca tatggagcct tgcgttacat gtaaagaagg attatacaaa
      601 agcaagggta ccgatgttac cagtcgttgc agatgaaaga acatcagttc gtgttattgc
      661 gataacaacc cttttgatgg tggcatttag catagtcccg ttcttcttaa atcaatttgg
      721 attaatctac ttaattaccg ctaccgtgtt tggtatcgta atgattctct tgtcaacatg
      781 gcttatggta agacccagtg aaagagcgtc atggatggtt tttaaatttt ccagccccta
      841 tttgactgca ttattcatag cattcatact ggatgcggcg tttcattgaa ttaatttctc
      901 gcattcatat agaattcttg cgattacgac atgggattcc aatccgtaat cgcttacaga
      961 atacatggta tcaaaaatac ttttgacgtc ttcctgaaaa tgaccacgtt gaaatcctcc
     1021 tacaacgaaa caatagtttt tatttttatc ttctacacta tcaacaataa tttgaaaagg
     1081 attgctccta attcctttta tcgaaagtgc aattacttta tttggcttta caatttgact
     1141 tattatatcc ttgaaattga tattttcctt taattcaagc aactttcttg agccgtttgg
     1201 atcatttatc actttatctc tgaagagatt catcatcaat ccttcgaatc taaaatacga
     1261 cttaggaatt ctaagatctt tgcttatgag gattaacttg ttttctatgg tcgatacata
     1321 tatgtccaat tttctttcaa tgaagagtgg ggtagaaagg gctgttaaga gtgaaaaatg
     1381 aacaatatcc ggtcttccgc gtttccacca aagtggtaga tcatgatgtg tcatcgcact
     1441 aaaatggtaa ctcgtatcaa gtaggacttc ttttggtttc cgtcctattt ttctagcata
     1501 gttatttact gaagtatgat ctaatattct tgatggtacc gtttctaatc ccgcctccgc
     1561 aataatcaaa gaaaacaata tgattcttta attgaatgag agttatttag ttactgaact
     1621 atcggcaaat tccgtcataa cacgttacgt ctcgatagac aatgttgtct ttagtcttta
     1681 ggttctcatt ggaatgttaa agcatcaaag gcaataacag atttattgta caatcagagt
     1741 actttttctt agcagttgaa aaggaacaat agcaatgcca tcgctagtga gagaattgaa
     1801 attttggaaa gaaatttact aaatgagctt gggattgaca acgactgggc agagaaacag
     1861 gcacgagtcg cactaagaat agccttgcat agtcgagtaa gcattccata ttcattaagg
     1921 cagctatttt gcaggagttg taagcaattt atcatcccag gtaaaacttc gagagtaaga
     1981 actggcagat ctcgaacgaa atctgtgcgt ataacctgtt tgaaatgtat gcacgtatat
     2041 agaaaaatga tatctccgtg ccgcccaaga tgagaaaaat ccggattacg ttagcttaac
     2101 taggaatcaa
//
LOCUS       DATLQL010000320         1102 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_257468, whole genome shotgun sequence.
ACCESSION   DATLQL010000320 DATLQL010000000
VERSION     DATLQL010000320.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1102)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1102)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1102
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_257468"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            27..632
                     /locus_tag="VNB68_03350"
     CDS             27..632
                     /locus_tag="VNB68_03350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36415.1"
                     /translation="MAFDIPNWVSTIIELGIGVAIAVLLYILQSRTGKLAEELLSKIS
                     SMTHRMDSLLEQRRLDELSKKMFECKRIIDHLEYIQKKEVELKEYLTDYISGDTTSEQ
                     LHYFVKQNFKPISNYRIREIEDATRQLGDKLSDNTLRLDLLSYIEAFLNLSETVVVDG
                     KPQNDNDLESFIISINTQLRRIEEFLTRFRKEIQQSNNSSK"
     gene            complement(731..>1102)
                     /locus_tag="VNB68_03355"
     CDS             complement(731..>1102)
                     /locus_tag="VNB68_03355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HVD36416.1"
                     /translation="EIYHIKNEGSRKRLVEAANNQPYVNAPVVLVFCMNPKRVKLNFT
                     PQTIRKFSQQDATLAAAYSQLAAHALGLSSIWIGMLDEKKIMEILGTDLSPSSILCLG
                     YPVKILLPKPKRNLKDLIHEI"
BASE COUNT          355 a          184 c          216 g          347 t
ORIGIN      
        1 tcataagttg acttcattga tctgatttgg cttttgatat accgaactgg gtctctacaa
       61 ttattgagtt aggtatagga gtcgcaattg cagttctgct gtatatactt cagtccagaa
      121 ctggaaaatt ggcagaagaa ctactttcga aaatttcatc catgacgcat aggatggatt
      181 cgctattaga acaaagaaga ttagacgaac tatccaagaa gatgtttgag tgtaagagga
      241 tcatagatca cctggagtac atacagaaaa aggaagtaga attaaaggaa tatttaaccg
      301 attatatctc gggtgataca acaagtgagc agttgcatta ttttgtgaag cagaatttta
      361 agcctatttc caattacagg attcgtgaga tagaagatgc gacaaggcag cttggagaca
      421 aattaagtga caatacccta agactggact tattgtcgta cattgaagca ttcctgaatc
      481 tcagtgaaac agtggtagtc gatggtaaac cgcaaaatga taacgacctt gaaagtttta
      541 tcatctctat taatactcaa ctacgaagaa ttgaagaatt cctgactaga tttcgtaaag
      601 agatacagca aagtaacaat agtagtaaat agcggtttat gtagtagatt tcaatattcg
      661 cttttagtaa agagcaattc tcttttcctt ctattccact agataggtaa gctttcttgt
      721 attaatggaa ttagatttca tgaattagat ccttaaggtt cctctttggc tttggtaaaa
      781 gaatctttac tggatatccc agacaaagaa tggaggatgg tgagagatct gtacctaata
      841 tttccattat cttcttttca tccaacatgc ctatccatat ggagctcaat cccaaagcat
      901 gcgcagctaa ttgagaatat gcagctgcga gagtcgcatc ttgttgagag aattttctga
      961 tcgtctgtgg agtaaaattt aattttactc tcttcggatt catgcaaaat acaagtacta
     1021 caggagcatt tacatatggt tgattgttag cagcttcaac aagccttttc ctagatcctt
     1081 cattctttat gtgatatatc tc
//
LOCUS       DATLQL010000321         1341 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_613534, whole genome shotgun sequence.
ACCESSION   DATLQL010000321 DATLQL010000000
VERSION     DATLQL010000321.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1341)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1341)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1341
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_613534"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(211..717)
                     /locus_tag="VNB68_03360"
     CDS             complement(211..717)
                     /locus_tag="VNB68_03360"
                     /inference="COORDINATES: protein motif:HMM:NF039195.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PsbP-related protein"
                     /protein_id="HVD36417.1"
                     /translation="MPKDSFLTYENSTYGIKIQYPPDWSFEEGVSTEKDTVIAIVYLY
                     PPIAADPNAVAYLYVGTWDLDRKTKSIDLLARHAINSWRPDQDFKLISATAQTNLAGR
                     PAYAIVFKHLNNGFDSKTTQLGTIFDNKVYYIVFSTEAVKYDAFLPTVQKMISSFELT
                     PMKREEIM"
     gene            1043..>1341
                     /locus_tag="VNB68_03365"
     CDS             1043..>1341
                     /locus_tag="VNB68_03365"
                     /inference="COORDINATES: protein motif:HMM:NF016724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HVD36418.1"
                     /translation="MIGYYNMLNSKPTATKSSSPTSSQPSLSSPPIIPAISLLKFPFK
                     LTKDQMEAVDSWTTNGFRGSIIYSTGTGKTEIAFECAKRACEAIVHNEGKNPADN"
BASE COUNT          403 a          248 c          264 g          426 t
ORIGIN      
        1 ttcaacgccc tgggcagata aagtaaatta ccaagcaggt tatcaacagg atgaaatgat
       61 gcacaaaaag gaatgaatgg tactttatgc taaaatttgt gtgcattaaa taacaattga
      121 tattgtaatg aactcaaaca atcacataag aatcaaattg tagatgaaac tagtagaggg
      181 tatggtcttc tgtatcgata ggtgttgatt ctacattatt tcttctcgtt tcatgggggt
      241 cagttcaaat gaactgatca ttttctgcac tgttggaaga aatgcatcgt attttacggc
      301 ctctgtactg aacacaatat agtaaacctt gttgtcgaat atcgttccca gttgtgttgt
      361 ttttgaatcg aagccgttgt tcaaatgttt gaatacaatt gcgtatgctg gtctacctgc
      421 aaggtttgtt tgtgctgttg cagagatcag tttgaaatct tgatcgggcc gccaggaatt
      481 aatcgcatgg cgtgctaata gatctatgct tttagttttg cgatcgagat cccatgtacc
      541 tacgtataaa taggctacag cgtttggatc tgcggcaatt ggaggatata agtaaactat
      601 agcgattacc gtatccttct ccgtgctcac tccctcttca aagctccagt cgggtggata
      661 ttgtatcttt attccataag tggaattctc ataggtcaaa aaactatcct ttggcataac
      721 agatatactt ataaaatcag tcagactctc tttttagagt tttcaatctt gaaagcatta
      781 ttcgagttag cttaattgaa gattgcactc cttatccaag ccacacgata atgtctgttg
      841 ggggtcgaag catactacac ttttctgcag gttttgttta ttaaattcag gaatttatct
      901 accgtttgta tgttaaaatg caagccttct gcttgtcatt catcagtttt agtgcttctg
      961 gcctcatgat agcggtttct ggcgtgcgtg aacacgaaaa tgccgtaata gataatattt
     1021 ttcaaccgga gatgtttatg ttgtgatagg atattataac atgttgaatt caaaacctac
     1081 cgcgacgaaa tcgtcatcac caacgtcttc acagccatcc ctatcatcac caccaataat
     1141 tccagcaatt tccttactaa aatttccatt taaacttaca aaggatcaga tggaggctgt
     1201 cgattcatgg acaacaaatg gctttagagg ttcgattata tacagtactg gcactggcaa
     1261 aacagaaata gcatttgaat gtgcaaaaag agcatgtgaa gcaatagtac ataacgaagg
     1321 caagaatccc gctgataata a
//
LOCUS       DATLQL010000322         1474 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1502483, whole genome shotgun sequence.
ACCESSION   DATLQL010000322 DATLQL010000000
VERSION     DATLQL010000322.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1474)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1474)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1474
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1502483"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1087)
                     /locus_tag="VNB68_03370"
     CDS             complement(<1..1087)
                     /locus_tag="VNB68_03370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin carboxylase N-terminal domain-containing
                     protein"
                     /protein_id="HVD36419.1"
                     /translation="MGKLISSVLIANRGEIALRVIRACKELEIKSIALYSDEDLRSKH
                     VKSADEAYYLGPPAPTKSYLNIDKIIEIAESAGAEAIHPGYGFLSENESFAAKCEEKG
                     IIFIGPTSDAMALTGDKMKCKEIMKKAQVPTIPGSDDILEEVDKAVEIAEEAGYPVLL
                     KSAFGGGGRGIRFADNEKKLREEWEMASAESRAAFGKSGLYVEKFLQGIRHIEFQLAR
                     DSSGNGRHLFERECSIQRRHQKLIEFSPSSVVDKKTRSKIGEIAVRAAESVDYLNAGT
                     AEFLRDEKGNFYFIEVNSRLQVEHPVTELVTGIDLVKLQIRIACGEDIPFKQSDLTFN
                     GSAIECRINAEDPLHDFVPSVGLVPDCN"
     gene            complement(1100..>1474)
                     /locus_tag="VNB68_03375"
     CDS             complement(1100..>1474)
                     /locus_tag="VNB68_03375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxyl transferase domain-containing protein"
                     /protein_id="HVD36420.1"
                     /translation="VPKVTCIIGKAYGGAYIAMGSKNLRADINYAWPTAEIAVLGPEA
                     AITIVHRKDLKNSKNPVEIKKKLAKEFREKFANPYIAAEKGIIDLVIDPIETRIMIAK
                     ALNVLQNKRESRPLRKHGNINL"
BASE COUNT          372 a          345 c          250 g          507 t
ORIGIN      
        1 gattacaatc cgggacaagt ccaaccgaag gaacaaagtc atgaagtggg tcttcggcat
       61 ttattctaca ttctattgct gaaccattaa aagtgagatc tgattgttta aaaggaatat
      121 cttctccaca cgcaattcta atctgcaatt tgacaagatc aatacccgta actaattctg
      181 tgaccgggtg ctctacctga agacgggagt taacctcgat aaaataaaag ttgccctttt
      241 catctcttag aaattcagca gttcctgcgt tgagataatc cacggactct gcggctctaa
      301 ctgctatttc ccctatcttt gatctggttt tcttgtcaac gactgaagat ggagaaaatt
      361 cgataagctt ttgatgacgc ctttgtatag agcattcccg ttcaaatagg tgtctaccgt
      421 ttccactgga atcccttgca agttggaact ctatgtgtct gattccttga agaaattttt
      481 caacatacag tccagattta ccaaatgcag ctctcgattc ggcggacgcc atttcccatt
      541 cttctctgag cttcttttcg ttgtctgcaa accgaattcc tcttccacca ccaccgaaag
      601 ctgatttaag tagtacagga tatccagctt cctcagcaat ttcgactgcc ttatctacct
      661 cttctaagat atcatcactt cctggtattg ttggcacttg agcctttttc attatttctt
      721 tacatttcat tttatcgccg gttaatgcca tggcatcact ggtcggacca ataaagatga
      781 tccccttttc ttcacatttt gctgcaaaag attcattttc agacaaaaat ccatagcccg
      841 gatggattgc ttcagcgcct gcactttcag caatttcaat gatcttgtct atgttaaggt
      901 agcttttggt tggtgctgga ggcccaagat agtaggcttc atcagcactc tttacatgct
      961 ttgatcttaa atcttcatca gaatacagtg caatagattt tatttccaat tccttgcatg
     1021 ccctaattac cctgagggct atctcgcctc tgtttgcaat taatacactt gatattaatt
     1081 tccccattct aaatctcctc taaagattaa tgttaccatg tttccttaat ggtcttgact
     1141 ctctcttgtt ctgcaataca tttagagcct ttgctatcat tattctagtt tcaataggat
     1201 caataacaag atcgattatt cccttctccg ctgcaatgta tggatttgca aatttctcgc
     1261 gaaattcttt tgctagtttt ttcttaattt ctaccggatt tttagaattc ttgagatctt
     1321 ttctgtgtac aatggttatg gcagcctccg gacccaatac tgcaatctct gctgtaggcc
     1381 atgcgtagtt tatgtctgct cttagattct tacttcccat cgcaatgtac gcgccaccat
     1441 aagcctttcc gataatgcat gttaccttag gaac
//
LOCUS       DATLQL010000323         1020 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1322838, whole genome shotgun sequence.
ACCESSION   DATLQL010000323 DATLQL010000000
VERSION     DATLQL010000323.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1020)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1020)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1020
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1322838"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..402)
                     /locus_tag="VNB68_03380"
     CDS             complement(<1..402)
                     /locus_tag="VNB68_03380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36421.1"
                     /translation="MSYKKDQKLDNSKFIDEQKALEEAETIAKLAPNEKTRDEAKDVV
                     EQLTESVEGKSTLLYQQEEELDKVLDETKKNIKKTTNEAKREVLCFAKTIGDLQEQTI
                     QTSTAIGYELVHLQKEAISTQSAYLPYIERSY"
     gene            complement(602..>1020)
                     /locus_tag="VNB68_03385"
     CDS             complement(602..>1020)
                     /locus_tag="VNB68_03385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36422.1"
                     /translation="FRRQVDKTARMIHSLLSKSGKNGLDFDSISEVVAVDNAVLLEAI
                     NRLEKLKRIEWIDDSTVVLVDNLKKISGKIYFVYIEKILQGEALVLVDGKWHARLSHY
                     DYDGPRNLLKKGSEFQAVGELYHNNGVLNLRIKQIV"
BASE COUNT          280 a          224 c          148 g          368 t
ORIGIN      
        1 ataagatcgt tcgatatagg gcaagtacgc cgattgggta gagattgctt ccttttgaag
       61 atgaactaat tcataaccta ttgctgtgct agtttggatg gtttgttcct gcaagtctcc
      121 gatagtcttt gcaaagcata aaacttccct ttttgcttca ttggttgttt tcttgatatt
      181 ctttttagtc tcatcaagta ccttatccag ctcttcttct tgttggtata gtagtgttga
      241 ttttccttct acagattccg ttaattgctc tactacatcc tttgcttcat ccctcgtttt
      301 ctcattcgga gctaactttg ctatcgtttc cgcttcttct aatgcctttt gctcatctat
      361 aaatttgcta ttatcaagtt tttgatcttt tttatacgac attaatacta atacagcatc
      421 atcatagata agacttcccc ctctacttta ctggtaataa gaaacgataa actcaatata
      481 tagcgattat tgacctgaat gagatggatt cttcaaagac aagtagctaa atttgcgtta
      541 tttacgtcat tgtccccatc actgtaaact aggagattta aaaacccgaa tccttccgat
      601 ttcaaactat ctgttttatc cttagattca agacaccatt gttatgatat aattctccga
      661 cagcttggaa ctcactgcct tttttgagga gatttctagg cccgtcataa tcataatgac
      721 tcaatcttgc atgccattta ccatcaacca acacaagagc ttctccttgt aagatctttt
      781 caatatacac gaaataaatc ttgccagaaa tcttcttcaa attatccaca agaactacgg
      841 tactatcatc aatccactct attcgcttca gcttctcaag tctattaatt gcttcaagta
      901 atactgcgtt atccacagcg acgacttcag agattgagtc gaaatccaga ccatttttac
      961 cacttttaga taacagagaa tgaatcatcc tagcagtctt gtcaacttgt cttctgaatt
//
LOCUS       DATLQL010000324         1144 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1129403, whole genome shotgun sequence.
ACCESSION   DATLQL010000324 DATLQL010000000
VERSION     DATLQL010000324.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1144)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1144)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1144
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1129403"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..215
                     /locus_tag="VNB68_03390"
     CDS             <1..215
                     /locus_tag="VNB68_03390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36423.1"
                     /translation="MHESMKILYIGSSQNLRQSLLDCLSDPCIGKTKRFSYAITENAD
                     KVKDQLLDEYRSKHNGRLPICMDGVH"
BASE COUNT          384 a          224 c          202 g          334 t
ORIGIN      
        1 agatgcatga aagcatgaag attctctaca taggaagtag tcaaaacctt agacaatctt
       61 tacttgattg tttgtcagat ccttgtatag gcaagaccaa aaggttcagt tatgctatta
      121 cagagaatgc agataaagtg aaggatcaac tccttgatga ataccgtagc aaacacaatg
      181 gcaggttacc tatatgtatg gatggagtgc actgattgaa ccagccagcc tatcatccca
      241 actctcacca accatttaat tatagaggtt ctaaaagact caaaatagtc aacccttaat
      301 ccttcttggt cattctcttt taatcacttc tgtctggagg catagtatac tgtgaataga
      361 tcattcttat ccgagtcata gccaatctta ctaatagtgt gaagtcgggg taagtaattc
      421 ttcctctagg caatccaata gttatagtca gattaaaaat taaacttgct tggcagcact
      481 atacaatacc tgtttatctt atataataat actgataata cattattatt taaaaatgtg
      541 aaatcttcat cgcaacctct actggcgttt aaacccgcat tcaatacggc cgtcccttac
      601 aaagaagaat aaggagttgg ttcgcaattt tgcagaagat ctctaacaga catgacctgg
      661 cggctgttga caagtatatg gcaggcgcag aaggcttcaa acagtaccta gacgaataca
      721 ttgcaggacc cagattcgca aactagaaca ccaaattgtt gctaaaggta ataaggtatt
      781 tgtattgttc attaccacag caacgaataa gcgcacaggt aaaagagtta ccataaaatc
      841 tgcggacgta tatagaattg ttaatggtat gcttgtagcg cattgggatg tagtagaaac
      901 ttcagaattc cccaatagaa aaatttctga actataaaca caattgttag tagaagtcag
      961 acatacatcg tggtttgaag atttagcata caatttcttt gctaacaact acacctgaat
     1021 ttgtctactt caaggtcatg aataccttca gccaacatga atcaaaatct acataataag
     1081 atacagtgaa ttcctctacc ctttgacctt tttctggata gaccttacgc ttaggacata
     1141 cctt
//
LOCUS       DATLQL010000325         1044 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_258535, whole genome shotgun sequence.
ACCESSION   DATLQL010000325 DATLQL010000000
VERSION     DATLQL010000325.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1044)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1044)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1044
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_258535"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            179..826
                     /locus_tag="VNB68_03395"
     CDS             179..826
                     /locus_tag="VNB68_03395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4443 domain-containing protein"
                     /protein_id="HVD36424.1"
                     /translation="MHTYVKTLQNVANYTANRMQSFVSFDMVHVFKTLQLIEVYGHVS
                     REMLCDELELGEGATRTLMKHLKMQNLIESTNAGTKMSKKGNALFNEFLSSIPYELSL
                     SKCSITLGKHNYAVLVKQMGSTVKSGIEQRDAAIKMGASGATTLLFMDNKFFIPLTGF
                     DALQNEFRLSKQLIETLHPEDGDVIIIGTDDHSEKKAEFAAKSAALMTIMNHEKH"
BASE COUNT          357 a          183 c          199 g          305 t
ORIGIN      
        1 ccaacggcta tgcgcggaac acgtggaact tctttggcta tctggctgat cgtagacatc
       61 ttaccctgta gtaattattc tagtatataa attaagggat ggtttatcca accaagctag
      121 agtatgttca ttaaaaagcc aagtaaatat aaactcgtac gaattacaaa aatcattaat
      181 gcatacttat gttaaaactc ttcaaaatgt tgcaaactac actgcaaata ggatgcaatc
      241 atttgtatcg tttgacatgg tacatgtgtt caaaacgtta cagctaatcg aagtgtacgg
      301 gcatgttagt agagagatgc tctgtgatga attggaactt ggtgagggag caacaagaac
      361 actgatgaaa catctaaaga tgcaaaacct catagaatcc acaaatgcag gaacgaagat
      421 gagtaaaaag ggaaatgcat tgtttaatga gttcctatct tcgataccat atgaattaag
      481 cttatcaaaa tgtagcataa ctcttggaaa gcacaattac gcagtactgg taaaacagat
      541 gggttctacc gtaaagtcag gaatcgaaca aagagatgcc gcaattaaaa tgggtgcatc
      601 tggtgcaact actcttttgt tcatggacaa taagttcttc attccgctta ctggctttga
      661 tgcactacag aatgaatttc ggttgtccaa acaattgata gagacgctac atcctgaaga
      721 tggagatgta attataatag gaactgatga ccactctgag aagaaagccg aatttgcagc
      781 aaaaagtgca gctctaatga ctataatgaa tcatgaaaag cactaattta aatttctctg
      841 atattatcaa atcgaatgat gtgaagaaaa actcaactct cgactagtta tttcaaaatt
      901 gcaaagtgat ctttatctgt gccatctcta ttttcgtaaa atgttccctt cataacttta
      961 ccatcacttg ttatgttgac atccaagaag ccaaaccttt ggaattgttt gactacgtat
     1021 ggtgcttgtt ccgtaaagtt atgt
//
LOCUS       DATLQL010000326         1276 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2211912, whole genome shotgun sequence.
ACCESSION   DATLQL010000326 DATLQL010000000
VERSION     DATLQL010000326.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1276)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1276)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1276
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2211912"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..458)
                     /locus_tag="VNB68_03400"
     CDS             complement(<1..458)
                     /locus_tag="VNB68_03400"
                     /inference="COORDINATES: protein motif:HMM:NF013209.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HVD36425.1"
                     /translation="MDNDSIRGRNTTESVDIKTLILWYIDKAPGIRYRELLRLSGLTN
                     GAVEYHLKILESTHKVTVDRQDGKRARYYPIYIRSDESHILGHMRNQAAREIVIFVLE
                     HDLCTFSEILEHMKKAPSTVSWHLKRLSDAGIVLVTFGQNFHLYRVTNSK"
     gene            complement(464..952)
                     /locus_tag="VNB68_03405"
     CDS             complement(464..952)
                     /locus_tag="VNB68_03405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36426.1"
                     /translation="MANQTTHLLVRKLLPIYLTLEYILYKFCYFAKNHIQDILASKPK
                     LFLTVSLSTFAVFTPLIIVPHLNRPVLIYFISMHVASIVISVFLIVVSILAYKRTRSK
                     KVLYTTVGFLSLLVVELLFLLQAMPGTSRVMHRGIYLGLPHILLLLMLTLFGVGVLKV
                     EK"
BASE COUNT          407 a          229 c          235 g          405 t
ORIGIN      
        1 aacttgctgt ttgtgactct ataaagatga aagttctgcc caaaagtaac taatactatg
       61 cctgcgtcag ataatctctt taggtgccaa gatacagtag aaggagcctt cttcatatgc
      121 tccaagatct cactaaacgt acaaagatca tgttcaagta caaatatgac tatttctcgt
      181 gcagcttggt ttctcatatg tcctagaata tgtgattcat ctgacctaat gtagattgga
      241 tagtatcttg ctctcttccc atcttgtcta tcgactgtta ctttgtgtgt actttctagt
      301 atcttcagat ggtattctac tgcaccgttt gttaaaccac tcaaccttag gagctctctg
      361 tagcgaattc caggagcctt gtcgatatac catagaatta gtgttttgat atcaactgat
      421 tctgttgtat tacgaccacg tatagaatca ttatccattt cgactatttt tccaccttca
      481 acactccaac tccaaagaga gttagcataa gcaacaagag aatatgtggt agtcctagat
      541 atatcccacg atgcattact ctactagtac ctggcatggc ttgaagcaaa aacaataatt
      601 caactactaa aagtgaaagg aaacctactg ttgtatataa tacttttttg cttcttgttc
      661 ttttatatgc aagtatcgat acaacgataa gaaacacgga tattacaata ctagctacat
      721 gcattgagat aaaataaatt aagactggac gattgaggtg tggaacaata atcaatggag
      781 tgaaaacagc aaatgtggat agggataccg taaggaacag cttgggttta ctggccaaaa
      841 tgtcttgaat atgatttttt gcgaagtagc aaaatttata caagatatat tccaacgtca
      901 agtaaatcgg aagcaatttc cttacgagta gatgcgtagt ttgattagcc actcagatta
      961 gtatagaacc aggattgtaa ttacctttgc agtacatttc gctataagaa tttatcagtc
     1021 cgtatcattt aaaatcaatt ctgagagaca gaaagagttg ttaccccaga aaatcgtttt
     1081 cttgcgtgct tggattcgta gatctttgat tatagctagt tctgcccaac tgtttaagat
     1141 tgcgaacggt tagagaagag ttttagattc ccagagagaa gtattttaca cgcaatttat
     1201 tcagccttct ctagggtttg gttcgatatc agaagtgcaa attggttaag aaatagaaat
     1261 aagcaaataa atcgaa
//
LOCUS       DATLQL010000327         2231 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1855353, whole genome shotgun sequence.
ACCESSION   DATLQL010000327 DATLQL010000000
VERSION     DATLQL010000327.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2231)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2231)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2231
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1855353"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(265..1044)
                     /gene="sufC"
                     /locus_tag="VNB68_03410"
     CDS             complement(265..1044)
                     /gene="sufC"
                     /locus_tag="VNB68_03410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly ATPase SufC"
                     /protein_id="HVD36427.1"
                     /translation="MPFLEIHGLSANIDGKEILNNLELNVDRGEVHAIMGPNGSGKST
                     LANVIMGHPKYTVTSGNVLVSGQDILDLSTDERAKKGIFLGFQYPTEISGVGYSHFLR
                     NAYNILNKSLGSQQKDREVFLTVREFHEYLKKNLGDVGLDPAFLGRYLNEGFSGGEKK
                     RSEVMQMLVLKPMIAILDEPDSGLDIDAVKAVAEAINQLINTGAGIVVITHYARILRY
                     LAKLDNIHVMAKGRILKSGGRELAEELEEKGYGWLGLEDAD"
     gene            1496..1837
                     /locus_tag="VNB68_03415"
     CDS             1496..1837
                     /locus_tag="VNB68_03415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36428.1"
                     /translation="MDLDQKRLFIIPIPDINIHSLWTAQISNSVPKFESVFTNDEFTN
                     MLFKEKGVKVIGPPLHRRHELSGTAIRNRIVNDLEWLNLVSPQTAVVIEDIAGVQRIK
                     KLSLLDPHSDG"
     gene            2008..>2231
                     /locus_tag="VNB68_03420"
     CDS             2008..>2231
                     /locus_tag="VNB68_03420"
                     /inference="COORDINATES: protein motif:HMM:TIGR00451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PUA domain-containing protein"
                     /protein_id="HVD36429.1"
                     /translation="MNAIETEKNGRLLVGEGITLVQTKDNLIVPHLVEKDLLSHFPHV
                     IVDMGAVGFICNGANVMRPGITHTDGFGES"
BASE COUNT          668 a          440 c          419 g          704 t
ORIGIN      
        1 ttcgctgcgg gtcttataga tttgacactt ttctctatag cagtggtcat aggattcata
       61 actacgataa tggcacctgt gttctccagg ccgtacgtca caaaggtaag atctaaggtt
      121 gtgaccaaat gacacactgt aaaaatgacg tacgcaaccg taaatctttt ctgcggtaaa
      181 tctgctattg cagtaacgtt tcctattatt gtctagatag atgcaaatca ggtgataact
      241 cttgtactgt atccgtgctt agccttaatc cgcatcctcg agacccagcc aaccgtaacc
      301 cttttcttcg agttcttctg caagctctct cccgccagat ttcaatattc ggcctttagc
      361 cataacatgt atattgtcaa gcttggctaa atagcgcaaa attctggcgt aatgggttat
      421 tacaacaatg cctgctcctg tatttatcaa ctgatttatt gcttccgcca cagcttttac
      481 tgcatctatg tctaaacctg aatcaggttc atccaaaatg gctatcatgg gtttcaaaac
      541 caacatttgc atgacttctg atcgcttctt ctccccacca gaaaagcctt cgttcaaata
      601 cctcccaaga aatgcaggat ccaatcctac atcacccaaa tttttcttca agtattcgtg
      661 aaattcccta actgttaaga atacctctct atctttctgt tgtgaaccaa ggcttttatt
      721 taatatgttg tatgcgtttc ttaagaaatg actataccct acgccagaaa tttctgtagg
      781 atattggaag cccaagaaga tacccttctt tgccctttca tcagtactta aatcgagaat
      841 atcctgtcca gaaaccaata catttccaga tgttacggtg tattttggat gtcccattat
      901 cacatttgcc agcgtgcttt tgccagatcc gttaggcccc ataatagcat ggacctctcc
      961 cctgtccaca tttaattcga ggttatttag aatctcctta ccatcgatgt tagcagataa
     1021 accatgaatt tctaaaaaag gcataaatcg tatttgagaa taacataata taaagtacta
     1081 cggagttgca attaccagta gaatttcaag atttgacgat tacctttgaa attattaatc
     1141 atgaatgttt cttcgattag gcacatttga cattggattg ttcgtgcaat acgttaaagg
     1201 tgctgcaaga tgagctgtta ttcgctttct tacaaatttt taaactttgg aaataggaac
     1261 ataaaatgct ttaaattgtc gttaaaatca tttgaaaaga gtgttgtcaa ggggcctttt
     1321 tattggtaga tttcagccat ttcatttggg acataaggca tctattgatt ttgctttaag
     1381 ccaagtcgaa agtcttgtaa ttgtaatcgg gagttctcaa aagagctatg aagcccgaaa
     1441 cccatttact tctggtgaaa gaattctcat gagaaagtaa tatctaaatg cagatgtgga
     1501 cctagatcaa aagagattat ttattattcc tataccggac ataaatatcc attctctgtg
     1561 gacagcacaa ataagcaatt ctgttccaaa gtttgagtct gtatttacaa atgatgaatt
     1621 cactaatatg cttttcaagg aaaagggagt taaagtgata ggacctcccc ttcatcgtcg
     1681 tcatgaactt tcggggacgg caataaggaa tagaatagtg aatgatttag aatggctaaa
     1741 tctcgtttct cctcagactg ctgtagtaat tgaagatatt gctggtgtac agcgcataaa
     1801 aaaactctca ttacttgacc cgcactccga tggataatat ttctaccctc atcctgagat
     1861 gccaagtaca aacgagatgg ataataacga gcaagattat gataatggtc attgaaggca
     1921 catacactat caaaaagaga aatccgtgac attgctggac gtattagtaa gaattggcca
     1981 aaatcaatta tttgtaatat aaagagcttg aatgcaatcg aaactgaaaa gaatggtagg
     2041 cttctggttg gcgaaggaat tacccttgtt cagacgaagg ataatttgat agttcctcat
     2101 ttggttgaaa aggatctctt aagtcatttt cctcatgtta ttgttgacat gggggcagtg
     2161 gggtttattt gcaatggtgc taacgttatg cggcctggga ttacacatac cgatggcttt
     2221 ggtgagtcag a
//
LOCUS       DATLQL010000328         1420 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2037079, whole genome shotgun sequence.
ACCESSION   DATLQL010000328 DATLQL010000000
VERSION     DATLQL010000328.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1420)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1420)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1420
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2037079"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            67..1146
                     /gene="trpD"
                     /locus_tag="VNB68_03425"
     CDS             67..1146
                     /gene="trpD"
                     /locus_tag="VNB68_03425"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: protein motif:HMM:TIGR01245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004048 - anthranilate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HVD36430.1"
                     /translation="MSTEDVVRSVTRKLVYKIDLKDEDFYNAVKSVFSVDMPDAVVAS
                     FLTAVTAAGTTKREIKIIRDVLKQESVSVFTDTSTSLIDNCGTGGDLIDTFNISTAAA
                     IVAASAECKVAKHGNRSASGLCGSADFFERIGFNLDSSVENVLWCLRKTGISFFYAPK
                     LHPALRRISSIRKQIGFKTVLNFVGPLCNPCTDITGQVIGVSDLGLLGPISEVMFDSE
                     INHIILVHSDDGLDELSNTSESTVIDIKKSGCRQYRFSPKSVNIHLATLRDIQASSME
                     DSVKYTMQVIYGVASSAKEDIVILNSSLALMVGDKVDTIEEGIEMARSAVRSGAPKAK
                     LRELVDLCGNKDKLEQLEKVYNLND"
BASE COUNT          452 a          243 c          297 g          428 t
ORIGIN      
        1 ctgttcttac aaaggatgga tcgaaaattc ttctcaattt tattagtctt ctaaaaaggt
       61 aagtgaatgt caaccgaaga tgttgtaaga agcgtgacga ggaaacttgt ctacaaaatc
      121 gacttgaaag atgaagattt ctataacgca gtcaaatcgg tcttttcggt tgatatgcct
      181 gacgcagtag ttgcctcttt tttgaccgcc gtaactgcag ccggaaccac gaagagggaa
      241 ataaagatca ttagagacgt actaaaacaa gaatctgttt ctgtgttcac cgatacatca
      301 acttctctta ttgataattg tggaacgggt ggcgatttga ttgatacgtt taacataagt
      361 acggcagctg ctatagtggc tgcttctgca gaatgtaaag ttgcaaagca cgggaatagg
      421 tctgcaagcg gcctgtgtgg aagtgctgat ttttttgaaa gaattggttt caacttggac
      481 tcgtctgtgg agaatgtttt atggtgtctg agaaaaaccg gcatctcatt cttttatgct
      541 ccaaaattac atcccgcgct gaggagaata tcctcaatta ggaaacagat aggttttaaa
      601 acagtgctca acttcgtagg tccgctttgc aatccatgca ctgatataac tggacaggta
      661 attggggtat ctgacctcgg actactcgga ccaatatctg aggtaatgtt tgattcagag
      721 attaaccaca ttatattagt tcattctgac gacgggctcg atgaactatc aaatacgtct
      781 gaaagtacag taattgatat taaaaaatct ggatgcagac aatatcgttt tagtccaaaa
      841 tcagttaaca tacatttagc aacgctaagg gacattcaag catcatcaat ggaggattcc
      901 gttaaataca caatgcaagt catttacggt gttgccagca gtgcaaagga agatattgta
      961 atactaaatt cgtctctggc tcttatggtt ggagacaaag tcgataccat tgaagaagga
     1021 attgaaatgg cgagaagtgc tgttagatcc ggtgccccta aagcaaagtt aagggaattg
     1081 gttgatctct gtggcaacaa agacaaacta gaacaattgg agaaagttta taatctgaat
     1141 gattgaagac ttgtcacaaa aattctttga ttgattagac ttactttatc tgatgaaatt
     1201 ctaagtaaat ttagtcgatg tcaatcagga cacgataata aattaaaaca cagatatgtc
     1261 acaaactaaa attcaaacga gtcttccttc taattgcttc caaaataaaa aaatggtatt
     1321 tgacggaact ttttgtatgt ggttagatga ataagaaatt cttgctttcc ctagactacc
     1381 ttctctttcc tttagatgat ttggatttcg caggtttctt
//
LOCUS       DATLQL010000329         1063 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_259690, whole genome shotgun sequence.
ACCESSION   DATLQL010000329 DATLQL010000000
VERSION     DATLQL010000329.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1063)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1063)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1063
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_259690"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            22..>1063
                     /locus_tag="VNB68_03430"
     CDS             22..>1063
                     /locus_tag="VNB68_03430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004748 - ribonucleoside-diphosphate
                     reductase activity, thioredoxin disulfide as acceptor
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide reductase N-terminal alpha
                     domain-containing protein"
                     /protein_id="HVD36431.1"
                     /translation="MAETTEFNNSRENLITRIRKRDGRVVDFGKSKISNAIYKALVAT
                     GKPDYRLTETLSDKVMQKMVQHGYASTEVSAIPSVEDVQDIVESILIEEGLSDTAKSY
                     ILYRHERRKIRDEKMKILNKKDLDEVDKAFDVNSLRVLAARYLLRDNNNEVVEGPKQM
                     FERVAILVAIPDILHDSRLFDLVGRHTRDIEEAERYYSKIVDFDLKLKIGIFYLNKYH
                     FESLIRHYVYLAKQGYMKLSFKEILKLIVEGKLAQYEERIREYYELMISSDFLPNTPT
                     LMNAGARLGQLSACFVLDMQDDMYKIMKSSTDAAMIFKSGGGVGINYSDLRPEGDIVA
                     STSGVASGPSSFM"
BASE COUNT          363 a          177 c          232 g          291 t
ORIGIN      
        1 tacattcttc ataatgacgg gatggcagaa actacagagt ttaataattc aagagagaat
       61 ttgataacac gaataagaaa acgagatgga agagttgttg attttgggaa gtcaaagatt
      121 tccaacgcga tatataaggc attagttgca acggggaagc ccgattaccg attgacagag
      181 actttatctg acaaagtaat gcaaaagatg gtccaacatg ggtacgcttc aactgaagta
      241 tctgcaattc caagtgttga ggatgtgcaa gatatagtag aatctatact tattgaagaa
      301 ggcttgtctg ataccgcaaa atcatacatt ctgtacagac atgaaagacg caagattcga
      361 gacgagaaaa tgaagattct aaataaaaaa gacctcgatg aagtggataa ggcgtttgat
      421 gttaattctc ttcgagtcct ggcagcacgc tatctcctta gagataacaa taatgaggtt
      481 gtcgaaggac caaagcaaat gtttgaacga gtggctattc tggtagcaat accagatatt
      541 ttgcatgatt cacgattgtt tgacttagta ggaaggcaca cccgagatat tgaagaagct
      601 gagagatatt attccaaaat agtcgatttt gatttgaagc taaaaattgg tatcttctac
      661 ttaaacaaat atcatttcga atccctgatc cgacattacg tatatctggc aaagcaaggg
      721 tatatgaaac taagctttaa ggaaatacta aaattaattg ttgaggggaa actagcacag
      781 tatgaagaaa ggattagaga atattatgaa ctaatgatat caagcgattt ccttccaaac
      841 acacctactc tgatgaatgc gggagcaaga ctcggtcagt tgtctgcctg tttcgtcctt
      901 gatatgcagg atgatatgta caaaattatg aaatcatcaa ctgatgcggc catgatcttc
      961 aaatctggcg gtggagtagg aataaactat tctgacctaa gacctgaagg cgatattgtt
     1021 gcttccacct caggtgtcgc atcaggtccg tcatcattta tga
//
LOCUS       DATLQL010000330         1568 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_259941, whole genome shotgun sequence.
ACCESSION   DATLQL010000330 DATLQL010000000
VERSION     DATLQL010000330.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1568)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1568)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1568
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_259941"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..531
                     /locus_tag="VNB68_03435"
     CDS             <1..531
                     /locus_tag="VNB68_03435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36432.1"
                     /translation="SGRALAIDPFSSDNALIIHYLLTKNDILKIAGMKEVVDDSNNTM
                     KFTLMPISHASKQSSSDITTDFGAIHISLNWSPNPPRPGSESNLTLKFSDAQKDSSLN
                     ADVNYGLVIRSSDGKEIIRKDNLFALNGTGTVSLTIPVSGVYQIEVDVKSLKFSGQTI
                     PDQTRKGLARGFIVIP"
     gene            complement(709..1431)
                     /locus_tag="VNB68_03440"
     CDS             complement(709..1431)
                     /locus_tag="VNB68_03440"
                     /inference="COORDINATES: protein motif:HMM:NF021287.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAC2 family protein"
                     /protein_id="HVD36433.1"
                     /translation="MLKLNIVKEVHSEPFVVFASLPDMGRVGGLTSTFLASQFDAELV
                     ASITSVEKPWVSVKDGLVANVIDTYNIYYSDIQKLLIFSGNNQPEDPRELFGLCTTFL
                     DYCMSIGGITRLYTAGGSFNEQLTEEPRVVAVATTASLRDLLLKFRINVIGNEISTIT
                     WFNGLILGMAAQRNIEAIGFYGEISNKTIPQPLAAKSIVKVFGRIEGMNIDIKPFDRQ
                     YEEVLDNLEKRKGINESRPGIG"
BASE COUNT          465 a          333 c          281 g          489 t
ORIGIN      
        1 agcgggaggg cccttgctat agatccattt tcttcagata atgcattaat aatacattat
       61 cttttgacca aaaacgacat actcaagatt gctggaatga aggaagttgt ggacgatagt
      121 aataatacaa tgaaatttac actcatgcct atatctcatg cctccaagca atcttcttca
      181 gacataacta ccgactttgg agcgattcat atatccctca actggtcacc aaacccacca
      241 agaccaggtt cagagagtaa tttaactctg aaatttagtg atgcgcaaaa ggattcttcg
      301 ttaaatgctg atgttaatta tggattggta attcgttcaa gcgatggaaa ggagattatt
      361 cgcaaggata atctctttgc attgaatggc acaggcactg tgagtttgac catccctgtc
      421 agcggcgtct atcaaatcga agttgatgtc aaatctctca aattctcagg tcagacaata
      481 ccggatcaaa caagaaaggg tttggctaga ggatttatcg taatacccta attgggaact
      541 catcgagacg tttcaaggtt gtggttattc gccctctttt tgtttaagaa gcctcctaat
      601 tttcttcaag atcgttgaga ctcttttgta tgtccaatta tggccaaaca tatttttcga
      661 gagataaaca ctggctcaaa ctttcaaaac cgctgattta atttcgccct atcctatccc
      721 tggtctagat tcgttaatcc cctttcgttt ttccaagtta tctaatactt cttcgtactg
      781 tcggtcgaac ggcttgatat ctatattcat accttcaatt cttccaaaaa ctttcacaat
      841 gctttttgct gcaaggggtt gtggtattgt cttgtttgat atctcaccat aaaatcctat
      901 tgcctcgata tttctttggg cagccattcc caaaataaga ccgttgaacc atgtaattgt
      961 tgaaatttca ttaccaataa catttattct gaatttcaat agcaaatctc ttagcgaagc
     1021 agtagtcgca accgcaacaa ctcttggttc ctcggttagc tgttcattaa acgaaccgcc
     1081 ggcagtatac aatcgagtaa tcccgccgat agacatacaa tagtcaagaa aagtggtgca
     1141 caatccaaag agctcccttg gatcttctgg ttggttgtta ccagaaaata ttaacaattt
     1201 ttgaatatca ctgtagtaaa tgttgtacgt atcaatcaca ttagcaacta gaccgtcctt
     1261 tacactcacc cagggttttt cgactgaggt aatactagct accaactcag catcaaattg
     1321 actagctaag aatgtagaag ttaatccacc tacccttccc atgtcgggaa gtgaggcaaa
     1381 aacaacgaaa ggttctgagt ggacctcctt aactatgttt agctttagca tgccttatca
     1441 atatcataga gtatactctc aaatggtgtt aaaatgttta ctcgtcaaac gcatcgtgga
     1501 tccgattcat ttttcggcca gttcgcaatt ctatagagtg acagaacatt gaatttgaat
     1561 cctaatgt
//
LOCUS       DATLQL010000331         1008 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_260163, whole genome shotgun sequence.
ACCESSION   DATLQL010000331 DATLQL010000000
VERSION     DATLQL010000331.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1008)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1008)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1008
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_260163"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            140..598
                     /locus_tag="VNB68_03445"
     CDS             140..598
                     /locus_tag="VNB68_03445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36434.1"
                     /translation="MVKTESTSSKSGDNEGTLPTWAEEEIKSVQFGQPEILTRTGYIL
                     DIYEKEFKIDIQLYEALPDSRTIIEGLDVPRSMKIADFMKGFVYEFKIKMFKAPLSTT
                     LVQLLKKNFELEMDAIYRFELQEMQMMDVESDVAATTSTTLGEGDDNGEF"
     gene            complement(628..>1008)
                     /locus_tag="VNB68_03450"
     CDS             complement(628..>1008)
                     /locus_tag="VNB68_03450"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HVD36435.1"
                     /translation="NVASVAASFGVPGLAAYCGSKFATLGFSEALHHELYGSGVGITV
                     VSPIAVKTNFFRNQSFGGKMPNYTRLSLEPKTVSRAIMAAANSSRLEIIVPFFVRGGV
                     WLKHTLPYFVNAIAGPVFRRQYTN"
BASE COUNT          335 a          192 c          197 g          284 t
ORIGIN      
        1 tcataaacgt tattttgaca actagctttt acacttttta tctcacattt attagcaaat
       61 tagggtcagg caaaccatac ccttaaaata gactaatata caacgttttt tatccaataa
      121 agattggtat agcaataata tggtaaaaac agagagcacg tcaagcaaaa gcggtgacaa
      181 tgaaggaact ctccctacat gggctgaaga agaaatcaag tctgttcaat ttggacagcc
      241 tgagatcctt acaagaactg ggtatatcct tgatatctac gaaaaggagt ttaaaataga
      301 catacaactc tatgaagcct taccagattc caggaccata attgaaggtc tggacgttcc
      361 caggtctatg aagatagcag attttatgaa aggatttgtc tatgaattta aaataaagat
      421 gttcaaagct ccgctaagca caacgcttgt tcaattattg aagaaaaact ttgaacttga
      481 aatggatgca atttatcgat tcgaactgca agaaatgcag atgatggacg tcgagtctga
      541 cgtagctgca accacatcaa caactttagg agagggtgat gataatggcg aattctagat
      601 taaacgttgt aggcagtaag ggtaaattta atttgtatat tgccttctaa agactggtcc
      661 agcaattgcg ttaacaaaat acggcagggt gtgcttcaac caaactcctc ctctcacaaa
      721 aaaggggaca ataatttcta gtctagaaga gtttgctgca gccatgattg cccgtgatac
      781 cgtttttggc tctagggaga gtcttgtata atttggcatt ttacctccaa aagattgatt
      841 tctaaagaaa ttagtcttaa ctgctatagg acttactact gttataccta ctccacttcc
      901 atacagctca tggtgtaatg cttcagaaaa acctagcgtt gcaaactttg agccgcaata
      961 cgctgccagt cctggtactc caaagctggc agcaactgaa gcaacgtt
//
LOCUS       DATLQL010000332         1183 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2213739, whole genome shotgun sequence.
ACCESSION   DATLQL010000332 DATLQL010000000
VERSION     DATLQL010000332.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1183)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1183)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1183
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2213739"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..212
                     /locus_tag="VNB68_03455"
     CDS             <1..212
                     /locus_tag="VNB68_03455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36436.1"
                     /translation="KKGAYGARCGLIQVIKEIIVALIKRRSIKKKTNKVKCSNCVISC
                     GSIENTFRRVAGMMRNSRKFSFHDN"
     gene            complement(432..926)
                     /locus_tag="VNB68_03460"
     CDS             complement(432..926)
                     /locus_tag="VNB68_03460"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HVD36437.1"
                     /translation="MTFSQNRSGKRHTESKAEMTIIMLPSDANPKGNVFGGVILKYVD
                     LIAGLVAKRHSRHANVVTASIDRMTFLKPVFIGNALILSARLNYIRRSSMEVEVNVES
                     EDLDDNTRVHAGTAFVTMVALDKYGKATEVSPLLLENDEDNRRFHEGESRMLSRLKEA
                     GKIS"
BASE COUNT          365 a          222 c          225 g          371 t
ORIGIN      
        1 acaaaaaggg ggcatatgga gctagatgtg gtctgataca ggtgataaaa gaaataatcg
       61 tagcattaat taaaaggaga tctattaaga agaagaccaa taaggtcaag tgcagcaact
      121 gtgtgatatc ctgtggctct atagaaaata cgtttaggcg tgttgcaggc atgatgagga
      181 atagcagaaa attttctttt catgataatt aaggattggt agtctcattc agttttttta
      241 cgtatatcat tagaggcaga gccactctgg gatcctagtt tacttcttct aacttagttc
      301 tggatagatt tcacatcgaa atatacccat tcggccaaat tacatagtta gtcttgaaag
      361 tttgagtggg gttcaagtca aatatacctt ctaaattgca catatttatt aacatcatcc
      421 ggccttttct attaacttat tttgccagct tcttttaatc tcgataacat tcttgattca
      481 ccttcgtgaa aacgcctgtt gtcctcgtca ttttctaaga gtaatggaga aacctctgta
      541 gcctttccat atttgtcaag agcaaccatg gtcacaaaag cggttccggc atgcactcga
      601 gtgttgtcgt caagatcttc agattcgaca ttgacttcga cctccataga agatcgtcga
      661 atatagttca gccgagcaga aagtatcaaa gcattgccta taaacacagg ttttaaaaat
      721 gtcattcgat cgatgctggc cgtcacaacg tttgcatgtc tggaatgtcg ttttgcgaca
      781 agacctgcga tcaaatctac gtactttaat attacgccac cgaaaacgtt acctttcgga
      841 ttagcatctg aaggcaacat gataatagtc atctctgctt tggactcagt atggcgtttt
      901 ccacttctgt tctgcgaaaa agtcatagag tgatatcaac cagcatacta aagaatacgg
      961 catattaata ctatttccac tctcgatatc gggtcattaa aatattgata agcagggaca
     1021 taaaaaaatg ataatgctca gtcatagtaa ttatagaagc aattaggttg gatatcttta
     1081 attgaagtca caaattaaac atatgattgg taagtatttt gaagttccct gtaatctaag
     1141 cttagtggtt tatcacattc cttagtgccc actgcacacc ttt
//
LOCUS       DATLQL010000333         2263 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2394160, whole genome shotgun sequence.
ACCESSION   DATLQL010000333 DATLQL010000000
VERSION     DATLQL010000333.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2263)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2263)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2263
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2394160"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            251..1315
                     /locus_tag="VNB68_03465"
     CDS             251..1315
                     /locus_tag="VNB68_03465"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HVD36438.1"
                     /translation="MSATSVTFSECGITVYSNGRKILLDPNRGIDCDLVFVSHAHTDH
                     LIRSCKKILSSRKTKTLTSRETSMIAHARGFRIDDVTQEYDGFQLVNTGHILGSKGLL
                     IGDDLYYTGDISVRERAFMKPAFIPKADTLIIESTFGRPEYVFPDLREVIDRTNRIIS
                     EMYSRGVPVILLGYPLGKAQLLTELFSHWDPLYVDDSIYRMNCLYKDLGVSLKESMQV
                     SLAEKTGLLMRQKPWLMISPLGRSKTTWLLDIKEKYGAITIGFSGWAVNHRYRCFMGT
                     DYAMPISDHCDFQELIDVVKLCNAKKIYTSHGYSSDFAQSLRKMGFDAEPIQQKRKRQ
                     VKKDRSSRFPDYSLDDYINK"
     gene            complement(1319..>2263)
                     /locus_tag="VNB68_03470"
     CDS             complement(1319..>2263)
                     /locus_tag="VNB68_03470"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HVD36439.1"
                     /translation="PQWKNAVVNDAWLMLAAIGAITRNVELGTCVTDAIRRHPSSIAL
                     SAITLDRITNGRAILGIGAGEAQNVVDFGIEFNKPVSKFKEQLEVIESLFESDPDHHV
                     NYNGQYYKLNNACLQAKSIRSPRPPIFIAAGAPKTLELCAKYGDGWIPIGYTPELFRH
                     HVDVITENAKKIGRNISHFEFANDVDVYFTDDGEEAWNKMKNAVKVSLYKPELLQVHN
                     IQQDTEFDFRRYFTEYAMNKPELMEQMKKAALKIPDSIARTAIGVGKADDVIQMLERF
                     IKAGTNHFIIRFWGEGYFKNIELFGNKVIPYFRDGLGK"
BASE COUNT          637 a          461 c          449 g          716 t
ORIGIN      
        1 tgctatggca cctaaaatgg cctccatatt actgcctctc cccgaaatta agatcgcaag
       61 gtttgtcaat agtaatctag attagacgtt tctattctta agtatattct acgtttttag
      121 atccaacttt cgtagttatc agattgcata ttaaccatta tctgtgctga cgattagcct
      181 ctcccgatat tcgttgtttt gtgttaatat taaaatacga gtcttatcac aaagtctagt
      241 tacgaaggaa ttgtctgcaa cctctgtaac tttttcagaa tgtggaatta cagtatatag
      301 taatggcagg aagatattgc ttgatcctaa tagagggata gattgcgact tggtttttgt
      361 ctcacacgcc catactgatc atctaattcg atcatgtaaa aaaatactct cttctaggaa
      421 aactaaaacg ctaacgtcaa gagagacttc tatgattgcc cacgctagag gtttccgaat
      481 cgatgacgta acgcaggaat acgacggctt tcagctagtt aatacaggac atatattggg
      541 ttctaaagga ttgttgatag gcgatgacct ctattacaca ggcgatatct cggttagaga
      601 aagagctttc atgaaaccgg cctttatccc taaagccgat actctaataa ttgaatcgac
      661 gttcggtaga cctgagtatg tattcccaga tcttagagag gttattgaca ggacgaacag
      721 gattatttct gaaatgtaca gtcgtggcgt accagtcatc ttactaggtt atccgttagg
      781 aaaggctcaa ttacttactg aactcttttc gcattgggac cctttgtacg ttgacgattc
      841 gatttacaga atgaactgtt tatataaaga tttaggcgtt agtctaaagg agtccatgca
      901 ggtgtctttg gctgagaaga cggggttgtt aatgaggcag aagccttggc taatgatttc
      961 gccattaggc cgctcaaaaa cgacttggct gttagacata aaagaaaaat atggagcgat
     1021 caccatcggg ttcagtggct gggcagtaaa ccataggtat cgatgcttta tgggtacaga
     1081 ttatgcgatg cctataagcg atcactgtga ctttcaggaa ttgatcgacg tggttaaatt
     1141 atgcaatgca aaaaagatat acacctctca tggatactca tcggacttcg ctcagtctct
     1201 caggaaaatg ggctttgatg ctgagcctat acaacaaaag agaaaacgac aggttaaaaa
     1261 agaccgctcg agcagattcc cagattattc tctggacgac tacatcaaca aatgagcact
     1321 attttcctaa cccatctcta aagtatggaa taaccttgtt gccaaatagt tctatatttt
     1381 tgaaatagcc ttctccccaa aatctgatga tgaaatggtt cgtcccagct tttataaagc
     1441 gttctaacat ctgtatcaca tcgtcagcct ttcctacacc tattgccgtt cgggcgatac
     1501 tatctggaat ttttaaggcc gctttcttca tttgttccat aagttctggt ttgttcatag
     1561 catactccgt gaaatatcgt cgaaaatcaa attcagtatc ttgttgtatg ttgtggactt
     1621 gaagcaattc aggtttataa aggctaacct tgactgcatt tttcatctta ttccatgcct
     1681 cttctccgtc gtccgtaaaa tagacgtcaa cgtcgtttgc aaactcaaaa tgagatatat
     1741 tcctgcctat ttttttagcg ttttccgtta ttacgtcgac gtggtgtcta aataattctg
     1801 gagtatatcc tattgggatc cagccatctc catatttagc acagagttca agtgttttgg
     1861 gtgctccggc cgcaataaat attggaggcc tgggactcct aatacttttg gcctgaaggc
     1921 acgcattatt caatttgtaa tattggccat tataattaac atggtggtcc ggatctgatt
     1981 caaatagact ttcgataact tccagctgtt ctttgaactt agatactggt ttgttaaatt
     2041 ctattccaaa atcaacaaca ttttgtgcct ctccagctcc aattcctaag attgctctgc
     2101 cgtttgtaat cctgtctagg gtaatagcag aaagggcaat agatgatgga tgtcttctta
     2161 tcgcatcagt aacacaagtc cctaactcta cattgcgcgt tattgctcct atagcggcca
     2221 acatgagcca tgcatcattc acgactgcat ttttccattg ggg
//
LOCUS       DATLQL010000334         1964 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_617231, whole genome shotgun sequence.
ACCESSION   DATLQL010000334 DATLQL010000000
VERSION     DATLQL010000334.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1964)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1964)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1964
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_617231"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..279)
                     /locus_tag="VNB68_03475"
     CDS             complement(<1..279)
                     /locus_tag="VNB68_03475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36440.1"
                     /translation="MGLVVLDGVGKLIHSRKFVQPSTAYHSLSLRENRELTEIVPLLR
                     KFYSVRVSHSILLDILSKEGFRVNLLAESEQDALNKNKLDLVTKYGLCE"
     gene            complement(407..532)
                     /locus_tag="VNB68_03480"
     CDS             complement(407..532)
                     /locus_tag="VNB68_03480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36441.1"
                     /translation="MSEYEGGTFRCKICGKEFLTKFEGDSHYKEEHDEDHADVGE"
     gene            complement(596..1450)
                     /gene="lsrF"
                     /locus_tag="VNB68_03485"
     CDS             complement(596..1450)
                     /gene="lsrF"
                     /locus_tag="VNB68_03485"
                     /EC_number="2.3.1.245"
                     /inference="COORDINATES: protein motif:HMM:NF006081.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxy-5-phosphonooxypentane-2,4-dione
                     thiolase"
                     /protein_id="HVD36442.1"
                     /translation="MKQVIKMDWGMQNRISRIIGNNDGRCVMLAVDHGYFLGPTERLE
                     IPRETIKPILPFADSLMLTRGVLRTSVDPNTTVPIVLRVSGGASILGEDLSNETITTS
                     IEDAIRLNVSCLAISVFVGGKYEHRTLSNLAKLVNEGEKYGIPILAVTAVGRDMVRDA
                     RYLGLACRVAAELGAHIVKTYYCEDFEKVVEGCPVPVIIAGGKKLSNEKDVLRLTFNA
                     VKSGATGVDMGRNIWQSDYPVAMIQAVRSVVHEGFDVESAYRKFLSLKQGKVSKRELA
                     KPISTSAL"
     gene            complement(1509..>1964)
                     /locus_tag="VNB68_03490"
     CDS             complement(1509..>1964)
                     /locus_tag="VNB68_03490"
                     /inference="COORDINATES: protein motif:HMM:NF012335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HVD36443.1"
                     /translation="IDINEFRLKFALRYQNTLTFNPLQTKDISERIKELSNDIGVDST
                     IVATGNVGAFNQALTFTRRGGRILLFGVPPKNARINLELSRIYSNEFILLPSYGASEV
                     ETSQALALITDKSINVQPLVTHRFDIKQSKDAFVCAHEAVGVMKVVVTS"
BASE COUNT          565 a          441 c          325 g          633 t
ORIGIN      
        1 ttcgcacagt ccgtattttg taactaagtc gagcttgttt ttgttaagag cgtcttgttc
       61 tgattcagcg agaagattta ctctaaatcc ttctttgcta aggatatcta aaagtatcga
      121 atggcttact ctaacggagt aaaatttacg taaaaggggt acaatttctg tgagttctct
      181 gttttcacgt agcgacaatg aatggtaagc tgtagacggc tgtacaaatt ttcttgaatg
      241 aattaatttg ccgacaccgt ctaaaacaac taaccccact tcaaagagta gtacatctgc
      301 tgagttatcc aatgcagtcc tgatttgaac atgacgcgct cattaaaaaa tctaacatca
      361 aattttaaat taatacacga ttccaattcc ttgcattgtc tggattttat tctccaacat
      421 ctgcatgatc ttcatcatgt tcctctttgt aatggctatc gccctcgaac tttgttaaga
      481 attcctttcc acatattttg catctaaatg taccaccctc atactctgac acggcaatca
      541 cctcttaaag cagataatgc tttaggtaat aagaaaattt cacctggtaa agtcttcata
      601 gagcagaagt gctgatcggt tttgcaagct ctctcttaga gactttgccc tgtttgaggg
      661 aaaggaactt tctgtacgcc gattctacat caaatccttc atgaactact gatcttactg
      721 cctgtatcat ggcaaccggg taatcagatt gccaaatatt ccttcccata tcaactcctg
      781 tagctcctga cttaactgca ttaaatgtaa gtctgagaac atccttctca tttgaaagct
      841 tcttgccacc tgctataatt acaggtactg gacaaccttc aacaaccttc tcaaaatctt
      901 cacaatagta tgttttaact atatgagcac caagctccgc tgcaacccta caagccagtc
      961 cgagataacg tgcatctctc accatgtccc ttccgactgc tgtgactgcc aatataggaa
     1021 taccatattt ttctccttca ttaaccaatt tggcaagatt tgataaagtt ctatgttcat
     1081 atttaccccc aacaaataca gatattgcca gacacgagac attgagtctt attgcatctt
     1141 caatcgatgt tgttatagtt tcatttgaaa gatcctcgcc taaaatgctg gcaccacctg
     1201 aaacacgaag aactattggg accgtggtat ttggatcgac ggatgtcctt aatactcccc
     1261 gagttaacat caaagaatca gcaaagggca aaatcggttt aatggtctct ctgggtatct
     1321 caagcctttc tgttgggcca aggaagtaac catggtccac tgcaagcata acacatcgac
     1381 catcattatt tccgataatc cttgatatcc tattttgcat tccccaatcc atttttatca
     1441 cttgtttcat aattgtttat gacataaaaa cgaattcatt actcatgaaa tcttgatact
     1501 cccagatcct aggatgtcac tacgactttc attactccta ctgcctcgtg ggcgcagaca
     1561 aaagcatctt ttgactgctt gatgtcaaac cgatgtgtca ctaatggttg aacattaatc
     1621 gatttgtctg tgatcaatgc aagtgcctga ctagtttcta cttctgatgc gccatagctt
     1681 ggaagcagaa taaattcgtt agagtatatc ctactcaatt ctaaattaat tctagcattc
     1741 tttggtggta ccccaaatag caatatcctt ccgcctctcc tcgtaaaggt taaagcctga
     1801 ttaaatgctc ctacattacc agtagcaact attgtcgaat ctactccaat gtcattagat
     1861 aattctttga ttcgctcgga tatgtccttg gtttgtaagg gattgaacgt aagggtattt
     1921 tgatatctca gagcaaattt tagtctaaat tcattgatat caat
//
LOCUS       DATLQL010000335         1594 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1132433, whole genome shotgun sequence.
ACCESSION   DATLQL010000335 DATLQL010000000
VERSION     DATLQL010000335.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1594)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1594)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1594
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1132433"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..787
                     /locus_tag="VNB68_03495"
     CDS             <1..787
                     /locus_tag="VNB68_03495"
                     /inference="COORDINATES: protein motif:HMM:NF021458.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2171 domain-containing protein"
                     /protein_id="HVD36444.1"
                     /translation="ERKRTVTKQYSDFDHSIPAYNSPSISDTRATSANAQQMPGGVEM
                     SWDKIIDKKVKSSDRQDLGKVESVSTEYIEVKEGLVSKKHYYVPKYYIEGFDGEHLHT
                     SLTKDEIKAKYERDSPPAESEFRTEEYMNRKRKVEENYPQFLHGIPIMAKEPGVTLQS
                     SSSGGTVNIPWEEVIHKHVRASDNVDIGDVERVGNEFIVVREGVSKVHLYYIPKSYIN
                     NYDGSYLYINAPSGLVSAKFERDTEPTPEEIRKLSEEQPKKSF"
BASE COUNT          519 a          258 c          350 g          467 t
ORIGIN      
        1 tgaaagaaaa aggacggtta caaaacaata tagtgatttt gaccattcca ttccagcata
       61 taattcacca tcaatctctg atactcgagc gacttctgcc aatgctcaac aaatgccagg
      121 tggtgtagag atgtcatggg acaaaattat cgataagaaa gtaaagtcta gtgacagaca
      181 ggatctcggg aaagtagaaa gtgtttcaac tgagtacata gaagttaaag aagggcttgt
      241 gagtaagaag cactattatg ttccaaaata ctatattgag ggttttgacg gggagcatct
      301 acatacttcg ttgactaaag atgagattaa agctaaatat gaaagggata gccctcctgc
      361 tgagtcggaa tttcgtacgg aagagtatat gaatagaaaa cgtaaggtag aagaaaatta
      421 tccccagttc ttacacggta tacctatcat ggcaaaggag ccaggagtca ctcttcaaag
      481 tagttcgtct ggtggaactg tcaatattcc atgggaagaa gttatacata agcatgttag
      541 ggcatcagat aatgtggaca taggagatgt tgaaagagta ggaaatgaat ttattgtagt
      601 aagagagggg gtctcgaagg ttcatctata ttatatccca aaatcatata tcaacaacta
      661 tgacggtagt tatttatata taaacgcacc aagcggttta gtcagcgcca agtttgagag
      721 agatacggaa ccaacaccag aagagatcag aaagttaagt gaagagcaac caaaaaagag
      781 cttctaaata aaattttagg atcaattgag tatgctcgct aactctatac caacgtctat
      841 agagattggt tgattcaagg ttaggatatg agagcatact ccggaaattt ctttatcgtt
      901 taagattacc aaatgggccg tttaaggtaa tggcggttga tttatttttg gttcgcttta
      961 tgagcagcat gctacacgaa aggtatccat ccttactgca gtgatatgaa atgatgatga
     1021 atgatctttt ccgtaggtct tgcagacctt aagtattaac atttttaaag attctgctac
     1081 acgagtacct aatagaaaag tcgatgtggc gatattctaa ctatgatcgt cacaggaaat
     1141 atctaacggt atcatcaatt cgcactgctt tttatttttt tcaagttttg cagcattatt
     1201 acatgatatg tttttacgat tgcggtctga aactccaatg cttctaatgg catatcagta
     1261 aatgctagtt gtccatatta tcatccgaaa gccaatagaa aatcaagagc tattgagccg
     1321 attagacaga atattaaata gctgatgagc tgctagcggt tagaaaaatg gatttatctc
     1381 ttttgaacta tgctcaatat caaaaaactt ctgtttcttg tagcgttgca agggagggaa
     1441 gttgtttgca attatcttgt ttgattttgc tgcagcagcg gctgttgctg ttgtggttgt
     1501 gatgactggg gtattgttgg cagctggaaa aaaggaaatc cactactacc aagagcatag
     1561 ggcatttgac cgttccatct attgatagcc tgcc
//
LOCUS       DATLQL010000336         1225 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_617566, whole genome shotgun sequence.
ACCESSION   DATLQL010000336 DATLQL010000000
VERSION     DATLQL010000336.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1225)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1225)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1225
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_617566"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..412)
                     /locus_tag="VNB68_03500"
     CDS             complement(<1..412)
                     /locus_tag="VNB68_03500"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HVD36445.1"
                     /translation="MGVNYNVAVVTGSSSGIGFETSLVLARNNFHTYATMRNPERGTK
                     MRAVQSGENLPIKIIQLDVTSDKSVREAIQSILSESGRIDVLVNNAGYGLVGAFEELG
                     MDEIKQLYETNFFGAIRVTQAVIPIMKEQKSGKIV"
     gene            complement(575..>1225)
                     /locus_tag="VNB68_03505"
     CDS             complement(575..>1225)
                     /locus_tag="VNB68_03505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36446.1"
                     /translation="FDRFVKVVSSQSKYNKDGVINAIPIIIYHRAGDSGVVDYNTDVD
                     LFEKEMKYLHDNNFRVLTMRNLRFDETSKDLDIKEFPTAKMTMVKAIPNATIKATAPT
                     MVKAIRNPIVIEVLADTPKNTTSIVFKQPSNVALYDNATSIDLANKIIDAALSESLKA
                     DPTLTNTTKNTTSIVSKQPSNVALYDNATSIQMANKLIDAASMASFNAHGSLADRG"
BASE COUNT          323 a          242 c          213 g          447 t
ORIGIN      
        1 ttactatttt tccagatttt tgttccttca ttataggaat gacagcttgg gttactctta
       61 tagctccaaa gaagttggtc tcatacaatt gcttgatctc atccatacca agctcttcaa
      121 atgctcctac caatccatag ccagcattat taactaatac atctatcctt cctgattcgg
      181 atagaattga ttggatggct tcccttactg atttatcact agtaacatca agctgaataa
      241 ttttaattgg caagttttct ccactctgaa ccgctctcat ttttgttcct ctttctggat
      301 tacgcattgt tgcatacgta tgaaaattat tcctagctag gactagagat gtttcaaaac
      361 ctatgccact cgagctacct gtaacaactg caacgttata atttacaccc atttgactag
      421 ttttgactca gttcagactg ataaagttta acttagttca tgatgatagg tatatcttga
      481 ccattagcta aattatcagg cttaatacag attagtctat tttgtaatat ctataaaaaa
      541 cactttcaac tcatagagaa ttgaatcatc gtacctatcc acgatctgct agactaccat
      601 gagcgttgaa agacgccata gaagccgcat cgatgagctt gttagccatc tggattgagg
      661 tcgcattatc gtaaagtgcc acgtttgatg gctgtttgga tacgatgcta gtggtatttt
      721 tagttgtgtt tgttaatgtt ggatcagctt tcagtgattc agataaagct gcatcaatga
      781 tcttatttgc caagtcgatt gacgttgcgt tatcgtaaag tgctacgttt gatggctgtt
      841 tgaatacgat gctagtggta tttttaggtg tgtccgctag cacttctatt acaatgggat
      901 ttcgaattgc ttttaccata gtcggcgctg tggctttaat tgtagcattt ggaattgctt
      961 ttaccatagt catttttgct gttggaaatt cttttatgtc caggtctttg ctcgtttcgt
     1021 cgaatctaag atttctcata gtcaacaccc gaaaattatt atcgtgtaaa tatttcatct
     1081 ctttctcaaa caaatctaca tcagtgttgt aatccaccac tccgctgtcg cctgctctgt
     1141 gatatattat tataggtatt gcattgataa ctccgtcttt attatatttg ctttgactgc
     1201 tcacgacttt tacgaatcta tcaaa
//
LOCUS       DATLQL010000337         2220 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_617597, whole genome shotgun sequence.
ACCESSION   DATLQL010000337 DATLQL010000000
VERSION     DATLQL010000337.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2220)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2220)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2220
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_617597"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..918
                     /locus_tag="VNB68_03510"
     CDS             <1..918
                     /locus_tag="VNB68_03510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HVD36447.1"
                     /translation="PVVFAANASDNLMIATNSINTTQPSLISSNTNESRIKVVASFYP
                     VYEFVKEIGGNKVDVTSLIPIGVEPHDFEPTIQQIQNAQTADLVVYNGAGLEKWIDKI
                     NAKFKVEASQGLNLLMSNDTGNSGTYDLHVWLDPILAEMEVENIRDALVKIDPANTQY
                     YKANADRFIGKLNDLDDRIKTELATCNKKDFIAFHNAFTYFANRYGLNQHSVHQGLTP
                     EGEVLPQRLQGVIELARDLGLHIVYSEDLVDPRSSEVIAQEIPNGKVLILSPIEGINS
                     EEQRAGIGYLNKMNENVENLKIGLECQLK"
     gene            903..1679
                     /locus_tag="VNB68_03515"
     CDS             903..1679
                     /locus_tag="VNB68_03515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HVD36448.1"
                     /translation="MPAEIVSVENVSFGYDSSLSLENVSFKAYEGDFLGIIGPNGAGK
                     TTLFRCMLRVLLGYKGTIKLFGQDIRDDKNFLKRIGYIPQTRSIEQGFPVTVEEVVSF
                     GLIGRKYTKGKISSAIEEVGLIGYNKKRIGELSGGQLQRVLIAKSLVADPDLLILDEP
                     TTAIDMESENKFYSLLTELNKEKRMTIIWSSHDLDAIKKLANKVACINKRLFFHGDVG
                     EFFNNEKLMMSAYLESSMQAHMHSHFDVNDNDKIVDPDGL"
     gene            1648..>2220
                     /locus_tag="VNB68_03520"
     CDS             1648..>2220
                     /locus_tag="VNB68_03520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HVD36449.1"
                     /translation="MTRLLILMVFEILTFGFMQRALVAGVMIAIICSIIGLFLVLKRH
                     SLFGDAMSHVAFGGIAIGLFTNVYPLWTAFIVSVLAALGMTKLREFAKIPADSAVAVL
                     LSSGLAIGIVLISLSGGFTLDLFSFLFGSILLVSVQDLLMILIVSSIVLAIISLIYKG
                     LTYVTFDEEQAAVGGLSVKNINYLFIVIASV"
BASE COUNT          702 a          366 c          484 g          668 t
ORIGIN      
        1 ccggttgtat ttgctgcaaa tgctagtgat aatttaatga tagcgacaaa tagtattaac
       61 acaacccagc cttctcttat aagctcgaat acaaatgagt ctagaataaa agttgtagcg
      121 tcattctatc ctgtttacga attcgtcaaa gaaatcggtg ggaataaagt agatgtcaca
      181 agtctcatcc caattggggt ggaaccacat gattttgagc caaccatcca acagattcag
      241 aacgcacaaa ctgcggattt ggtagtctat aacggcgcag gtttagaaaa gtggatcgat
      301 aagattaatg caaagtttaa agtagaagcg agtcaaggct tgaatctcct tatgagtaat
      361 gatactggca attctggtac atatgacctt catgtttggc tcgaccccat cctagcagaa
      421 atggaggttg agaatatcag ggatgcatta gtaaaaatag atcccgccaa cacccaatac
      481 tacaaggcaa atgcagatag atttattgga aaattgaatg acctagacga tagaatcaag
      541 accgaactag caacttgcaa caagaaggat tttatagcgt tccataacgc ttttacctat
      601 ttcgcaaata ggtatggatt gaatcaacat agcgtacatc aggggttaac acctgaagga
      661 gaagtactcc ctcaaaggct tcaaggagtt attgaattgg caagagatct agggctgcat
      721 atagtgtatt cagaagatct tgtcgatccg cgttcttcag aagtaatagc tcaagaaatt
      781 ccgaatggaa aagtcttgat cttaagtccg atagagggaa tcaattcaga agaacagaga
      841 gccggcattg gatatcttaa taaaatgaat gagaacgttg agaatttgaa gataggtcta
      901 gaatgccagc tgaaatagta tcagtcgaga atgtatcgtt cggatatgat tcctcacttt
      961 cattagaaaa tgtttctttt aaagcatacg aaggagattt cttgggaata attggtccta
     1021 atggagcagg taaaactact ctttttcgat gtatgttacg agtactcctc gggtacaaag
     1081 gaacaataaa attatttggt caggacatac gagatgataa aaatttttta aaaagaattg
     1141 gatatatacc acagacgaga tcaattgaac agggatttcc tgttacggtt gaagaggttg
     1201 tttcattcgg attgattggt agaaagtaca ccaaaggcaa aatatcatct gcaatagaag
     1261 aagttggatt aataggatat aataagaaga gaattggtga gctttcaggg ggtcaattac
     1321 aacgtgtgtt gattgccaaa tcattggtag ctgatcctga tttgttgata cttgatgagc
     1381 ctaccaccgc cattgatatg gaatcggaaa ataagtttta ttccctatta acagagttga
     1441 ataaggaaaa aagaatgact atcatatggt cctctcacga tctagatgca ataaaaaaat
     1501 tagcgaataa ggtagcgtgc attaacaaaa ggctattctt ccatggtgac gttggagaat
     1561 tctttaacaa cgaaaaatta atgatgtcag cctatttaga atcaagtatg caggcacata
     1621 tgcactcgca ttttgacgtc aatgacaatg acaagattgt tgatcctgat ggtctttgaa
     1681 attcttacgt ttggttttat gcagcgcgcc ttagttgctg gcgtcatgat tgcaataatt
     1741 tgttcaatta ttggtttgtt tttggtgcta aaacgtcatt cattatttgg cgatgcgatg
     1801 tcgcatgtag cctttggggg tattgcaatc ggattattca caaatgtgta tccgttatgg
     1861 actgctttta ttgtctctgt attagcggcc ctcggaatga caaagttacg tgaatttgcc
     1921 aaaatacctg ctgattcggc tgttgccgtc ttattgtctt cagggctggc tataggcatc
     1981 gtactgatta gtctttcagg aggatttacg cttgacttat ttagttttct tttcggaagc
     2041 attcttcttg tgagtgttca agatttgctc atgattctaa tagtgagcag tatagtactt
     2101 gcgataattt ctcttattta taaaggacta acatatgtca cctttgatga ggaacaagca
     2161 gcagtcggtg gcctgagcgt aaagaacata aattatcttt ttatagtgat tgccagcgta
//
LOCUS       DATLQL010000338         1396 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1858601, whole genome shotgun sequence.
ACCESSION   DATLQL010000338 DATLQL010000000
VERSION     DATLQL010000338.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1396)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1396)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1396
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1858601"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..266)
                     /locus_tag="VNB68_03525"
     CDS             complement(<1..266)
                     /locus_tag="VNB68_03525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="The SIMPL domain is named for its presence in mouse
                     protein SIMPL (signalling molecule that associates with
                     mouse pelle-like kinase). Bacterial member BP26, from
                     Brucella, was shown to assemble into a channel-like
                     structure, while YggE from E. coli has been associated
                     with resistance to oxidative stress; Derived by automated
                     computational analysis using gene prediction method:
                     GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HVD36450.1"
                     /translation="MGHFCNRNKEKFAVTAAISILSVIILIGIEHNFANISAQTAMAN
                     NTLIVSASASNQTKPDKVTVSLGVETIDDTAQTALTSNSDLMNKV"
     gene            complement(436..924)
                     /locus_tag="VNB68_03530"
     CDS             complement(436..924)
                     /locus_tag="VNB68_03530"
                     /inference="COORDINATES: protein motif:HMM:NF015763.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36451.1"
                     /translation="MLGPFGSSLVTGLVFGLGFDTATQISAITLSAVASATLGVQVAL
                     ILAGFFAMGMIPVDTLDSIMLRSAFSRIVDKKGFRYMSFALSGAAMTVAAAASYKILT
                     GSDILPELTGPILAGVIIGSSFAYAFGMSRRRRGSRVLQKVAKDDYSDSDKDLYFSAT
                     KK"
     gene            complement(918..1292)
                     /locus_tag="VNB68_03535"
     CDS             complement(918..1292)
                     /locus_tag="VNB68_03535"
                     /inference="COORDINATES: protein motif:HMM:NF015763.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36452.1"
                     /translation="MADLWAFVLVSIPAMIILGLRHALDVDHITAIDNLVRLHNAARK
                     ARWVGAGFSIGHMVSVLAEMILIIYVIGSVTGADVLSFWGGIIGAIALATIGAVNIYS
                     MKRWEKLDLPFLPVRFWLEREC"
BASE COUNT          455 a          301 c          240 g          400 t
ORIGIN      
        1 accttgttca tcaggtcaga gtttgatgtc aacgctgttt gtgcagtatc atcaattgtc
       61 tctactccta aagagacagt aaccttgtca ggttttgtct ggttagacgc ggaagccgat
      121 acgatcaatg tattatttgc catagctgtt tgggcactaa tattggcaaa gttatgttct
      181 ataccaatca ggattatgac agaaagaata gagattgcag ctgttacagc aaatttttct
      241 ttgtttctat tacagaaatg tcccatgtag tcaattaatt tcccatcgaa ataagtattt
      301 tgagagattt ttcttttgta tgagaagctt aattgaatag cagcagcaag aaactatgta
      361 ccgaacatgg aatacagtag ttacgaaact attgagatgc ttaggtgacg tactgaaact
      421 tattcaatgg aaatgctatt tctttgtagc tgaaaaataa agatccttat cgctatctga
      481 ataatcatct ttagcgacct tttgcaatac tcggctacct ctccttcttc ttgacattcc
      541 gaaggcatac gcaaatgatg aaccaattat tacccccgct aaaatgggac cggttagctc
      601 tggcaatata tctgacccag ttagaatttt ataagaagca gcagcagcca cggtcatcgc
      661 agctccactt aatgcaaatg acatatatct aaatcccttt ttatcaacta ttcttgagaa
      721 agctgaacga agcataatgc tatcaagtgt atctacagga atcataccca tagcaaagaa
      781 gcccgccagg atcaacgcca cctgtacgcc aagtgtagca gaagcaacag ccgaaagagt
      841 aattgctgaa atttgagtag cagtatcaaa acctaatcca aatactaatc ctgtaacaag
      901 agaagatcca aatggtccta acattcccgt tctagccaaa atcttactgg caagaatggc
      961 agatccagtt tttcccatct tttcattgaa taaatattta cagcacctat tgttgccaaa
     1021 gcaatagcac caatgatgcc accccaaaac gaaagaacat cagctcctgt gacgcttcct
     1081 attacataaa tgatcaagat catttcagct aggactgaaa ccatatgacc aatgctaaat
     1141 cccgcaccta cccatctagc ctttcttgct gcattatgaa gtcttacaag gttgtctatt
     1201 gccgtaatat gatcaacatc aagtgcatgt ctcagtccta atatgatcat agctggaatt
     1261 gacactagaa caaaggccca caaatcagcc attcatactt tttgataaac tagtattact
     1321 taaactttga aataattatt caccgaaata aagccagcaa actattcaca cagctcagga
     1381 acgaccttgt tcggag
//
LOCUS       DATLQL010000339         1077 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2215868, whole genome shotgun sequence.
ACCESSION   DATLQL010000339 DATLQL010000000
VERSION     DATLQL010000339.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1077)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1077)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1077
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2215868"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..848)
                     /locus_tag="VNB68_03540"
     CDS             complement(<1..848)
                     /locus_tag="VNB68_03540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NOL1/NOP2/sun family putative RNA methylase"
                     /protein_id="HVD36453.1"
                     /translation="MPQVKNCLEEMEKTPRQYIRANNLKINSGSLKQRLLTKGIELEE
                     TSLPEVFEVKKSPFSIGSTLEYLLGYYYIQDLSSCLVVEAMDLCENLTVLDMASSPGG
                     KTSFIAQKMKNTGCIVALEPNSLRLRPLIFNLSRCGIINTCVFRMDGKKSPELNIKFD
                     RVLLDAPCTGEGIIGKDRSRKISHKPEDIEACTILQMELIEAAARVVKPGGLLIYSTC
                     SFAPEENEFVINSLIDKFDIKVEALPFGSEGLTFFAEYNFNNDMKNTRRLYPHLHNTM
                     GFYIAK"
BASE COUNT          305 a          217 c          200 g          355 t
ORIGIN      
        1 aattttgcaa tatagaagcc cattgtatta tgaagatgag gatataatct tcttgtgttt
       61 ttcatgtcat tattaaaatt atactctgca aaaaacgtca acccttcact accaaatggg
      121 agcgcttcga ccttaatatc aaatttgtct attaaagagt ttattacaaa ttcgttttct
      181 tccggcgcaa aagagcacgt cgaatagatg agcaaaccgc caggcttgac aactcttgct
      241 gcggcttcaa tgagttccat ttgcagaatt gtgcaagcct ctatatcctc cggtttgtga
      301 cttatcttcc tcgatctatc ttttccgatt ataccttcgc cggtgcatgg agcgtcgagt
      361 aagacgcgat caaactttat gttcagctct ggtgacttct taccatccat tctaaagacg
      421 caggtgttaa ttatgccaca acgcgatagg ttgaatataa ggggtcttaa tctaagtgag
      481 tttggctcta gtgcaacaat gcaaccagta tttttcattt tctgagcaat aaaacttgtt
      541 tttcccccgg gagaggatgc catgtccaaa acagtcaggt tttcgcataa atccattgct
      601 tctactacta gacaggagct gagatcttga atgtaataat agcccagtaa gtattctaga
      661 gttgagccta tcgaaaaagg agatttcttc acttcgaaaa cctctggcaa ggatgtctct
      721 tcaagctcaa ttcctttcgt aagaagtctt tgcttcaggc tgccgctgtt tatcttgaga
      781 ttgtttgctc tgatgtactg ccttggagtt ttttccattt cttcaagaca attctttact
      841 tgaggcatat atcgtagaaa tcttccaaca atccattcgt cataaccgta tttcctagaa
      901 agcgcataag attcagaaga agctgaaaag gtacgagttt tcaagaataa atggttaagt
      961 tttctctaat ttatttcgtt aaaactctag tcaaggttat cagtcttcct tcggaatatc
     1021 ttttagcatg cgtaaagtag gtacatactc aaaattgttg ttagttgaaa agcctca
//
LOCUS       DATLQL010000340         1113 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2569535, whole genome shotgun sequence.
ACCESSION   DATLQL010000340 DATLQL010000000
VERSION     DATLQL010000340.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1113)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1113)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1113
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2569535"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..288
                     /locus_tag="VNB68_03545"
     CDS             <1..288
                     /locus_tag="VNB68_03545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36454.1"
                     /translation="TATWNLVVSSSPKEFTGISVGVGALLLFIGMAIGPALAGVYMKN
                     HETIVGVEGSYPSPGSYNLVFLTGGLLSTASLVFALMLNRRLSHMEIEVQR"
BASE COUNT          356 a          196 c          231 g          330 t
ORIGIN      
        1 actgcaactt ggaacttggt agtatcgtca tcgccaaaag agtttacagg catatcagta
       61 ggagtgggcg ctctcctgtt gttcatagga atggctatag gccctgcatt ggcaggggtg
      121 tatatgaaga atcacgagac cattgtagga gtcgaagggt catatccttc acctggatca
      181 tataatcttg tgttccttac tggaggattg ctgtcaacag cctcccttgt atttgcattg
      241 atgctcaaca gaagactatc tcacatggaa attgaagttc aaagataaca aaggcagttc
      301 gcaatcctcg ccacattaac atttcttaga ggctcaagtg gaaatagttt tgatataaca
      361 aagaatatta aaatagtata aattggccag agtcatgtca ctttaagatt tctaactcaa
      421 agtaaattgt tctgtaggat ggactaattg aaagtgcaga gataatgcca catagtaata
      481 gaaaaacctt ctaatatctt caattccttt tacttaccaa gacaaatatc cataaatgtc
      541 atatcatgat tctctatagg atatattgaa tcctaaagcg caacggcaac aatgaaaaaa
      601 aaccaacttg aaaagtgtat gcatattttc tagatgcttg taattgtgac ttgtcagttt
      661 aatgctaaac ccactcatgg taattgtgaa ggagtatctg ggtaccatat agtaactggt
      721 agatatggaa ctactgttag actagatgga cttaatatgg cattaatagc ttcatggccg
      781 agatggctgg aatgctacta ggtgtaggac ttattagtct acttcccttt atgggtctta
      841 catgcagatg gtgtacaggt agcggttaga gttaggataa cacgtcttag tagatgaata
      901 ataggtttgc gagatatgca tgaaacagta aagttaacaa ggcagagaag aattagctcc
      961 aaaacgatgt ttgggcaact actgctgcca gttcatttag ttcttcttca ctagcaccat
     1021 acatgattgc gccttcacta tggaatgtct tatctaaaga agggctgatt tacaataatt
     1081 ggcagactaa aataaaatgt agccccgcct ctt
//
LOCUS       DATLQL010000341         1043 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_619050, whole genome shotgun sequence.
ACCESSION   DATLQL010000341 DATLQL010000000
VERSION     DATLQL010000341.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1043)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1043)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1043
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_619050"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            14..>1043
                     /locus_tag="VNB68_03550"
     CDS             14..>1043
                     /locus_tag="VNB68_03550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin family protein"
                     /protein_id="HVD36455.1"
                     /translation="MMAIAVVSLIAGFAVYFNSPGLNKATSSQQQVEKFVSAATTQNT
                     TTTTIKLDKGKFQQIDKSEFRKAPEFAQISGYLNTSPNIKLADLKGKVVLVDFWTYTC
                     INCIRTIPYLNDWNQKYADKGLVTVGVHSPEFEFEKNYDNVKAAVQKFGIKYPVVQDN
                     DHGTWNAYANQYWPRDYLIDVDGYIRHDHIGEGGYAETEKAIQSLLAERAVQMGMKEI
                     SFSTKATIPIKPGSLQSVDLTKSTTPEIYLGYFLARAPLGNPQNFEPDQIVSYTIPSN
                     TNFKPNIVYLDGQWKNNRDNMELQSNTGRIALTYYAKAANIVASGKGQTGTVTDDGGG
                     IRATAKMSN"
BASE COUNT          382 a          190 c          205 g          266 t
ORIGIN      
        1 cttgagtgca ttaatgatgg caattgcagt tgtatcactg attgctggat ttgctgtata
       61 tttcaatagc cctggtctta ataaagctac gtcatcacaa caacaagtag aaaagttcgt
      121 atcggcagct actacccaaa atacaactac aacaactatt aagcttgaca agggcaaatt
      181 ccagcagata gacaagtccg agttcagaaa ggcaccagaa tttgctcaaa ttagcggata
      241 tttgaataca agcccaaaca taaaacttgc agatttaaaa ggcaaagttg tgctagtaga
      301 cttttggaca tatacatgta tcaactgtat acgaaccatt ccttatctta atgactggaa
      361 tcaaaaatat gctgataaag gattagtaac agttggagtt cattcacctg agtttgaatt
      421 tgaaaagaat tacgataatg taaaggctgc tgtccaaaaa tttggaataa agtatcctgt
      481 agtacaagat aatgatcatg ggacatggaa tgcctatgcc aatcagtatt ggccgaggga
      541 ctatcttatt gatgtcgatg gatacattag acatgatcac atcggcgaag gtggatatgc
      601 tgaaacagaa aaagctattc aatcattatt agctgaacga gcagttcaaa tgggtatgaa
      661 agaaataagc ttcagtacta aagcaacaat accaattaag ccagggagct tgcagtctgt
      721 agatctaaca aaaagcacaa caccagaaat ctacctagga tatttccttg caagagcacc
      781 gctaggtaat cctcaaaatt ttgagcctga ccagatagtt tcatacacta ttccctcaaa
      841 taccaatttc aaacccaaca tagtatacct tgatggtcaa tggaaaaaca atcgcgataa
      901 tatggaatta caaagcaaca cgggtcgtat tgcattgacc tattatgcaa aggctgcaaa
      961 catagtagca tcagggaaag gtcaaacagg tactgttaca gatgatggag gaggaataag
     1021 agcaacagca aagatgtcaa ata
//
LOCUS       DATLQL010000342         1042 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2217074, whole genome shotgun sequence.
ACCESSION   DATLQL010000342 DATLQL010000000
VERSION     DATLQL010000342.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1042)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1042)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1042
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2217074"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(11..640)
                     /locus_tag="VNB68_03555"
     CDS             complement(11..640)
                     /locus_tag="VNB68_03555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HVD36456.1"
                     /translation="MEKINDLLKDLEGRRESLIKGTRDVVILCAKGIVSIHNGDNIEA
                     EKMFSQAKDLLANFKNIARTDLAKYLSVPEQELTEGLSLLSIVRSSKIPSMEDIDVDG
                     PSYVLGLLDCIGEIKRIIYDKLRKNKVEDIENLFKIMDDIYGSIYPLAVFDNLVPGLR
                     KKLDVSRHLIEDVRSMMTEEERRRVLMKRIDAFAESPQPFSAEDGQQKN"
     gene            751..>1042
                     /locus_tag="VNB68_03560"
     CDS             751..>1042
                     /locus_tag="VNB68_03560"
                     /inference="COORDINATES: protein motif:HMM:NF013987.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36457.1"
                     /translation="MILHLEIFSATAKKIKKSLKVGHTNFGSLANIRRSRGYGFEHTL
                     VQKFNRTRWDARRLGGSSTNLPDIVAVNNVHSILLSIEAKSGTSDNLYVPSDQ"
BASE COUNT          301 a          222 c          180 g          339 t
ORIGIN      
        1 tattttcatc tcaatttttc tgctgtccat cctcggctga aaagggttgt ggactctctg
       61 caaacgcatc tatcctcttc atcagaactc tccttctttc ttcctcagtc atcattgacc
      121 ttacatcttc tatcaggtgt cttgatacgt ccaatttttt tcttaaccct ggaaccagat
      181 tatcaaacac tgcaagagga tatattgatc cgtagatatc gtccataatc ttaaaaagat
      241 tctcgatatc ttccacctta ttttttctaa gtttgtcgta aataattcgc ttgatttcac
      301 caatacaatc caagagacct agaacgtaag aaggaccatc cacgtcgata tcctccatac
      361 taggaatctt agaggatctt acaatcgaaa gaagcgatag tccttcagtt agttcttgtt
      421 cgggaacaga caaatacttg gctagatccg ttcttgcaat gtttttgaaa tttgcgagaa
      481 gatcttttgc ctgtgaaaac atcttttctg cttctatgtt atcaccatta tgaatggata
      541 caataccttt ggcgcataaa atgactacgt cccttgttcc tttgatcaga gattctcgtc
      601 tgccttccag atctttcagc aaatcattga ttttttccaa gtctgatgtc acattcgata
      661 gcatggcata atatgttgtt tgactctgat ataatcgctc tttacaagta gcagagtgtg
      721 ctgtcagaat attgttaaag ccagaaaact atgatattac acctagaaat tttctcagcc
      781 accgcaaaaa aaattaaaaa aagtctaaaa gtagggcata caaattttgg atcgttggcg
      841 aatattcgac gcagcagagg ttatggtttt gaacatactc tcgttcaaaa attcaataga
      901 acaaggtggg atgcccgccg ccttggaggg tcaagtacta accttcccga tatagtggca
      961 gtcaataatg tgcattctat cttattgtct attgaagcaa aatctgggac cagcgataat
     1021 ctatatgtgc cttctgacca ga
//
LOCUS       DATLQL010000343         1265 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1683595, whole genome shotgun sequence.
ACCESSION   DATLQL010000343 DATLQL010000000
VERSION     DATLQL010000343.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1265)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1265)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1265
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1683595"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..536)
                     /locus_tag="VNB68_03565"
     CDS             complement(<1..536)
                     /locus_tag="VNB68_03565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0050504 - mannosyl-3-phosphoglycerate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0051479 - mannosylglycerate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mannosyl-3-phosphoglycerate synthase"
                     /protein_id="HVD36458.1"
                     /translation="MKLDVPRYTERFGAISLHGVQRVYELDSGFDNVRQASESIRSIG
                     NEEIFEIEKKMAIVIPIKGERLKLLEGVLSGIPHDCLTIIVSNSPRQPVDRYKLEKEA
                     LEQFNRFVGKNAVILHQKDPGLSDALKEVGYTSIFGPDDIVRNGKAEGMITGMLLAKM
                     AGKEYVGFIDADNYVPGAV"
     gene            complement(901..>1265)
                     /locus_tag="VNB68_03570"
     CDS             complement(901..>1265)
                     /locus_tag="VNB68_03570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="elongation factor EF-2"
                     /protein_id="HVD36459.1"
                     /translation="GSILIADPVLLEPILGIEVKCPQEQIGTVAGVLSGKRGKLLNVD
                     QKGLISIIQGEVPAAETFDLSEVMRGGTAGKAMWSTYFKTWQAVPQSILRSIVADIRK
                     RKGLNPEPPGPDEFIDKE"
BASE COUNT          345 a          283 c          214 g          423 t
ORIGIN      
        1 actgctcctg ggacatagtt gtctgcgtca atgaagccaa cgtactcttt tccggccatt
       61 tttgccagaa gcattccagt tatcatgcct tcggctttac catttctaac aatatcgtca
      121 ggaccaaaga tactagtata cccgacttcc tttaatgcat cggataatcc agggtctttt
      181 tgatgtagga tgaccgcatt ttttccgaca aatcggttga attgttccaa agcctccttt
      241 tctaatttgt atctgtctac tggctgtctt gggctatttg atacaatgat tgtcaagcag
      301 tcatgcggga tcccacttaa taccccctct agcaatttca atcgttctcc ttttataggt
      361 ataactatcg ccatcttttt ctcaatttca aaaatctcct cattgccaat actacgaatg
      421 ctttctgatg cttgtctgac gttgtcaaat cctgaatcta attcatagac ccgttgaacc
      481 ccatgtaggc taatcgctcc aaatcgttca gtgtagcgtg gtacatcgag tttcatgtga
      541 gttactgtaa ttatttataa ctttttgata aacctatctc attttcgtac tatggaattt
      601 taattttact atgataagta ggcaagatag atcgagctaa tgcttatcga tcaggtacca
      661 ttaagtgatt tcttgtttca tttcaaaatt gctatttgtt ctcactagaa gccccaacct
      721 gggagtcagt ccgcaattta tgataaccca gcctacaaaa tggctatata tagtaataca
      781 ggtagccctg ccctcctcga gttaaagaat actgatacgt atagaagaaa ctaaaggtat
      841 tttctgtacc atagtttcta tgtcctcagg atctcacata aatgattgga agcaaagaat
      901 ctattctttg tcgataaact cgtcaggacc gggcggttca ggatttagac cttttctttt
      961 tcttatatct gcaactatac ttcttaatat cgactgcgga acagcttgcc atgtcttaaa
     1021 gtaagtactc cacatagcct tacctgcagt tcctcctcgc ataacctcgg aaagatcaaa
     1081 tgtttccgca gcaggaactt ctccttgtat gatagaaata agaccttttt gatccacgtt
     1141 tagtaacttg cctctttttc cagataagac accagccact gtgcctattt gttcttgagg
     1201 acatttaact tctataccaa gtattggttc aagtaaaacc ggatctgcaa taagaataga
     1261 tccta
//
LOCUS       DATLQL010000344         2032 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1683639, whole genome shotgun sequence.
ACCESSION   DATLQL010000344 DATLQL010000000
VERSION     DATLQL010000344.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2032)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2032)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2032
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1683639"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(296..481)
                     /locus_tag="VNB68_03575"
     CDS             complement(296..481)
                     /locus_tag="VNB68_03575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36460.1"
                     /translation="MFSRLGIFKRKDKDKDKDKDGGKEQKRAFKCKHCDMEFEDKQRM
                     KLHGKKAHMGRGEAKKK"
     gene            complement(593..1021)
                     /locus_tag="VNB68_03580"
     CDS             complement(593..1021)
                     /locus_tag="VNB68_03580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36461.1"
                     /translation="MGVTLSKSKVYQLPSSVEVLGAISDTRSLHMFKVLESGALDSQT
                     IIKRLKLTRKEYYSRMSRLTKVNLVYRRENGTYSFTSLGKEFNTAVKLMEDATNISWK
                     LDALDAVERLANTSKEHMLNLIDSLIDDTKIREILRKNYM"
     gene            1456..>2032
                     /locus_tag="VNB68_03585"
     CDS             1456..>2032
                     /locus_tag="VNB68_03585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HVD36462.1"
                     /translation="MSRLYTKRLDNSGFNPNLYMRRLNDHDHGDGEGDREQFTADEST
                     IRPASNSNIAISGLSFENTAETFVELASEQRLSILFKLAAKGANLSGLSKELNITMQE
                     VHRNLNRLMETGLIKKDSQGTFTLTTFGNTILKQIPTYDFLSRNKEYFSEHTLGDIPM
                     KFIQRIGALTNSEYIPGMVAAIELWKELYNNS"
BASE COUNT          598 a          400 c          380 g          654 t
ORIGIN      
        1 attccagctg tatttctggg tattactggt gcaatcatct ctttaaagaa aattaaagaa
       61 ccacgacagg aaaaggaaca tcaacaacat aatccttcaa agcgtgtcga gcggtaggat
      121 cggagagtca gtaaactttt agatgtgagc gaaaatcgct ataaaatcgt ggagcgaaag
      181 tcataatctc tgatatgaga tacagctagt ggaatttttc tgttgttggg ttcctattaa
      241 taggacttat ctaatttttt tacggtgatc ctgttagatt aatttcgttc attgctcatt
      301 ttttctttgc ttctcctctt cccatgtgag cttttttacc atgtagtttc attctttgct
      361 tgtcctcaaa ttccatatcg caatgcttgc atttgaaggc cctcttctgc tctttacctc
      421 catccttatc cttatcctta tctttatctt tcctcttgaa gatgccaagt ctgctgaaca
      481 tggttatcgt aaagcgtttt aatttaataa attttgttga tgaaagatcc tcatatttgc
      541 agtaaatcag acagtcaagt acgtagtcat aagatactat tatgcaagcg agctacatgt
      601 agttctttct aagaatttct cttattttcg tgtcatcgat taaactgtca atgagattga
      661 gcatatgctc ttttgatgtg tttgccagtc tttccactgc gtctagtgca tccaatttcc
      721 aggaaatatt tgtcgcatct tccatcaact taacggcagt attaaattct ttacccaaag
      781 aagtgaaaga atacgttcca ttctctcttc tatataccaa attgacctta gtcaatcgcg
      841 acattcgtga atagtattct ttacgggtaa gtttcaatcg tttaatgata gtctggctgt
      901 ctagagctcc tgactctaga actttaaaca tatgcaacga tctagtgtct gaaatagcgc
      961 ctaacacttc tacagaggat ggcaattgat aaaccttaga tttactcaat gtaacaccca
     1021 tgacactcca ttccttctct cttcttaagc cctgctaagt catttcttag ctcgcatcct
     1081 ctctctagca acctgccgta gatattacga caatgttttg aaatcccagc attagtaagc
     1141 gaggcgcctg tcatatcacg ttcgtttcga ttcagtttag ataagacact gatatgactc
     1201 ttcgtacagc cgaggataag ttcaaagctt gttttgctaa tatatgaggg tagtccttcg
     1261 ctggaagtgt tcatgtagtt tcactgcggt tgtaatatga aaactttcct ttttggtaat
     1321 taattaaata tcttgtcctg agaaggctta aaatcagtat tgaatgattt ctcttaaaag
     1381 ctagcataaa tctctagtga taaattcgaa attattatta tcagataaaa ttagtgaacc
     1441 ggtatttgga gcagattgag ccgtctatat acaaaaaggt tagataatag cggatttaac
     1501 cctaacttgt atatgaggcg gttaaacgat cacgaccacg gcgacggcga aggggaccgc
     1561 gagcaattca ctgcagatga atcaactata aggcccgcat cgaatagcaa catcgctatc
     1621 tccggcctta gttttgagaa tacagccgag accttcgtgg agctggcgag tgaacaaagg
     1681 ttatcgattc tgttcaaatt agctgcaaaa ggggctaatc tttcaggcct ctcaaaggag
     1741 ctaaatatta ctatgcaaga ggtccacaga aacctcaata gactcatgga aacagggtta
     1801 attaaaaagg attcgcaagg gacgttcact ctaacgacat tcggaaatac gatattaaag
     1861 cagattccta cgtatgactt tctttctaga aataaagaat atttttctga gcatacatta
     1921 ggggatatcc ctatgaaatt catccaaagg ataggagcat taacaaactc tgagtatatt
     1981 ccaggaatgg tagctgctat cgagctgtgg aaggagctgt acaataattc ta
//
LOCUS       DATLQL010000345         1714 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_264592, whole genome shotgun sequence.
ACCESSION   DATLQL010000345 DATLQL010000000
VERSION     DATLQL010000345.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1714)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1714)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1714
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_264592"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(266..601)
                     /locus_tag="VNB68_03590"
     CDS             complement(266..601)
                     /locus_tag="VNB68_03590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36463.1"
                     /translation="MTFPNYPLDQYSESAMGQLKSVFPEFRLEHLDANASLSGYPAYK
                     IDYSYVINTQEGPIKIKNLQVWTISGDNAYILTFGMESSKYSDYAPLIDDMINSFKIV
                     QSQTAALNT"
     gene            complement(1090..>1714)
                     /locus_tag="VNB68_03595"
     CDS             complement(1090..>1714)
                     /locus_tag="VNB68_03595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36464.1"
                     /translation="VALHLTVTPHFHMRLEYSVNPPPTISVRSNIWITVPIGALIVAI
                     LTANLLLLNYVHVFTSMLWTGTDIFMAFLLGPILRGVSLSTRKEVISWLMPKMVFYMP
                     TVASVTTTAGYFLASKMGLITLQTPVLYWITAVLIIVVAMLIQGLGILLPTNLRVYYE
                     LRKSEPDMARIQRLMRRYVKVVATQAILQFVIIFIMANFATGFFLRL"
BASE COUNT          529 a          310 c          345 g          530 t
ORIGIN      
        1 tatttctaag cttggttgca agttctcaac atagtttagt cagacttatg aaatggtttg
       61 acttgttgtc gataatcgct ttaaatgatg ttgtctattt aatatctata ggttgttcgg
      121 gtttcggctc cgttcaccga acataatgat agaggggaaa gccaaacacg gagctggctg
      181 aatcccttat ccatacacta aagttggaat atccacagta aacttggcta cagatccgta
      241 ttagactgat actgtgctag ctcatctaag tattcaaagc ggcggtttgc gactgaacta
      301 ttttgaaaga attgatcata tcgtctatga gtggggcata atcagaatat tttgatgatt
      361 ccattccaaa agtaagtatg taggcgttat ccccactaat ggtccagact tgtaaatttt
      421 taatcttgat tggtccttct tgagtattaa tcacataact atagtctatt ttgtacgctg
      481 gatatccaga taatgatgcg ttggcatcta agtgttccaa acggaattca ggaaaaactg
      541 attttaactg gcccatagct gattcagaat actgatctag cgggtaatta gggaaggtca
      601 aacgctctat gcctatatta aaagtttcag taaatttgtc ttgtgaattt tcaagtggcg
      661 atgtgaaagt tactattata gtgtcacctg gctgtccctc atgtttttgc caatcggcgg
      721 ggtactgaac tatgaatcaa tgtgcatcat tcttgtaagt taaagttggg ttattacttt
      781 gggcaaatac tagtacaagc ggcacgatta gaagaacaag gcatacaact gcgaccgagg
      841 ttattttcat tgaattattc attgctagtc tgttattgta tatggacatt ctaatcgatt
      901 agaaacatct ggttattaaa gcatgtcaaa ctaaattata gctggctagc tctatgctac
      961 cgtaagaaaa tttgtcttct tttctttcat tgttaaataa ccaatgaatc ccaaaatcgt
     1021 gtcaaatttg attcacatac atttgacgat gccaaagcat ggatcaatga aattgattga
     1081 tcgaccgttt tagagcctga ggaagaatcc agtagcaaaa tttgccatta tgaatattat
     1141 cacaaactgg agtattgctt gagttgcaac gactttgaca tacctacgca tcagtctctg
     1201 aatcctagcc atatcaggtt cgcttttcct caactcataa tagactcgaa gattcgtggg
     1261 aaggagtata cctagcccct gaataagcat tgctacaaca ataattaata ccgcagtaat
     1321 ccaatataga actggagtct gtagggtaat caaacccatc tttgaagcga gaaaatagcc
     1381 cgctgttgtt gttacagatg cgacagttgg catatagaat accatttttg gcataagcca
     1441 agaaataact tctttacggg ttgagaggct tacgcctcta agtattggac caagcaagaa
     1501 ggccataaag atatcagttc ctgtccaaag cattgaagta aaaacatgaa catagttgag
     1561 aaggagcaaa ttagcagtca gaattgctac aatcagcgct cctattggca ccgtaatcca
     1621 aatatttgat cgtacagata ttgtcggcgg tggattcact gaatattcca atcgcatgtg
     1681 aaaatgtgga gtgacagtta aatgtaacgc tact
//
LOCUS       DATLQL010000346         1114 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_443123, whole genome shotgun sequence.
ACCESSION   DATLQL010000346 DATLQL010000000
VERSION     DATLQL010000346.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1114)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1114)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1114
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_443123"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(211..>1114)
                     /locus_tag="VNB68_03600"
     CDS             complement(211..>1114)
                     /locus_tag="VNB68_03600"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HVD36465.1"
                     /translation="IDDEEATKLLKRAYDLGITFYDTADMYGKGRSEKLIGKTFKGMR
                     NEIVYSTKWGYDFYNVEQVGHNELPQLHDSTFINLSLGHSLERLQTDYVDVYSLHNPK
                     MPALENLDLFSSLEKLMKDGTIRSHGVALGPAIGWENEGMLAIRERSITCLQTVYNIL
                     EQDPGNTFLKEAEKYNVGVMTRVPDASGVLTGKVNENTVFDKNDHRNSRKREWIIGAL
                     GKVQKLKYIADEKGWDVTELAIKFILSQKQVSVVLPTITSMKELENFVSFSDGNYLNS
                     MDLKRISDMYANNFYVNAVQPSQS"
BASE COUNT          310 a          233 c          202 g          369 t
ORIGIN      
        1 aatctagggt agaagaagtt tacctggttg actttcacta cctattggat tttgaaggag
       61 tgctcctacc aatctagaca tgaaatagtc taataaaaaa gcctcttgat cacgagtaac
      121 ttgatggaaa attatgtctg cacgttttgc acgtcaggta gtccgtaagc gaatagcgag
      181 tgggacattc gacaagtaca acaaattgta ctatgactgg cttggttgaa cagcattaac
      241 atagaaatta ttagcataca tgtcagaaat gcgtttgaga tccatgctgt taagataatt
      301 cccatcggag aagctgacaa agttttctaa ttccttcatg ctggtgattg taggcaagac
      361 aactgaaacc tgcttttgag aaagaatgaa ctttatagca agctcggtta catcccaacc
      421 tttttcatca gcgatatact tcaatttttg aacttttcct agcgctccaa taatccattc
      481 tctttttcta ctgttgcggt ggtcgttctt atcgaatact gtattctcgt taactttgcc
      541 tgtaagaacg ccggatgcat caggaactcg tgtcatcact cctacattat atttttcagc
      601 ttccttcaaa aaggtgttgc ctggatcttg ttcgagaata ttatatacag tttggagaca
      661 ggtaatgctt ctttctctaa tcgctaacat tccctcattt tcccagccta tcgccggacc
      721 aagagctacg ccatgacttc taatcgttcc atctttcatg agcttttcta gtgaagagaa
      781 gagatctaga ttttctaaag ctggcatctt gggattgtga agactataaa catctacata
      841 atcagtttga aggcgttcta gactgtgccc aagtgaaagg ttaataaaag ttgaatcatg
      901 taactgcggt aattcgttgt gaccaacttg ttcgacatta taaaaatcgt atccccattt
      961 tgttgaatag actatttcat ttctcatacc tttgaatgtc ttgcctatca gtttctcgct
     1021 tcttcccttc ccatacatat ctgcagtatc atagaatgta atacctaaat cataggccct
     1081 ctttagcagc ttcgttgctt cttcgtcatc tatc
//
LOCUS       DATLQL010000347         1193 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1329588, whole genome shotgun sequence.
ACCESSION   DATLQL010000347 DATLQL010000000
VERSION     DATLQL010000347.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1193)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1193)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1193
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1329588"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..716)
                     /locus_tag="VNB68_03605"
     CDS             complement(<1..716)
                     /locus_tag="VNB68_03605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36466.1"
                     /translation="MDGISGRQDIGGIEYLVSVLKAPTIPVIMAANSRDTKIRDLAKI
                     SKVIEFEPIHPRLLLLYINHILKKHNVTLSPEDKFSIVRSSNGDVRALLNNAQSISAG
                     YDAYKEDSFDVDIKSAVNLFFSCLSAEEAKKILSRTDAVYIDPRFGISSDERRRDIVN
                     ALFSSILSSRIDISILAIMLDILSKIDVLVGRMGTNRHWSLLKYFDTLIAYGLFYISR
                     NKAIKYSQYNMAWPLMGPILA"
     gene            complement(717..1022)
                     /locus_tag="VNB68_03610"
     CDS             complement(717..1022)
                     /locus_tag="VNB68_03610"
                     /inference="COORDINATES: protein motif:HMM:NF015191.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HVD36467.1"
                     /translation="MMWVESSRPRTVEELIGNEEARLAIIKWLAEWVIGSKPLLLLGP
                     PGVGKTTVVQALSFQFDYDLIEMNASDTRNREVLLNRIIPAFKNTSLLEKKMLLFLD"
BASE COUNT          346 a          252 c          205 g          390 t
ORIGIN      
        1 gccaagatgg gacccatgag aggccaagcc atgttatact ggctgtattt tattgcttta
       61 tttcgactaa tataaaacaa gccatatgca atcagagtgt cgaagtattt tagaaggctc
      121 cagtgtctat ttgtccccat ccttccaact aacacatcta tttttgagag aatatctagc
      181 attatggcta aaatactgat gtctatacgt gacgaaagaa tacttgaaaa aagtgcgttt
      241 actatatccc tcctcctttc gtcacttgag ataccgaagc ggggatctat atacacagca
      301 tccgtccttg ataatatttt cttggcttcc tctgctgaaa gacaggaaaa gaatagattt
      361 acagcacttt ttatatccac gtcaaaagaa tcttctttat acgcgtcata gccggcagat
      421 attgattgtg cattgtttaa aagcgctctg acatctccgt tgctgctacg aacaattgaa
      481 aatttatcct ctgggctcaa agtgacgtta tgttttttta gtatgtgatt gatgtatagc
      541 agtaataacc taggatgaat tggttcgaat tctattacct tgctgatctt tgccaaatct
      601 ctaatctttg tgtcacgaga atttgctgcc ataatgactg gaatagtcgg tgctttcaag
      661 acacttacca gatattcaat ccccccaatg tcttgtctgc cagaaattcc atccacctag
      721 tctaaaaata ataacatttt tttttctaat agacttgtat tcttgaaggc tgggattatt
      781 ctatttagaa gaacttccct attccttgtg tcactagcat tcatctctat caagtcgtaa
      841 tcaaattgaa aagatagagc ctggacgaca gtagtcttcc ctactccagg tgggccaaga
      901 agaagtaacg gcttgcttcc aatgacccat tcagcaagcc attttataat tgctaaccta
      961 gcttcttcat tacctatcag ttcttccact gttcgtggtc tagagctctc aacccacatc
     1021 atgattaatc ttattaataa tcatataatc agatctggct caacctttta tcgttccgtt
     1081 catattcttc tgcaaaagag caaacatatc acgtcttgtg agttcgtgga accaatattg
     1141 attgtagtgg ctcactgcta agaatagaaa ttccaaaaac ggcttgtagt taa
//
LOCUS       DATLQL010000348         1291 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_619980, whole genome shotgun sequence.
ACCESSION   DATLQL010000348 DATLQL010000000
VERSION     DATLQL010000348.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1291)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1291)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1291
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_619980"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            360..512
                     /locus_tag="VNB68_03615"
     CDS             360..512
                     /locus_tag="VNB68_03615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36468.1"
                     /translation="MTPVISNQLDNAVKFIKIDEGALDVVPEKKEENQEVVVSKNDKI
                     LQVIFT"
     gene            complement(800..1000)
                     /locus_tag="VNB68_03620"
     CDS             complement(800..1000)
                     /locus_tag="VNB68_03620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36469.1"
                     /translation="MKGSNMVILSRLNLRGQDAYDFGLYIPIYEAPWQLNAKGPSVSG
                     FDLTQLMFSGMVVSKPYLLTIP"
BASE COUNT          369 a          255 c          255 g          412 t
ORIGIN      
        1 tttgagtagg tttgttgagt caggcttgta atagttctag caagtatatc gtatccctca
       61 tggaatggaa tagctacagt cgcgtataat tcgtgcttag gtctctcgtt tttaagtttg
      121 tgttctatat cagcataatc attgtgtaat ctcaattgta tctacctcgc tagatacaat
      181 tttgtgatat aggttcaaaa tctataaacc ttgtgtttta tgttactatg gctcgaagag
      241 tcttctctaa ttggtaattc caatcttttt attgacatgt cattcaccaa ttacagctag
      301 aggatatcgt gatatgactc atgattttat ttctgtacgt gcagaaaaag agattaagga
      361 tgactccggt tatttctaat cagctggata atgctgtaaa attcatcaaa atagatgaag
      421 gagctctaga tgtcgttccc gaaaagaaag aagaaaatca agaagtggtt gttagtaaaa
      481 atgataaaat actgcaagtg atttttacat aactaatcta aactttgttt ccattcttgt
      541 ctacacagtt atcataggct tgctcgtcac caagacacac caaatttcat acgcgacctc
      601 catagatttc gaaaaaaggg aacagatgaa taaggacctc catttgctcg tttcacgaat
      661 ccgctttgcc ttccaaacat tgtgagggta gcctccgcta tgctctgagc agaatgacca
      721 aggaggagta attcatctat ctgttctctt ttcgaccggg gattcccttc aggcagtggc
      781 gattcagaca atgattattc tagggtatgg taagtagata aggtttactg accaccatac
      841 cagagaacat taattgggtc agatcgaaac cagacacaga tggacctttg gcgttgagct
      901 gccaaggcgc ctcatatata gggatatata atccaaagtc atacgcatcc tgccctctaa
      961 ggttgagtcg gctcaaaatt accatgttac tacccttcat attctgactg ctaactgggg
     1021 taattgatat gccttaccta gttccttacc agtcaaagat ttgacactag ggcgtctacg
     1081 tagaagtcgt catctaggat cttaacaata gttaccgtcc gatcaatcaa ggaatagatc
     1141 ttcagatttc atctgttctg ctattctaag aggatcccat atcatttttt ctttgtcgta
     1201 gatgaaggtc gagtcatcgt ttgctgcagc cgtggtagta ggtgtgacta ctacttcgtc
     1261 ttcaatcaat ctacttgcag tcattgcagc c
//
LOCUS       DATLQL010000349         2058 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1329703, whole genome shotgun sequence.
ACCESSION   DATLQL010000349 DATLQL010000000
VERSION     DATLQL010000349.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2058)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2058)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2058
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1329703"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(156..710)
                     /locus_tag="VNB68_03625"
     CDS             complement(156..710)
                     /locus_tag="VNB68_03625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36470.1"
                     /translation="MHYSSLAKDTTSSRKIYLIVFYISAVIMAAITMYALYASLIEYL
                     STGKTVIGDVLVTTEFPVKGLSKLVTYLMIVSVLAWYCVTKLGGEKVKDVKPSVKAVL
                     QLIVLVIAVVSLYEFVYNFVVWSSLITVDAMQGVMKLDTINVPYPNPKVPWNLVFATK
                     MSLAAFLISAHGFYIMARKKRPES"
     gene            1117..>2058
                     /locus_tag="VNB68_03630"
     CDS             1117..>2058
                     /locus_tag="VNB68_03630"
                     /inference="COORDINATES: protein motif:HMM:NF013528.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HVD36471.1"
                     /translation="MNDTISTIVCSHESDLDGIFSASIASIKFPEADISFYNYGRSNF
                     EKMFEHIMLNVKKEESTGKIIISDLGINPDVEDLSISAIREFNRMGWKVIWVDHHPWS
                     KQAKSSIAPLATVIHDESGKRCASELMFEYIRLKSKVAKQLSIMAHAMDFMTGAVYIV
                     PISELIQYYRNLSHSEKSLTDLARKAANGVLWDTEMQSSYGRYLSINEKEKQSAWKSL
                     VMRKIAGLDVAFLCISNYIQSSLFSKEVFSRTGADLCLLYGTNGRVSIRRNNNKTSCR
                     IIASFLVEGGGHDYAAGGKLKSIALDTDACLRELEEVV"
BASE COUNT          653 a          374 c          400 g          631 t
ORIGIN      
        1 ctaactaaag attaactcgt aattctttgt tagaagtaat caaaataacc aatattatga
       61 atttaatcat actgtatcag aaacctgaaa tcgattttca tttctcataa ttggaaataa
      121 aagtttgctt aatcaatttt ccctgaaaat aagaattaac tttcaggcct cttttttctg
      181 gccattatat agaaaccatg cgctgaaatt aagaatgctg ccaaagacat ttttgttgca
      241 aaaactaagt tccaaggaac cttcggattt ggatacggca catttatggt atctaatttc
      301 atgacccctt gcattgcatc tacagttatc aaagaactcc acaccacaaa attatagaca
      361 aattcataaa gtgaaaccac ggctataacc agtacgataa gttgaagtac tgcctttaca
      421 gatggcttga catcctttac cttttcccca cctaacttcg taacacaata ccatgctagc
      481 accgaaacaa tcattagata ggtgacaagt ttagacaggc ctttcacggg gaattcggta
      541 gtgaccagca catcacctat cactgttttc ccagtagata gatattctat tagactggca
      601 tataacgcat acattgtaat tgcagccatg atcaccgccg aaatatagaa tactattaag
      661 tagatctttc tagacgatgt agtgtcttta gctaaactcg aatagtgcat gtgatactat
      721 agatcatcaa atattgtcga gatataaaat tatattatca agattgtgtc tttcctcata
      781 aagtttatcc ttttttgccg gaaaattaat agcagatcta ctttcaggat cggccagaat
      841 aaatcctaat agaggtaggt tgcctttgct tcgagtacaa acatctaatt tatttaacct
      901 atattcttta gttgttcttg gtgggcattt ggttatttcg ttcttcttgc gatcaaatca
      961 attcataacg ccaaatctgg gactgaaatt catcgcgaca agggaccggt ctcttgttag
     1021 acgagctaac gttaggacat ctatgcgagt gatgatacta cctctggctt ttatgtaaca
     1081 agctacatat ttctgctctt ttctaagcct agaaaggtga atgacacaat aagtaccata
     1141 gtttgttctc acgaatcaga ccttgatgga attttctcgg cttcaattgc gtcaatcaag
     1201 tttccggaag cagatatttc attttataat tatggtcgta gcaatttcga gaagatgttt
     1261 gaacacataa tgctcaatgt aaaaaaggaa gaatcaactg ggaagatcat tatttctgat
     1321 ttaggtatca atcctgacgt agaagacctt tccataagcg caattcgcga gtttaatcga
     1381 atgggatgga aagtcatatg ggtagaccat catccttggt cgaagcaggc taagagctca
     1441 atagctcctc tggcgacagt gattcatgat gagtcgggaa aaagatgcgc atctgagtta
     1501 atgtttgaat acattcgtct taagagtaaa gttgcaaaac agctatccat catggcacat
     1561 gctatggatt ttatgactgg agccgtatac attgtgccta tatcagagtt aatccagtat
     1621 tatcggaatc tttcacattc tgagaaaagt cttactgatt tggccagaaa agcagcaaat
     1681 ggcgtattgt gggataccga aatgcagtca tcttatgggc gctatttaag tatcaacgaa
     1741 aaagaaaaac aaagtgcttg gaaatctctt gtgatgcgaa agattgcagg acttgatgtg
     1801 gcgtttctat gcatatccaa ttacatacag agtagccttt tttctaagga agtgtttagc
     1861 agaacaggag ctgatctatg tcttctctat ggtacaaatg gaagggtaag cataaggcgg
     1921 aataataata aaacttcctg cagaatcata gcatcctttt tggtcgaggg gggtggtcat
     1981 gattacgcag ccgggggaaa attaaaaagt attgctttgg atactgatgc atgtttaaga
     2041 gagctcgagg aggtagta
//
LOCUS       DATLQL010000350         2494 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_86441, whole genome shotgun sequence.
ACCESSION   DATLQL010000350 DATLQL010000000
VERSION     DATLQL010000350.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2494)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2494)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2494
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_86441"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1095)
                     /locus_tag="VNB68_03635"
     CDS             complement(<1..1095)
                     /locus_tag="VNB68_03635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit D"
                     /protein_id="HVD36472.1"
                     /translation="MENDQKFDETIRRGLEIVKEAEEDRLMTLSVGPQHPGSGHFRFT
                     IKVDGDYIVYCDPDPGYVHRGEEKMCEYRNFIQNIPHLERPVIHDSTNITYSYSLAVE
                     ELANIQVPLRGQYIRALASELNRQVYTLYWLGIYGIFLGHSTMFMWPLGDRELFIDLL
                     EALTGARVTHAFNIPGGVRNDIPEGFKERCLRQVAYFEKRLAEYEDIFYNNPLFRQRT
                     EGVGILTKEDAIKLGVTGSVLRASGIPFDVRKAEPYDVYNEIDFKIQYMKTGDSYARS
                     MVPFLDMKESCHIIRELLDKMPKSGEVRAKLQPNPKGPAGESYKRVESGRGALGYYIV
                     SDGTPKPYRVKLSVGSFRNMLALPFLLIGSK"
     gene            complement(1106..1678)
                     /locus_tag="VNB68_03640"
     CDS             complement(1106..1678)
                     /locus_tag="VNB68_03640"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HVD36473.1"
                     /translation="MGSDQSKTQNGSEQKKSSSDSTQTSISKKTESVTPEFEGSLINQ
                     LVTRFGDKLVQVIYVRPGRTKILVPPNEIVQVASFIKDSLGFDHAESVSGTDYPNDNQ
                     IEVIYHLSSYSDDKLSSQILALSTRVDRNESRMPTLINIFKSAEYHERETFEMLGVYF
                     EGHPRNERFLLPEEWADIPPLRKEFRIKGR"
     gene            complement(1680..2195)
                     /gene="nuoB"
                     /locus_tag="VNB68_03645"
     CDS             complement(1680..2195)
                     /gene="nuoB"
                     /locus_tag="VNB68_03645"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoB"
                     /protein_id="HVD36474.1"
                     /translation="MMKDLVNPTNFNVLVGKLGDVLIRALDLPLGYAINWGRIWSLWP
                     VHLETACCSVEFGAASGPRYDVERFGIIEAFGSLRQCDLVVVQGTVTRKMAPRLRMVY
                     DQMPDPKYVIAMGACAITGGLYIDSYNVLPGIDGIIPVDVYVPGCPPRPETLIQGCML
                     LQEKIKRSKIR"
     gene            complement(2260..>2494)
                     /locus_tag="VNB68_03650"
     CDS             complement(2260..>2494)
                     /locus_tag="VNB68_03650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit A"
                     /protein_id="HVD36475.1"
                     /translation="ECGQMPSGEGRTHFMMQYYSYILMFVVFDVMSIFLYAWGVSLFS
                     ISRSATLPIIGFLAIMFSAMGYALYLSGRKGIW"
BASE COUNT          716 a          564 c          426 g          788 t
ORIGIN      
        1 ttttgatcct attaagagga atggaagcgc tagcatattc ctaaatgagc ctactgataa
       61 cttgacccta taaggctttg gtgttccgtc acttactata taatatccta aagctcccct
      121 tcctgattct actcttttat aagattctcc ggctggcccc ttcggatttg gttgcagctt
      181 tgctctcact tcacctgatt tgggcatctt atctagtaac tctctaataa tgtggcatga
      241 ttctttcata tcaagaaacg gaaccatgga tcttgcataa gaatcaccag tcttcatata
      301 ctgtatcttg aaatctattt cattatagac gtcatatggt tctgcctttc taacatcaaa
      361 aggaattccc gacgctctca gaacagagcc tgtaacccct aactttatgg catcttcctt
      421 tgtcagaatt ccaacaccct ccgttctctg tctgaataat ggattattgt aaaatatgtc
      481 ctcatattcg gcaagtcttt tttcaaaata tgcaacttgt cttaagcatc tttctttaaa
      541 tccttcgggg atatcattgc gaacccctcc cggaatgtta aatgcatggg taaccctcgc
      601 gccagtaagt gcttccaaga ggtcaataaa gagctctctg tctccaagtg gccacataaa
      661 catagtagaa tgtccgagga atatcccgta tattcccaac cagtaaaggg tatacacctg
      721 cctattaagt tccgatgcca aagcacgaat atactgcccc ctgaggggaa cttggatatt
      781 ggcaagttcc tcaactgcta aactatagga gtatgtaata tttgttgagt cgtgaataac
      841 tggtcgctca aggtgcggaa tattttggat aaagtttcgg tattcgcaca ttttttcttc
      901 gcccctatgt acgtagccag gatctgggtc acaatataca atataatctc catctacctt
      961 tatagtaaat ctaaagtgtc ctgagcctgg atgttgaggc ccaacactaa gagtcatcag
     1021 tctatcttct tctgcctctt ttacaatttc aagccccctc ctaatagttt catcaaattt
     1081 ctggtcattt tccacctttt ttcacttatc tccctttaat tctaaactcc tttcttaacg
     1141 gaggaatatc tgcccactct tctggcaaca aaaatctttc gtttcgggga tgtccttcaa
     1201 aatagacgcc aagcatctca aaagtttccc tttcgtgata ttccgcactc ttaaaaatat
     1261 taattaatgt tggcatcctt gactcatttc tgtctaccct tgtagataaa gctaaaatct
     1321 gtgaggagag tttatcatct gaataagagc tcaagtgata tattacttca atctgattat
     1381 catttggata gtccgttcct gaaactgatt ctgcgtgatc aaaccctaga ctgtctttaa
     1441 taaaggaagc tacttgaacg atctcatttg ggggaacaag gatctttgtt ctccctggac
     1501 gtacatagat tacctgtact agtttatcac caaatcttgt aactagttga ttgataagac
     1561 tgccttcaaa ttctggagtt acgctctcag ttttttttga tattgaagtc tgtgttgaat
     1621 cagagctgga ctttttttgc tcagaaccat tttgggtttt agattgatcc gagcccattt
     1681 tatctaatct tcgacctttt tattttttct tgcagtagca tacagccttg aattagggtc
     1741 tcgggtcttg gtggacagcc aggtacatat acgtcaactg ggataatacc atcaatcccg
     1801 ggaagtacat tataagaatc gatatacagt cctcctgtaa ttgcacaggc acccattgca
     1861 atgacatatt ttggatctgg catctgatca taaaccatcc ttagcctagg agccatcttt
     1921 ctggttacgg taccttgaac aacaaccaaa tcgcactgtc ttaatgaacc aaaagcctca
     1981 attattccaa atctttcaac atcatatctt ggaccagaag ctgctccaaa ctccacgcta
     2041 caacatgcag tttccagatg gactggccaa agtgaccaga ttcttcccca atttattgca
     2101 taacctagag gaagatctaa tgctcttata agaacgtccc caagttttcc aaccaggaca
     2161 ttaaaattag tgggattaac cagatctttc atcattagtg aatttcaacc tccaatttaa
     2221 attctttaaa tttaatcctt tgatgaataa actcaaaatc taccaaatgc ctttcctccc
     2281 agaaagataa agtgcgtaac ccatggcaga aaacattata gcaagaaatc caattatggg
     2341 aagtgttgct gaacgtgata ttgaaaagag tgatacgccc catgcataca agaaaataga
     2401 catgacatca aaaacgacga acatgagaat ataagagtag tattgcatca taaagtgggt
     2461 tctcccttca ccggatggca tctgaccgca ttcc
//
LOCUS       DATLQL010000351         3441 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_444112, whole genome shotgun sequence.
ACCESSION   DATLQL010000351 DATLQL010000000
VERSION     DATLQL010000351.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3441)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3441)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3441
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_444112"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            681..1826
                     /locus_tag="VNB68_03655"
     CDS             681..1826
                     /locus_tag="VNB68_03655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit beta"
                     /protein_id="HVD36476.1"
                     /translation="MTAIASKSYLMRLLEYQGKKLFSEYGIPVPVSQLARDEQGALEA
                     SKKIGFPLVLKSQLTVGGRGKAGAIVKCSNESEFISKFNELLHKDVKGELPQGILVEG
                     MINIAKELYVSLFLNRGKRCYSLISSNEGGVNIESVESKIIIDLRHTGLSREVVQDLA
                     RRLGLEVKPATLFVDFILKLSRLVKDKEAELAEINPLAILSDGSCMALDSKVIIDDNS
                     IFRHPELKKFQQVSELQARAEESGFSFVELDGNIAIIGNGAGLVMSTLDLVNDNAGKP
                     GAFLDFGGRATTETIYQALEVISKIPRIKAILVNLFGGIVRTDLVAQAILNAYSNGII
                     GVPIYARISGAESVKAKDMLTGSRAKIYDSVEEAVSSLIRYVRRGSS"
     gene            1827..2744
                     /gene="sucD"
                     /locus_tag="VNB68_03660"
     CDS             1827..2744
                     /gene="sucD"
                     /locus_tag="VNB68_03660"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HVD36477.1"
                     /translation="MTGEFDIFELLIGHPGERDYEKKPVIIQGITGNFGSAHTRLMKA
                     YGTNVVAGITPGKGGQDFEGIPVYNSVQEACKNVDAKISGIFVPAPFFLNAAKEALDN
                     GIKLLIAIPEHVPVRDAIDAVEYARSKNARIIGPNTPGIIVPKITKIGIMPHQPFKPG
                     TTAVFSRSGTLMYEVSFHLSKAGIGQRIALGIGGDPINGTNLIEAFELIRYRDDVESV
                     VIVGEIGGDAEEQLAEYIMKNNFTKPVVGYIAGRSAPKEKTMGHAGAIIYGNYGSAES
                     KISSFTNANVPVAKRPAEIPELLLRKMKK"
     gene            complement(2797..3147)
                     /locus_tag="VNB68_03665"
     CDS             complement(2797..3147)
                     /locus_tag="VNB68_03665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36478.1"
                     /translation="MSEKNTQIMVPKFDNDLILGVKNLERKELESRIKEITKNIGFAI
                     ILAEKIVSKTEEEIVDSALGISVGWLLGSYSEGYFERNGHHLDKDEMTDTIYVALNNL
                     TVIKKSIQKELKLR"
BASE COUNT         1074 a          623 c          712 g         1032 t
ORIGIN      
        1 aatagagttg atttgtataa acatacaccc cttttgctca cggcattcat ctttgttttg
       61 ctttgttctt gacatcattt cctaaccacg gttcctgctt ttttagtcga gatgcccatg
      121 ctcataattg cgaaattgtt aataacccat cattttcctg tatcgataac ggatggaaaa
      181 cttttatata tatttttatt atatgcaaat cagctttaag tagagaccct tacggaatca
      241 caaaattttg atagccccaa tattaattaa ttcttggctt aggccgtaca tcatttgtgg
      301 ttttggaaaa gaagtcaacc atatcattac tgcaggaacc gaagcacaca cgattatggt
      361 gaggattatc aaccaaactg cagtcatctt ttcggccata ttctacatcg attcctctag
      421 atatataaat ttttgaaatt tctctatgac ttgtttgaca aaattgattt cgataactat
      481 ttccattggt actgttttgt ttttctagaa atctaatcaa ccagtaatcg ttgcatccaa
      541 ctaaagtcag ttctcgccac ccacgatcaa aatacaaaga tactaaagac gaccaaaagg
      601 tctcgattat aagttgctaa tacaatagaa taattagtgt ttctatatca ctatgtgcat
      661 caatgaaaat aagaatataa gtgaccgcca tcgcttcaaa atcttaccta atgagattac
      721 ttgaatatca agggaagaaa ttattttcag aatatggtat acctgtcccc gtttctcagc
      781 tggcgcggga tgaacaagga gcattagagg catcaaagaa aataggcttt cccctagtgc
      841 ttaaatcgca actcacagtt ggaggacgtg gcaaggcggg agccatcgta aagtgttcta
      901 atgaatcaga atttatttcg aagtttaacg aactgttgca caaagatgta aaaggtgagt
      961 tacctcaagg aattttggta gagggaatga taaatattgc gaaagaactc tacgtgtcac
     1021 tatttctcaa tagaggaaag agatgttatt cgttgattag ttccaacgag ggtggagtaa
     1081 atattgaatc tgtcgaaagt aaaatcatta ttgatttgcg ccacacagga ttatcaagag
     1141 aggtggttca agacctcgcc aggaggttag gattagaagt aaaacccgcg accttgtttg
     1201 tagactttat tctgaaactc tctcgcctag taaaagacaa ggaggctgaa cttgctgaaa
     1261 ttaacccttt ggcaattctt tctgatggat catgtatggc acttgattct aaggtaataa
     1321 tagatgataa tagtatcttt aggcatccag agctgaaaaa atttcagcaa gtatctgagc
     1381 ttcaggcaag agctgaggag agcggttttt cgttcgttga attggatgga aacatcgcta
     1441 tcatcggaaa tggtgctggt ttggtaatgt ctactttaga tttagtcaac gacaatgctg
     1501 gaaaacccgg ggcttttttg gattttggtg ggagagctac cacagagacg atatatcaag
     1561 cattagaggt cattagtaag atcccgagaa taaaggctat cttagtaaat ttatttggag
     1621 gcatcgttag aacagattta gtcgcccagg ccatactcaa tgcttacagt aatgggatta
     1681 taggcgttcc aatatacgca cgtatatccg gagctgaatc agtaaaggcg aaggacatgc
     1741 taaccggtag ccgggccaaa atttatgata gcgtagaaga ggcagtatcg tctctcattc
     1801 gctatgtaag gcggggctct tcctgaatga ctggggaatt cgacattttt gaactactaa
     1861 tcggtcatcc aggagagcgg gattatgaga aaaaacccgt aataattcaa ggaattacag
     1921 gaaactttgg atccgctcat actcgattga tgaaggcata cggaactaat gttgttgcag
     1981 gaataacacc tggaaaagga ggacaagatt tcgaagggat tcccgtctat aactctgtac
     2041 aggaagcctg caagaatgtg gatgcaaaaa tatcgggaat ttttgttcca gctccgttct
     2101 ttttgaatgc cgcaaaggag gcactcgata acggaataaa attgttgata gctattccag
     2161 aacatgtgcc tgtgcgggac gcaattgatg ccgtggaata tgcaagatct aagaatgcca
     2221 gaataattgg gccaaacaca ccaggaatca tagtccctaa aataacgaaa attggaataa
     2281 tgccacatca gccctttaaa cctgggacaa ctgctgtttt ttcaaggagc gggactttga
     2341 tgtatgaagt atcttttcac ttgagtaaag ctgggatagg gcagagaatt gcccttggca
     2401 taggaggcga tcctataaac ggaacgaact tgatagaagc atttgaattg ataagatatc
     2461 gagatgatgt cgaatcagtt gttatagttg gagagatagg cggagacgca gaagagcagc
     2521 ttgcagaata cataatgaaa aacaacttca caaaacctgt tgttggctat atagcaggac
     2581 gatctgcgcc aaaagaaaaa acaatgggtc acgcgggggc aataatttat ggtaattacg
     2641 gttcggcgga gtcaaaaata tcaagtttta ctaacgcaaa tgttcctgta gcaaaaaggc
     2701 cggctgaaat acctgaactg ttgttaagaa aaatgaaaaa ataaacttaa tacgattttt
     2761 ctaaagccta caaggaattg agtactaggc cataatttat ctgagtttta gttccttttg
     2821 aattgatttt tttattaccg tcagattatt caaagcaacg taaatggtat ctgtcatttc
     2881 atctttgtct aagtggtggc catttctttc gaagtaaccc tcactataac tgccaagtaa
     2941 ccaaccaaca gaaattccta atgcagaatc tactatttcc tcctcagttt tcgaaacaat
     3001 tttttctgcg agtattattg caaacccaat attctttgtt atttctttaa ttcgtgattc
     3061 caattccttc ctttctagat ttttgacacc caatatgaga tcattatcaa atttaggtac
     3121 cataatttgc gtgtttttct cagacaattg tttccttatt gacatttcgg gttggaatag
     3181 catttcaatc gaacaatcca tgaactcatc tggaaactaa tttgatacat tactctagat
     3241 tctcttaccc ggttaccttt agctaagatt atgtttgatt cacgctagtg agatttgagg
     3301 aactaactga tggtcaatgg aatctcctag taccgtcaat ccctcttcct gcttactggt
     3361 agacctagag ctgatgacag gagttgcatc aaatgcatgt tgtatgtact tatgagtggt
     3421 tgtaggtgga tggacatgcc t
//
LOCUS       DATLQL010000352         2950 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1684957, whole genome shotgun sequence.
ACCESSION   DATLQL010000352 DATLQL010000000
VERSION     DATLQL010000352.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2950)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2950)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2950
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1684957"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1915
                     /locus_tag="VNB68_03670"
     CDS             <1..1915
                     /locus_tag="VNB68_03670"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF003218.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA topoisomerase VI subunit B"
                     /protein_id="HVD36479.1"
                     /translation="QVNSNCKSKIRYDKKAESEFFVDNSALAGFTGERILYMAVRELL
                     ENALDSCESSHILPVIHLQLRILDPDNDMWIISCKDNGVGIPSEKVPVAVCSFLTSGK
                     YVEKQQRGLFGVGLKMIAAFSTKDTDHPLRVWSKSHDEPESYFDLRTDIGTNKPIVLS
                     RRIVNKTECEIEGESGFKVEAVLRARLSPVTKNKIHDYISHTSVVNPYAVLNFESDEG
                     VVAFERRTSVMPNPAKEVLPHPADMDLKTLRKAIVNHAYQKTTLHGVLCNSFQKMSAE
                     KAREIVVKAGLELKLADKYNEHELIRVVNVCKHTKFQSPNTDHLSPIGEKILTAGMTS
                     EYTVVLRKDIHEDSGPHTQLSAKILKPSLTAYSSRTCVINNRPTIVECGIAYGGDLGS
                     FKLYRFANKIPLLYDEGSDVAREVISEVEINKMGISKKEVKEQFRNAETRSDRAIEYL
                     PIHIFFHICSTKIPYKTAGKESIAAEGDLKRYMKSCLSDLYRKVSAQIRRELKIKENE
                     NKLRLYKFYIPFIVNAISDSIRIDVKKLTSAFNGLAVKYIGNELAVTTDPGAIANPAE
                     IEEGLSPNGKVTGGIKSSKKAVYPDKRTVAKTANRSGRHETKEKHESDFENDKKSTQI
                     TLDAFRKSKLRKV"
     gene            1920..>2950
                     /locus_tag="VNB68_03675"
     CDS             1920..>2950
                     /locus_tag="VNB68_03675"
                     /inference="COORDINATES: protein motif:HMM:NF044723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36480.1"
                     /translation="MPTRDKRHQEVITRIKAIMKNISDDVLLRQTMPAVELPKIGYDN
                     TIWSDQKRMLTIGNKTVQVGPHSAKKIPTFSQYLVMANAVRRLLDEEMESTIRGMYYA
                     TLSTVGDEKNKQKFWNSQEDSDDAIKAIELMTNVPREEFSVTSKPKGMISGPINLLVG
                     GDLIDCNLGSRATSQLIPTNIRDLEIVDVKADFVMVVEKDTVLNNIRKSGFIKKYNAI
                     LMTGSGEPDRATRMMVKALNERWKMPVVIFADADPWGLGIALRYKIGSESLSYDSDRL
                     VTPDAKVLGMMFSDIYEYNIPEVARLAATDEDINRANDMKKKPWLQDRQWKKELNLFL
                     EHKEKCELDA"
BASE COUNT         1007 a          524 c          648 g          771 t
ORIGIN      
        1 tcaagtaaat tcaaactgca agagcaagat ccgttatgac aagaaagccg aatctgagtt
       61 tttcgttgac aattcagctc ttgcaggctt cactggtgag cgaattttat acatggccgt
      121 aagagaactt ctagaaaacg ctttagattc atgcgagagt agccacatcc tcccggttat
      181 tcatttacaa ctaagaattc tagatccaga caacgacatg tggattattt cttgtaagga
      241 taacggagtg ggtataccat ctgagaaagt tcctgttgcg gtctgttcat tccttacgtc
      301 aggcaaatat gtggaaaaac agcagcgtgg tctttttggt gttggtctca aaatgattgc
      361 cgctttttct acaaaagata cagatcatcc acttcgagta tggtccaaat cacatgatga
      421 acctgagtct tacttcgacc ttcgaacaga cataggaact aacaaaccaa tagtactttc
      481 aagaaggatt gttaacaaaa ccgagtgtga aatagaggga gaatctggtt ttaaagtaga
      541 agctgtgtta cgggccagat tatctccggt tactaagaat aagattcatg attacataag
      601 tcacacaagc gtcgttaatc cttacgcagt tcttaatttt gaatcagacg aaggagtagt
      661 tgctttcgaa agaaggactt cggtgatgcc caacccggct aaggaagtgc ttcctcatcc
      721 tgcggacatg gatctgaaga ctttgagaaa ggctattgtc aaccatgcat atcaaaaaac
      781 tacacttcat ggagtacttt gcaattcatt tcaaaagatg tctgctgaaa aagcaagaga
      841 aattgtcgtt aaagctggtt tggaattaaa attggctgat aagtataatg aacatgaatt
      901 aattagagtt gtgaacgtgt gtaagcatac aaaatttcaa tcaccaaata ccgatcattt
      961 gagtcctata ggcgagaaaa ttctgactgc aggtatgacc tccgaataca ctgttgtcct
     1021 aagaaaagat attcatgaag attcaggtcc ccacacacaa ctctctgcta aaatattgaa
     1081 gccttccttg actgcatatt cgtcaaggac ctgtgtcata aataaccgcc ctacaatagt
     1141 ggagtgcggt attgcatatg gaggagactt gggatctttc aaattatata ggttcgctaa
     1201 caaaatacct ctcctttatg atgagggctc tgacgtcgcg cgtgaggtaa tctctgaggt
     1261 agaaataaac aagatgggca tttccaaaaa agaagtgaaa gagcaatttc gaaatgcaga
     1321 gactagatcg gatcgagcga ttgaatattt gcccatccac atattctttc acatttgttc
     1381 caccaagatc ccttataaaa cggcaggaaa ggagagcatt gctgcagaag gtgatttgaa
     1441 gcgttatatg aagtcatgtt tatcggacct ttatagaaaa gtaagtgcac aaataaggag
     1501 ggaattgaag attaaagaaa atgagaataa actgagactt tataagttct acattccatt
     1561 catagtaaat gcaatatccg attctatcag aatcgatgta aaaaaactga catccgcttt
     1621 caacgggctt gctgtaaaat acataggcaa cgaattggct gtaacgaccg atccaggtgc
     1681 tattgcaaac cctgctgaaa tagaagaggg gttatctccc aacggaaagg ttaccggagg
     1741 cattaaatca tcaaaaaagg cagtttatcc tgataaacga actgtggcta agaccgccaa
     1801 tcggagcggt aggcatgaga cgaaggagaa gcatgaatca gacttcgaga atgataaaaa
     1861 aagtactcag ataactttag acgcattcag gaaatctaag ctaagaaaag tgtagccaca
     1921 tgcccacaag agataagaga catcaagagg taattactag aataaaggcg ataatgaaaa
     1981 acatttccga tgacgtactt ttgaggcaaa ctatgcctgc tgttgagctg cccaaaatag
     2041 gttacgataa tactatctgg tctgaccaaa aaaggatgct tactataggt aacaaaactg
     2101 ttcaggtggg accacatagt gcaaaaaaaa ttccgacttt ttcccagtat cttgtaatgg
     2161 ccaatgccgt aaggagacta ttggatgagg aaatggaaag caccatacga ggcatgtatt
     2221 atgcgacact gagtaccgtg ggagatgaaa aaaataagca gaaattctgg aatagtcaag
     2281 aagattccga tgatgctatc aaagctatag agcttatgac aaatgttccg cgagaagaat
     2341 tttctgttac atctaagccc aagggtatga tctctggacc tataaatctc ttagttggag
     2401 gcgacttaat tgattgcaat ctggggagca gagcaacttc acaactgata ccaacaaaca
     2461 ttcgggacct agagatagtt gatgttaaag ctgattttgt gatggtggta gaaaaagata
     2521 ctgtcctgaa taacataaga aaatctggat tcatcaagaa atataatgca attttaatga
     2581 caggttcagg agaaccagat agagcgacta ggatgatggt caaggcattg aatgaaagat
     2641 ggaaaatgcc agttgtcata tttgctgatg cggatccttg gggacttggt atagcacttc
     2701 gctacaaaat tggaagtgaa tcgctgagtt atgatagtga tagacttgtt actcctgatg
     2761 ccaaagttct tggaatgatg ttttctgata tctacgaata caatatacca gaagtagcga
     2821 ggctagctgc cactgatgaa gatattaata gagctaatga catgaaaaag aaaccatggc
     2881 ttcaggatcg gcaatggaag aaggagttaa acttattcct ggaacacaaa gaaaaatgtg
     2941 aattagacgc
//
LOCUS       DATLQL010000353         1065 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_621175, whole genome shotgun sequence.
ACCESSION   DATLQL010000353 DATLQL010000000
VERSION     DATLQL010000353.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1065)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1065)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1065
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_621175"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..133)
                     /gene="spt4"
                     /locus_tag="VNB68_03680"
     CDS             complement(<1..133)
                     /gene="spt4"
                     /locus_tag="VNB68_03680"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: protein motif:HMM:NF017867.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003711 - transcription elongation factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor subunit Spt4"
                     /protein_id="HVD36481.1"
                     /translation="MPREVACKKCKAVTVGKVCPICKSSELTPDWYGIILIFDPNKSR
                     "
     gene            complement(133..735)
                     /locus_tag="VNB68_03685"
     CDS             complement(133..735)
                     /locus_tag="VNB68_03685"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase"
                     /protein_id="HVD36482.1"
                     /translation="MFAIIHMSDVVRIPPNKLTNSLKDTAIGILKEKYESLINAEIGY
                     VIMIIDAFANSTGKLIAGDGATYHKVSFRALTYFPVLQEIVEGEIVEITDFGAFVRIG
                     PTDALLHLSQITDDYLKSDVKQGVIVANQTARSLKMGSRLRSRVTAVSLGKGASMGKI
                     GITCRQPFLGALEWIEQEIKKAREPQPTVPAKEKKGVNTK"
     gene            complement(815..>1065)
                     /locus_tag="VNB68_03690"
     CDS             complement(815..>1065)
                     /locus_tag="VNB68_03690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36483.1"
                     /translation="NEQSVLDYIEKIICRYGHLGTYDEILQSRGRTIVIRHRLGRKGS
                     IFFQAFFFSAIKTMLNVDAKFEITGSSLKFDILDKSKT"
BASE COUNT          293 a          237 c          183 g          352 t
ORIGIN      
        1 ttctggactt attaggatca aatattagga taatcccata ccagtctgga gttaattccg
       61 aagatttgca aatcggacag acctttccta cagtaacggc cttacacttc ttacatgcta
      121 cttccctagg cattacttgg tgttcactcc tttcttttcc ttggcaggaa ccgttggctg
      181 aggctctctg gccttcttta tttcctgttc gatccactcc agagctccta aaaatggttg
      241 tctgcaagtt ataccaattt tgcccataga ggctcccttt cccaggctga ccgcagttac
      301 tcgtgaacgg agtcgggaac ccattttcaa cgacctagca gtttgattgg caacaatcac
      361 tccctgtttg acatcacttt tgagataatc atcggtgatt tgcgataggt gtagtagtgc
      421 atcagtaggt ccaattctga caaaggcccc aaaatcagtt atctccacta tttcgccttc
      481 aactatttct tgtaataccg gaaaatacgt caacgcccta aagctaacct tatggtatgt
      541 tgccccatct cctgcgataa gtttacctgt ggaattggcg aaagcatcta taatcattat
      601 tacgtatcct atttcggcat taatcaggct ttcatatttt tctttcaaga tcccaatcgc
      661 agtatccttc agagaatttg taagtttatt aggaggaatc ctaacaacat cagacatgtg
      721 tatgattgca aacattcttt attgacaatc ttggatatct agttcaattt atgaaccttt
      781 tgttaattca aggacaaatt attcctgtgc aatactaagt tttggatttg tccaaaatat
      841 cgaactttaa agatgatcct gttatttcga atttggcatc gacatttaac atcgtcttaa
      901 ttgccgagaa aaaaaatgct tgaaaaaaaa tcgaaccttt tcttcccaga cgatgtctta
      961 taacaatggt tctacccctt gactgtaata tctcgtcgta tgtgccgagg tggccatatc
     1021 tacaaataat tttttctatg taatcaagca cagactgctc gttaa
//
LOCUS       DATLQL010000354         1605 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_974426, whole genome shotgun sequence.
ACCESSION   DATLQL010000354 DATLQL010000000
VERSION     DATLQL010000354.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1605)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1605)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1605
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_974426"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..335)
                     /locus_tag="VNB68_03695"
     CDS             complement(<1..335)
                     /locus_tag="VNB68_03695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HVD36484.1"
                     /translation="MDGETDRHSDKQIKAIYDLKNIAIVGMSKNPEKPSYFVPRYLIE
                     HGYTVIPVNPTASTILERRSFQKVSDIEDKVDVVDVFRKSEDVYPVVQDTIRKAGIRV
                     IWLQEGIHN"
     gene            936..>1605
                     /locus_tag="VNB68_03700"
     CDS             936..>1605
                     /locus_tag="VNB68_03700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TFIIB-type zinc ribbon-containing protein"
                     /protein_id="HVD36485.1"
                     /translation="MVTDNSSGEMFCGNCGFVITERIEETGPEWRAFSKEEHEDRSRA
                     GIPTSLAMHDMGLATIIGPIDKDASGKPLSASMKSTIERLRTWDSRSQVHEPVDRNFR
                     QAFSELDRLKDKLAVGDAVIEKAAYVYRKALEKGLVRGRSISALVAAALYAACRDTET
                     PRTLKDIANASNIKKKDVARCYRLLIRELDLKMPVVDPVKCVARIASKAGLSEKTKRK
                     ALEIL"
BASE COUNT          533 a          277 c          337 g          458 t
ORIGIN      
        1 atgttatgga taccctcctg cagccatatt acccgaatcc ccgccttccg tatggtatct
       61 tgtactactg gataaacatc ttctgatttt cggaatacat ctacaacatc gactttatcc
      121 tctatgtctg aaactttttg aaagcttctc ctttccagaa ttgttgatgc agttggattg
      181 acgggaatta ctgtgtaacc gtgttcaata agatatcttg gaacaaaata agacggcttt
      241 tctgggttct ttgacattcc aacgattgca atattcttga ggtcatagat ggcctttatc
      301 tgtttgtcgg agtgtctgtc cgtttctcca tccatagagc aatctacgca tacaaccaat
      361 aatagtgtac tgaggcacat ttcaagtaaa tatctaatcg ccgttgcaag tatcctaatc
      421 acatatggta atggtcagca tataatacaa caatagattc tcttcttatg taaagcgagt
      481 acaaaaatat gcgcccagac ttttcagtcc ctaatacata tcattagtta gtatttatat
      541 tgaattacac catggcaaat tgtgccgaag ataaacaaaa aaacacatgc atacagtgct
      601 caaaggtatg agagcaaaaa ggtagaaaaa gcaaggcgac gcaaacgaaa tgttcccaga
      661 gtgtgatttt gtatttgaat tggttgttat ggcgaacgat tctgtgaaat tcttaaaata
      721 tatattaaag tagaaaattt tataatatta acctgccatt ctataatatt ttgcagacaa
      781 atatcagtag ttaaaaaact tttaggacaa tacctatata ttagaataaa ctatatatat
      841 tagtagccca atgtttggaa tttttatggt gaataaggct ggttaaagac atttctttat
      901 tcacggatcg ttgtcctcgc tgtggaaaag gaccaatggt aacagataac tctagtggag
      961 aaatgttttg tggcaattgc ggttttgtca taactgagag aattgaagaa acagggcctg
     1021 aatggagagc attttcaaaa gaagaacacg aggacaggag tagagcaggc attccaacgt
     1081 ccctcgctat gcacgacatg ggtttggcta caataatagg acccatcgat aaagacgcct
     1141 caggtaagcc gttatcagcc tcaatgaaaa gtacaataga acgtttgagg acttgggata
     1201 gtagaagcca ggttcatgaa ccagttgaca ggaattttag acaggcattc agcgagctgg
     1261 atagactaaa ggataaacta gccgtcggag atgctgttat tgagaaagca gcttatgttt
     1321 ataggaaggc attagaaaag ggccttgtaa gaggaagatc catatcggcg ctagtggcag
     1381 ctgcgttata tgcagcttgt agagataccg aaactccaag aacattgaaa gacattgcaa
     1441 atgcaagtaa tatcaagaag aaggatgtgg caagatgtta tcggcttctt ataagagaac
     1501 ttgatctgaa gatgccagta gtcgatcctg taaaatgtgt tgcaagaata gcaagtaaag
     1561 ctggtttatc ggaaaaaacc aagagaaagg ctcttgaaat tctaa
//
LOCUS       DATLQL010000355         2324 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_266891, whole genome shotgun sequence.
ACCESSION   DATLQL010000355 DATLQL010000000
VERSION     DATLQL010000355.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2324)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2324)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2324
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_266891"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..200
                     /locus_tag="VNB68_03705"
     CDS             <1..200
                     /locus_tag="VNB68_03705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36486.1"
                     /translation="AIMWHIFLEILKTSRASHCFRFQMICCHWSRNLIRWQEAVNDSI
                     NTPIPSFSCEYNYNKNNKDLW"
     gene            complement(192..1130)
                     /locus_tag="VNB68_03710"
     CDS             complement(192..1130)
                     /locus_tag="VNB68_03710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HVD36487.1"
                     /translation="MIPVNQDLIVNAVEKVSKSVVNIANVRTVHDQLFRVFPVEGVGS
                     GVIINERCHVLTNNHVVDEAQRLKITLADGRMFNGKVIGTDEMTDLAVVRLDSTETLP
                     FAELGNSDELKIGQIVIAIGNPFGLTGGPTVTAGIVSSLNRKIQFEKGALELIQTDAA
                     INPGNSGGPLVNTKGEVIAINTAKMPYAHGIGFAVPTNIAKTVMTELIQNGRVINRPW
                     IGISYVKITRQLAQDYRLPTTEGVLIAQVESHSPADDAGLRKGDIIEAVDGKRIDDTT
                     EISLNVRKKTVNDSLTMTINRYGRRFEVPIQLQALP"
     gene            complement(1177..2148)
                     /locus_tag="VNB68_03715"
     CDS             complement(1177..2148)
                     /locus_tag="VNB68_03715"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HVD36488.1"
                     /translation="MGEKNIPDNKTSTKSALVSLSEEIENVADKVSQSVVSVRSRTRG
                     NGSGVVWTSDGLIVTCSHIVRKLDELEVSLSNGKSFPAKVIGNDPYSDIALLKIQANG
                     KNDSISLTPIEIGDSENLKAGQFVLALANPYGEYPSITEGIITSERSSLGGSQWGAIT
                     DNIVITDTRLNPGYSGGPLVDVEGKMIGLNAAYVSSRGIAIRAGKVRNITDQLANDGA
                     IKIAYLGIVTDEISLPSEVGAQLEPSQEEGLILLSVEKDTAAKKAGLLMGDIIVRLDD
                     QPITNIHDLRRQLLKQDVIGKSVKLAIIRGEKKIDLSITPQEASRSP"
BASE COUNT          590 a          518 c          390 g          826 t
ORIGIN      
        1 ctgctataat gtggcacatc ttccttgaaa tattaaagac ctcccgagct agccattgtt
       61 ttagattcca aatgatatgc tgccattggt ccagaaattt gatacgatgg caagaggcag
      121 tcaatgattc tataaacacg ccaattccca gtttttcatg cgaatacaac tacaataaaa
      181 ataataaaga cttatggtag cgcctgaagc tgtattggaa cttcaaagcg tcttccgtat
      241 ctgttaatag tcatcgttag actgtcattt acggtcttct ttctcacatt tagtgaaatt
      301 tctgtagtat cgtctattct ctttccgtcc actgcttcga ttatatctcc ctttctcaat
      361 cctgcatcat cagctgggct atgtgattct acttgtgcta ttaacacgcc ttctgtggtg
      421 ggtaatctat aatcttgagc taattgtctt gttattttta cgtacgagat tccaatccat
      481 ggtctattga ttactcttcc attctgtatt agctctgtca tcactgtttt agcaatgttg
      541 gttggtactg caaatccaat accgtgtgca tatggcatct ttgctgtgtt aattgctata
      601 acctctccct ttgtatttac aagtggtcca cctgaattac ccggatttat tgctgcatca
      661 gtttgaatta attctagtgc ccctttttca aattggatct ttctgttcaa tgaactaaca
      721 attccagctg ttacggttgg gcctcccgtt aaaccaaatg ggttaccaat tgcaattact
      781 atttgcccta ttttcagctc gtcagaattt cctagttcag caaatggaag tgtttctgta
      841 gaatctaatc gtactacagc caaatcagtc atctcatctg ttcctattac ttttccattg
      901 aacatccttc catcagctag cgtaatcttt aatctctgag cctcatctac aacatgattg
      961 ttggtaagga catggcatct ctcattaatt attacacccg agccaacacc ttcgactgga
     1021 aatacacgga atagttggtc atgtactgtc cttacatttg caatatttac aacacttttg
     1081 cttacctttt caacagcatt aacaattaga tcttgattaa ctggtatcat atcctatctt
     1141 aataggtaac ctcctttctt tgaattgtta ttgctgttaa ggcgatctgg atgcttcttg
     1201 gggagtaatt gatagatcaa tctttttctc accccgtatt atggcaagct ttactgattt
     1261 tccaatgaca tcctgtttta agagttgtct tcttagatca tgtatgttcg ttataggctg
     1321 atcgtctaat cttacgatga tatctcccat caagagtccc gctttctttg cagcagtgtc
     1381 tttttcgact gaaagaagta tgaggccttc ttcttgactt ggctctaatt gtgcacctac
     1441 ctcactagga agagaaattt catctgtgac aataccgagg tatgctatct taattgctcc
     1501 atcattcgca agctggtcgg tgatatttct tactttacct gctctaatcg caataccacg
     1561 agatgagaca tatgctgcgt ttaatcctat catctttcct tctacgtcaa ctaatggacc
     1621 tcctgaatat ccgggattca gacgtgtatc agtgataact atattatcag ttatcgctcc
     1681 ccactgcgat cctccaagtg agcttctttc gcttgtgatt attccctctg taatactggg
     1741 atattctcca tagggattag caagagcgag aacaaactgt cctgctttca gattttcaga
     1801 atcaccaatc tctattggag ttagggaaat gctatcattc ttaccattgg cttgaatttt
     1861 caggagtgcg atatcagaat atggatcatt tcctataacc ttggctggaa aggacttacc
     1921 attgctgaga ctaacttcaa gttcgtctag ttttctgact atatgactgc aagtcactat
     1981 gaggccatct gaagtccaaa caactcctga gccatttcct ctagtccttg aacgtacact
     2041 tactacggat tgtgatacct tatcagctac attttctatt tcctcagata atgatactaa
     2101 tgcgctctta gtactagtct tattatctgg aatatttttt tcgcccatat ttttattgat
     2161 acccctatat actcagatat actatttgtt gagtaggatc ggagcaacct agtcacatgc
     2221 ccatttatat tcaccaacct tgcattattt tttagccgca acaggagtta attccgacta
     2281 cggagttgtt tgtgctacct cttctacatt ttgcctttta tcgc
//
LOCUS       DATLQL010000356         1416 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_801117, whole genome shotgun sequence.
ACCESSION   DATLQL010000356 DATLQL010000000
VERSION     DATLQL010000356.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1416)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1416)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1416
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_801117"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..953)
                     /locus_tag="VNB68_03720"
                     /pseudo
     CDS             complement(1..953)
                     /locus_tag="VNB68_03720"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
     gene            1021..1362
                     /locus_tag="VNB68_03725"
     CDS             1021..1362
                     /locus_tag="VNB68_03725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36489.1"
                     /translation="MILAITSHHLINRSINIIGMSKVDPRSQDNHTGDSHDEGETEIV
                     KLMKLNEVFAFEIQKAGINAEAVPIGSLQLEKEEYYNNDLVRTPRLVTNKGCIKLKGS
                     AIDLIQIIQRN"
BASE COUNT          397 a          292 c          260 g          467 t
ORIGIN      
        1 tcatcttgag aaagaaattc ttcatcgacg atcattttct tagtattcgt ctggactttt
       61 tcagcaattt cttgaatttt ttctaagagt cctttaagtg tgagagatgt ttcttcgact
      121 ttcctgtcct tttgagtagt gctttccctc atcgtctttg atattttcat caatccttcc
      181 ttgattgttt gtgcattttc acccaatagc gataacaaca tcggcgagat tctgtctatc
      241 tcggacgagg taaggcctgg atagccgcct attcttaaaa attccaccgc ggcctttgga
      301 tagaccgttt tatagatcct ttcggaatgc actggtccgg gatttgtggc gacagatctt
      361 attccgtcct gcaccaattc ccaagcaagc gcttctgcga gtctattttt ggccccctgc
      421 gcacttgtgt atggagttct aaacctgtat ggtctttgtt catatcgatt ctcctccgta
      481 aagaaagtag agattgtaat tattttggat ccatttttca tggtttggag acacttcatg
      541 gtagtccaaa aagttcccgt aagatgaatt gcaacgcact ctttgaatta attaaaatct
      601 gagttagtaa aagtttttac tggcccagat actcccgcat tgttgaccaa aatatcgaca
      661 ttgcctgcct cttcctttat cgactgaaac atttcgttta ttgcattctc gtcagataca
      721 tctacaccgg aaaaaattct gacagtgcct tttgagccga ctttggagat tatttgtctg
      781 aggtctgaag ctgttttttc aagaggctca actcttctcc ctagaattat aacactagcc
      841 ccgttttcgg caaacctctt agctattgat tgtccaatcc ctgttccact gccagtaact
      901 actacaactt ttccaccaaa tccaaaggaa tttcttgacg gagttccttc cataattttc
      961 gcacaattcc tgccctatta aatataactt aattatgcgg taggaagtgg agattgggct
     1021 ttgattttag caattacttc acatcattta attaatagaa gtataaatat catcggtatg
     1081 tccaaagtgg atcctcgttc acaagataat catacaggcg attctcatga cgaaggggag
     1141 actgaaattg taaaactgat gaaattaaat gaagtatttg catttgagat tcaaaaagcc
     1201 ggaattaacg cagaggcagt tccgattggt tcactacaac ttgaaaaaga ggaatactat
     1261 aataatgatc tagtaagaac acctcgtctt gttaccaata agggatgtat caaattgaag
     1321 ggctccgcaa tagatctaat acaaatcata caaagaaatt agattttttt cattcttaaa
     1381 gagagatgat ggacctgtaa aatggcaccg gactat
//
LOCUS       DATLQL010000357         1018 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1511255, whole genome shotgun sequence.
ACCESSION   DATLQL010000357 DATLQL010000000
VERSION     DATLQL010000357.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1018)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1018)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1018
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1511255"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            366..>1018
                     /locus_tag="VNB68_03730"
     CDS             366..>1018
                     /locus_tag="VNB68_03730"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004612 - phosphoenolpyruvate
                     carboxykinase (ATP) activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HVD36490.1"
                     /translation="MSEDNNNIPDGVQIQLGQMNFNFGKIHRNLPVATLTELAIQRNE
                     GILSSTGALAVNTGKFTGRSPEDRYIVDDDTTHDLVNWGKVNHPLLPEKFEGIFNRMR
                     QHISGREFFIFDGFVGADQETRLPIRVLTDSVWHSIFATQIFIRPNSRELQSHIPGFT
                     LLAVNDFSAIPEIDGTRSGTFIIINFTKKMILIGSTSYAGEIKKAFFTVMNFLLPLKG
                     "
BASE COUNT          338 a          172 c          225 g          283 t
ORIGIN      
        1 ggttgatgga aacagtagaa gaaaggatag taagattgtt ggtagaggaa aagaccctat
       61 tgaagatcct tagaactata gatggtcagt ttgataaaga aggtttaaat gaatggagca
      121 ataggcgtca tatctgctca attatacaag acaatccaat ttgggtaaat taggaaaata
      181 cagataaaca tttcaaaaag actgaccact tgaggtttag gcaatctaac taattgtctg
      241 ttaagtcatg aggccatttt tcacttggag tgaaattatt cttcttatcg atagttatga
      301 tttattatca atcgaggacg gcatgaaatc aattaaatag cgagtaggaa ggttaattcg
      361 tgctaatgag tgaagacaac aacaacattc cagacggcgt ccaaattcaa ctcggccaga
      421 tgaatttcaa tttcggtaaa atccatagaa acctacctgt ggccacgtta acggagctgg
      481 ccatccagag aaatgagggg atcctttcga gtacaggggc attagcggtt aatactggta
      541 agtttacagg aagatctcct gaagacaggt atattgtgga tgatgacaca acgcatgatc
      601 ttgtaaactg gggaaaggtg aatcatccac tccttccaga aaagtttgag gggatattca
      661 acaggatgag acagcatata tccggaaggg aattcttcat cttcgatggc ttcgtaggcg
      721 cagatcaaga aacgaggtta cctatccggg ttcttacgga ttcagtctgg catagcattt
      781 ttgccactca gatatttata cgacccaaca gcagagaatt acaaagtcat attcctgggt
      841 ttacactctt agctgttaat gatttctcag caattccaga aatagatggt acaaggagtg
      901 ggacgttcat aattattaat ttcacaaaaa aaatgattct aattggctcg acttcctatg
      961 caggagaaat aaaaaaagcg ttctttactg ttatgaactt tctcttgcca ttgaaggg
//
LOCUS       DATLQL010000358         1503 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1863545, whole genome shotgun sequence.
ACCESSION   DATLQL010000358 DATLQL010000000
VERSION     DATLQL010000358.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1503)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1503)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1503
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1863545"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            180..497
                     /locus_tag="VNB68_03735"
     CDS             180..497
                     /locus_tag="VNB68_03735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36491.1"
                     /translation="MNLEEFEKRAETIEDDELDNIKTMLKKIPDPEAKDEADRLGLST
                     IDVDIKNNQLAYNVLRNFVANMILEQVSDKSKKINYEQIIKEIVTHIMTFCIGYKAAL
                     MKN"
     gene            complement(528..890)
                     /locus_tag="VNB68_03740"
     CDS             complement(528..890)
                     /locus_tag="VNB68_03740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36492.1"
                     /translation="MKGYQKLTLITAILGLVALAPIIVGYVYFNSLIGFPILGLFLGG
                     ILLHVFVLLLVNAAGLYVAFRTKNTKMAGILLIVCVVVVLAAATYFGIPSFVLFCIAG
                     VLALKEKQTFSTVIQNKK"
     gene            998..1123
                     /locus_tag="VNB68_03745"
     CDS             998..1123
                     /locus_tag="VNB68_03745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36493.1"
                     /translation="MSQTEIENENSNTLDKNERKKVKEAFEESEHEHSSNCGCGG"
BASE COUNT          557 a          265 c          306 g          375 t
ORIGIN      
        1 cattaaagat gcacaaagcg caaacaagag tgaactagtt gaaacatggc aaaccatcaa
       61 aaaggatagg ttaagacatc tgcacatgtt aaaagaagcc ttagagaagg aaatacatgc
      121 ataaaacgct accaagaaac ccgtcctaga aaattgacaa acctaacggt aacgaaaata
      181 tgaatcttga agaatttgag aagagagcag aaaccatcga agatgatgaa ttagataata
      241 ttaaaactat gttaaaaaaa atacccgatc ccgaagcgaa agatgaggct gatcgacttg
      301 gtcttagcac gatagacgta gacattaaaa ataaccaact tgcttacaac gttttgagga
      361 actttgtggc aaacatgata ttagaacagg tgagtgataa atctaagaaa attaattatg
      421 aacagataat aaaagaaata gttacacaca taatgacatt ctgtatcgga tacaaagccg
      481 ctttgatgaa aaactgaact gatataggtt cttaatgaga acgtttttta cttcttattc
      541 tggatcacag tagaaaatgt ctgtttctct tttaatgcta gtactccagc gatacaaaat
      601 aaaacaaagg atggaattcc gaagtaagtg gctgctgcca gtacgacaac tacgcatact
      661 atcaacaaga tacctgccat cttggtattc tttgttctaa aggcgacata gagaccggca
      721 gcgttaacaa gaagtagaac aaacacgtga agtaatattc caccgagaaa gagacctagt
      781 atggggaaac cgattagact attaaaataa acgtaaccaa ctatgatagg cgctagagca
      841 actaatccga gtattgcggt aatcagtgta agtttttggt atcccttcac tttatgctca
      901 aagattattc tacaatattg cttatctcac tttactttta aatgataggc tggccaatcc
      961 atgaaatcta gatatggaat atagtattca ttctaacatg agtcaaacag aaatcgaaaa
     1021 tgagaattca aacacgttag ataaaaatga aaggaagaaa gtgaaagaag cattcgaaga
     1081 atctgagcat gaacattcaa gcaattgtgg ttgcggagga taatccgcat cgtacccttt
     1141 ttagtaactg cgacagtacc tgcgctaaat ggatttaaac aatattgtat atgttatgct
     1201 gtctcctgca gaaatggtat cacgggtttc ggtcccgttc cccgatctac tattaaggta
     1261 gagaggaatg gccaaatacg ggactggccg aaataagcct cttacctcca ggagaatagt
     1321 aaaggtcttg acatcctagg tacgggagtg gcagattcta aaacagaaat aaatccaagg
     1381 gtgggcaata ttgcggcagt gaaatgtcta tcgctcaatc agccatacgc agaactgctg
     1441 atatctggaa agaagacaat tgaagttagg agatggaaca ccaacttcag agggcagttc
     1501 ctc
//
LOCUS       DATLQL010000359         1692 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_445983, whole genome shotgun sequence.
ACCESSION   DATLQL010000359 DATLQL010000000
VERSION     DATLQL010000359.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1692)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1692)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1692
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_445983"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            524..1096
                     /locus_tag="VNB68_03750"
     CDS             524..1096
                     /locus_tag="VNB68_03750"
                     /inference="COORDINATES: protein motif:HMM:NF027788.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004527 - exonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease domain-containing protein"
                     /protein_id="HVD36494.1"
                     /translation="MTSSESAIYISIDIECSGFIPAEYSMLSLGACVVGNEDNESCTF
                     YIEIQPISDNYVKEALEIAGFSMQELKVKGIPPKEAMEKFADWIAKVSDGKKPVFVAS
                     PIAFDWCFVNYYFHKFLGWNPFGISGIDLKSVWLGKTNSKWHTLAMEDIKTRLGLDHI
                     AHTHNALEDAKEQSIIFRKMIEFTPVPERE"
     gene            complement(1296..>1692)
                     /locus_tag="VNB68_03755"
     CDS             complement(1296..>1692)
                     /locus_tag="VNB68_03755"
                     /inference="COORDINATES: protein motif:HMM:NF013231.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HVD36495.1"
                     /translation="HFIGERLGLNPTDHKCLDVIIRAGMPMTASQLADETGLSTGAIT
                     GVVDRLEKAGYVRRKRDPNDRRLVFINPLLDKAMVKLSPIFDPIKKAGRNLYSKYTDE
                     ELTLILDYIISCNQMIQQMITNMKAENQQ"
BASE COUNT          518 a          313 c          331 g          530 t
ORIGIN      
        1 aatagagcca agcgtcatcg gctggatgcc tgcagcagcc ctatactttc gagatcccga
       61 tggtcactcg atcgaatatc tgacgatgct gaagaatgaa ccaaggcctg agctcggaat
      121 cgtcccttgg tcagagtggc ttgcccaaag caaaccatag atctctattt gggtcagagc
      181 tagggtttat ttttggcaat gatataaaca gaattaagta acacttggaa cttcatgcgg
      241 gtatgcccag tttacatgca acgtctatga ctcgccttaa gaaatgcgaa attccttttt
      301 agaattagta ggaacttctt ttgttattac aggatttagc cctttttaaa atcgcgctaa
      361 catatagaat ccaaacatgc acactttctg tacatcttta taaaaaacta ttatttactt
      421 gatctgaaat caatcatatg gttttagtct cagaatgttg aacgcattta aaagatattt
      481 atgttaatga catcctctat aatatacaac acacagatca gacatgacct catctgaatc
      541 agcaatctat atctctatag atatagaatg ctcaggattt attcctgcag aatatagtat
      601 gttgagctta ggagcttgtg ttgtaggcaa tgaggacaat gaaagttgta ctttctatat
      661 cgagattcaa cctatttcag acaattatgt aaaagaagct ttagagattg cagggttttc
      721 aatgcaagag ctcaaggtga aaggtatacc acctaaagaa gctatggaga agtttgctga
      781 ttggattgca aaagtatcag atggcaaaaa gccagtattt gtagcatcac ctatagcttt
      841 cgattggtgc tttgtcaact attattttca caaattctta ggttggaatc catttggtat
      901 atctggaatt gatctaaagt cggtttggct tggcaaaact aatagcaaat ggcatacact
      961 tgctatggaa gatattaaga caaggctagg cttggatcat atagctcata cacataatgc
     1021 attagaagat gctaaagagc aatcaataat tttcaggaag atgatagagt ttactccagt
     1081 accggagcgg gagtaggtca ataaagcttc ttttcattat cttattaatg tctatcgtag
     1141 gcttcttttt gaattttgcc aatttggaat attacatatt cataagtaaa agactcatcg
     1201 tgagagcaaa ccctacatcc aagtagacta atctaacatt aagaccctat caagataata
     1261 tttacaccat gttgaaatat gaggtcggtg attcgctatt gttgattctc tgccttcata
     1321 ttggtgatca tctgttgtat catttgatta cagctgataa tataatccaa aatgagtgtc
     1381 aactcttcat cagtatactt agaatagagg ttcctacctg ctttttttat tggatcaaaa
     1441 atcgggctaa gcttgaccat agctttatcc aagagagggt ttatgaatac tagtcgtctg
     1501 tcgtttgggt ctcttttgcg tctgacatag cctgcttttt ccaaacggtc gacaacacct
     1561 gtgatcgcac cggtggagag acccgtctca tcagctaact gactcgcagt cataggcatt
     1621 cctgccctga tgataacgtc taagcatttg tggtcagttg gattaagtcc aagacgttca
     1681 ccaatgaaat ga
//
LOCUS       DATLQL010000360         1584 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1511867, whole genome shotgun sequence.
ACCESSION   DATLQL010000360 DATLQL010000000
VERSION     DATLQL010000360.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1584)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1584)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1584
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1511867"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..555
                     /locus_tag="VNB68_03760"
     CDS             <1..555
                     /locus_tag="VNB68_03760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36496.1"
                     /translation="SSGLVATEIGFAVINTMTKFIHSIISTDLTRSFEEDLEGIETGK
                     IPDKNVIAKAVDTLETAIMKFKASELLIGQELNDAVEKTGKDSSMVGVCPLCNIGNLL
                     IIKSLKSRKRFIVCSQYRMTGCSASAPLPQMGKLIKSKYPCPICRWPIMIRIFGRNKP
                     WKFCVNSKCESKNRCVAWKDSKSR"
     gene            complement(566..1414)
                     /locus_tag="VNB68_03765"
     CDS             complement(566..1414)
                     /locus_tag="VNB68_03765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HVD36497.1"
                     /translation="MKKSYKIALVQMKSSTIKSENLKLSVDYIRQAAKKKVELVCFPE
                     FQMAYSPLEQTAKELSTIAENANNGNFITTLRKEAKRHRIKIIATIYENIDTNRKKKT
                     DYRVSDTAILISEKGDVMSIYRKLHLYDALGFKESAKLVGGGKIERPVKVGIGKIGLE
                     ICYDIRFPEMSRILTLDGADVLAIPSGWVQGIMKEEHWQIMLKARAIENGCYVIAPDQ
                     VGNIFSGRSMVIDPFGITLLDMGNKEGVEVVEIARDRVESVRKSLPLLKNRRTDVYAD
                     HTSSFS"
BASE COUNT          457 a          318 c          289 g          520 t
ORIGIN      
        1 tcctcaggac tagtggcaac agagatcggt tttgctgtaa tcaacacaat gaccaaattc
       61 attcattcta taatatcaac cgatttgact aggtcgtttg aggaggacct tgaaggaatt
      121 gaaactggaa agatacctga caagaatgtt atagccaaag ctgtcgatac actcgaaacc
      181 gctatcatga aatttaaagc aagtgaattg ctgataggac aggagctcaa tgatgctgta
      241 gagaaaacag gcaaggatag ttcaatggtg ggtgtctgtc cgctatgcaa cattggtaat
      301 ttgttgataa tcaagtcatt gaagagcaga aaaagattta tcgtctgctc tcaatacaga
      361 atgactggtt gtagtgcttc agccccactt ccccagatgg gcaagctgat aaaaagtaaa
      421 tatccttgtc caatatgccg ttggcctata atgattcgca tctttggaag aaataaacca
      481 tggaaatttt gtgttaactc taaatgtgaa tcaaagaatc gatgcgttgc atggaaagat
      541 tccaagagca ggtagcaagt ctaagtcagc taaacgagct tgtgtggtca gcatatacat
      601 cagttcttct gttcttcaat aaaggcaatg acttcctaac agattcaaca cgatctcgag
      661 caatttcaac tacttcaact ccttctttat tacccatgtc gagtaacgta atgccaaagg
      721 gatcgataac catacttcgt cctgaaaata tgtttccaac ttgatctggt gcaattacat
      781 agcagccatt ttcaattgct cttgctttca gcattatctg ccaatgttct tccttcatga
      841 taccttgtac ccaaccagaa ggtattgcca atacatcggc accatctaag gtcaatattc
      901 gcgacatctc tggaaatctt atatcatagc atatctccag tccgattttt ccaatgccga
      961 cttttactgg cctttcgatt ttacctcctc caaccaattt agcagattct ttgaatccca
     1021 gtgcatcgta cagatggagt tttctgtaga ttgacattac atctcctttc tctgatatca
     1081 agattgccgt atctgaaaca cgataatcag tttttttctt tctattggta tctatatttt
     1141 catagatcgt tgcaatgatt tttattctgt gcctcttagc ctctttccgc agcgttgtga
     1201 taaagttgcc attattagca ttttctgcta ttgtagacaa ctcctttgca gtttgctcta
     1261 gaggagaata agccatttga aactcaggaa agcatactag ttcaactttt ttcttcgcgg
     1321 cttgtcgtat gtagtcaact gagagtttaa ggttttcact cttaatagtc gaagatttca
     1381 tctggactag tgcaattttg taactttttt tcacgtggtg tgcaccgcgt atattgttga
     1441 ttgattaacg tcaggttaat aatttaaaag tctatgtttg ttttttgttc atgtaaagta
     1501 agggcacaat caatattatc attgctctga ccaacttcta aattcagtct ccagaaatat
     1561 tcaaattcaa ttttgccata ttcg
//
LOCUS       DATLQL010000361         3187 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_89228, whole genome shotgun sequence.
ACCESSION   DATLQL010000361 DATLQL010000000
VERSION     DATLQL010000361.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3187)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3187)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3187
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_89228"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..579
                     /locus_tag="VNB68_03770"
     CDS             <1..579
                     /locus_tag="VNB68_03770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HVD36498.1"
                     /translation="WTETCPHYLTHTTEYDKIIGKVVPPIRSKGDVRMLWEAIKNGII
                     DTIGTDHVANKLNSKVVDHDLWKSLAGFPGLATMLPVMLSEGVNKNRITLERVSEVCS
                     YNTARIFGMYPKKGTIKCGSDADLTIVDMEKEQIVTPDLLQSYSDYTIYDGWKLRGWP
                     IMTIVRGKIVMENGYVDPLSIGYGEHVTTEGT"
     gene            719..1708
                     /locus_tag="VNB68_03775"
     CDS             719..1708
                     /locus_tag="VNB68_03775"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015440 - ABC-type peptide transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide/dipeptide ABC transporter
                     ATP-binding protein"
                     /protein_id="HVD36499.1"
                     /translation="MEIHRLKKYFVISSGILSSLGLTRKQYRKAVDDVTLTFRRGKVL
                     VLVGESGSGKTTLARLMLRAVEPDSGSIIFDGHDITNKSEKELKYFRKKVQMIHQDPY
                     TSLNPLMTILDIVKEPLDIFCKHYSNKERIEIVLKTLADVFLDPVIETSAKYPYMLSG
                     GQRQRVALARALVLLPELIIADEPVSMLDVSIRSEILHLMKKLSIEREITYLYITHDL
                     ATSRYIGDEIAVMYAGKIVEMGPAEGVLSKPLHPYTQALIQAVSEPDLSNLSAERIMP
                     IKSENNAIPAKGCKFYNQCFYSMDICKVDPRQKEVEVKHWVSCYLYDKENLSK"
     gene            2693..2830
                     /locus_tag="VNB68_03780"
     CDS             2693..2830
                     /locus_tag="VNB68_03780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36500.1"
                     /translation="MSDKGVWKNIINSLVSCGYSSELIKIDDLSVDSSTVAAKRATNR
                     L"
BASE COUNT         1054 a          560 c          664 g          909 t
ORIGIN      
        1 tggactgaaa catgtccaca ttatttgact catactaccg aatatgacaa gataattggc
       61 aaggttgtac ctccaattag atcaaagggg gatgtacgaa tgttatggga agcaataaaa
      121 aatggtataa ttgatactat aggaactgat catgttgcaa ataaactgaa ctcgaaggta
      181 gtggatcatg atttatggaa atccctagca ggatttcccg gccttgcaac catgttaccc
      241 gtaatgttaa gcgaaggggt aaacaagaac aggatcacac ttgaacgagt atccgaagtg
      301 tgcagctaca acaccgcaag aatatttgga atgtacccca agaaggggac aattaaatgt
      361 ggttcagatg cagatttgac gatcgtcgat atggaaaagg agcaaattgt gacacccgat
      421 ttgttacaat cttattcgga ttataccatt tatgatggat ggaagttacg tggttggccc
      481 ataatgacga tagttagggg caagatcgtt atggaaaatg gatatgtgga tccattatcg
      541 ataggatatg gggaacatgt aactacggaa ggaacataat tagagaccat gaaataatgc
      601 ctcttggttt gaaatccttc gtaagttact aaataatctc caattgtaga tcggaatggg
      661 gatactgttt atattccaat tatgtgaatg tgacagatgt taccccttga caagcattat
      721 ggagattcac cgcctgaaaa agtattttgt gatatcgagt ggaattctct cttcattagg
      781 cttgacacgg aaacaatata ggaaagcggt agatgatgtg acacttacat tccgcagagg
      841 aaaagtgctt gttctggtgg gtgaatcagg ctcgggtaaa actacattgg ctcgattaat
      901 gctaagggca gtagaacctg actcgggctc gatcatattt gatggacatg acattaccaa
      961 taagtcagag aaggagctaa aatatttcag aaagaaagta caaatgattc atcaagatcc
     1021 gtacacctct cttaatcccc tgatgacaat tttggacatt gtaaaagaac ctctggatat
     1081 attttgtaaa cattactcaa ataaagaacg gatcgaaatt gtgttaaaaa cattggctga
     1141 tgttttcttg gatcccgtta ttgaaacatc tgcgaaatat ccttacatgt tatcaggagg
     1201 ccaacgacag cgagtagctc tagccagggc tttagttctc ttgccggagt tgattattgc
     1261 agatgagcct gtatcaatgc tagatgtttc gatcaggtct gaaatactgc accttatgaa
     1321 aaaactaagc attgagcgcg aaataactta tctctatata actcacgact tggctacttc
     1381 tagatatatc ggagatgaaa tagccgtaat gtacgctgga aaaatagtcg aaatgggacc
     1441 agcggaagga gttttatcaa agcctcttca tccatatacg caagctctaa ttcaagctgt
     1501 atcagagcct gacctatcca atctttccgc ggaacgaatc atgcccatca agtccgaaaa
     1561 taatgccata cctgcgaaag gatgtaagtt ctataaccag tgtttctatt caatggatat
     1621 ctgtaaggtt gaccctcgac aaaaagaagt tgaagtaaaa cactgggtat cttgttatct
     1681 ttacgacaaa gagaatctct cgaaatgaga tttttgcgat tagtcctatt tacaagtgtc
     1741 catccttagc acaggtcact ttctttaagt actcctttta aatgaggcta ctttgtccta
     1801 aacagaaaat aagaataggg atgaaatcta taatcctctg ttggttaaag gaacttgttg
     1861 gtcattatgt tgatttctac tggtttaagg aagtcagatc aatttttcat gaattattgt
     1921 attttgccta aagaaaatat aggaatccca gtaaactact aatatcataa gcgaacatta
     1981 gaaataaatg aaaaaaaata tagagatgca gaacacgaga gagagactgt cactcgctga
     2041 tatatctcct gtttggcatt atcgcctcta cgaacataca cttcctttac cattttctct
     2101 cacttggttg aaatggtatt ttgagcttaa agttgcatca aaatgcgttg tgggcgaagc
     2161 atacaaatat gattcgtcct atttggtcga atgttcaaga tgcgattatt tcggatggaa
     2221 attcatgata tattttactt tacgatctag gtcaaagtta gagaaaaata agaatgcatt
     2281 tcttgtacat tggaccaacg aacatttgag attaacttaa caatgtcgat cctttcttga
     2341 attcaataaa gcagtaaata aaaggacaaa ctgactcttc catctttatt caagattttg
     2401 ttgtagaact catctggaaa ctaatttgat acattactct agttcctctt acccacttac
     2461 ctttagctta ggttatgttt ggttcacgct agtgagattt gaggaactaa ctgatggtca
     2521 atggaagctc ctagtaccgt caatccctct tcctgcttat actggtagac ctagagctaa
     2581 tgacaggagt tgcatcaatg gcatgttgta tgtatttatg agtggttgta ggtggatgga
     2641 catgcctacc aagtacggtt cctacaagat attctaggag cgacacaaga aattgagtga
     2701 caaaggtgta tggaaaaata ttataaattc cctggtgtca tgtggatatt cttctgaatt
     2761 gataaagata gacgaccttt ctgtggatag tagcactgta gcagccaaga gggcaacaaa
     2821 taggctttga tggtcataag aagacaaagg gtaacaagat acacgtagca gtaacatcac
     2881 aatgtttacc aatcgcaata gacctaggac ctggatatga acatgaaagt agaagatcat
     2941 tccgcttctg aatgacatac aaataacgaa tacaacggac gacccaagaa cagaccagaa
     3001 cgtgtctggg ctgataccaa gtaccataca tttctagtac tgacagatct ttacaacagg
     3061 cgtattagag cccaaataaa agaaaggagg aataccaaat cgaaacaagg tagaccgcat
     3121 gtcttcctct atcgagaata taggaaagtt agaagtagtg tagaaagatt ctttggatgg
     3181 ctcaaaa
//
LOCUS       DATLQL010000362         1365 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1687123, whole genome shotgun sequence.
ACCESSION   DATLQL010000362 DATLQL010000000
VERSION     DATLQL010000362.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1365)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1365)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1365
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1687123"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            581..>1365
                     /locus_tag="VNB68_03785"
     CDS             581..>1365
                     /locus_tag="VNB68_03785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36501.1"
                     /translation="MKEKRGSEDMQERSNAHDNESQFFGQNLNRFMGETERYVHRGIS
                     PGGYYKAVWCRDASYILRDMFLSGNVYDALKRINIIWSHQIAPGKEKVVYGRGSPQMK
                     LLPSIAGPEIETTFEGALPTTIYKSGFSEVYGKNPDIDSTALVISTTSWILLRFLNSY
                     DSSKDILPPNDLASANEFKVEVAKIVDFVVPCMLKAVEYLTRRDYDKDGLLEQSYNED
                     WMDTALRTGKIVYSQACWVLALEHLGALLDGMGKNELHCIIRL"
BASE COUNT          407 a          258 c          276 g          424 t
ORIGIN      
        1 aacagattcg caactgcaga gatagttgat ggttcttcag cggctactcc accgtcgtca
       61 ccgcctgcat cgtctgaagc cacgtcatca gaaacaacaa ctgaacagcc aacatcataa
      121 ttctccactg tttatcagga aagataggag taaatattcc gttttgattt ttatttagac
      181 ttttatcaat gctctctgct tttcgattca aatttgtttt ggccgatttg ttagttgagt
      241 ctgatgtagt ggcataaaat tttttatttt tttattttaa caaattttcc ttttttataa
      301 ccctatcgta ctcttttttt gcctcggctg catgttcagc tagagaacat atcatgtact
      361 attaatctgt atacttctca tactagtcaa tatgtttgag tatttattct cggataatta
      421 acaggatagc gtacaatctt attactaaag gccagatgcg tcaatatttt acgaggtagc
      481 tagactattt ttgtagaact ctggtgtaga acttctcagc atatcgcaca aatcattgac
      541 aagtagctca tacagatata tcaaacctac aatggcgatt atgaaagaaa agagaggttc
      601 agaagacatg caagaacggt ctaatgcaca cgataatgag tctcaatttt ttggtcaaaa
      661 ccttaacaga ttcatgggag aaacagaacg atatgtccat cgtggaatca gtcctggtgg
      721 ttattataaa gcagtctggt gtcgagatgc atcctatatt cttagagaca tgtttctctc
      781 tgggaatgtc tatgatgcgc tcaagaggat taacatcatc tggtcacacc aaatagcacc
      841 tggtaaggag aaggttgtct atggtcgagg atccccacaa atgaaattat taccaagtat
      901 tgcaggtccc gagatcgaga ccacctttga gggggccctt cccaccacaa tatacaagtc
      961 tggtttttca gaggtatatg gaaagaaccc ggatattgat tccacagctt tagtgatttc
     1021 tactacttca tggattctgt tgaggtttct taatagctat gactcatcta aggatatttt
     1081 gccacctaat gatttagctt ccgcaaatga atttaaggtg gaggtagcaa aaatcgttga
     1141 ctttgtggta ccctgtatgc ttaaagctgt tgaatatctc actagacgcg attacgataa
     1201 agatggacta ttagaacaaa gttacaacga agactggatg gacacagcgc taaggacagg
     1261 taagatagtt tatagccaag cctgttgggt tcttgcgctg gagcacctag gagctctact
     1321 agacggaatg ggcaaaaatg aattacattg tataatcagg ttgca
//
LOCUS       DATLQL010000363         1049 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1512327, whole genome shotgun sequence.
ACCESSION   DATLQL010000363 DATLQL010000000
VERSION     DATLQL010000363.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1049)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1049)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1049
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1512327"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(110..916)
                     /locus_tag="VNB68_03790"
     CDS             complement(110..916)
                     /locus_tag="VNB68_03790"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HVD36502.1"
                     /translation="MTLRSHAILNNKVEIPRLGLGVYQTAIGETTLRAVRYALKIGYR
                     HIDTAWLYGNEADVGRAVRESEIRREEIFITTKVWNSDQGYDSTLTACERSLRRLGLP
                     YIDLYLIHWPVKAKSKDTWKAMIQLLKDGKARSIGVSNYEIFDIQEILQNFDTVPSVN
                     QVEFHPFLYQEKLLQFCKNNHIQLEAYSPLTRGEKLNHATVKTIAQKYDKTAAQILIR
                     WGLQHDLVVIPKSIHEKRIKENSEVFDFQLEEQDMKLLNSLNEDLRTVFL"
BASE COUNT          293 a          213 c          194 g          349 t
ORIGIN      
        1 aaaaataaat tcgtctccgt tcagtattga acattgctta ctagaattgt ccgtgggcca
       61 tgaatgcatg tgagctatga acgtaataac aaattctgca taggttctat tacagaaaaa
      121 ctgtacgcaa gtcctcgtta agagagttga gcagcttcat atcctgttct tcaagctgaa
      181 aatcaaatac ctcgctattc tctttgattc gtttttcgtg tatagacttg ggaatcacga
      241 ctaggtcatg ctgtaggccc catcggatca aaatttgagc tgcagttttg tcatatttct
      301 gtgctatggt ttttacggtt gcatgattaa gtttttcacc tctagttaac ggactatagg
      361 cttcgagctg aatgtgatta ttcttgcaga attgtaatag cttttcttga tataggaacg
      421 gatgaaattc aacttggttt accgaaggca cagtatcaaa attttggagt atttcctgta
      481 tatcaaaaat ctcataattg cttaccccaa tagatctagc ttttccatct tttagtagtt
      541 gaatcatagc cttccacgta tctttgcttt ttgctttaac tggccagtgg atcaagtaga
      601 gatcaatata tggtagtcct aagcgtcgca aacttctttc acaggccgta agagtagaat
      661 cgtaaccttg atcgctattc catacctttg tagtaatgaa aatctcttct cttcgtatct
      721 cactttctcg aactgcccta cctacatccg cctcattacc atataaccat gcagtatcaa
      781 tatgtctata accgatcttc aatgcatacc taactgcacg caacgttgtt tctccaattg
      841 ctgtctggta aacgcctagg cctaggcgtg gaatctctac tttattattt agaattgcat
      901 gtgatcgcaa ggtcaatccc ataacgaaag atgttcctca atagtgcact taattctatc
      961 ggataattca catttaatca tgttggactg gaagttattg agacaaattt tgggcccaag
     1021 gggagtaagg gttgttaaca atacggaac
//
LOCUS       DATLQL010000364         2023 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2401418, whole genome shotgun sequence.
ACCESSION   DATLQL010000364 DATLQL010000000
VERSION     DATLQL010000364.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2023)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2023)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2023
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2401418"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..531
                     /locus_tag="VNB68_03795"
     CDS             <1..531
                     /locus_tag="VNB68_03795"
                     /inference="COORDINATES: protein motif:HMM:TIGR00177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor synthesis domain-containing
                     protein"
                     /protein_id="HVD36503.1"
                     /translation="RLLSKSSGIKDFHEHGNKEIKAAVLVISDSVASGKRIDKSGKTI
                     VDKLLKDGVEVIEYKILPDDVHLIEHNLKEFCDDSRVDLILTSGGTGLGPRDVTPEAT
                     HNVLEKEVVGISETTRAYGQRRLPLSMLSRGLSGVRGKTLIINLPGSVRAVSESMDSL
                     FPGILHAFRMLGGHGH"
     gene            complement(583..747)
                     /locus_tag="VNB68_03800"
     CDS             complement(583..747)
                     /locus_tag="VNB68_03800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36504.1"
                     /translation="MNGIQINIFMTKLIQATSTSKPLRRIDLLRRLTYNKLMGMIGIV
                     VHGKSTLKHP"
     gene            complement(751..>2023)
                     /locus_tag="VNB68_03805"
     CDS             complement(751..>2023)
                     /locus_tag="VNB68_03805"
                     /inference="COORDINATES: protein motif:HMM:NF015418.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HVD36505.1"
                     /translation="KSYVSIRSGYNKLRENIKIQPQIEYVDTLESYGRVLYKDVISSV
                     DIPPRTSSHMDGMAVIAADIKYASHSTPITLNIVRNVGLGNVPNHPLHSGQASRIPTG
                     GYLPPRADTVVPVEQTRILSKNKVVILSSLSKGSFISASGMDVKKGTKLFHRGAILRA
                     QDVALLSMVGITRVLVFKRPKVAIIPTGDELTDNPREINQGKIFNTNSHIISRLIQEG
                     GGIPLDLGTTADKAEEIQKKMKLALTKTDIILTIGGSSMGEHDVVEESINSMGSPGIL
                     VHGVKLDRGRVAGVGVIKGKAIIILPGPIQGSVGAFVVFVQPLLRFLSGLPEFSRMGK
                     NCSLAKRWEARKKFHDFVKVVFVQIKLTKYGKFKAIPVIGETAAMTVLTRANGYILVP
                     EKIAAIEAGEQIHVNLLPGLSYAAGYPVDFL"
BASE COUNT          580 a          409 c          409 g          625 t
ORIGIN      
        1 aggcttttga gcaagagcag cggcatcaag gactttcacg aacatggcaa taaagagata
       61 aaggctgcag tacttgttat tagcgactcc gttgcaagtg gaaaaagaat cgacaaatcg
      121 ggaaaaacta ttgtagataa attactaaag gatggtgttg aagtcattga atataaaata
      181 ttgcctgatg atgtccatct tattgaacac aatctaaagg aattttgtga tgattcgaga
      241 gttgatctca tactaacgag cggcggtact ggtcttggtc ctcgtgatgt tactccagaa
      301 gcgactcata atgttctaga aaaagaagtt gttggaattt ctgaaaccac tagagcttat
      361 ggtcaaagaa ggttaccact gtccatgctt tcgagaggat tatcgggagt gagagggaaa
      421 acactaatca ttaatcttcc agggagtgta agggctgtct ccgagtctat ggattcgctg
      481 tttccaggca tattacatgc atttagaatg ttggggggac atggacacta gtgacattca
      541 gtaacattag ttatcagctc gatcagtgct gtttaaaata ggttacggat gttttagtgt
      601 cgatttgcca tgaaccacaa tgcctatcat tcccattagt ttattatatg ttaatcgtct
      661 aagtagatct attcttctta aaggcttact agttgaggta gcctggatta attttgtcat
      721 gaatatgttt atttgaatac cattcattca ttatagaaag tctacaggat agccggcagc
      781 gtatgacaga ccaggaagca gattaacgtg tatttgttct cctgcctcta ttgcggcaat
      841 cttctcaggt accagaatgt atccatttgc tctagtcaat acagtcatgg cagcagtttc
      901 accaattacg ggaatggcct taaatttacc atatttagtt aactttattt gaacaaacac
      961 cactttgaca aagtcgtgga atttcttgcg tgcctcccaa cgttttgcca agctgcagtt
     1021 ttttcccatg cgactaaatt ctggcaggcc cgacagaaat ctgagtaatg gttgaacaaa
     1081 cacaacaaaa gcaccaactg atccctgtat aggaccaggt aaaattatta ttgctttacc
     1141 ttttatcact cccacaccag caactcgtcc acgatccagc tttaccccgt ggaccaagat
     1201 accagggcta cccatcgaat ttatcgattc ttctacaaca tcatgttctc ccattgaaga
     1261 accacctatt gtgaggataa tatccgtttt tgtcaatgct aacttcatct tcttttggat
     1321 ctcttcagct ttatctgccg tcgtacccaa atccaaaggt attccaccgc cttcctgaat
     1381 caatctagaa atgatgtgac tattggtgtt gaaaatcttt ccttgattta tttcacgagg
     1441 attatcggtt agctcgtccc ctgttggaat tattgcaact ttaggccttt tgaatactaa
     1501 cactctcgtg attccaacca tggataacag tgctacatct tgtgctctta gtatggctcc
     1561 cctgtgaaat agttttgttc ccttcttgac atccataccg gaagcagaga taaaagatcc
     1621 cttcgaaaga gaggataaaa ttaccacctt atttttagat aaaattcgag tttgttcgac
     1681 aggtacaaca gtgtcggctc taggaggcag ataccctcct gtgggtattc tagatgcttg
     1741 tcctgaatgc aacggatgat tgggaacatt tcccaatcca acgtttctga cgatgttgag
     1801 agttattggg gtagaatggg aggcatattt aatatcagcg gcgataaccg ccattccatc
     1861 catgtgagag gaggtccttg gaggaatatc aacagaagat atgacatctt tatacaaaac
     1921 cctcccgtaa gattccagag tatcaacgta ctcgatttgt ggttgaattt ttatattttc
     1981 tcttagctta ttgtatccac ttctaataga aacataggat ttg
//
LOCUS       DATLQL010000365         1247 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2221154, whole genome shotgun sequence.
ACCESSION   DATLQL010000365 DATLQL010000000
VERSION     DATLQL010000365.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1247)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1247)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1247
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2221154"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..337)
                     /locus_tag="VNB68_03810"
     CDS             complement(<1..337)
                     /locus_tag="VNB68_03810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HVD36506.1"
                     /translation="MGDYVFHKCEEIDLSSVIQINMSSLPEHYSDYFFHSILKELPDA
                     FIVSEYSKEVVGYVMCKIEYGFSNFRKLGFVKKGHVVSVAVQQQHRGKGVGRVLMEEA
                     INGVILRKAD"
     gene            complement(432..>1247)
                     /locus_tag="VNB68_03815"
     CDS             complement(432..>1247)
                     /locus_tag="VNB68_03815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36507.1"
                     /translation="LSISKQTAEYILERGNDSKTLFVSCTGVNPMFGFGGVPTSILRE
                     FLRDKMTEAYCSRTTNLPSSGTRPASLDIAIDVCKNMNAKCIQVISTRDGIDSLFFGS
                     VSEAFEESIKRMEYLMSDDYSNINSMIIGADNDSDSHLTLSDSLNHLWNSVHILKNKG
                     YGILIAENRKGLGSDALERLAEGRMSLEDSSSASEYIEGLEHLTFINELKEKYHLGVL
                     SSLPHYYLRSRFGFEPFSRSEVILERLFDINGKNHKILVIQDPNLALFKHVGK"
BASE COUNT          377 a          274 c          213 g          383 t
ORIGIN      
        1 cgtcggcctt cctcaggatg acaccgttga tagcttcttc catgagcacc ctcccaactc
       61 ctttgcctct gtgttgttgt tgaactgcca cagagacgac atgacctttc ttaacaaatc
      121 ctaactttct aaaatttgag aacccatact cgattttaca cattacatat ccaacaactt
      181 cttttgaata ctcagagact atgaatgcat ccggaagttc cttgagtatc gaatgaaaaa
      241 aatagtccga ataatgttca ggaagtgaac tcatattgat ctgtatcacc gacgacagat
      301 ctatttcttc acacttatga aaaacataat cacccattct tcgtaaagca gtctgcaatc
      361 tacaagtatg ggagatgaat tataattatt ttaactttat ccgttattac tgtgtgattt
      421 cccagtcccg tttatttgcc aacgtgtttg aataaggcca gattgggatc ttgaattaca
      481 aggatcttat ggttcttgcc atttatatcg aaaagcctct ccaagataac ttcactccta
      541 gaaaaaggct caaacccaaa tctagaacga agataataat gaggaagcga agagagcaca
      601 cctaagtgat acttctcttt cagttcgtta ataaatgtca aatgttccaa tccttcaatg
      661 tactcgctag ctgaagaaga atcttcaaga gacatccttc cttcagcaag tctctcgagt
      721 gcgtccgagc caagtccttt tctattttct gcaataagta ttccatatcc cttgttcttg
      781 aggatatgaa cggaattcca aagatggtta agcgaatcag atagtgtgag atgagagtct
      841 gagtcgttgt ctgcaccgat tatcatagag ttgatattgc tataatcatc ggacatcaga
      901 tattccatcc tctttatgga ttcttcaaaa gcctctgata ctgagccaaa aaataaacta
      961 tctattccat ccctggtaga gatcacttga atacactttg cattcatatt cttgcaaaca
     1021 tctattgcaa tatctagaga tgcgggccta gttccagaag agggcaaatt tgtggtcctt
     1081 gaacaatatg cttcagtcat cttatccctc aagaattcac gcaatatgga agtgggaaca
     1141 cctccgaatc caaacatggg atttacccca gtacatgata caaatagtgt tttcgaatca
     1201 tttcccctct ctagtatata ttcggcagtc tgtttgctta tagacaa
//
LOCUS       DATLQL010000366         1112 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1864799, whole genome shotgun sequence.
ACCESSION   DATLQL010000366 DATLQL010000000
VERSION     DATLQL010000366.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1112)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1112)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1112
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1864799"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..678
                     /locus_tag="VNB68_03820"
     CDS             <1..678
                     /locus_tag="VNB68_03820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HVD36508.1"
                     /translation="EELEDDAIISVDSGTITSWAARYINIRKGMKFSLSGTLASMACG
                     LQYAIAAQIAFPKRQSVAFVGDGGFTMLMSEFATAVQYNLPIKVVILKNNTLGMIRWE
                     QMAFLGNPEFGVEFTPIDFVRFAEACGGKGYSIREPSEVGSVLHEAMAQKIPTIIEAY
                     VDPFDPPMPPKVEMEFVRKLAESFAKGQPYATRIGLTLYRNQVHERLRGFHHHCPMDH
                     HDHHQQT"
     gene            887..>1112
                     /locus_tag="VNB68_03825"
     CDS             887..>1112
                     /locus_tag="VNB68_03825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36509.1"
                     /translation="MIDRKASTSPENEPNNIVEDDSIADKVDNNGSTIYETTSTSSPT
                     VIDLEIQDIEGIGPTTARKLKEAGIVSVMDL"
BASE COUNT          351 a          199 c          241 g          321 t
ORIGIN      
        1 gaggaactag aagatgatgc gataatatct gtagacagcg gaacaatcac tagctgggct
       61 gctcgttata tcaatattag aaaggggatg aaattttcgc tatctggtac cctcgcaagt
      121 atggcatgtg gtttgcaata tgcaatagca gcacaaattg catttccaaa aagacagtcg
      181 gtagcattcg ttggcgatgg tggttttacc atgcttatga gtgaatttgc aacagcagtt
      241 caatataatt tgccaatcaa agtcgtcata ttaaaaaata atacgttggg aatgattaga
      301 tgggagcaaa tggcctttct aggaaatcca gagtttggcg tggagtttac accaattgat
      361 tttgttagat ttgctgaagc ttgtgggggc aaaggttatt ccattaggga gcctagtgaa
      421 gtaggttctg ttttgcatga agccatggca cagaaaatac caacaataat tgaagcttat
      481 gtcgatcctt ttgatccgcc gatgccgcca aaagtagaaa tggaatttgt tagaaagtta
      541 gccgaatcat tcgcaaaggg acaaccatac gctacaagaa ttggtttgac tttgtatagg
      601 aatcaggttc atgagagatt aagaggtttt catcatcatt gcccaatgga tcaccacgac
      661 caccatcagc aaacgtaagc tcacacgtgg aggtagcgat agaagttgta gtgatgccga
      721 caatcctcat ctaagatacg tagttccaga ttatccacat gtaaaaagga attatttttt
      781 gaaattatct ttgcaatggc gattcccttt ctttctcctc cctccctccc ctatccatgc
      841 tttattacat taatatgacg attacggaga attcgtgagt atctatatga tagatagaaa
      901 agcatctact tctccagaga acgaaccaaa taatattgtt gaagatgata gtatagcaga
      961 taaggttgat aataatggta gtacaatcta cgagactaca tcaacttctt ctcctactgt
     1021 tattgaccta gagatccagg atattgaagg aattggtcca acaacagcta gaaaactaaa
     1081 ggaagccggg attgtttctg taatggatct tg
//
LOCUS       DATLQL010000367         3753 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_90392, whole genome shotgun sequence.
ACCESSION   DATLQL010000367 DATLQL010000000
VERSION     DATLQL010000367.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3753)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3753)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3753
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_90392"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..455
                     /locus_tag="VNB68_03830"
     CDS             <1..455
                     /locus_tag="VNB68_03830"
                     /inference="COORDINATES: protein motif:HMM:NF014103.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36510.1"
                     /translation="DLFSKIGYVIHCFNCGHREIWDVESNPRICRVCSSKCYIGGPLW
                     KEPLNDQGFLESMVQLIPTLGVFQRTPGLRRSMDNLLSTGIEEVQEPFYFHTDHIASK
                     LKTSPLALSEIVDTLKRVGFMASKASLSPQGFKTNASLSQILNTLKRS"
     gene            757..1542
                     /locus_tag="VNB68_03835"
     CDS             757..1542
                     /locus_tag="VNB68_03835"
                     /EC_number="7.6.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HVD36511.1"
                     /translation="MAKLRLKNITKRFTTTDAKNDHVTAVENIDLLIEEGEFVCFVGP
                     SGCGKSTLLNILAGLDRPSEGEIILNGQPIDGTGPDRIIVFQENALFPWLKVIDNVEF
                     GLKVAGLNKEKRREIAMHYLETMQLTKFADSYTYQLSGGMKQRVSLARALVMDPEVLL
                     MDEPFAALDSQTRDLLSVELQLIWSKTKKTIIFVTHNIMESVCLGDRVIVFTNRPGKV
                     KKEIIIDHRRPRLSEDNDLQPFYRAVLDELKSEVTATRRKVDL"
     gene            complement(1537..2319)
                     /locus_tag="VNB68_03840"
     CDS             complement(1537..2319)
                     /locus_tag="VNB68_03840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36512.1"
                     /translation="MTIASKVLFELNPPKLLTNDHFKLLELDSQIDKFVKRAQKLAEY
                     VDGLHITDSVLGIPRVSSVNAAAILRKSGIKTELSCSLRISDRNLITIFQFLSEAIRN
                     NIQRVLILKGDDPCYGPRMSSLTASEVLRILTLYRFNEHMKLDLSFPSRIVNPSSFEK
                     KLKVKPHAFVTQSISSLADLRSIVDLARPYGIKIIACILCPSEKNKISAQNIGLDWSA
                     YEKHPVHFISEAAMLSEKVLLCSPNSFNDGLDLVKELGKNNL"
     gene            2454..3038
                     /locus_tag="VNB68_03845"
     CDS             2454..3038
                     /locus_tag="VNB68_03845"
                     /EC_number="3.6.1.55"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005777 - peroxisome [Evidence IEA];
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003986 - acetyl-CoA hydrolase activity
                     [Evidence IEA];
                     GO_function: GO:0008413 - 8-oxo-7,8-dihydroguanosine
                     triphosphate pyrophosphatase activity [Evidence IEA];
                     GO_function: GO:0010945 - coenzyme A diphosphatase
                     activity [Evidence IEA];
                     GO_function: GO:0030145 - manganese ion binding [Evidence
                     IEA];
                     GO_function: GO:0035539 - 8-oxo-7,8-dihydrodeoxyguanosine
                     triphosphate pyrophosphatase activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0009132 - nucleoside diphosphate metabolic
                     process [Evidence IEA];
                     GO_process: GO:0015938 - coenzyme A catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA pyrophosphatase"
                     /protein_id="HVD36513.1"
                     /translation="MLDFDQIRDTLGRVLKKDYFTIDKKLPNACKVAGVLVIIHPLNN
                     IPHIVLTKRSLKLKDHAGQISFPGGNLEIEDLSPLDAALRETREEIGLEIHRDKIIGG
                     LDSVQTSTSKYVIYPYVAMIESGLYIRANDEVEKIINIPIPNILDILLQYSLTTDGGT
                     YRRGVQILWEDEVIWGATATILKQLSHYFRNNRS"
     gene            3474..>3753
                     /locus_tag="VNB68_03850"
     CDS             3474..>3753
                     /locus_tag="VNB68_03850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis decarboxylase"
                     /protein_id="HVD36514.1"
                     /translation="MAIESLGEYIAALESIGQLKRVRTKVNTDLEIAEILRRLMYKVD
                     QPAVLFENVEGYKYPVLGNAFGSLDRLKIALGLEDFSEIGERISVISRM"
BASE COUNT         1198 a          670 c          766 g         1119 t
ORIGIN      
        1 atgatctttt ttcaaagatc gggtatgtaa ttcactgctt taactgcgga catcgtgaaa
       61 tatgggatgt cgaaagtaat cctagaattt gcagagtgtg ttcatcgaaa tgctacatag
      121 gaggccccct ttggaaagag cctctaaatg atcaaggatt tctagaaagt atggtccaac
      181 tgatacctac acttggggtg tttcaaagga cacctggtct ccgcagatca atggacaact
      241 tactctccac aggaattgag gaggttcaag aaccttttta cttccatact gatcatattg
      301 catcgaaatt aaaaacaagt cctcttgctc tatcagaaat agttgatacc ctaaaaagag
      361 tgggattcat ggcttcgaag gcaagtctaa gtccgcaagg atttaagact aatgcttcgc
      421 tcagccagat attaaataca ctgaaaagat cctagtacga gaaaggtatt actatttagt
      481 ttctgtacaa actttgcctt caaccatctg ttgaaatacg gccattacgc caaaaaatca
      541 ttaatgatgt agatttattc gcaggaattt tgtgataaca ttcgagctca gattccgtct
      601 ttgtcacatt agcacaggag aaagtctatg aagatcgtat gagaaaattt atacgaaagt
      661 gaaaaagtat taaagacaaa ttaagagagc taaacatggg tcattgtact aaaggaatct
      721 cggatttttc atttgcatcg gagtcaagat gaaaagttgg cgaagcttcg tttgaagaac
      781 atcacaaaac gattcacgac tactgatgcc aaaaatgacc atgttacggc agtagaaaat
      841 atcgatctcc taattgagga gggtgagttt gtttgttttg ttggtccatc tggttgtggt
      901 aagtctactc tcctaaacat actggcgggc ttggacaggc ccagtgaagg cgaaataatt
      961 ctcaacggtc aacccatcga tggaactgga cctgacagaa tcatagtgtt tcaagagaac
     1021 gcactgttcc cgtggctcaa agtcatagac aatgtagaat ttggtctcaa agtagcgggc
     1081 ttgaacaaag agaagagaag agaaatagca atgcattatc ttgaaacaat gcagcttaca
     1141 aaatttgcag attcatatac ctatcagttg tctgggggaa tgaaacagcg tgtatctctt
     1201 gctagggcat tggtaatgga ccctgaagtt ctacttatgg atgaaccttt tgcagcactg
     1261 gattctcaaa ctagggattt gctgtccgtt gaactccaac taatttggtc aaaaacgaaa
     1321 aaaaccataa tcttcgtcac acacaatatc atggaatctg tatgtcttgg agatagggtt
     1381 atcgtattta caaatcgccc agggaaagtc aaaaaagaga tcattattga tcacaggcgt
     1441 cctaggctta gcgaagataa cgatctacaa ccattctata gagccgtatt agatgaacta
     1501 aaaagtgaag taactgccac gcgtcgaaaa gtagatctat aaattatttt ttccaagttc
     1561 ctttactaaa tccaaaccat cattgaagct gttgggcgaa cacaataata ctttttcaga
     1621 aagcatagct gcttctgata tgaaatgaac tggatgcttt tcatatgctg accagtccaa
     1681 tccgatattt tgtgccgaga ttttgttctt ctccgacgga cacaaaatac atgctataat
     1741 ttttattccg taaggtctgg caagatccac tatgcttctt agatcagcca aagacgatat
     1801 tgactgcgtc acaaacgcat gaggtttaac cttaagtttt ttttcgaaac ttgaaggatt
     1861 gacaattcga ctagggaaag ataagtcaag tttcatgtgc tcgttaaagc gatagagtgt
     1921 taatattcta agaacttctg atgcggttag cgatgacatt ctaggaccat agcaaggatc
     1981 gtcgcccttt agtatcaata cacgctggat attgttccgt atcgcctcgc tcaagaactg
     2041 aaatattgta atcaagttac gatcagaaat gcgaagactg cagctcagtt ctgtttttat
     2101 tcctgatttt cttaatattg cagcagcatt tacacttgag acacgaggaa ttcccaagac
     2161 gctatcggtt atgtgtaatc catcgacgta ttccgctaac ttttgggccc tcttcacgaa
     2221 tttatcgatt tgtgagtcta attctagaag cttgaagtga tcatttgtaa gtaattttgg
     2281 cggatttagc tcgaataata cttttgaggc aattgtcata attgaatctt agtgccaaat
     2341 gaataaaaca aacatagatc tcgtacgagt agttttatta ttaccattac tagccaattt
     2401 gaattggatc tcaggttgat agatttaagt gtatatttcg cgcggatgtt gtagtgcttg
     2461 atttcgatca aattcgtgat actctaggac gtgttctgaa aaaggattat tttacaatcg
     2521 ataaaaagtt accaaatgct tgcaaggtcg caggagttct cgtaataatc catcctttga
     2581 ataacatacc ccatatagtc ttgaccaaaa ggagccttaa gttaaaagat catgctggtc
     2641 aaatatcgtt tcctggaggg aacttggaga tagaagattt aagtcccttg gatgccgcat
     2701 taagagaaac tagggaagaa attgggctgg aaatacacag agacaaaata ataggaggtc
     2761 ttgatagcgt acaaacatcc acttcgaagt acgtcattta tccatatgta gcaatgattg
     2821 aaagtgggtt atacataaga gcaaatgatg aagtagaaaa aattattaat atcccgattc
     2881 caaatatctt agatattcta ctacaataca gcctgaccac ggatggtggt acttatagac
     2941 gcggggtaca aattctgtgg gaagatgaag taatttgggg tgcgacggca actatattga
     3001 aacaattatc ccactatttc cgaaacaatc gtagctaagc cgtaaaggca gagtcactgt
     3061 tagactatgt atgaaatgtg tactttgaaa ctcagaggtg atctttttca atatgcatgg
     3121 tcttcagact tgtgtttcct taattcttta aaagtactga atcttgagat gcacttatcg
     3181 catttccatt gatttgtttt tgcttgcctg taaaattgaa atgcctcgtt tgcgctctcg
     3241 tacttgccag tactagaatt gtaatttaca gcgttataat taattctata ttttattctt
     3301 gaaaaattta ctttcaatac tgcccaactt aataaccgac agatattaaa aaagcgaagt
     3361 taattatcta cacggagttt ggtaatctat ttttacaatt atatagcatt atagaatgca
     3421 agacatcttg gtatgtggga agactaatat cttatttttg aagcaagaac cttatggcaa
     3481 ttgagagtct aggtgaatac atagctgccc ttgaaagtat cggccaactg aaaagggtta
     3541 ggacaaaagt gaacacagat cttgaaattg ccgaaatact gcgaaggctt atgtacaaag
     3601 tcgatcaacc ggcagtatta tttgaaaatg tggaaggcta caaatatccg gtgctaggta
     3661 acgcatttgg ttcactagac cgtttaaaaa tagcacttgg tttggaagac ttctcggaaa
     3721 ttggcgaacg catatctgtg atctcgagga tgc
//
LOCUS       DATLQL010000368         1491 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2403009, whole genome shotgun sequence.
ACCESSION   DATLQL010000368 DATLQL010000000
VERSION     DATLQL010000368.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1491)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1491)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1491
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2403009"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1007
                     /locus_tag="VNB68_03855"
     CDS             <1..1007
                     /locus_tag="VNB68_03855"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HVD36515.1"
                     /translation="PKNVKKALVRAFDLGQYHYTETRGISKLCEAIAKKVGNSVAKEQ
                     VIITPGARFAVFATITSLLKAGDEMVTIEPAWPAYRECADFVGARTKVIDTTIKSKWT
                     PDIKDLEATINDNTKMLVLNYPNNPTGKVLNDKTLSIVLSLARDRGIYLLSDEVYSDY
                     AFNGFKSVLEYQYEKAITISSFSKAYAMTGFRIGYAIANREILAKIAKVQATAMTSVA
                     EPIQYSALAALRVEPKQYAKYIKERLNFVTDKLQRIGLTFVYPDGAMYVFPELQNHPS
                     VGDDITLINKLLRAGVAIAPGSGFGANYRDFVRISACQPRRLLEKGLHILSNALTSGE
                     "
     gene            1009..>1491
                     /locus_tag="VNB68_03860"
     CDS             1009..>1491
                     /locus_tag="VNB68_03860"
                     /inference="COORDINATES: protein motif:HMM:NF014234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004665 - prephenate dehydrogenase (NADP+)
                     activity [Evidence IEA];
                     GO_function: GO:0008977 - prephenate dehydrogenase (NAD+)
                     activity [Evidence IEA];
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006571 - tyrosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase/arogenate dehydrogenase
                     family protein"
                     /protein_id="HVD36516.1"
                     /translation="MIKNIAIIGGGGKMGSWFSKYFSNNMRIKQLVYDINPQSIRSYS
                     NVVVCENITQCISSADLVLLCVPVAQTPSLITYCALKMKSRSILAEISSVKYRTFKAL
                     KRVSKKVKPLCIHPMFGPGAPSISQMKILLVPVKNKVTELNILNSIFEGAKITILPDP
                     H"
BASE COUNT          489 a          282 c          309 g          411 t
ORIGIN      
        1 ccccaaaaaa tgtaaaaaaa gccctagtca gggcatttga tctaggacaa taccattaca
       61 ctgaaacgag agggatcagc aaattatgtg aagcaattgc aaaaaaagtt ggtaacagcg
      121 tagcaaaaga acaggtaata attaccccag gtgcgaggtt tgctgtcttt gcgacaatta
      181 catctctatt gaaagcaggt gacgaaatgg ttactataga accggcatgg ccagcgtatc
      241 gagaatgcgc agattttgtt ggggctagga ctaaggttat agatactaca atcaaatcaa
      301 aatggacacc tgatatcaaa gatctagagg ctacgataaa tgacaataca aagatgcttg
      361 ttctaaatta tccgaataac cctactggga aggtcttaaa cgataagact ttaagcatag
      421 tcttatcgct tgcaagggac aggggtatat atcttctgag tgacgaggta tactccgatt
      481 atgcttttaa tggatttaag agtgttttag agtaccaata tgaaaaggct ataacaattt
      541 cctctttttc aaaagcttat gctatgacag gattcagaat tggatatgca attgccaata
      601 gagagatact tgccaagatc gccaaagtgc aggcaactgc aatgacgagc gttgcagagc
      661 ccatacaata ttcagcgtta gctgcattga gagtagaacc aaagcaatat gcgaaatata
      721 ttaaagaacg attaaatttt gttacagata agttacagag gatagggctt accttcgttt
      781 atcccgacgg agcaatgtac gtttttccag agctccaaaa ccacccctct gttggtgacg
      841 atatcacatt gattaataaa cttcttcgag ctggcgtggc catagctccc ggtagtggat
      901 tcggagctaa ttatagagat ttcgttagaa tttctgcttg ccaacccaga cgccttctgg
      961 aaaaaggact acatatcttg agcaatgctt taacttccgg agagtaacgt gataaaaaac
     1021 atcgctatca taggaggagg aggcaagatg ggttcgtggt tctcaaagta cttttcgaat
     1081 aatatgcgga taaagcaatt ggtgtatgat atcaatccac aatcaatcag atcctactca
     1141 aacgtcgttg tttgtgaaaa tattactcag tgtataagct ccgcagatct ggtattgctc
     1201 tgtgtgcccg tggctcaaac cccttccctt attacgtact gcgctttaaa aatgaaatca
     1261 cgttctatac ttgcagaaat ttcgtctgta aagtatcgga cgtttaaagc gcttaaaaga
     1321 gtttccaaaa aagtcaaacc actttgcatt catcctatgt ttggacccgg ggcacccagt
     1381 ataagtcaaa tgaaaattct attggtacca gttaaaaata aggtgactga attaaacatt
     1441 ctaaatagca tatttgaggg tgcaaaaata actattcttc ctgatcctca t
//
LOCUS       DATLQL010000369         1001 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_448594, whole genome shotgun sequence.
ACCESSION   DATLQL010000369 DATLQL010000000
VERSION     DATLQL010000369.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1001)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1001)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1001
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_448594"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..351
                     /locus_tag="VNB68_03865"
     CDS             <1..351
                     /locus_tag="VNB68_03865"
                     /inference="COORDINATES: protein motif:HMM:NF012575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske (2Fe-2S) protein"
                     /protein_id="HVD36517.1"
                     /translation="YRPVCKSDEIREKSMKMLKVDHIEVLVGRLNGRLFACNNSCPHR
                     GASLVKGELKCNNNIACWMHGYEYNVFTGKLENMKSWKKEDTWMEQSSEWRRSGDLIL
                     YSIMEEGGTIYVCL"
     gene            complement(485..>1001)
                     /locus_tag="VNB68_03870"
     CDS             complement(485..>1001)
                     /locus_tag="VNB68_03870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36518.1"
                     /translation="SYISGKVFSTRPHRAVLTSIPILAAIIIIYFLYLQQVIASTISM
                     DLPYRIALTFGLLFPAGFLMGFQFPSLIKMASLIAIQNRNKENKAITVFQYDNYHDSK
                     NNNTTLLWGVNIVASVIGTVLAAISAMIIGFNGNLLIGLGMYLGAGACTLFSIYHIMN
                     NRTTVRIGGNL"
BASE COUNT          327 a          180 c          206 g          288 t
ORIGIN      
        1 tatagaccag tttgcaaaag tgacgaaata cgtgaaaagt cgatgaaaat gttaaaggta
       61 gatcacatag aagttcttgt tggaagactg aacggcagac tctttgcatg taacaattca
      121 tgtccacatc gaggagcatc acttgtcaaa ggagaattga aatgcaataa taatatcgca
      181 tgttggatgc atggatatga gtataatgtt tttaccggca agctggaaaa catgaagtca
      241 tggaagaagg aggacacatg gatggagcag agctcggagt ggcgtagatc cggtgacctg
      301 atcctgtact caataatgga ggagggggga accatatatg tgtgcttata accatccgat
      361 catgctagcc gctactttat tcttgatttg ataggctaat gcaaacgaca tacaatagaa
      421 attatatacg gtgtccaaat agaaaagctt tctagtcttt attattcgtg cgctagtttc
      481 tttgttacaa gtttccacca attcttactg ttgttctatt attcataatg tggtaaattg
      541 aaaataatgt gcatgcgcct gctcccaaat acatcccaag acctatcagc aaatttccat
      601 tgaagccaat tatcatagca gatatagctg caagaaccgt cccaataact gatgcaacaa
      661 tattgacacc ccatagcaga gtggtattat tgttcttgct atcgtggtaa ttgtcatact
      721 ggaatactgt tattgcctta ttctccttat tcctattttg gattgcaatt aatgatgcca
      781 tcttaataag agaagggaat tggaatccca tcaaaaatcc tgccggaaat aatagtccaa
      841 atgtaagtgc aatcctgtac ggcaaatcca tactgatggt agatgctatt acctgctgca
      901 aataaagaaa atagataata ataatagctg caagaattgg aattgaagtc agtacggctc
      961 tatgcggtct ggtgctaaac accttgccag aaatatacga t
//
LOCUS       DATLQL010000370         1212 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2403340, whole genome shotgun sequence.
ACCESSION   DATLQL010000370 DATLQL010000000
VERSION     DATLQL010000370.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1212)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1212)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1212
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2403340"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(92..922)
                     /locus_tag="VNB68_03875"
     CDS             complement(92..922)
                     /locus_tag="VNB68_03875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HVD36519.1"
                     /translation="MQLPFQSKQAQERKKHRKIDFKDAASTAAFLVVFIGLWEVIFLL
                     GVFPIVSLPSPLMVAQSLVDLISEGTLIYSTAVTLLRLFVGFSTSIIIGVGVGLAMVK
                     FPQFGKTMNSFAVGLQSFPSIAWVPFAILLIGLNDSGILFVVIMSSVFSIMISTYSGI
                     RNIPPIYIRSARNMGAKGISLFRHVMLPAATPSLIIGIRQGWSFAWHALVGAEMLITT
                     LVGLGYILSVGREFSNMPQIIAAMIVIFTIGWIFDRLVFSKVDEKVRDRWGLNQHTER
                     "
     gene            complement(900..>1212)
                     /locus_tag="VNB68_03880"
     CDS             complement(900..>1212)
                     /locus_tag="VNB68_03880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HVD36520.1"
                     /translation="PFAGLDIHTRQSLCSELLRIHHETKKTILFVTHNIDEAVLLGDR
                     VILLSHSAGKIRREFIVNIPRPRDLHHVAIRNIVSEVMDELRESSYRNKDLSYATTIS
                     I"
BASE COUNT          381 a          261 c          215 g          355 t
ORIGIN      
        1 caagatgtac ttattccaat gatcaaatat cttggaaatg tattacttga ttggtaaatg
       61 gttatgactg gttgtagttt atagtggaac gctatctttc agtatgctgg tttagacccc
      121 atctatcacg taccttctca tctacctttg aaaacactaa tctatcgaat atccatccta
      181 ttgtaaatat aactatcatg gcagcaatta tctgaggcat attagagaat tctctaccta
      241 ctgaaagaat gtaacccaat cctactaacg tcgtgatcaa catctccgca cctaccaacg
      301 cgtgccatgc aaacgaccag ccctggcgta tcccgattat aagtgaaggg gtggcagccg
      361 gtaacatgac atgacggaac agtgatattc cttttgcacc catattacgc gcagatcgta
      421 tgtaaattgg aggaatgttt ctaatgccgc tataggttga aatcatgatg gaaaataccg
      481 agctcataat cacgacaaaa aggattcctg aatcattcaa tcctattaat aatattgcaa
      541 atggcaccca ggcaatactc ggaaacgatt gaaggcccac tgcaaatgaa ttcatagtct
      601 ttccgaattg tggaaatttc accatggcca atccgactcc tacaccgata attatagagg
      661 tactaaaacc aacaaacagt ctcagcagag taacagcagt actataaatc aacgtaccct
      721 cggagattag atctacaagt gattgagcaa ccatcaaggg agacggtaac gatactatag
      781 gaaatacccc aagcaggaat attacttccc aaagccctat aaatacaaca aggaacgccg
      841 cagtacttgc agcatccttg aaatcgatct tcctatgctt ttttctttct tgtgcttgtt
      901 tagattgaaa tggtagttgc atatgacaga tccttgttcc tataagaaga ttctcttaat
      961 tcatccatca cttcagacac aatatttctt attgctacat gatgtaaatc cctgggtcta
     1021 gggatattca caataaattc tctcctgatt tttccggctg aatgagaaag gagaataact
     1081 ctatctccca acaatactgc ttcatctata ttgtgagtta caaatagtat ggtttttttg
     1141 gtttcatgat gtattcgcaa tagctcgcta catagtgact gtcttgtatg aatgtccaaa
     1201 cctgcaaatg gc
//
LOCUS       DATLQL010000371         1275 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_449463, whole genome shotgun sequence.
ACCESSION   DATLQL010000371 DATLQL010000000
VERSION     DATLQL010000371.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1275)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1275)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1275
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_449463"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..767
                     /locus_tag="VNB68_03885"
     CDS             <1..767
                     /locus_tag="VNB68_03885"
                     /inference="COORDINATES: protein motif:HMM:NF024989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HVD36521.1"
                     /translation="PWIGEGRCPACRIGEENLCDTPRSLGVYTDGGYAEYVLIPSYRY
                     LLKMGDELDTNASATLSCSALTAYGAVKNANLKPNDNVVIVGAGGLGLMAIQLAKAVT
                     GSKIIAMDLNDEKLGAAKKNGADNTINSKKEDPVKAVMELTDKMGADAVLDFVNASKT
                     VESDIQFLRRRAKLVLVGLFGGELKLSLVSMPTRAYRLIGSYTGTLSDMVELVSLARR
                     GVIKPLVSNRFKLNQATEALTMLKEGKILGRGVINP"
     gene            764..>1275
                     /locus_tag="VNB68_03890"
     CDS             764..>1275
                     /locus_tag="VNB68_03890"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HVD36522.1"
                     /translation="MNEGKVKTINPATEEVLNEYKIMTKEQINDKVKKAQNTFQDWKK
                     DASKRTDLVHDFATQLRKDKENLARTATNEMGKAIKEARAEVEKCAWAMEYYADNGQI
                     FSTDEVVNTDARKTVIRFQPIGVIGSIMPWNFPYWQALRFAAPSLMIGNTIVLKPASA
                     TMQCGIEIEKT"
BASE COUNT          458 a          192 c          304 g          321 t
ORIGIN      
        1 acccgtggat aggtgaagga cggtgtccag cgtgcagaat tggggaagag aacttgtgtg
       61 atacacctag atcgttaggt gtctatacgg atggaggtta tgccgagtat gtactaatac
      121 caagttacag atatctatta aaaatgggcg atgagttgga tactaatgca agcgccacat
      181 tatcatgttc tgcacttaca gcatatgggg cggtaaagaa tgctaatcta aaaccaaatg
      241 ataatgtagt tattgttggt gcaggtgggc ttgggttgat ggctatacaa ctagcaaaag
      301 cagttacagg ctccaaaata attgccatgg atttaaatga tgaaaaatta ggagctgcaa
      361 aaaagaatgg tgcagataac actataaatt ctaaaaaaga agatccagta aaagcagtca
      421 tggagttgac tgataaaatg ggtgctgatg cagtgctcga ctttgtcaac gcttcaaaga
      481 ctgtagagtc cgatattcaa tttcttagaa gaagagcgaa attggttttg gtaggactct
      541 ttggaggcga attaaaatta agcttagtaa gtatgccaac gagagcatac agattaatcg
      601 gttcatatac tggaacacta agtgatatgg tggaattggt ttcgttagca agaagagggg
      661 taatcaaacc acttgtctcg aatcgattta aactcaatca agcaacggaa gcattaacaa
      721 tgttaaaaga gggtaaaatt cttggtagag gagtgataaa tccttgaacg aagggaaagt
      781 aaagacgata aatcctgcaa cagaggaggt tcttaacgaa tacaaaataa tgaccaaaga
      841 acagataaat gacaaagtaa agaaggcaca aaatacgttt caagattgga aaaaagatgc
      901 aagcaagaga actgatctcg ttcacgattt tgctactcaa ctaagaaaag ataaggagaa
      961 ccttgctagg acagccacaa atgaaatggg aaaggcaata aaagaagccc gagctgaagt
     1021 tgaaaaatgt gcttgggcga tggaatatta tgctgataat ggacagatct tttcaacaga
     1081 tgaagttgtc aacaccgatg cccggaaaac tgtgataaga tttcagccta ttggagtaat
     1141 aggtagtata atgccatgga attttcctta ctggcaagca ttaagatttg ctgctccttc
     1201 attaatgatt ggaaatacta ttgtattgaa accagctagt gctaccatgc agtgtggaat
     1261 tgaaatcgag aagac
//
LOCUS       DATLQL010000372         2574 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_91996, whole genome shotgun sequence.
ACCESSION   DATLQL010000372 DATLQL010000000
VERSION     DATLQL010000372.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2574)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2574)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2574
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91996"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(671..1492)
                     /gene="pstB"
                     /locus_tag="VNB68_03895"
     CDS             complement(671..1492)
                     /gene="pstB"
                     /locus_tag="VNB68_03895"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein
                     PstB"
                     /protein_id="HVD36523.1"
                     /translation="MSSSKEITENILTKSLEAVTEPNYKVSIRRLDASFGAKQALKNI
                     NLDVKENSVTAFIGPSGCGKTTLIRCLNRMHEMTPGAYAKGQVILDGINIYDKKVDPV
                     IIKRRIGMVFQKPNPFPTMSIYDNVAAGLKLNGVKDKKMIHDIVKESLEGAALLEEVK
                     NELDKPGVGLSGGQQQRLCIARALAMQPEVVLMDEPTSALDPTASSKIEELVHELKKD
                     LTIIIVTHNMQQAARVSDYTAFMYLGELIEHGPTKQIFENPKKELTERYISGKFG"
     gene            complement(1575..>2574)
                     /gene="pstA"
                     /locus_tag="VNB68_03900"
     CDS             complement(1575..>2574)
                     /gene="pstA"
                     /locus_tag="VNB68_03900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HVD36524.1"
                     /translation="FDHDNQYFRHLIRFKDDKGQPRCERMTSSKRGTERHDHKQELQD
                     IMLKYSARRRFMDKIVTIFVIVCIVAAIIPLASILVEVIKNGVSAISMEFLTQPPGSL
                     MSGRGGIGPAIQGTLIVVGLASLIGAPIGVLAGIYLSEFAGNGIFPSVVRLFNDVLTG
                     LPSIVVGIVGYIVLVLTIGSFSVWAGALSLSIIMIPIVVRVTEETIKIVPNSIREAGH
                     SLGIPKWKITLYIVLKSAKSGVLTGIILSISRIAGETAPLIMTILGTSLFFSSLTGPV
                     DALPLRIWRLASQPYESAHAAGWGAALILVTMFLALSISLRILAQKKGFTVTRTTI"
BASE COUNT          746 a          541 c          474 g          813 t
ORIGIN      
        1 agtctaacaa tgtttattct tacgctataa taattcagat atactggtca tcagatcttt
       61 attgcaaacc ttaactatta ctgctttgaa tagaaatcat aatggccgct gctaaaaagg
      121 tcagtgctac taccaaagaa caaaagttcg agtgtaacgt atgcaaaaag gtctttgaga
      181 gtttgtacat catgaactac cacaagctat tagaacatag tgaatctaaa agaccaccaa
      241 taggagttgg ctaattagcc tgttgatcac aatctgagct atttttcttc tagaggcttg
      301 tctaaataat atatgcttta atctgagaca tcgaaatgaa gattgtttcc ttcgctttga
      361 caacactgac tatcagatac tagatttgat ctgttgtgat aacagttgaa acatgaggaa
      421 gttgcagtat cgaatagtca ccttctgatt ttggacctca aattagttca aaaaagttga
      481 tagtccatga tgatgatatt cttcttcttt taatttttaa acgcggatta gtggcctccg
      541 agttaatgat aagctgggca tgggagtgaa gcttccttcc aagagccgat ataacatatt
      601 atgtataagt attacatatt tgatcgattc caagatctaa aagcctagtc agaatgatag
      661 aactcgggta ttatccgaat ttacctgata tataacgctc cgttaattct tttttgggat
      721 tttcaaaaat ctgctttgta ggtccatgct caatcaattc tccaagatac atgaaagcag
      781 tatagtctga aactctagcc gcttgttgca tattgtgagt tactattatt attgtaagat
      841 cttttttcaa ttcatggacg agttcctcta ttttagatga cgccgttgga tcaagagcag
      901 atgtaggttc atccataagt actacttcag gttgcatggc gagtgctctt gcaatgcaga
      961 ggcgctgctg ctgacctcct gataatccca cccccggttt atccagttca ttttttactt
     1021 cttccaagag ggcagcacct tctaagcttt ccttgacaat atcatgaatc attttcttgt
     1081 ctttgacacc attaagcttt agccctgctg ctacattatc ataaatactc atcgttggaa
     1141 aagggttggg tttttgaaat accattccaa tacgtctttt gatgattaca ggatctacct
     1201 ttttatcata aatattgata ccatctagta taacctggcc tttagcatat gctcccggtg
     1261 tcatctcgtg catacgattt aggcatcgaa tcagagttgt cttaccgcat cctgacggcc
     1321 caatgaaagc ggtaaccgaa ttctctttaa catctaaatt gatgttcttc aaggcttgtt
     1381 tagctccaaa cgaggcatca agcctcctga tagatacctt gtaattaggc tctgtgactg
     1441 cctccaagga tttagtcaga atgttctcgg taatttcctt actactactc aaaaccaaac
     1501 tgccttgtca cccatttgtt caggtatcaa actaattatt ccttgtctat atggataata
     1561 tagaagcata tagactagat agttgtcctc gtcacagtaa atcccttttt ctgcgctaga
     1621 atcctcaggc ttatacttaa agcaagaaac atagtcacga gtatgagcgc tgctccccag
     1681 cctgctgcat gagcagattc gtatggctgt gaagccaatc tccatattct aagaggaagt
     1741 gcgtcaactg ggcctgttag actgctgaaa aaaaggctag ttcctaatat tgtcataata
     1801 agtggtgcag tttctccagc tattctggat atagataata ttattcctgt aagaactcca
     1861 ctttttgcac tttttaagac tatgtatagc gtaattttcc atttcggtat cccaagggaa
     1921 tgccctgctt cgcgaattga gttgggaaca attttgattg tctcctccgt aactctgaca
     1981 acaataggta tcataattat tgataaagag agggcgcctg cccaaactga aaatgagcct
     2041 atggtaagga caagtactat gtatcctact attccgacta ctattgacgg caaaccagta
     2101 agaacatcgt tgaacaatct aactacagat gggaagatac cgttacctgc aaattctgat
     2161 aagtaaatcc ctgcgagtac tcctattggt gctcctatca atgatgccaa tccgactaca
     2221 atcaaggttc cctgaatagc aggaccaata cccccgcgcc ctgacattaa ggacccaggt
     2281 ggctgggtta agaactccat actgatagcc gacaccccat tctttattac ttctaccaag
     2341 atacttgcca atggaattat agcggctacg atgcacacta ttacaaaaat ggtaacgatc
     2401 ttgtccatga atctgcgtct agcggagtac tttaacatta tgtcctgtaa ttcctgttta
     2461 tgatcatgtc gctctgttcc tctcttagac gacgtcattc tttcacacct gggctgacct
     2521 ttatcatcct tgaaacgaat aaggtggcgg aaatattgat tatcatggtc aaaa
//
LOCUS       DATLQL010000373         4521 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1515558, whole genome shotgun sequence.
ACCESSION   DATLQL010000373 DATLQL010000000
VERSION     DATLQL010000373.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4521)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4521)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4521
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1515558"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..898
                     /gene="nadC"
                     /locus_tag="VNB68_03905"
     CDS             <1..898
                     /gene="nadC"
                     /locus_tag="VNB68_03905"
                     /EC_number="2.4.2.19"
                     /inference="COORDINATES: protein motif:HMM:TIGR00078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004514 - nicotinate-nucleotide
                     diphosphorylase (carboxylating) activity [Evidence IEA];
                     GO_process: GO:0019363 - pyridine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="carboxylating nicotinate-nucleotide
                     diphosphorylase"
                     /protein_id="HVD36525.1"
                     /translation="GILNRREDSPSFRIYLNERKALLNFLREDIGRGDITSNSVLKPN
                     LLASSTILCKDSEQAVVAGLREVGIVFDLCKCSCTALVDEGSMVSRGNEVMRIKGRAR
                     DILKAERTALNLLMRMSGIATETKKFVEVVKKISKDIEIAGTRKTAPGLRSFDKKAIK
                     IGGGRTHRNSLDEMVLIKDNHLVLTGSIGESISSAKKLVGNNIKVECEVTDLQSAIEA
                     INFGADVIMLDNFSPQEVENATRVLKELGLRQKCLLEISGGISLANVSQFAKSNPDII
                     SVGSLTHSVKSVDFSLEVDSCC"
     gene            complement(958..1908)
                     /gene="nadA"
                     /locus_tag="VNB68_03910"
     CDS             complement(958..1908)
                     /gene="nadA"
                     /locus_tag="VNB68_03910"
                     /EC_number="2.5.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008987 - quinolinate synthetase A
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="quinolinate synthase NadA"
                     /protein_id="HVD36526.1"
                     /translation="MKLAQVGYAEQIQSLKKEMNAIILAHNYQLPEVQDAADFIGDSL
                     ALSRQAAETNADIIVFCGVHFMAETASILCPDKKVLIPDLQAGCSLASTINADELISW
                     KKEHPDAVIVSYVNTTAEVKALSDYCCTSSNAVKVVESIPKEREILFLPDFFLGSYVA
                     KVTGRSKMFIWPGECHVHAGIKAEDINDKMQRFASAEFLIHPECGCTSSTLYHMSTGE
                     IDVNAHILSTDGMMRHVRESNANQFVVATETGILHRMKRENPDKAFIPVKEEAVCKYM
                     KMITLEKVVNSLMKKRYEVKVQDHIAEKARKSILRMMAVS"
     gene            2073..2255
                     /locus_tag="VNB68_03915"
     CDS             2073..2255
                     /locus_tag="VNB68_03915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S30e"
                     /protein_id="HVD36527.1"
                     /translation="MPTHGSLTKAGKVRGQTPKIEAKPRASPISKIRNKNNYIKRFEK
                     RRQPGQKKPERRPRRY"
     gene            2340..3179
                     /gene="nadX"
                     /locus_tag="VNB68_03920"
     CDS             2340..3179
                     /gene="nadX"
                     /locus_tag="VNB68_03920"
                     /EC_number="1.4.1.21"
                     /inference="COORDINATES: protein motif:HMM:NF009828.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate dehydrogenase"
                     /protein_id="HVD36528.1"
                     /translation="MNTLIALIGCGSIGTEIIKSIKNGEIPHAKVVAIVDTREHAVEE
                     VLGKLNIHDIQIFSDFQDFLSSSLFSFVDIIVEAASQMAVRNYGKKILEFGKKFLVLS
                     TGVFADRILLTEFVTLADEKNAKIVIPTGAIAGIDMIRSVKKNLTSLSITTTKNPVAL
                     SGAPFFNSSKIKSETIATKTLLYEGSAEDAILMFPANVNVAVTLALAGIGLKRTLVRV
                     IADPDIKINQHEILASGNFGDIHIIVRNNPMVENPRTSMLAALSAIESLRSLCNDTFR
                     IGS"
     gene            3271..3555
                     /locus_tag="VNB68_03925"
     CDS             3271..3555
                     /locus_tag="VNB68_03925"
                     /inference="COORDINATES: protein motif:HMM:NF014047.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAM domain-containing protein"
                     /protein_id="HVD36529.1"
                     /translation="MFGPKPVESGKEYDVQVTEISRKGDGIARIQGFVIFVKDGKVGQ
                     NAKIRVTQVGNRFATAEIVDGSSATEASSQPSEQQSSSSESSEASPESNE"
     gene            3801..4184
                     /locus_tag="VNB68_03930"
     CDS             3801..4184
                     /locus_tag="VNB68_03930"
                     /inference="COORDINATES: protein motif:HMM:NF024864.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupredoxin domain-containing protein"
                     /protein_id="HVD36530.1"
                     /translation="MKNNIIAIVAISFTVVGTMWAVSNLISSNDTIKTLKNAGIILVA
                     KDNLFNSTNPDIHAKTNIPLRITIVNKDFTKHDFIIDELNVNTGYLSSDQDFTTAIAS
                     NNSGIYQYYCSFHPATMHGRILVDD"
BASE COUNT         1443 a          836 c          906 g         1336 t
ORIGIN      
        1 aggtatcttg aaccgacgcg aggattctcc gtcatttagg atttatttaa acgaaagaaa
       61 agctttactt aactttctta gagaagacat tggccgtgga gacattacaa gcaattcagt
      121 tcttaagcca aatttactag cgtcatcaac gatactttgc aaggactccg aacaggcagt
      181 agtagcaggt ttaagggagg ttggaatagt atttgatttg tgcaaatgtt cgtgcacggc
      241 attggttgat gagggttcta tggttagtcg tggcaacgaa gtaatgagaa ttaaaggccg
      301 agctagagac attctcaagg cagaaagaac agcattaaat ctacttatga gaatgagtgg
      361 aatagctaca gaaacaaaga aatttgttga ggtggtcaag aaaatttcta aagatattga
      421 gatagctggt actcgaaaaa cagcaccggg tttaagatct tttgacaaaa aagcgataaa
      481 aattggaggc ggaagaactc acagaaattc actggacgaa atggtcctta tcaaagacaa
      541 ccatctggtt ctaacaggtt ccataggaga gtcaatctcg agtgcaaaaa aattggtcgg
      601 taacaatatc aaggtggaat gtgaggtaac ggatcttcaa tcagctatag aagcaattaa
      661 tttcggagct gatgtcataa tgcttgataa cttctcacca caagaagttg agaatgctac
      721 tagagtcttg aaggaattgg gattaagaca aaaatgtttg cttgaaattt ccgggggaat
      781 aagcttggcc aatgtatctc aatttgcaaa gtcaaatccg gatataatct ctgttggctc
      841 gttaactcac tccgttaaat ctgttgactt ttcactcgag gttgattctt gttgttgaaa
      901 gaattaacac cgcctttttt tgatttgaac taaacccaga agatgaattt taccaaatta
      961 ggaaactgcc atcatacgta gtattgattt tctagccttc tccgcgatat gatcttgaac
     1021 tttcacttca tatctttttt tcatcaaaga attcactact ttttctaatg ttatcatttt
     1081 catatactta caaactgctt cctcctttac aggaatgaat gctttatcag gattttccct
     1141 tttcattcta tgtaatatac cagtctctgt agccaccaca aattgatttg cgttagattc
     1201 tctcacatgt cgcatcattc catctgtaga cagaatatga gcatttacgt cgatctcccc
     1261 agtcgacatg tggtaaagtg tggaggaagt acagccgcat tctggatgta ttagaaattc
     1321 tgcggacgca aacctctgca tcttatcatt gatatcttca gctttgatgc cagcatgcac
     1381 atgacattct ccaggccaaa taaacatctt acttcgtcca gtcacttttg ctacatagga
     1441 tcctagaaaa aagtcgggta aaaacaatat ctcacgttct tttggtatac tttcaactac
     1501 cttgacagca tttgaagatg tgcaacagta atcagacaat gctttgactt cagcggtagt
     1561 attcacgtag ctgacaataa cggcgtccgg atgttccttt ttccaagata taagctcatc
     1621 agcgttgata gttgaggcca gcgagcagcc tgcctggagg tctggaatca aaaccttttt
     1681 gtcgggacaa agtatggaag cagtctcggc cataaagtgg actccacaaa aaacaataat
     1741 gtccgcatta gtttccgcag cctgtcttga caatgctaac gagtcaccga taaaatcagc
     1801 tgcatcttgc acttctggca actgatagtt atgtgctaga atgattgcgt tcatttcctt
     1861 cttgagagat tgtatctgct cagcatatcc cacttgtgca agtttcatca aagctaatgt
     1921 tctaactctt actagagatt taaattagta taatttagga gatagttgcc ttgttggagt
     1981 aaattggggc aatacttgcc atattggatt tcctaataat ttgtatattt aattccggaa
     2041 tagatatatt ataatcacag tactagaagg tcatgccgac acatggctca ttaacaaaag
     2101 caggtaaagt tagaggtcag actccaaaaa tcgaagcaaa acccagggct agccccattt
     2161 caaaaattcg aaataagaat aattatatca agaggtttga aaagagacgt cagcctggac
     2221 aaaagaaacc tgagcgccgg ccaagacgct attagcgttt tgtctaagca agaattggga
     2281 tctacttgtc cattttcgat cttatgctgc tgcccataga tcaaatgttg taagctttta
     2341 tgaacacact aatcgcgcta ataggttgcg gttcgatagg tactgaaatt ataaagtcaa
     2401 tcaagaatgg tgaaatcccg catgcaaaag ttgtagccat tgtagatacg agagagcacg
     2461 cggtagaaga agtcctaggc aaactgaaca ttcatgatat tcagatcttt tccgatttcc
     2521 aagatttcct tagttcctct ctcttttcgt ttgtcgacat aatagtggaa gcagcttctc
     2581 aaatggcagt cagaaactac ggtaagaaaa tccttgaatt tggaaaaaaa ttcttagttc
     2641 tgagcactgg cgtatttgcc gatcgaatac ttctcacgga atttgtaacc ttagccgatg
     2701 agaaaaacgc caagattgtg atacctaccg gtgctatcgc aggaatagat atgattagaa
     2761 gtgtaaaaaa gaatttgaca agtcttagca taacgacaac caagaatcca gtagcattat
     2821 ctggtgcacc attctttaac tcatctaaaa taaaatctga aacaattgct acaaaaacac
     2881 tgctttatga gggatcggca gaagatgcca ttttgatgtt tcctgcaaac gtaaacgtgg
     2941 ctgttactct tgccctagca ggcattggtt taaagagaac acttgttaga gtgattgctg
     3001 atccagacat aaagatcaac cagcacgaga ttcttgcatc gggaaatttt ggtgatatcc
     3061 acattattgt ccgcaataat cctatggttg aaaatccgag aactagtatg cttgctgccc
     3121 tttctgcgat agaaagtctt cgtagtctgt gcaatgatac ctttaggata ggatcctgat
     3181 atgcaaaaat attgacagtt tatattaggt cggtagaatg acattcataa ggtataaagt
     3241 atgagttacg gtggttatag aaggaacgac atgtttggtc caaaacccgt tgagtcaggt
     3301 aaggaatatg atgtgcaagt tacggaaata agcagaaaag gagacggcat tgcgaggata
     3361 caaggatttg taatttttgt taaagatgga aaggttggac agaatgcgaa gatacgtgtt
     3421 acgcaagttg gtaacagatt cgcaactgct gaaattgttg atggaagttc tgcaactgag
     3481 gcaagttctc agccatcaga gcaacagtca tcgtccagtg aatcatctga ggcatcgcct
     3541 gaatcaaatg aataagaacg cagaattcat gatactttct gtgcattcaa attagatcaa
     3601 aataccatta attttagccc tcaactatca tttttattta tattattatc ggaattagca
     3661 tttaaatctc atctttgtgg aatgccagac aatagttgtg gtgctcgcaa tttaaggtga
     3721 cattcttcaa caatttattt ctggggatcg catatcaaaa gagggaatag aatttagaac
     3781 tggtgcaccc gtttcaagac atgaagaata atatcatcgc gatcgtagcg atatctttta
     3841 ccgttgtagg taccatgtgg gcagtaagta atcttatctc atcaaatgat acaataaaga
     3901 ctctaaaaaa cgcaggcatt atactggtcg cgaaagacaa cttgttcaat tctacgaatc
     3961 cagacataca cgcgaagaca aacataccac taagaataac gattgttaac aaggacttca
     4021 caaaacacga ctttataata gatgaattga atgtgaatac aggatactta tccagcgatc
     4081 aagattttac tactgctatt gctagtaaca attctggaat ttatcaatat tactgttcgt
     4141 ttcatcccgc tacaatgcac ggtagaatct tagttgatga ctgaaaaaac ttgaatcttg
     4201 gtcattaata gcttaaagtg atggtagcat ttatcatcat aaggcaagag aatggatctc
     4261 cgaaataccg gcttcgttct gctgtttgct gtaataagga ttattctttc accaaacttg
     4321 gagctgtatc atgaattaga ttaaaattaa cctagattta gttttgtaaa ttgcaagggt
     4381 acgctcacta tctaatcgtt tctatccgtt gacataatac aaggaattct catgtttacg
     4441 aaattagagt tgcacctcaa tcaattatat ggaaattcac actcaccatg tgatccacgc
     4501 ggacctacct tgatttgttg a
//
LOCUS       DATLQL010000374         1320 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2577983, whole genome shotgun sequence.
ACCESSION   DATLQL010000374 DATLQL010000000
VERSION     DATLQL010000374.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1320)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1320)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1320
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2577983"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            171..>1320
                     /gene="radA"
                     /locus_tag="VNB68_03935"
     CDS             171..>1320
                     /gene="radA"
                     /locus_tag="VNB68_03935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair and recombination protein RadA"
                     /protein_id="HVD36531.1"
                     /translation="MNSTNHSQVEMDNTFKKGKTDNIVSPDDKVPENLSSETRINVGE
                     DEESSKTETTELAGTTELLDLEIQDIEGIGPSTTKKLREAGILSVMDLAVAGVEDLAV
                     DINSTKDSAASFIMAAQKLLRESNILEKEFITAEAALRKRRSLLRCSTGSGVLDELFL
                     GGIETQAVTEFYGEFGSGKSQICHTLCITAGQPVESGGLDSGVIYVDTEGTFRPERLE
                     QIARERGVDPLHALKNVAVCKVYNSAHLELIVKNLGKYVDDYKAKLVIIDSIISLHRA
                     EFAGRGTLADRQQRLNSIMHKLLRIAEIYNIALVVTNQVQSAPDTFFGDPTRPTGGNV
                     IGHASTYRVYLKKSGENRIARMVDSPYHPYGDVRFTVNEKGVDDLEEEL"
BASE COUNT          468 a          218 c          289 g          345 t
ORIGIN      
        1 aaaaaaattg cttattggta tttgtagtgt gtagaatgtt aagtagtcaa taagacaaat
       61 cacaagtaaa ataaaagaaa ggcatgccct cccccgctcc catattggtg ccctaagtct
      121 taaatgcatt gaaacttaac atcatttata atatgggcga taaaaaatct gtgaattcaa
      181 ccaaccacag tcaggtagaa atggacaata cgttcaaaaa aggtaaaaca gacaatatag
      241 tcagccctga tgacaaagtt ccagaaaatt tgtcgtcaga gacaagaatt aacgttggtg
      301 aggatgaaga atcatcaaag acagaaacca ccgagttagc cggtacgaca gaacttctgg
      361 acttggaaat tcaagatatt gaaggtatag gtccatctac tactaagaag ctgcgggagg
      421 ctggaatttt gtcagttatg gatttagcag tggctggtgt tgaagaccta gctgtagata
      481 tcaattccac aaaggatagc gctgcatcat tcataatggc agcgcaaaag ctattaagag
      541 aatcaaatat tttagagaaa gaattcatta cagccgaagc agcgcttagg aaaagaagat
      601 cgttattaag atgttctact ggttccggag ttttagatga gctttttcta ggaggaatag
      661 aaacccaagc agttacggaa ttttatggag aattcggatc agggaaatca cagatctgtc
      721 acactttatg tataactgct ggacaaccag tagaatcagg tggacttgac agtggtgtaa
      781 tatatgtcga cactgaaggt acatttagac ctgaaagatt agagcagata gcccgagaaa
      841 gaggtgtgga cccattacat gcattaaaaa atgttgcagt atgtaaagtc tataacagtg
      901 cacatctaga gttgatagtc aagaacctag gtaaatatgt tgatgattat aaagcaaaat
      961 tagttattat tgacagcata atttcattgc atagagctga gttcgctgga aggggaacac
     1021 ttgctgatag acaacaaaga cttaattcta tcatgcacaa gcttcttaga atagctgaaa
     1081 tttacaatat agcattagtg gtcaccaacc aggtccaatc tgctccagat acattctttg
     1141 gtgatccaac tagacccacc ggtggcaatg taataggaca tgcatcgaca tatagagtat
     1201 atttgaagaa atctggtgag aatagaattg caaggatggt cgattcacca tatcatccat
     1261 acggagatgt tagattcacc gttaatgaaa agggagtaga tgatctcgaa gaagagctta
//
LOCUS       DATLQL010000375         2357 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_450304, whole genome shotgun sequence.
ACCESSION   DATLQL010000375 DATLQL010000000
VERSION     DATLQL010000375.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2357)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2357)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2357
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_450304"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(140..754)
                     /locus_tag="VNB68_03940"
     CDS             complement(140..754)
                     /locus_tag="VNB68_03940"
                     /inference="COORDINATES: protein motif:HMM:NF012451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ domain-containing protein"
                     /protein_id="HVD36532.1"
                     /translation="MDSRGYYAILEVSERASFQEIKRSYRKLARKYHPDRNDASEAEE
                     TIKKINQAFEVLSNKEKRRQYDSDILLTEFVPNDQEQTPNDLHESSSIGSQNSSAGYF
                     KHSNTFWNKASNNATDSTRTMLDTPRSRFHITIEPSLCLAFGGCESIAPRVFVVDKNK
                     RINPKAKVESETGDDLERILLAAQACPTKAIKIIDRYTGDQLYP"
     gene            951..1568
                     /locus_tag="VNB68_03945"
     CDS             951..1568
                     /locus_tag="VNB68_03945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36533.1"
                     /translation="MTVSVIIAITPSVSNLATWAQANKDVTSSDGENLQYVIYENSTF
                     GIRIEFPRQWEFEVAENLSENPLRVVYFYNNPADLLGDFVIEIEKLGSLDSIGDYVGN
                     TINQYSQSAPEFKLLSMSTNDKLGGLRAYSILYSERYNSTSFLKTLEVGTIRGSQVYF
                     IQFYALADHFEGNLPIAKKMINSIEFINAGYGQSSQSYGPVNSDH"
     gene            1581..1961
                     /locus_tag="VNB68_03950"
     CDS             1581..1961
                     /locus_tag="VNB68_03950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36534.1"
                     /translation="MIVLNNSTVDFSQEKYQLQIPLIHVENGDGKTIHRHASNLQFLH
                     FLNSLGMNIIRDCFILDNGTKYCGNDKAKLKFFLNGNQVSSISNYVIRQGDEILVIYG
                     NDSPRDINNRLIMLNPSVKPLFPH"
     gene            2075..2311
                     /locus_tag="VNB68_03955"
     CDS             2075..2311
                     /locus_tag="VNB68_03955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36535.1"
                     /translation="MNDQEKEKANKQWHELKNSLPAGIELLGEYDHAWGTEYNGFLLF
                     EAETSDMFLDWWAGFKDKVRWYVDQTHTIVARRR"
BASE COUNT          706 a          429 c          463 g          759 t
ORIGIN      
        1 catagaaaat gggattgatg tagtctataa tagatgtatg atggccgaac atatgagatt
       61 atttcctgaa taatttcttt tgttggcttc aagacacgaa ccaggatatt acgttggacg
      121 catcttatct agatttttgt caaggatata gctgatctcc agtatatcta tctattattt
      181 tgatagcttt tgtcggacag gcttgagcag caaggagtat tctttctaaa tcgtcacctg
      241 tctccgactc tacttttgct ttcgggttta tgcgtttatt tttatctacc acaaatacac
      301 gaggggcgat agattcacaa ccgccaaaag ccagacacaa actgggttcg atcgtaatat
      361 gaaatcggct tctcggagta tccaacatcg ttctagtgct atccgtagca ttattgcttg
      421 ctttgttcca aaatgtattt gaatgtttga aataacctgc actcgaattt tgagagccaa
      481 ttgatgaaga ttcgtgaagg tcattcggtg tttgttcttg atcattaggt acgaactcag
      541 taagaagaat atcggaatcg tactgacgtc tcttctcttt gtttgaaaga acttcgaatg
      601 cttgattgat ttttttaata gtttcttcag cctctgatgc gtcatttcta tcaggatgat
      661 atttcctggc tagttttcta taagaccgtt ttatttcttg aaagcttgcc ctttcagata
      721 cttcaaggat agcataatag ccacgactgt ccaatcaaat caagttagac ctcgactctt
      781 acttatctct tgtctaattc aagttcaata gatatactct ctcttttgat ctagtataaa
      841 attactcaga atcttcaacc atgaagacca caacttaagt aggaggcttt tagcataggt
      901 caatagaatg ccattcaccg tgctctttgg tttttctgtt gtgatccttt ttgacagtat
      961 ctgttattat cgcgattaca ccctcagtta gtaaccttgc tacttgggcc caggcaaata
     1021 aagacgtcac atcatctgat ggtgagaatc tacaatatgt aatctatgag aactcaacat
     1081 ttggaattcg aattgaattt cctagacagt gggaatttga agttgcagaa aacctatctg
     1141 aaaaccctct aagggtggtt tatttttata acaatcctgc tgatcttctt ggtgatttcg
     1201 tgatcgaaat agaaaaattg ggcagtcttg atagcattgg tgattatgtt ggaaacacca
     1261 taaatcagta cagtcaaagt gctcccgaat tcaagttact ttctatgtcc actaacgata
     1321 aactcggcgg attgcgggcc tactcaattt tgtacagcga aaggtataac tccacaagtt
     1381 tcttgaagac acttgaagtc gggacgattc gaggaagtca agtatatttc atacaatttt
     1441 acgctcttgc agatcatttt gaagggaatc tcccaatcgc gaaaaaaatg ataaactcga
     1501 tcgaatttat taatgcgggt tatggtcaat catctcaatc ttacggtcct gtcaactctg
     1561 atcactagca tgcaacattt gtgatagtcc ttaacaactc aacagttgac ttttctcagg
     1621 aaaaatatca acttcaaatc ccattgattc acgtcgaaaa tggggatggt aaaactattc
     1681 acaggcatgc atccaattta cagtttttac actttttgaa cagtttgggc atgaacataa
     1741 ttcgtgattg ctttatcctc gataatggaa caaagtattg tggcaatgac aaagcaaaac
     1801 taaaattctt cttgaatgga aatcaagtga gttcaataag taattatgtc ataagacagg
     1861 gagatgagat tttagtaatc tatggtaacg attctccacg ggatataaac aatagactca
     1921 ttatgctgaa tccatcagtc aaacctctct ttccccatta gtgcatagtt tcttctgctc
     1981 tcaaattcgt aatgcgaaga tagattaata cgttagatcg gaatcataag tagatatgac
     2041 ttcaaccatg ctggtgtttt ataggtttag atcgatgaat gaccaagaga aggagaaggc
     2101 taacaagcaa tggcacgaac tgaaaaatag tcttcctgct ggtatcgaat tacttggaga
     2161 gtatgatcat gcttggggga cggagtataa cggtttcttg ctatttgaag cggaaactag
     2221 cgatatgttt ttggactggt gggctggttt taaggacaag gttagatggt atgttgatca
     2281 gacacatacg atagttgcaa gaagacgtta gaaacatact ggtaaacgtg tcaaaacaat
     2341 gccttagtag gatctga
//
LOCUS       DATLQL010000376         1291 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_627082, whole genome shotgun sequence.
ACCESSION   DATLQL010000376 DATLQL010000000
VERSION     DATLQL010000376.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1291)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1291)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1291
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_627082"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..350)
                     /locus_tag="VNB68_03960"
     CDS             complement(<1..350)
                     /locus_tag="VNB68_03960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36536.1"
                     /translation="MFAGKFLLVLLFFLCMSLTTSSITASTSQKSSLEGSQLIGSNDT
                     STVNGEALQTRDINSSQDDSLSILNATLKGMVPLGKGKPLSIAINPSINTLYVISPSE
                     LDGKLQNVIHVIDGA"
     gene            745..>1291
                     /locus_tag="VNB68_03965"
     CDS             745..>1291
                     /locus_tag="VNB68_03965"
                     /inference="COORDINATES: protein motif:HMM:NF012573.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36537.1"
                     /translation="MSHHNIILIGLLFLSLIPTGLHIRWVWAISSQGIAQNDTDVDGR
                     VNETKRIDMTNNTRNQNENNIIEGGSGIDALNGTNVEDMLSGGGGSDIIYGNGGSDEL
                     DGGAGPDKLFGGNGSDVLFGGIGNDNLQGDDGNDDLYGGPGADVLTGGQGPDDFDCGT
                     GVDRIVDYNTTQGDIKSFNCEM"
BASE COUNT          412 a          210 c          292 g          377 t
ORIGIN      
        1 gctccgtcaa taacatgaat cacattttgc agtttgccat ccaattccga tggcgatata
       61 acatacaggg tattgatact aggatttatt gcaatagata gcggttttcc tttgcccaat
      121 gggaccatgc ctttcaatgt ggcatttaga atcgagagac tatcatcttg cgagctgttg
      181 atgtccctag tctgaagtgc ttcaccatta acagtactcg tatcgttgct gccgataagt
      241 tgtgacccct ccaaagacga cttttgagag gtactagcag tgattgacga agtagtcaag
      301 gacatgcata agaagaataa taataccaac aagaatttgc ctgcaaacat attcttccgt
      361 atgataacta aactaattaa atatatagaa acttgttaat aggaaattct tgtatagaca
      421 gatgatttgg attgtgcaat aaaggatagg gcaggcttag aagctcgaaa taagaaattt
      481 tctcctgaat attaattacc tggatttgca gatcttcgcc taacaaaatt tgtatgatcc
      541 agccttatcg acaaaacatt acagcatacg aatgcacaaa tacaacccaa ttgactaacc
      601 gaggattttt tgttctgaat gttaacctct atcattacac tacaatgaga tgggttcttg
      661 atgtcacgct attttcatat ttaggaaggc ttagattggt gaatgcttta aatttcaata
      721 tgtataaaga aggtaataat tatcatgtcg catcataata tcattttgat aggtttactt
      781 ttcctgagtc tgatcccaac tggtttacat ataaggtggg tctgggctat ttcgtctcaa
      841 ggaattgcac aaaacgacac tgatgttgat ggacgagtaa acgagacgaa gagaattgat
      901 atgaccaata atactaggaa tcaaaatgaa aataatataa tagaaggagg tagtggaatt
      961 gatgctctga acgggacaaa cgtcgaggac atgttatctg gtgggggtgg ttcagacatc
     1021 atttatggga atggaggaag tgatgaactt gatggtggag caggacccga caagttgttc
     1081 ggaggaaatg gcagtgatgt attattcgga ggaataggca atgacaatct tcaaggcgat
     1141 gatggaaatg atgatttgta cggaggccca ggtgctgatg tcttaactgg aggccaaggt
     1201 cccgatgatt tcgattgtgg cactggagtt gatagaatag tagactataa tacgactcag
     1261 ggggatatca agtcatttaa ctgtgaaatg t
//
LOCUS       DATLQL010000377         1319 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_271886, whole genome shotgun sequence.
ACCESSION   DATLQL010000377 DATLQL010000000
VERSION     DATLQL010000377.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1319)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1319)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1319
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_271886"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            195..1301
                     /gene="metK"
                     /locus_tag="VNB68_03970"
     CDS             195..1301
                     /gene="metK"
                     /locus_tag="VNB68_03970"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004478 - methionine adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006556 - S-adenosylmethionine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HVD36538.1"
                     /translation="MARRYLFTSESVTEGHPDKICDQVSDSILDEIISQDPDSRVAVE
                     AMTTTGIVIVAGEVTSTAKFDAQDVVRRTVRNIGYDGLKHGFDGNSCAVLTSIHEQSP
                     DISMGVSKNEDGVQGAGDQGLMFGYATSETPEFMPLPITLAHKLTMRLAAVRKEGTLD
                     WIGPDGKSQVSVIYEDAVPKKIDTVVVSTQHTEDVSISQVREEIISKVIKPICDDLIN
                     NSTKFLVNPTGRFVIGGPVGDTGLTGRKIIADTYGGMGRHGGGAFSGKDPSKVDRSAC
                     YMARYIAKNIVSSGLASKCEVQLAYAIGVAEPVSIMVDTFNTGKINEEKIESQVREIF
                     DTTPLGIIETLLLKRPIYKKTAAYGHFGINDPDF"
BASE COUNT          449 a          205 c          310 g          355 t
ORIGIN      
        1 tggagtacag gggtagaatg aacaatgtgg attcatacat gaatttaata ctactggatg
       61 ccgaagaatt taatggtgca aatcctgttg caaattatgg gaaagtagta attcgaggaa
      121 acaatgtgtt atttatcaaa atagaaaagg atctctaata agggagactt ttttgggatt
      181 tgacgtaagc aaaaatggct aggcgctatc ttttcacttc agaaagtgta accgaaggac
      241 atcctgacaa gatttgcgac caagtttctg attcaatact tgatgaaata atttcccagg
      301 atcctgattc cagggttgcg gtggaagcca tgactactac cggaatagtg attgtagctg
      361 gcgaagtgac gtccacagca aaatttgatg ctcaggacgt tgttagaaga actgtaagaa
      421 atatcgggta cgatggacta aaacatggat ttgacggaaa cagctgtgct gttctaactt
      481 caatccatga acaaagccca gacatttcaa tgggtgtttc taaaaatgag gatggagttc
      541 agggagcagg agatcaagga ttaatgtttg gatatgcaac aagcgaaacc cccgaattta
      601 tgccattacc cataactttg gcccacaaat tgactatgag attagcagcg gtaagaaagg
      661 aaggaacttt agattggata ggaccagacg gaaaatctca ggtatctgtt atttatgaag
      721 atgcggttcc aaagaaaatt gacacagttg tcgtttcgac tcagcatacg gaagatgtat
      781 caatatctca ggtgagagaa gagattattt caaaggtaat aaaaccaatt tgtgacgatc
      841 taatcaataa ttctactaag tttcttgtaa atccgacagg aagatttgtt ataggcggtc
      901 ctgtgggcga taccggcttg actggccgaa agattatagc tgacacttat ggaggtatgg
      961 gcagacatgg aggaggagca ttttcaggaa aggatccttc aaaggtggat agatctgctt
     1021 gctatatggc aagatatata gcaaaaaata ttgtttcatc aggtctggct tcaaaatgcg
     1081 aagtacaact ggcgtatgca ataggagtgg ctgaacctgt ttccatcatg gtagatacat
     1141 ttaacactgg aaaaattaat gaagaaaaaa ttgaaagtca agttagagag atttttgata
     1201 ctacgcctct aggaataata gagacattac tattgaaaag acccatatat aagaaaactg
     1261 cagcgtatgg tcattttggg ataaacgatc ctgattttta atgggagaaa actgacaaa
//
LOCUS       DATLQL010000378         1275 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2406009, whole genome shotgun sequence.
ACCESSION   DATLQL010000378 DATLQL010000000
VERSION     DATLQL010000378.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1275)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1275)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1275
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2406009"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..801)
                     /locus_tag="VNB68_03975"
     CDS             complement(<1..801)
                     /locus_tag="VNB68_03975"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HVD36539.1"
                     /translation="MYDVVIIGGGPGGYTCAIRAAQLGGNVCLIEKNGLGGTCTQRGC
                     IPTKYLHSMGDLVRRMTMANRYGINAKIELDYKLLVSKMQATVSRLASGIKLLLKSNG
                     IDVIEGEGHVVSKTKITVNQTMVDTRNIVIATGTYPVCLPNLDFGGNILSTTSILELG
                     YLPSSITIVGAGYSGCEFASVLNVLGSKITLIEAEDHIMPNQIQEIGNTLEKYMTLDG
                     IDVRTRSKVDNIVKNIVEVNGEKIESEKILVCTGRRPNINRQELDNIGV"
     gene            complement(870..>1275)
                     /locus_tag="VNB68_03980"
     CDS             complement(870..>1275)
                     /locus_tag="VNB68_03980"
                     /inference="COORDINATES: protein motif:HMM:NF015084.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="biotin/lipoate A/B protein ligase family
                     protein"
                     /protein_id="HVD36540.1"
                     /translation="PVVLCLNSLGYNAKYVPLNDIVVDNKKVSGNAQTRKNNTLLQHG
                     TILLAVDVEKMFSMLKVPSEKIKDKMIKDVKARVTGINRSFEEVASNLKESFTKIFDA
                     QIIIDTLSSKEKKDTEKFVIEKYSTRQWNWRK"
BASE COUNT          339 a          283 c          190 g          463 t
ORIGIN      
        1 tacaccgatg ttatcaagct cctgacgatt tatgttgggc ctcctgcctg tacaaacaag
       61 aattttctca gattcaattt tctctccatt tacttctact atattcttga ctatattgtc
      121 aacttttgat cttgtcctta catctatccc atcaagtgtc atgtactttt ctaacgtatt
      181 tccaatttcc tgaatttgat taggcattat atgatcttcg gcctcgatta aagtaatttt
      241 ggatcctaat acatttaata ctgacgcaaa ttcacatccg ctgtaaccag cacctacaat
      301 ggttattgag ctaggcaaat aacctaattc cagaatggat gtggttgaca gtatattgcc
      361 tccaaagtcg aggttgggca gacaaacagg ataggttcct gtagcgataa cgatatttct
      421 tgtgtctacc atggtctgat tcacagttat cttagtcttt gatacaacat gtccttcacc
      481 ttcaattaca tcgataccat tacttttcaa gagaagtttg attcctgagg cgagtctgga
      541 aaccgttgcc tgcatttttg acactaaaag tttgtagtct aattcaattt tggcatttat
      601 tccgtaccta tttgccatgg tcatccttct caccaaatct cccatagaat gaagatactt
      661 cgtagggatg catcctcttt gagtacaggt tccaccaagt ccattttttt caatcaggca
      721 aacgttacca cctagttgtg ctgccctaat ggcacatgtg tatccacccg gacctcctcc
      781 tattattact acatcataca tactgcttgc actagcttct atatactagg caataagcat
      841 tttaataatc taaacacagc cactttactt tactttctcc agttccattg ccttgtagaa
      901 tatttctcaa ttacaaactt ttctgtatct ttcttttctt tgctacttaa tgtatctatg
      961 atgatttgag cgtcaaatat tttagtaaat gattctttta gattgctggc tacttcttca
     1021 aatgacctat ttattccagt caccctagct ttaacatctt ttatcatctt atccttgatc
     1081 ttttctgaag gaaccttcag catagaaaac atcttttcaa cgtctacagc tagcaagatt
     1141 gtaccatgct gaagtagtgt attatttttc ctagtctgtg cattacctga tactttcttg
     1201 ttatcaacga ctatgtcatt taacggaacg tattttgcgt tgtatccaag gctattcaga
     1261 cataatacta ctggc
//
LOCUS       DATLQL010000379         1383 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1517065, whole genome shotgun sequence.
ACCESSION   DATLQL010000379 DATLQL010000000
VERSION     DATLQL010000379.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1383)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1383)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1383
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1517065"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            221..1366
                     /gene="radA"
                     /locus_tag="VNB68_03985"
     CDS             221..1366
                     /gene="radA"
                     /locus_tag="VNB68_03985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair and recombination protein RadA"
                     /protein_id="HVD36541.1"
                     /translation="MVDRKLSSSENKESSDVGVLSTNVNEYSRTNSDIENSASSSSPS
                     TVVDIEIQDIEGVGPTTARKLKEAGIVSVMDLAVTSADELAVDLNSSKDTAATFIMAA
                     QRLLRESNILEKEFVTAESALEKRKSLMRCSTGSRALDELLLGGIETQAVTEFYGEFG
                     SGKSQICHTLAAIAPQPKEAGGLNGGVIYIDTEGTFRPERLNQIARARELEPSFVLKN
                     VAVCKVYNSSHLELIIKDLGKYVNDFNAKLVIIDSIISLHRAEFAGRGTLADRQQRLN
                     GLLHKVIRLAEIFNIAVVITNQVQSSPDTFFGDPTKAAGGNVIGHASTYRIYLRKSGE
                     NRTAKMIDSPYHPYSDAKFTLNEKGTDDLEDEISSIKKKNTKTEEQE"
BASE COUNT          475 a          227 c          276 g          405 t
ORIGIN      
        1 atcgggctat aatatgtata tagctatacc tcgtcataca atgaactcaa gaattaatgt
       61 tatagctgtt tccattatat tatattatga ttatcggcat attatgtcaa gtactgtttt
      121 atgaggaaga atttattgag gtatggatgt agactccccc tcccccgata aggctttatt
      181 atattaatat aactgtgata actgtctgat tgatatttta atggtagaca gaaaattgtc
      241 ttcctctgaa aacaaggaaa gtagtgatgt tggtgtcctc tcaactaatg ttaacgaata
      301 ctctaggaca aattcagaca ttgaaaactc agcatcatcc tcatctcctt ctacagttgt
      361 tgacattgaa attcaagata tcgaaggtgt tggacctact acagctagga agctcaaaga
      421 agcaggtatt gtttccgtaa tggaccttgc tgtaacaagt gctgatgaat tagccgttga
      481 tctcaattct tcaaaagata ctgcagctac attcataatg gcagctcagc gactgttgcg
      541 agagtctaac atacttgaaa aagaatttgt aactgctgaa tctgctcttg agaaaaggaa
      601 atcattgatg agatgttcta ctggttctcg tgcattggat gaactgttat tagggggaat
      661 agaaacacaa gctgttactg aattttatgg agagtttgga tcagggaaat cacaaatatg
      721 ccatacacta gctgcaatag cacctcaacc taaggaagca ggcgggctta atggaggcgt
      781 tatctacata gataccgagg gaacgtttag gcctgaaaga ctcaatcaga tagcaagagc
      841 aagagaactt gagccttcct ttgtattaaa aaatgtagca gtatgcaaag tttacaatag
      901 ttcgcatttg gaacttataa tcaaagatct tggtaaatat gtcaatgact ttaatgcaaa
      961 gttagtaatt atagatagta ttatctcttt acatagagca gaatttgctg gtagaggtac
     1021 acttgcagat agacaacaga gacttaatgg tctattgcac aaagttatta gactagcgga
     1081 aatattcaat atagctgttg tcataacgaa tcaagtacaa tcttctcctg atacattctt
     1141 tggagatccc acaaaagcag ctggtggaaa tgtcataggt catgcttcaa cttatagaat
     1201 atatctcaga aagtcgggtg aaaataggac agcaaagatg atagattcac catatcatcc
     1261 atattccgac gccaaattta ctctgaatga aaagggaaca gatgatttag aggatgaaat
     1321 ctcatcaata aagaagaaga atacaaaaac tgaagagcag gaataatgtg atttagtaca
     1381 ata
//
LOCUS       DATLQL010000380         3349 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1517226, whole genome shotgun sequence.
ACCESSION   DATLQL010000380 DATLQL010000000
VERSION     DATLQL010000380.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3349)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3349)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3349
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1517226"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..351
                     /locus_tag="VNB68_03990"
     CDS             <1..351
                     /locus_tag="VNB68_03990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HVD36542.1"
                     /translation="AMSILGRFMPGTFTNPSLPDYMEPEVVVVTDPQADQQAVIEATR
                     AGVPVIAISNSDNVTSKVDLVIPANNRGRKALATVYWLLAREVLKKQGKIKSDSGMPV
                     SIDDFETKLVEEIP"
     gene            348..1190
                     /locus_tag="VNB68_03995"
     CDS             348..1190
                     /locus_tag="VNB68_03995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MEMO1 family protein"
                     /protein_id="HVD36543.1"
                     /translation="MKEFERKPAVSGIFYPSKQEELLSSIKSLFLDRKFGPGNLPPSR
                     DKGKIFGLVSPHAGYVYSGAVAANGFYEISSSSFDTVVIIGPNHYGIGSDIATLEGGT
                     WITPIGNMRINEHLTHEIADNWDVVKFDSLAHSRDHCIEVQIPFLQYINKELTIVPII
                     LGKQDKSTAMALGKCLAEIIKKKNVMLIASSDLTHYESKDEAYEKDTRLISSILSINI
                     PEFYSVLHKFRVTACGYGAIGAVMAAAKEMGASTGKLLRYATSGDVIGDTASVVGYSS
                     IAFV"
     gene            1144..2208
                     /gene="mvk"
                     /locus_tag="VNB68_04000"
     CDS             1144..2208
                     /gene="mvk"
                     /locus_tag="VNB68_04000"
                     /EC_number="2.7.1.36"
                     /inference="COORDINATES: protein motif:HMM:TIGR00549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004496 - mevalonate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0016126 - sterol biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019287 - isopentenyl diphosphate
                     biosynthetic process, mevalonate pathway [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mevalonate kinase"
                     /protein_id="HVD36544.1"
                     /translation="MILLQSSDTHQSLLYEHTMNEYHMVQVHSSAPGKIILLGEHFVV
                     YKNPAILAAINRRIAVHLKPNGTQFTRVKAGRMELVVSTSKRQLSKRRTNSNSFLYPV
                     LSCIANIQYQMNDFSGLDVIIESQIPHGEGLGSSAASCVATVGAMRALFGEINKPTTC
                     KNAAEAERIIHKNSSGADCYVSTFGGLTYYHPTRAYTHMNPKIKFRFLVCTTGIRHDT
                     GKLVLRVKKFREKKLPIFLELAERARVICNDAKKAMNRGDQENLGKMMTENHELLMRL
                     DVSHPKLEEFIDICMENGALGGKLTGAGGGGSMIALIPNKKTDEIVSSIRKKIPHSVL
                     VELDYDGLQVNQTLTPAKKF"
     gene            2215..2994
                     /locus_tag="VNB68_04005"
     CDS             2215..2994
                     /locus_tag="VNB68_04005"
                     /EC_number="2.7.4.26"
                     /inference="COORDINATES: protein motif:HMM:NF040647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isopentenyl phosphate kinase"
                     /protein_id="HVD36545.1"
                     /translation="MDSNLALIKLGGSIVTHKEVPLSANEAAIAKILKALSSVKMPKI
                     LIHGGGSFGHYWSVKYDIHSKPDFYDPRGIATVHESMISLNEIIIKLMIKSNMNPYSI
                     PPSALTLNHKPILQKMHQLRNMANDQIIPVTFGDVVYAGHGKYSILSGDELMTLISSV
                     LRPKKIIFALNVDGIFTDLENRKLIRRYDNGNAVKFASVKADVTGGMRRKVREALKIA
                     SLGLDVWLVNGLKPKRLTGVIENVEVEGTVIKGKRGNTWNA"
     gene            2987..>3349
                     /locus_tag="VNB68_04010"
     CDS             2987..>3349
                     /locus_tag="VNB68_04010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36546.1"
                     /translation="MPDSSDSISHIDILQQRKKEGIRIPLNNDVQARESTNYLEYVKL
                     IHNALPELDYDGIDTSCTFLNHKLGAPIMIDSMTGGTPDATKINSRLGQLAEKYGLAM
                     GLGSQRAGLRSAALAETYS"
BASE COUNT         1088 a          635 c          724 g          902 t
ORIGIN      
        1 gcaatgagta ttctgggacg attcatgcca ggaacattta caaatccctc actccctgat
       61 tacatggaac cagaagttgt agttgttact gatcctcaag ccgatcaaca ggctgtcatt
      121 gaagcaacga gagcgggagt accagtcata gcaatatcta atagcgataa tgttacctca
      181 aaagtagatc tcgtaatacc tgcaaacaat agaggaagga aggcgcttgc aacagtctat
      241 tggttgcttg cgcgtgaggt tttaaagaaa cagggaaaaa ttaaatcaga tagtgggatg
      301 cccgtatcta tcgacgactt cgagacaaag ttggtcgaag aaattccttg aaggaatttg
      361 agagaaaacc agccgtatca ggcatattct accctagcaa gcaagaagag ctgctgagct
      421 cgataaaatc attatttcta gatcgaaaat tcggtccagg caatcttcct ccatcaagag
      481 acaaggggaa gatatttggg ttagtgtcgc ctcacgcggg ttacgtctat tcaggggccg
      541 ttgctgcgaa tggcttttac gaaatttcat cttcaagttt cgatactgta gtgataattg
      601 gtccgaatca ctatggaatc ggtagtgaca tagcgacact tgaaggagga acttggataa
      661 cccctattgg aaatatgaga atcaacgaac atttaacaca tgaaattgca gataattggg
      721 atgttgtcaa gttcgattcc ttagctcata gtagggatca ttgtatcgaa gttcaaattc
      781 cctttctcca atatattaat aaagagttga ccatagtgcc cataattctt gggaagcagg
      841 acaagagtac tgcaatggcg ttgggaaaat gtttggcgga aataatcaag aaaaagaatg
      901 tcatgctcat cgcttcatca gacttaaccc attatgaatc caaggacgag gcatacgaga
      961 aagacactcg attaatctct tctatattat caataaatat tccagagttt tattcagtgc
     1021 ttcataagtt tagagttacg gcctgtgggt atggtgcaat tggagcagtt atggcagcag
     1081 ccaaggagat gggtgcctct actggaaaat tattgagata tgctacgagt ggtgatgtaa
     1141 tcggtgatac tgcttcagtc gtcggatact catcaatcgc ttttgtatga acacacaatg
     1201 aatgagtatc acatggtcca agtccattca tcagctccag gcaaaataat ccttctagga
     1261 gaacattttg tagtctataa aaatccagca atcttggctg ccatcaatag aagaatagca
     1321 gtacatttga agcccaacgg gacccaattc acacgtgtta aagctgggcg aatggaactt
     1381 gttgtttcta cctcaaaacg tcaattatca aaaagaagga ccaattcgaa ctcctttctg
     1441 tatcccgtct taagttgtat tgccaatatc caatatcaaa tgaatgattt cagtggattg
     1501 gatgtaatca tcgaatcaca aatacctcat ggcgaaggac tgggttcttc tgctgcttca
     1561 tgtgttgcga ccgtaggtgc aatgcgcgcc ttgtttggag aaattaataa acctaccacc
     1621 tgtaagaatg ctgcagaagc cgagcgtatt attcacaaga attcttctgg cgctgattgt
     1681 tacgtaagta catttggagg tttaacatac tatcacccaa cccgtgctta cacccatatg
     1741 aatccaaaaa taaaatttcg tttccttgta tgtacaactg gaattagaca tgatacggga
     1801 aagcttgtct taagagtgaa aaagttcaga gaaaaaaagc tgccaatatt tttagaacta
     1861 gccgaaaggg ccagggtcat ttgcaacgat gcgaaaaaag ccatgaatag gggcgaccaa
     1921 gaaaatcttg gcaagatgat gactgaaaac catgaattgc ttatgagact tgatgtctca
     1981 catcctaaac tagaagaatt tatagacatc tgcatggaaa atggtgcatt gggtggcaag
     2041 cttaccggcg ctggtggagg gggcagcatg attgccctga taccaaataa aaaaactgac
     2101 gaaatagtat ctagtataag aaaaaaaata cctcactccg tccttgtaga attagattat
     2161 gatgggctgc aggtaaatca aaccttaact cccgctaaaa aattctgatt cactatggat
     2221 tcaaaccttg ctctgataaa gctgggaggc tctattgtta ctcataaaga ggttccatta
     2281 tcggcgaatg aggcagcaat tgccaagatt ctaaaagctc tttcctccgt gaaaatgccc
     2341 aagatcctaa ttcatggtgg aggatccttt ggacactatt ggtcagtcaa atacgatata
     2401 cattcgaaac ctgattttta cgatccccgc ggaattgcaa cggtacatga atccatgatt
     2461 tcccttaacg agatcataat taaattaatg ataaaatcga acatgaatcc ttattccatc
     2521 ccaccttcag cgctgacatt aaaccacaaa ccaattctac aaaaaatgca tcagctacga
     2581 aatatggcaa acgatcaaat aatacctgtt acttttggtg acgttgttta tgcggggcat
     2641 gggaaatatt cgatactttc aggggatgaa ttgatgactt taatttcctc cgttctcaga
     2701 cccaagaaaa taatttttgc actcaatgtt gatgggatat tcactgattt agagaatagg
     2761 aaacttataa ggcgatatga taatgggaat gcagtaaaat ttgcaagtgt gaaagcagat
     2821 gtcacagggg ggatgagaag aaaagttcgc gaagctttga aaatagcatc attaggtctg
     2881 gatgtctggc tagtaaatgg tctgaaaccc aaaagattaa ctggagttat agagaatgtg
     2941 gaggtagaag gtacagtaat aaagggaaag agaggcaata cctggaatgc ctgattcgtc
     3001 agactcaatt tcacacatcg atatccttca acaacgaaag aaagagggaa ttagaatccc
     3061 cttaaataat gatgttcagg caagagaatc tactaattat ttggaatatg ttaaattgat
     3121 ccacaatgca ctgcccgaat tagactatga tggaattgat acttcttgta cttttctaaa
     3181 ccacaaattg ggtgcaccaa ttatgattga ttccatgact gggggaaccc ccgatgcaac
     3241 caagattaat tctaggcttg gacagttagc ggaaaaatat ggcctcgcca tgggattagg
     3301 tagccaaaga gctggacttc gaagtgccgc gctagctgaa acttattct
//
LOCUS       DATLQL010000381         1520 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1337378, whole genome shotgun sequence.
ACCESSION   DATLQL010000381 DATLQL010000000
VERSION     DATLQL010000381.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1520)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1520)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1520
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1337378"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1273
                     /locus_tag="VNB68_04015"
     CDS             <1..1273
                     /locus_tag="VNB68_04015"
                     /inference="COORDINATES: protein motif:HMM:NF012861.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005247 - voltage-gated chloride channel
                     activity [Evidence IEA];
                     GO_process: GO:0006821 - chloride transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HVD36547.1"
                     /translation="LVASLTSYAISGIYLGWSPVLTIPQGMITKFTLESIAAYATLAT
                     IVGISSIFYTRIIGVTRVYFEKIRIPSFLKPVIGCAMVGIFAIGFPDILGTGYGLLQV
                     VIIGNYEFLPIWILIAIIFVKMFATSISVGSGGGISFFGPTLVIGGLIGAAVMSVFHL
                     FGVFTFVDIPSATLISMFAFFAAGTKSPFSSIVMGTEIVGGYFLLLPLTLSVLISYVI
                     SGKNTSIYKNNLAGFSIRKKNLNRQRSLYQFRVGDTMDPTFYDITKEAVINEAIRIMK
                     ETESTVMAVTNNEDKLEGIVHYRDLVETSEENKEIKTVEDVMIKDPPFLLPSDTLQKG
                     LETMVTSGLSELFVVSPSDNRLVIGLISLDDISRMCNERKPILLDIESIDQSDIQETN
                     NSFKKDSSVLERKISLTNKQIWSKLKDHWTI"
BASE COUNT          473 a          271 c          308 g          468 t
ORIGIN      
        1 actcgtagca tctctaacca gctacgccat ctctggcatc tatcttgggt ggtcgcctgt
       61 tctgacgatt cctcaaggaa tgatcactaa atttacttta gagtcaattg ctgcttacgc
      121 aaccttagct acaatagtag gaatatccag cattttttac acaagaatca ttggggttac
      181 tcgagtatac tttgaaaaaa tcagaatacc atcgttcctg aagccagtaa tagggtgtgc
      241 gatggtaggc atctttgcca taggcttccc tgacatattg ggaactggtt atggactgtt
      301 acaggtagtt attattggta attatgaatt tcttccgatt tggatactca ttgcaattat
      361 atttgtaaag atgtttgcaa cgtcgatctc cgtgggctcg ggtggtggca tcagtttttt
      421 tggccctaca ttggtaatag gaggtctaat aggagcagcg gtaatgtcag tattccatct
      481 gtttggagta ttcacatttg tagacatacc ctctgctact ttgataagta tgttcgcgtt
      541 ctttgctgcg gggacaaaga gtccattttc ttcaatcgta atgggaactg agatcgttgg
      601 aggatatttc ttattattgc ctttaacact ctcagtccta atttcttatg tcatatctgg
      661 taagaatacc tcgatctaca aaaataactt ggcgggcttt tcgatccgaa aaaaaaatct
      721 caacaggcaa agatccttgt atcaatttcg agtaggtgat acgatggatc ccacattcta
      781 cgatattact aaggaggcag ttattaacga ggccatccga attatgaaag aaactgaatc
      841 cacggttatg gcagttacca ataatgaaga caaattggag ggcatagtac attatagaga
      901 cctggtagaa acttctgaag aaaataaaga gataaaaact gtcgaggacg tcatgatcaa
      961 agatccacct tttttactcc cttcggacac acttcaaaaa ggattagaaa ccatggtaac
     1021 gtctggtctg tcagagttat tcgttgtttc cccatcagac aatagattgg ttatagggtt
     1081 gatatcttta gatgacattt ctaggatgtg taatgagaga aaaccaattc ttttggatat
     1141 cgaaagtatt gatcagtctg atattcaaga gacaaacaat agtttcaaaa aagactcgtc
     1201 tgtccttgaa cggaagatca gtcttacaaa taaacagatc tggtcaaagt taaaggacca
     1261 ttggacaatc tgagctttaa atatcaaata tatgaaaata tcgttcataa tcctgtgact
     1321 ataatggtga tggttataac gatgattgga agaagaaatc aagttcgaca acatagaggc
     1381 ataaaagata gacacggcct tccctgaatt gttaaaagtc ttataaatta tgaagtccac
     1441 gtagaactaa gatgatacaa aaaaatagac ttttcatagt cattctatta atatccgttc
     1501 tgtctgtcgg ttcgatgtct
//
LOCUS       DATLQL010000382         1090 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2051102, whole genome shotgun sequence.
ACCESSION   DATLQL010000382 DATLQL010000000
VERSION     DATLQL010000382.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1090)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1090)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1090
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2051102"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            106..537
                     /locus_tag="VNB68_04020"
     CDS             106..537
                     /locus_tag="VNB68_04020"
                     /inference="COORDINATES: protein motif:HMM:NF019013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ester cyclase"
                     /protein_id="HVD36548.1"
                     /translation="MSLVENKQFAWQFIEEVFNKGNLQAANGFVTPDLIYHARGEDVE
                     GLEKFKEWVSSDRDVFADIHYTLVDGIAEDGKVAIFWIVEATHNKEFRGIPATHKKFE
                     TVGVHAFHFKDGKIKEAWTIVDGLTPALELGVVKIVSNESK"
BASE COUNT          360 a          182 c          228 g          320 t
ORIGIN      
        1 aagaaaaatt aagtgtatat ttagcctaca acaactttcc ttaacaaatc tgcgagaact
       61 cgatagaaaa gagttaatta agagacccag attacatgat gtaacatgtc tcttgttgaa
      121 aacaaacaat ttgcctggca atttattgag gaagtgttta acaaagggaa tctacaagca
      181 gcgaatggat ttgtcactcc tgacttgatt taccatgccc gaggagaaga tgttgaggga
      241 ttggaaaaat ttaaggaatg ggtttcatca gatcgtgacg tatttgcaga tattcattat
      301 accttagtag atggaatagc ggaagatggt aaagtcgcta tcttttggat tgtggaagct
      361 acacataata aggaatttcg tggcattcct gctactcata agaaatttga aactgtgggg
      421 gtccatgcct tccatttcaa agatggcaag ataaaggaag catggactat agtcgatggg
      481 cttactccag cattggagct tggtgtcgtc aaaatagtat ctaatgagag caaataacaa
      541 aataatggta gtaatcgact cgaagagaac aatataattt gtccatgtat agctctctat
      601 acccgcttta taatgtaaac acatttttca agattaatac aaagcccttt ttctatgcat
      661 taccttgatt aatggtaggt acaaagaagc ctatattagt ttccatatat ttcaataatc
      721 gtgtaatatt catgtgagtc gaacaactcg aacgcaatct ttgcactcac ttatcaagtt
      781 gaaactttaa ggtacttatt cacgcatacc ttggttttta tttttcatta cttggtatag
      841 agggaagaga tgtgtatttg tctatctatt atactcttgt aacaaacaaa ttcttgatct
      901 ctataacttt aatagggtct tgaggtaaaa cacatttcat gggattatta ggtgcaatgg
      961 tggtaggagg tgcggtagga agacgtagcg gtagaagaca gatggaaagt atgcaagcat
     1021 ctcaagcgca gcagcaagcg acgcaacagg ctcaagctca agcagctcaa gctcaagctc
     1081 aggcagcaca
//
LOCUS       DATLQL010000383         1066 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_94341, whole genome shotgun sequence.
ACCESSION   DATLQL010000383 DATLQL010000000
VERSION     DATLQL010000383.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1066)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1066)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1066
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94341"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(31..342)
                     /locus_tag="VNB68_04025"
     CDS             complement(31..342)
                     /locus_tag="VNB68_04025"
                     /inference="COORDINATES: protein motif:HMM:NF019013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0030638 - polyketide metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ester cyclase"
                     /protein_id="HVD36549.1"
                     /translation="MRAKYGFPRTNKKVIHQVFESYNQQNLEKAEKLYSPKHIFHFPG
                     APPMDWNSHKQFIVGLSKAFPDLHFKVEDILTEGDKVAYRLTVSGTNKGEFQGIPPTD
                     R"
     gene            506..>1066
                     /locus_tag="VNB68_04030"
     CDS             506..>1066
                     /locus_tag="VNB68_04030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36550.1"
                     /translation="MPARIPRPIYRKMKHDVFKLQDHSLCIAVGNTRAGVSTIILSRR
                     LRLCKTGQYCIAKKGPVVVVITLLMIIITTPTILQPALTTASNLSANTTNTDDAGYNS
                     FTLIPSNQSTTSISSSVEKTNVTLRGLFNVQVDPGRWNQLLQPALDELNRRHPDMNIE
                     LEYTEFFYPGTRNQIVDRLSKGETVDI"
BASE COUNT          341 a          211 c          206 g          308 t
ORIGIN      
        1 gtttgaaatg cccgtggatg tgaaagagac ttatctgtca gtcggcggta tgccttgaaa
       61 ctctcctttg tttgtaccac taacagttag acgatatgcc actttatcac cttctgtaag
      121 aatgtcttca actttaaaat gaaggtctgg aaatgcctta gaaagtccaa cgatgaattg
      181 tttatgtgaa ttccaatcca ttggtggtgc tccgggaaag tgaaagatgt gtttaggtga
      241 ataaagcttt tcagcttttt ccaaattttg ctgattgtaa gattcaaaga cctggtgaat
      301 tacttttttg tttgttctgg ggaagccata tttagctcgc aaatagctac tgctgtctta
      361 agtaccgtat gcatgtttgt tatagaactt ttctgtaact tccagagggt tccagcagaa
      421 aaacgttcag aaatgagact cagtcaacta gatcagaaaa actcaatatc agttacaatg
      481 cgttagcgag cataaaaaaa agacgatgcc ggctcgaata cccagaccca tatacaggaa
      541 aatgaaacat gatgttttta aactacagga tcattcctta tgcatcgctg tagggaacac
      601 tagagcagga gttagcacaa taatattgag tagaagattg cgattatgca agactgggca
      661 atattgtatt gccaagaagg gtccggttgt tgttgtcatt actctcctga tgatcatcat
      721 aacaactccc acaattttac aacctgcact aactaccgcc tccaatttat cagctaacac
      781 aacgaatact gatgatgctg gatacaactc cttcacactt attccgtcaa accagtcaac
      841 aacaagtata tcatcgtcag ttgaaaaaac taacgttacc ctaagaggac tctttaatgt
      901 acaagtcgat ccaggaagat ggaatcaact actccagcct gctcttgatg aactcaatag
      961 acgccaccca gatatgaaca tagagttaga gtacactgag ttcttttatc ctggaacaag
     1021 aaatcaaatt gtagatagat tatctaaagg cgaaactgtt gacatt
//
LOCUS       DATLQL010000384         1360 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1517717, whole genome shotgun sequence.
ACCESSION   DATLQL010000384 DATLQL010000000
VERSION     DATLQL010000384.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1360)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1360)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1360
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1517717"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            210..1253
                     /locus_tag="VNB68_04035"
     CDS             210..1253
                     /locus_tag="VNB68_04035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36551.1"
                     /translation="MTILSISMSVALINTPISVIYSGSVYGQGGDNWYVGKGAKPNMY
                     VTYKIQSHDTNQGQPFTMTIYFKEFNDTGHYWVAPVYVNDQGKIINGTFHLSDLDLTA
                     LGTSQIPPALSPYRSAYTSSLEWLSAFVPKPGQSLSSPNWGKIASIGGSPIGPGGQEK
                     ITVPAGTFDTKVISWHKGVDNKIWLNKDMPYPIKAQTFADTTTTNPPLQYAFELQATG
                     QGQPPVPKSVLEIPKPPLKLQTARGTYYITLLWTPDPIKVGNETDFGILFVDNSQNIV
                     PRVSYSFNMTDVNGTVIKDVHNQQALDGTGTQKVKFEKPGPIVVTVRVEDVQGENMGA
                     FVESADFNLYVSN"
BASE COUNT          452 a          251 c          281 g          376 t
ORIGIN      
        1 cgaataaaag cggtttacaa tattttatag gatgtaaatc gatctggatg tttgaggtca
       61 tattcttgat ctaaaataaa tcattcacta gagattcatt ttgctataca cataatggct
      121 ctcgtataca aaacatttat gaatttggaa tataatacat cttgtaaatg aataaaggtg
      181 aaagtaacag caaaaagaag gtttttgcat tgacaatcct aagtatatca atgtcagttg
      241 ctttgataaa tactcccatc agtgtcattt actctggtag tgtatatggg caggggggtg
      301 acaactggta cgttggaaaa ggggcgaagc caaacatgta cgtgacttac aagatccaaa
      361 gtcatgatac aaatcaaggt cagcctttca ccatgacaat atactttaag gaatttaatg
      421 atacaggaca ttattgggta gctcctgttt atgttaatga ccagggaaag ataataaacg
      481 gaacttttca tttgagtgat ctagatttaa cagcgttagg cacttctcag ataccacctg
      541 ccctgtcacc gtatagaagc gcttatacta gctcattaga atggctttct gcttttgttc
      601 caaaacctgg tcagtcgttg agttcgccaa attggggtaa aatagcctca ataggaggtt
      661 ctcccatagg tcctggtgga caagaaaaaa ttacagtgcc tgctggaact ttcgacacta
      721 aagtaatttc atggcataag ggagtcgata acaagatttg gttaaacaaa gatatgccat
      781 atccaattaa ggcacagacc tttgctgata caacaacaac aaatcctcca cttcagtatg
      841 ctttcgaact ccaagcgacg ggtcaaggtc aacctcctgt tccgaagagt gtactagaaa
      901 tcccaaaacc accattaaaa ctacagacag cacgtggaac gtattacata accttgctct
      961 ggacaccaga cccgataaaa gtaggaaatg aaactgactt tggtatcctg tttgtggata
     1021 actctcaaaa tattgtaccc agagttagct acagctttaa tatgactgac gtgaacggta
     1081 cggtaattaa ggatgttcat aaccaacaag cactagatgg aacaggaact caaaaagtga
     1141 aatttgaaaa gcctggaccc atagttgtta cagtacgcgt agaggatgta cagggagaga
     1201 atatgggagc gtttgtagaa agcgcggatt tcaatctcta tgtaagtaac tagaaaatta
     1261 gtctcaggaa aatagatttc agggatgcaa tcagtacggc accttaccta cctgtgcttc
     1321 tagggatata gcaactgata ttcatgttga gagtttgctc
//
LOCUS       DATLQL010000385         1558 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_452664, whole genome shotgun sequence.
ACCESSION   DATLQL010000385 DATLQL010000000
VERSION     DATLQL010000385.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1558)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1558)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1558
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_452664"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..611)
                     /locus_tag="VNB68_04040"
     CDS             complement(<1..611)
                     /locus_tag="VNB68_04040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36552.1"
                     /translation="MPELWLNYGSADVVLDVKVENLNTLDNAKFKKLEEEIIDQQIAS
                     IPLENTKILALGKSKSIARIISLLLSHAKKKGINNLLPESLPKDHSSLSKNMEGNSLS
                     ISKQTAEYILERGNDSKTLFVSCTRVNPMFGFGGVPTIILREFLRDKMTEAYCSRLTN
                     LPSPGTRPASLDIAIDVCKNMNAKCIQVISTRDGIDSLFFGSVS"
     gene            complement(696..1259)
                     /locus_tag="VNB68_04045"
     CDS             complement(696..1259)
                     /locus_tag="VNB68_04045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TATA-box-binding protein"
                     /protein_id="HVD36553.1"
                     /translation="MPQTKPIVSIENVVASATVNQTVNLNLITQIFPDVEYHPDQFPG
                     LVFRLKSPKTATLIFSSGKMVCTGAKSEEQAIKAVKNVVQKLKKGGIPIENEPQIEIQ
                     NIVASASLGGKIHLELAARVLPRSMYEPEQFPGLIHRMLDPKTVILLFASGKLVCTGA
                     KKESEVYRAVHNLHTLLEEKNLMIYEG"
     gene            complement(1369..>1558)
                     /locus_tag="VNB68_04050"
     CDS             complement(1369..>1558)
                     /locus_tag="VNB68_04050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004045 - aminoacyl-tRNA hydrolase
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="peptidyl-tRNA hydrolase"
                     /protein_id="HVD36554.1"
                     /translation="LKVNSLQELAEIKNIAENIMLPVVTVQDMGLTQIQPGTTTCIGI
                     GPAPSKIIDRVTNNLKLL"
BASE COUNT          421 a          299 c          307 g          531 t
ORIGIN      
        1 gatactgagc caaaaaataa actatctatt ccatccctgg tagagatcac ttgaatacac
       61 ttcgcattca tattcttgca aacatctatt gcaatatcta gagatgcggg cctagttcct
      121 ggagagggca aatttgtgag ccttgaacaa tatgcctcgg tcatcttgtc cctcaagaat
      181 tcacgcagta tgatagtggg aacacctcca aatccaaaca tgggatttac cctagtacat
      241 gatacaaata gtgttttcga atcatttccc ctctctagta tatattcggc agtctgtttg
      301 cttatagaca aactattccc ttccatattt ttcgatagtg atgaatggtc ctttgggaga
      361 gattctggta acaaattgtt gatccccttt tttttagcgt gacttaataa taaagagatt
      421 attcttgcaa tagatttgga ctttcctaat gccagaattt tcgtattttc tagtggaatt
      481 gaagcaattt gttgatcaat aatttcttct tcgagttttt tgaatttggc gttgtcgaga
      541 gtgttcagat tttctacctt tacgtctaac actacatctg ctgatccata attaagccat
      601 agttctggca tgctttgaat tagaagaata gtaataacat tattatcatt aaccgattct
      661 attattttgc ctcaatgata ctgttagatg gaatatcatc cttcgtagat cattagattt
      721 ttttcttcga gtagcgtatg taagttgtga acggccctat agacctcgct ttctttcttt
      781 gcgccagtac aaactagttt accgcttgcg aataataaga tcacagtttt cggatcgagc
      841 atacggtgta tcaggccagg aaactgttct ggttcgtaca tactgcgcgg gagaactctt
      901 gctgccagct cgagatgaat tttaccccct agactagcag aagcaacaat attctgaatt
      961 tcaatctggg gttcattttc aattggaatc cctccctttt ttagcttctg aactacattt
     1021 tttacagctt ttatcgcctg ttcttcagat ttagccccag tacagaccat tttaccagaa
     1081 ctgaatatca atgttgccgt tttaggtgat tttagtcgga aaactaaacc cggaaattgg
     1141 tctggatgat attctacatc aggaaaaatt tgagtgatta agttaagatt aactgtttga
     1201 ttaacagttg cggatgcaac gacgttctct atactgacaa tgggtttagt ctggggcata
     1261 ctaggttgcc tttataaagg gcagtatata tacctgtttg gtagatcggc acccgagaca
     1321 gggcttattt gtgagtgggc acataaaaat attatgtcgt aagaattctc aaaggagttt
     1381 caagttgttg gtcactctgt caatgatttt ggaaggtgcg ggacctattc cgatacaagt
     1441 agtagttcct ggttggatct gagttaagcc catgtcttgt accgtaacta ccggaagcat
     1501 tatgttctca gcaatattct tgatttcagc gagttcctgc aggctgttca cttttagg
//
LOCUS       DATLQL010000386         1559 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1692690, whole genome shotgun sequence.
ACCESSION   DATLQL010000386 DATLQL010000000
VERSION     DATLQL010000386.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1559)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1559)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1559
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1692690"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..193
                     /locus_tag="VNB68_04055"
     CDS             <1..193
                     /locus_tag="VNB68_04055"
                     /inference="COORDINATES: protein motif:HMM:NF019013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0030638 - polyketide metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ester cyclase"
                     /protein_id="HVD36555.1"
                     /translation="EDAFGEQDKLAMRWNLKGTFAKELHGSQPSHEKFETQGVEIFHF
                     QDGKIKEAWTIFGSMDSLK"
     gene            297..>1559
                     /locus_tag="VNB68_04060"
     CDS             297..>1559
                     /locus_tag="VNB68_04060"
                     /inference="COORDINATES: protein motif:HMM:NF013862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HVD36556.1"
                     /translation="MLTSTIDFQRALIFQGGGSLGAYEAGAYKAFYELASERDKIIGR
                     KDKPLFDIVAGTSIGAMNASVLVSYVKEKKTWAGSAERLIEFWEHLTTESVVDKMPGF
                     TQWWDYWHYLNNVVATSESARRYYNTKQFILKGVPNVFKPSQTLTDKTFLDPSNVWYL
                     YSNGPLKQSLEKFAKFPIATSYEKKEPRLLLVAVDVQEGSTVVFDSYEKPDGSHKTEY
                     GRYGMEYAQNGNEGFEHVIRYNNGIEVEFVLASGSVPVNYDYTKLMVEDYSNKHKIKS
                     ENGDEKKSRRKSLNKKERYFWDGGIIANTPLREAIMEHRKYWHYVRKSEVPLLRAFII
                     NVHPIKQEYLPANYDGVVDRKNDLTYHDRTLFDERMAIMVTDYVNIIKKLIKLADDNK
                     IRKELVDNILQQQALTRNFMTGKHFTYAD"
BASE COUNT          544 a          246 c          341 g          428 t
ORIGIN      
        1 agaagatgca tttggggaac aagataaact tgccatgaga tggaacttga aaggcacatt
       61 tgcaaaggaa cttcatggta gtcaacctag tcatgagaag tttgagactc aaggcgtcga
      121 gatttttcat tttcaagatg gcaaaatcaa ggaagcatgg acaatatttg gaagcatgga
      181 cagtttaaaa taacctcaaa cgggcttgca gcttaatctt gtagtcctat tacagccaga
      241 gcctgcaaaa caataaaaag atacttttaa tttccctttt tttatcacat tactgaatgt
      301 tgacatctac aattgatttt caaagagcct taatcttcca aggagggggc tcacttggag
      361 cgtatgaagc tggcgcttac aaggcatttt atgaattggc ttcagaaaga gacaaaatta
      421 taggaaggaa agataaaccg ttatttgata ttgttgctgg cacttccata ggtgctatga
      481 atgcatctgt tctggtaagt tatgtgaaag aaaaaaagac ttgggcagga tctgcggaaa
      541 ggttaattga attttgggaa catcttacta ccgaatcagt tgttgataaa atgccaggtt
      601 ttactcaatg gtgggattat tggcattatc ttaacaatgt tgtagctacg agtgaatcag
      661 ctagaaggta ttacaataca aagcagttca tacttaaagg ggtacctaat gtgttcaaac
      721 cttctcagac tttgacagat aagacgtttt tagatccttc taatgtgtgg tatctttata
      781 gtaacggacc attaaagcaa agtctagaga aatttgcaaa atttccgata gcgaccagtt
      841 atgagaaaaa agaacccaga ctactcttgg tagctgtaga tgtacaggaa ggaagcacag
      901 tagtgtttga tagttatgag aaacccgacg gtagccacaa aactgaatat ggacgttacg
      961 gtatggaata tgcacagaat ggtaacgaag gattcgaaca cgtaatcagg tataataatg
     1021 gaatagaagt tgaatttgtt cttgcaagtg gttctgtacc cgttaactac gactacacca
     1081 agttaatggt cgaagattac agtaacaaac acaaaatcaa aagtgaaaat ggagatgaga
     1141 aaaaatcccg tagaaaaagc cttaataaga aagaacgcta cttttgggat ggtgggatta
     1201 ttgccaacac tccgctaagg gaggccataa tggaacaccg gaagtattgg cactatgtta
     1261 gaaaatctga ggttccactt ctacgtgctt tcataattaa cgtacatccg attaaacaag
     1321 aatatttacc tgctaattat gatggagtag tagatagaaa aaacgatttg acgtaccatg
     1381 ataggacttt gtttgatgaa aggatggcaa taatggtaac ggattatgtt aacattatca
     1441 agaaactaat taagctggcc gacgataata agattagaaa ggagttagta gacaacattt
     1501 tacaacagca ggccctaacg agaaatttta tgactggcaa gcattttaca tacgcggat
//
LOCUS       DATLQL010000387         1233 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_982208, whole genome shotgun sequence.
ACCESSION   DATLQL010000387 DATLQL010000000
VERSION     DATLQL010000387.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1233)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1233)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1233
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_982208"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(194..1042)
                     /locus_tag="VNB68_04065"
     CDS             complement(194..1042)
                     /locus_tag="VNB68_04065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HVD36557.1"
                     /translation="MKKREVDLEPQYSIEEDRKGKGKRTVDLNDVANIVLFLAAFVGI
                     WQLVFTLGIWPKVSMPSPAMVAESFVQLIQNITLITSIGMTMWRLAIGFAISITIGVG
                     IGLAMVKFTGFGKTMSSFAVGLQSFPSVAWVPFAILLIGLNDFGILFVVVMSSVFSVM
                     ISTYSGINNIPPIYIRAARNMGARGLSLFRYVMIPAATPSLIVGIKQAWSFAWHALIG
                     AEILIAASVGLGHILLVGREFQLMDQIIASMITIFAIGLLFDRLVFSKLEDKVRDRWG
                     LKQGSE"
BASE COUNT          398 a          289 c          190 g          356 t
ORIGIN      
        1 gtagaacccc ttaatctcaa gggatataat cctgcctaat ccactgagaa ccaagtgttg
       61 gaagaattta gaagttaaaa agagagcagt agttgactgg ccttaacata gatcatagaa
      121 ccaagaatcg gaaacttatc aaactaaaca agtattctca atgaatttat aatatagcaa
      181 atcgaaatac ttactactcg ctaccctgct ttaaccccca tctgtctctt actttatctt
      241 ctagcttaga aaaaacaagt ctgtcaaata aaagaccaat cgcaaaaata gttatcattg
      301 atgcaattat ctgatccata agctggaatt ctctaccaac aagtaagata tgaccaagcc
      361 ccacagatgc agctattaat atctcagctc ctattaacgc gtgccatgca aaagaccatg
      421 cctgttttat tcctacaatc aaagagggag ttgcagcagg tatcatcaca tacctaaaaa
      481 gtgacaatcc tcttgcaccc atgttcctag cggcacgaat gtaaatcggc ggtatgttgt
      541 taatcccgct gtaggtagat atcatgactg agaagactga actcataact accacgaata
      601 gaatgccaaa atcgttaaga ccaattaaca agattgcaaa cggcacccat gccacacttg
      661 gaaaagattg caaacctacc gcaaatgagc tcatcgtttt tccaaagcct gtaaacttta
      721 ccattgctag gccaattcct accccaatgg taattgaaat tgcaaatcct attgcaagac
      781 gccacattgt cattccaata cttgtaatta atgtaatatt ctgaatcagt tgcacaaaag
      841 attcagcaac catagctggc gacggcatag ataccttggg ccatatacca agtgtaaata
      901 ccaactgcca tatccctaca aacgctgcta gaaatagtac tatgttggct acatcattaa
      961 ggtcaactgt ccttttccct tttccctttc tgtcctcttc aatggaatac tgtggctcca
     1021 agtctacctc cctctttttc atcaaataat atatcctcgg actcttctct aatctccatt
     1081 ccgacagtgt tccatgttta caaattcgcc gtctttaaca tcgatattta agtcgtccaa
     1141 aacgacatag ctttcacttc cacagtaacc ttttgaaaca ttaagttgta ctttttttaa
     1201 ctttgttttt tgtgatagcg tgaacattcg tga
//
LOCUS       DATLQL010000388         1109 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1693317, whole genome shotgun sequence.
ACCESSION   DATLQL010000388 DATLQL010000000
VERSION     DATLQL010000388.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1109)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1109)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1109
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1693317"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            721..>1109
                     /locus_tag="VNB68_04070"
     CDS             721..>1109
                     /locus_tag="VNB68_04070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36558.1"
                     /translation="MSKEPNLATLPILFGIILTIIAPSVGVWTVNFAYGKVSNNVKNV
                     NFEIFECTVQGNSTHEISGPCPEVGGESPAVNVDKSPETKSPETKSPETKSPETKSPE
                     TKSPETKSPETKSPETKVDTSPNNDLT"
BASE COUNT          339 a          203 c          239 g          328 t
ORIGIN      
        1 aggaggagat ttccctgtgg acccaagtct ctcgcgaatt ctctgactgc aacacttgat
       61 acaatacttg caatggctcc cccaatcaat attattgcag cagccgttat aattggcatg
      121 aggtatacat ttaatcttgc ataaacctta gcgggccgtg ttttcgccaa actgtcaaag
      181 aatttcaaac caaacggcgt gtgtattagg attaagggaa agggcttaaa tacatcgaca
      241 cgaatgcctg tagactttaa caaaagtaat tcactactaa ttttgtgtca atatatattt
      301 aaaccaatcc cgagaaattc gggcgtttct ctatatttgc gggttagact ttctaacctc
      361 tgcaaattag ctcccggtaa gtgataattt catttggaga taatttcagt ctcaagtatt
      421 tttcttgttc ttggcgtgtc atgaccttct tttcctacat gtctgtctct agcggtagtt
      481 tctaattctg tctaggcttt tctatttttt ctacaagttg atcagttaat gtatcgttct
      541 ttactaggag agctcaataa caatgggctg ttctaatgat aaaataaatt tgtctacaag
      601 tcgagaataa gcagataagg gatattcagt tagtatttta cggtagaaat aaagtatgtt
      661 tcttattcaa agattcttca caccttgtaa atagtgaatt ccgatgtgta ggttgacttc
      721 atgagcaagg aaccgaatct agcaacgctg ccaattttat ttggaattat cttaacgatt
      781 atagctccct cagtaggtgt ttggaccgtt aattttgctt atggcaaagt atcaaacaat
      841 gttaaaaatg taaattttga aatttttgag tgtaccgtac aagggaacag tacccatgag
      901 ataagcggtc cttgtcccga agtaggcggg gaaagtccag cggtcaacgt ggataagagt
      961 ccagagacga agagtccaga gacgaagagt ccagagacga agagtccaga gacgaagagt
     1021 ccagagacga agagtccaga gacgaagagt ccagagacga agagtccaga gacgaaggtg
     1081 gatacgagtc cgaataatga cttgacaga
//
LOCUS       DATLQL010000389         1663 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1870864, whole genome shotgun sequence.
ACCESSION   DATLQL010000389 DATLQL010000000
VERSION     DATLQL010000389.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1663)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1663)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1663
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1870864"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..707
                     /locus_tag="VNB68_04075"
     CDS             <1..707
                     /locus_tag="VNB68_04075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HVD36559.1"
                     /translation="MHGPSGTGKTLLAKAVATESEANFISVRGPELLSKWVGESERGI
                     REIFRRARQAAPCVVFFDEIDSIAPTRGMGGDSMVTERVVSQLLTELDGIQALSGVVV
                     LAATNRADIIDPALLRPGRFDKIVFVPMPDKLARQKILEIHSKDKPLGPDVNLVRVAE
                     LTEGFSGADASSVANTAVSLVLHEYLAKYPTPEEAAKHVSEAHVMMRHFEESVKKIKT
                     QREGKPGEKVAVPYYR"
     gene            complement(784..1455)
                     /locus_tag="VNB68_04080"
     CDS             complement(784..1455)
                     /locus_tag="VNB68_04080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36560.1"
                     /translation="MYIDTISVPHAVKQVIGSNGLFFQALRTGIVNYTALAQKIKPDV
                     EKLTKNNVNLNTLVVAIKRFADTLEDNGRNLSVPTIDGIRMSLTGSILDLDFRTVSHA
                     VIEALDELIESDKGYSMFRTNKQIRVFIEDLDEVRTIFAPTKSFEGTIKEGLSKITIN
                     IPTDMQNTYSILSTVSYIISSSQIPLYNAFFSHDEITLILNVSDAAKAYEIIREELAG
                     MRERE"
BASE COUNT          520 a          303 c          357 g          483 t
ORIGIN      
        1 taatgcacgg accatctggt acaggtaaaa cacttcttgc aaaggccgtt gccacagaat
       61 cggaggcaaa tttcataagt gtaagaggtc ctgaactttt aagcaagtgg gtcggagaat
      121 ccgaacgagg cataagggaa atattcagga gggcaaggca ggctgctcct tgtgtggtat
      181 tttttgatga aattgattcg atagctccta cgagaggaat gggtggagat agtatggtta
      241 ctgaaagggt agtatcccaa ttactaactg aacttgacgg aatccaggca ctttctggtg
      301 tagtcgtttt agcggcaaca aatagggcag atataataga tcccgctctt ttgaggcctg
      361 gtagatttga taaaatagta tttgttccta tgccagacaa gcttgcacga caaaagattt
      421 tggaaataca ctcaaaagat aagccattag gtccagatgt aaatttggta cgggttgcag
      481 aacttaccga aggattcagt ggagccgatg caagttccgt agcgaacacc gctgtttctc
      541 tcgttttgca tgaatacttg gcaaaatacc ctacaccaga agaagcagca aagcacgtct
      601 cggaggcaca tgtaatgatg cgtcattttg aagagagtgt aaagaaaata aagactcaaa
      661 gagaggggaa accgggagag aaggtggcag ttccgtatta caggtgaatc gagaatcaaa
      721 ttaccactta gtagctaatg aaaaaaaatc agtagtgtcc caactgtgta tatggtacta
      781 gtcctactct cgctcccgca tgcctgctaa ctcttctctg attatctcgt aggctttagc
      841 ggcgtcactg acattcaata tcagcgtaat ttcatcatga gaaaagaaag cattgtacaa
      901 tgggatttgg ctgctagaaa tgatatagga tactgtcgag aggatgctat atgtattctg
      961 catgtctgtg gggatattaa tagtgatttt cgataagcct tctttgattg tgccttcaaa
     1021 acttttagtg ggagcaaaaa tcgtacgaac ttcatcgagg tcctctatga aaactcgaat
     1081 ttgtttattt gttctaaaca tgctgtatcc cttgtcagat tcgataagct cgtcaagggc
     1141 ctcaattacc gcatgagaaa cagttctgaa atccaaatcc aaaatactac cagtcaaaga
     1201 cattctaatt ccgtcaatgg taggtactga caggtttctc ccattgtctt ccaacgtgtc
     1261 tgcaaatctc ttaatggcaa ccaccagagt attcaaatta acattgtttt tagtcaattt
     1321 ttcgacgtca ggttttattt tttgagctaa tgccgtgtaa ttgactatgc ctgttcttag
     1381 tgcttgaaaa aacaaaccat tagatcctat tacttgcttt acggcatggg ggactgagat
     1441 tgtgtctatg tacacaaaat tttggtgaac ccaaatcgta ataaattttt cgaattctta
     1501 taaaaaatta tcgaatgtat caaaaattac aaaatgttat agcccagact attccttgca
     1561 attacaaatt aattaataga aattactcca aggaagtagt acatgaagag tattgatgta
     1621 gatgatatta cctacaagcg attatcgtcc gtaagaattg aat
//
LOCUS       DATLQL010000390         1427 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_274480, whole genome shotgun sequence.
ACCESSION   DATLQL010000390 DATLQL010000000
VERSION     DATLQL010000390.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1427)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1427)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1427
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_274480"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..908
                     /locus_tag="VNB68_04085"
     CDS             <1..908
                     /locus_tag="VNB68_04085"
                     /inference="COORDINATES: protein motif:HMM:NF014686.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HVD36561.1"
                     /translation="GKIIGSDSDSPAPGAFMVDIFSVMPKAEEEQSLFIDKLFELVKI
                     HRITVLMPSSGFDIYSYSKYRKELQELGAYAVVSDRDVLEICRDKIRTYQELLPRFKV
                     PFTTTEPDKIPSFPVIAKPRHGKGSRDVIMVEDESDLRYVTSKYHDMLFQQYLPGIEY
                     TIDVLSDLNKEPLFAVPRIRLQTKAGISTKGKIVRNQKMEEDCMNIAKSIGIRGPCCI
                     QMKETEDSEPQLVEVNARLGGGTIFTTLAGANIPALILDLVEGKEISVPKISEVTVIR
                     YFEEIVVHDSLDRPRTPTPITHTGQ"
     gene            complement(1191..>1427)
                     /locus_tag="VNB68_04090"
     CDS             complement(1191..>1427)
                     /locus_tag="VNB68_04090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36562.1"
                     /translation="VVFQSLILLPLLSNDYYSGIFYVVSVIFTGMIYGIDFRLRNPGS
                     PLWLYRPLITILSTLVFTWLLVYAAITIKKTAWR"
BASE COUNT          474 a          268 c          283 g          402 t
ORIGIN      
        1 agggaaaaat tatcggaagt gactcggact caccagctcc aggagcattc atggtagata
       61 tattctcagt tatgccaaaa gctgaagaag aacaatcatt gttcattgac aaactgttcg
      121 aattagtcaa gattcaccga attactgtcc taatgccttc ttctggattt gatatttact
      181 catatagcaa atatcgaaaa gagcttcaag aacttggagc gtatgccgtt gtaagcgaca
      241 gagatgtact agagatttgt cgcgacaaaa tacgtaccta tcaggaattg ttacctaggt
      301 tcaaagttcc atttacaaca actgaaccgg acaagatccc aagctttcca gtaatagcaa
      361 agccccgaca tggcaaaggt agcagagatg tgatcatggt tgaagatgag tctgatttaa
      421 gatatgttac cagtaaatat catgatatgc tattccaaca atatttgccc ggaattgaat
      481 atactataga tgtcctttct gatttaaata aagaacccct ttttgcagtt ccccgcatta
      541 gactacagac aaaggccggg atatcaacca aaggaaaaat agtgcggaat caaaaaatgg
      601 aagaggattg catgaatatc gcaaaatcca ttggaataag aggaccctgt tgtatacaga
      661 tgaaagagac ggaagacagt gaaccccaat tggtagaagt taacgcaaga cttgggggtg
      721 gcacaatatt cacaacattg gctggagcga atatacctgc actcatacta gatttagttg
      781 agggaaagga aatctctgtc cctaagattt ctgaggttac tgtaatccgc tattttgaag
      841 aaattgttgt acatgactca ttagatcgcc caagaactcc cacgccaata acgcatactg
      901 gacaataata gcaaagccaa ggccatgctg gtttgctagt tgcccttcga cagtgttgct
      961 gctggtagca aggatgcatg cctttgcatc aatactaaag taatttacaa cctcgcatgg
     1021 agttaggtgt gcaacctttg tgactaacaa aacaaatgca agagagaatc caacaccgac
     1081 aaggatggca tcccatcttc ttttttttgt tctaaggttt gtttcttctg gttgattctg
     1141 attgtgatta ttgtatgtac tatttttatt attattcaaa ttttatcatt ttatctccat
     1201 gctgttttct tgatagttat tgcagcatag accaatagcc atgtaaaaac aagtgtcgaa
     1261 agtattgtta tcaatggcct atataaccat agaggacttc caggatttcg caacctaaaa
     1321 tcaatgccat atatcatgcc ggtgaatatt acagatacta cgtaaaagat accactatag
     1381 taatcattgg aaagtagagg taaaagaatc aatgactgaa atacaac
//
LOCUS       DATLQL010000391         1101 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1145112, whole genome shotgun sequence.
ACCESSION   DATLQL010000391 DATLQL010000000
VERSION     DATLQL010000391.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1101)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1101)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1101
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1145112"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1101
                     /locus_tag="VNB68_04095"
     CDS             <1..>1101
                     /locus_tag="VNB68_04095"
                     /inference="COORDINATES: protein motif:HMM:NF013647.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0033179 - proton-transporting V-type
                     ATPase, V0 domain [Evidence IEA];
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_function: GO:0046961 - proton-transporting ATPase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="V-type ATPase 116kDa subunit family protein"
                     /protein_id="HVD36563.1"
                     /translation="MFKGAPKGTTDYVIEDIRHFIEDLENKNKEILNEPKNVLIERNR
                     ITKELEEYNNIVVALKMAASLNLDLAAFRKLKRFYAEIFVIDSRDIEEVTKSLNELLV
                     YSNKLNDEKSVVIVFGSNEDSERVTKVLRGFGYHPLQIPAHMPQNPSIAYAQSEVKVK
                     DLEANLSKVSKAIEKIRASLLSKILSLHEAAKVAKDILEITRKPAGTKNFAMIQGYIP
                     TPMKKTFNNLTKGYISVIEEAHFERAGEHAEILPSLLTNKSYIRTFEVITETQGVPNY
                     DETDPTPIIAFVWPLFYGLMFADLGHGLLLFGLGMLLRQRGNGSIRTWGTLLAASGAA
                     ASLGGLLTGELFGFHLFGFDILAPFLKYLPFVG"
BASE COUNT          351 a          191 c          241 g          318 t
ORIGIN      
        1 aatgtttaaa ggcgccccca aggggacaac agattacgtt atagaagata ttcgtcattt
       61 cattgaagac ctcgagaaca aaaataaaga aatactaaat gagccaaaaa atgtattgat
      121 tgaacgaaac aggattacaa aagaactcga agaatataac aatattgtag tggcacttaa
      181 gatggcggct agcttgaatc tggacttggc tgcatttaga aagttgaaga gattttatgc
      241 tgaaattttt gttattgatt caagagatat agaggaggtc acgaaaagcc ttaatgagct
      301 tttagtttac tctaataagc tcaatgatga gaagtccgtc gttattgtat ttggctcaaa
      361 tgaggattca gaacgggtta cgaaggtact tcgaggtttt ggttatcacc cacttcaaat
      421 tccagctcat atgcctcaaa atccatcaat tgcttacgct cagtctgaag tgaaggtaaa
      481 agatcttgaa gcaaatttgt ccaaggtgtc taaggcaatt gaaaagataa gagcgtcatt
      541 attaagtaag atcctttcgc ttcacgaagc cgcaaaagtt gcgaaagata ttttggaaat
      601 aacaagaaaa cctgctggta caaagaactt tgctatgatt caaggctata tacctacacc
      661 aatgaagaaa acattcaata atctaacaaa aggatatatt tcggtcatag aagaggcgca
      721 ttttgaaaga gcgggcgaac atgctgagat attgcctagc cttttaacga acaaatccta
      781 tattcggact tttgaagtta taactgagac tcaaggcgta ccaaactatg acgaaacaga
      841 tccaactccg attatagctt ttgtatggcc tttgttctat ggcctaatgt tcgcagattt
      901 aggccatgga ttgcttctgt ttggccttgg catgcttctc aggcagagag gaaatggatc
      961 gataaggacg tgggggactc ttctagcagc aagtggtgct gctgctagct tgggaggttt
     1021 gttaacaggc gagttatttg gattccactt atttggtttc gatattctgg ctcccttcct
     1081 taagtattta cccttcgtag g
//
LOCUS       DATLQL010000392         1413 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1339613, whole genome shotgun sequence.
ACCESSION   DATLQL010000392 DATLQL010000000
VERSION     DATLQL010000392.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1413)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1413)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1413
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1339613"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..323
                     /locus_tag="VNB68_04100"
     CDS             <1..323
                     /locus_tag="VNB68_04100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016879 - ligase activity, forming
                     carbon-nitrogen bonds [Evidence IEA];
                     GO_process: GO:0006188 - IMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1297 domain-containing protein"
                     /protein_id="HVD36564.1"
                     /translation="EVGHTPASIRESMLEKVFKIGDKFTSIVRREYPPGIIGPISLQG
                     IVTLDLDIVVYDVSLRVPGNPILTTTSPYAKYYYGYPIGIGRRIAMEIKDAVMQNRLR
                     YVVT"
     gene            complement(331..762)
                     /locus_tag="VNB68_04105"
     CDS             complement(331..762)
                     /locus_tag="VNB68_04105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional nuclease domain-containing protein"
                     /protein_id="HVD36565.1"
                     /translation="MPSHFPEGDEEYVPAKISYVGFADQLGLEGVVILKTFEGKEFPM
                     RAFSGEVARHISRFQEGDKNTIPTIYNLVEEIAVTQDLLLMEVRVYQSGSVLRANLYF
                     KTRKEYLVLRNYRASDSIALAAYYDAPIKVRKSLFEEAIQQ"
     gene            complement(1140..>1413)
                     /locus_tag="VNB68_04110"
     CDS             complement(1140..>1413)
                     /locus_tag="VNB68_04110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36566.1"
                     /translation="AAQHGSGMHDVFDMIARKHGFDESTLSNKYLEILRSREKVGSSQ
                     RYGYLFENEKMWIAEPHVQMYLDSISKTLPTLEQNITAAKPKRREG"
BASE COUNT          427 a          285 c          263 g          438 t
ORIGIN      
        1 tagaagtagg acacactccc gcgagtatac gcgaatcaat gctcgaaaag gtattcaaaa
       61 taggtgataa atttacttca atagtcagga gagaataccc accaggaata ataggaccga
      121 tatcattgca aggcatcgtt acactagatc tagacattgt ggtctatgat gtatcgttaa
      181 gagttcctgg taatcctatt ttgacaacga ctagcccata tgcaaaatat tattatggct
      241 atccgatagg catcggtcgg aggattgcga tggaaatcaa ggatgcagtt atgcaaaaca
      301 gacttcgata cgttgtaact tagtacatct tcattgttgt attgcttctt cgaagagact
      361 cttcctaact ttgattggtg cgtcataata tgctgctaat gcaatagaat ctgaagcacg
      421 atagtttctt agcaccaagt actcttttct ggtcttgaaa tataaatttg ctcgcaggac
      481 agaaccactt tgatatactc tgacttccat aaggagcaga tcctgtgtaa ctgcgatctc
      541 ttctaccagg ttatagatgg taggtatagt atttttatcg ccttcttgga atcgtgaaat
      601 gtgtcttgcc acctcacctg aaaaagcccg cattgggaat tctttgccct caaaagtctt
      661 caagataaca acaccttcca atcctaactg atcagcaaaa cccacataac ttatttttgc
      721 tggcacatat tcttcgtctc cttctggaaa gtgactaggc atagtaccag aatacacatt
      781 gccatgaatt aaggtttaca gtatggccat actaggtatg aaaaagctta gacgttgcac
      841 tcaaaggaat tccttactcg gaactatcgc gataatttct gaagttagct aatgtattaa
      901 aattggtcaa tatcatagca cgagcgatcg aatagaaaag tccaaatggg tttaaaatgg
      961 aacttataac acagcttagt cagtagaagc tatgatacta acacattaag ttgatagagc
     1021 ttcaggaatt gtaatgatgt aatgatgcta tagtaatgaa gcttcggtag gccttatcct
     1081 attccacccc atctatttga atatcaaagt gctagataat acacccaaat atctcttcat
     1141 tatccttctc gcctctttgg ttttgctgca gttatgtttt gttccaatgt aggtagagtc
     1201 ttagaaatgc tatctaaata catctggaca tgtggttcag caatccacat cttttcattt
     1261 tcaaatagat aaccatatct ttgagagcta cctacttttt ctcgcgatcg aaggatctcg
     1321 agatatttat ttgacaacgt agattcgtca aatccgtgct ttctggctat catatcaaat
     1381 acgtcatgca tcccggatcc atgctgtgct gct
//
LOCUS       DATLQL010000393         2207 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_96377, whole genome shotgun sequence.
ACCESSION   DATLQL010000393 DATLQL010000000
VERSION     DATLQL010000393.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2207)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2207)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2207
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_96377"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..250
                     /locus_tag="VNB68_04115"
     CDS             <1..250
                     /locus_tag="VNB68_04115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36567.1"
                     /translation="LADRLNNMKFIYDRAGLNKKIVYDKIKRYLREAEDFYLAYSMLN
                     PKMPIFYRQIRSTYEKLRSAYYEQTLTMPQTEGITSRT"
     gene            414..1328
                     /locus_tag="VNB68_04120"
     CDS             414..1328
                     /locus_tag="VNB68_04120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit beta/FixA
                     family protein"
                     /protein_id="HVD36568.1"
                     /translation="MATEIASLMISSSVNVAVIIKLEPDFSEGSVSYNSDGTLNRAET
                     KSILGPHSAIASLAAFYSKVKYGAYISIATMGPPIADIALKQAQLMSDADELHLYSDR
                     IFAGADTLATAEVLKNGIGKMKGGEKMDIVFSGHRASDGETGQTGPQTAWKLGYTFIG
                     NVIDYDFDPQRRVVIAKRLITLQGFHDIIEEVEAPLPVFITIDPSYKSTFNTVSQRLA
                     YLKYQKEAKERTEEYKKYLKVFNAEQLGVDAKFVGLPGSPTIVYKVEKIPKAKTSRKV
                     DIVDGSDPNHIRNVIKRVHEMLGATIIK"
     gene            1366..>2207
                     /locus_tag="VNB68_04125"
     CDS             1366..>2207
                     /locus_tag="VNB68_04125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit
                     alpha/FixB family protein"
                     /protein_id="HVD36569.1"
                     /translation="MTYNQGRIEETYRHLYVIIEHEEGRIIPVSLEMLGEARRIMDEF
                     NIKYSSDEKVVAVVLGYKVKEICKELILYGADAVIYAESPELKHPRNLADTKVISQIA
                     QDKKCVEQISPNFAEEFKKPRYMFFSADNIGRHLSSTVLAELESGLASDINKLVVGDL
                     EIRHEHKTKGQAIKYEKTLQMYRPDFSGFLWTTILCLDNRNPAIQREYHPQACSIIPG
                     VFSPLQRDSSRTGIILEYLPKLNEQDLKLKILSRKAMKSTVDFDSYKSVVSFGRGIKN
                     SPEE"
BASE COUNT          765 a          384 c          468 g          590 t
ORIGIN      
        1 gctcgccgat aggctaaata atatgaagtt tatatatgat agggctggct taaacaagaa
       61 gattgtgtat gataaaataa aacgttatct tcgagaagca gaggattttt acttagctta
      121 cagcatgtta aatcccaaaa tgcctatttt ttacaggcag ataagatcta cttatgaaaa
      181 attgcgttca gcctattatg aacaaacgct taccatgcca caaaccgaag gaataacaag
      241 cagaacctaa tgataagaaa atagtaatta aattgttatg aatccttgaa aaggtcccaa
      301 aataacagtt cttggttcca acatatcttc cgtagctagc gaagatattc ttaaggaaat
      361 gaagacgcga aaatgtatgt ctaaatagac tatgtagatt ggttattata ggaatggcaa
      421 cggagatagc aagtctaatg atttcatcat cagttaacgt cgcagttata ataaagcttg
      481 agcctgactt ttcagaagga agtgttagtt ataactctga cggcacgttg aatagagcag
      541 agacaaagag tatcttgggg cctcatagtg ccattgcctc acttgccgca ttttatagca
      601 aagtgaagta tggtgcgtac atttcaatag ccactatggg tcctccaatt gctgatattg
      661 cattgaagca ggcccaattg atgtctgatg ctgacgaatt gcacctttat agcgatagaa
      721 tattcgcagg agccgatacg ctagcaactg ctgaggtttt gaaaaatggt ataggaaaaa
      781 tgaagggcgg agaaaagatg gatatcgtct tttctggaca tagagcttct gatggcgaaa
      841 caggccagac tggtcctcaa actgcatgga agcttggcta cacttttatc ggaaatgtaa
      901 tagattatga ttttgatccc caaaggaggg ttgtaatagc gaagcgtcta attaccttac
      961 agggatttca tgatataata gaagaagtag aagcacccct tccagttttt attactatag
     1021 atccttcata caagtcgacc tttaatactg tttcacaacg gttggcgtat ttaaagtacc
     1081 aaaaggaagc aaaggaacgt actgaagagt ataaaaaata tctcaaagtt ttcaatgcag
     1141 aacaactggg tgtcgacgcg aagtttgttg gtcttcctgg ttctcctact attgtgtata
     1201 aggtggagaa aattccaaag gcaaaaacaa gtagaaaggt cgatattgta gatgggtcag
     1261 accccaatca tattcgcaac gttataaagc gggtacacga aatgctaggc gcaacaataa
     1321 ttaaatgatt ctaacaagta tgcaagggat ctgatgctct aacatatgac atacaatcaa
     1381 ggtagaatcg aagaaactta tagacactta tatgtgatta ttgaacatga agaaggaaga
     1441 atcatccctg ttagcctaga gatgctagga gaagccagga ggataatgga tgaattcaac
     1501 ataaagtatt catcggacga gaaagtagtt gcagttgtac tagggtacaa agtcaaagag
     1561 atatgtaaag aactgatcct gtatggagca gacgccgtta tctacgcaga aagtccggag
     1621 cttaagcatc caagaaacct agctgataca aaggtcatca gtcagatcgc tcaagacaaa
     1681 aaatgcgtgg aacaaatctc tccaaatttc gctgaagaat ttaagaaacc gcgttatatg
     1741 ttcttttctg cagataatat tggaagacat ctttcatcga ctgtcctagc cgaacttgaa
     1801 tcaggactcg catctgatat taacaaattg gtagtagggg atctagaaat tagacatgag
     1861 cataagacaa aaggtcaagc tataaaatat gagaaaaccc tacagatgta cagaccagac
     1921 ttttctggtt ttctgtggac tactattcta tgtctcgata accgaaatcc cgcaatacaa
     1981 agagagtacc atcctcaggc atgtagcata attcctggag tcttcagtcc tcttcaacgt
     2041 gatagctcta gaactggaat aatcctagag tatttaccaa aattaaatga acaggatctg
     2101 aaattgaaga ttttgagccg aaaagccatg aaaagcactg tcgattttga tagctataaa
     2161 tctgtggtaa gctttggacg agggatcaaa aattctccag aagaaaa
//
LOCUS       DATLQL010000394         1253 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_96452, whole genome shotgun sequence.
ACCESSION   DATLQL010000394 DATLQL010000000
VERSION     DATLQL010000394.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1253)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1253)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1253
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_96452"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(109..>1253)
                     /locus_tag="VNB68_04130"
     CDS             complement(109..>1253)
                     /locus_tag="VNB68_04130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36570.1"
                     /translation="AWVSDPGGTVNIKGPILLEGGLYHFQVSIFGIDNDRNIFVPENA
                     PKFDSYLSVGDVYRYNVTYQNHNYNTTLISYYDKVKGFKFDPANIVFSWSMPFDWNLS
                     RIKQQNIFVHEEFKVPKAWKGLGDSRSFNATVNGNEISGRSLAIDPFSSKNALIVHYL
                     LNKNEIVKLAEEIQKTQAVNSSGTRGSNNTSNMSSNSLNTPNKNTTPELMLFTLSSNA
                     LNNKSNIQTTSSDLVTDTGGIHVSASWSPLPLSPDTKSKLKINFSDAFASISLNASVK
                     YDLKILDKSGKIILKKENLVAKDATDTQIISFPAKEIYQLEVSIKGLMRPGQAVPDVT
                     RNGVARGIVVVPEFHSLSLLVVMVGSLAAVLLILLHSSELRVRNRF"
BASE COUNT          357 a          239 c          243 g          414 t
ORIGIN      
        1 atttcttcta attattatgt ttcgaatcct cccctgttct tttactattt tagaccactg
       61 tattttacgc gactgtatgc aaggacagac tatgacgcag gatccacatt aaaacctgtt
      121 ccgaactctt agctcactcg agtgtagtag tattaggaga acagcagcta gagatccgac
      181 catcacgact aatagtgaca gcgaatgaaa ttcaggtaca actactatac ctcttgctac
      241 tccgtttcta gtgacatccg ggactgcttg acctggcctc atcaatcctt ttatgctaac
      301 ttctaactga tagatttcct tagcaggaaa agagatgatt tgagtatcag ttgcgtcttt
      361 tgctacaaga ttctcttttt tcagtattat ttttccactc ttatcgagta tcttcagatc
      421 gtatttgacg ctggcattta atgagatcga tgcaaatgca tcagagaaat tgatcttaag
      481 tttagatttt gtatccggcg aaagcggtaa gggtgaccag gaagcagata catgaatgcc
      541 tcctgtatcc gtaactaggt cagatgatgt ggtttgaata ttgcttttat tatttagagc
      601 gttacttgaa agtgtaaaca acatcaactc aggggtagta tttttgttcg gagtgtttag
      661 agagttgctg ctcatattac tagtattatt gctacctctg gtaccactgg aattcactgc
      721 ctgtgttttc tgtatttcct ctgcaagctt tacgatctcg tttttgttta ggagataatg
      781 cacaattaaa gcgttcttcg aagaaaaagg gtcgatggcc agagagcggc ctgatatttc
      841 attgccatta acggttgcat tgaaagatct cgaatcgcct agacctttcc atgctttagg
      901 aactttaaat tcttcatgaa caaagatgtt ttgctgctta atgcgtgata aattccagtc
      961 aaatggcatt gaccatgaaa aaactatatt tgcagggtca aatttaaagc ccttaacctt
     1021 atcatagtat gatataagag tggtattgta attatggttt tgataagtaa cattatatcg
     1081 atagacatct ccaacgctaa gataagaatc aaatttagga gcattttctg gaacaaagat
     1141 atttctatca ttatcaattc caaatatact gacctgaaag tggtatagtc ccccttcaag
     1201 taggataggc cctttgatat ttacggtgcc acctggatcg gatacccagg cat
//
LOCUS       DATLQL010000395         1028 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_984107, whole genome shotgun sequence.
ACCESSION   DATLQL010000395 DATLQL010000000
VERSION     DATLQL010000395.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1028)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1028)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1028
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_984107"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..897
                     /locus_tag="VNB68_04135"
     CDS             <1..897
                     /locus_tag="VNB68_04135"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HVD36571.1"
                     /translation="LLLELPSTPDSAHNGGKILVSPEGYVYLTIGELNRSNAKNSNST
                     ITKAQNHADGMEADGRAGILRITEDGNSVGQGIIGNYHPLDKYFAYGIRNSFGMAFDP
                     LSGNLWDVENGPEFGDEINVVVPAFNSGWNKVQGIWTPDENSPGNITADFGGLYNFNN
                     TGKYITPALSWFQPSPGLTSIIFLNSSKLGSQYVNNLFVSDFHNGNIYNFGLNSSRTG
                     LTLPSVLADKVVNTTNETQSVVFARGFGGITDIELGPDGYLYVLSIYQSGDNCDPVRH
                     PRDPCISYDKSIGGTIFRIIPA"
BASE COUNT          313 a          192 c          219 g          304 t
ORIGIN      
        1 ctacttttag aattgccttc tacaccggac tctgcgcaca atggcggtaa aatacttgtt
       61 agtccagaag gttatgtgta tttgacaatt ggggaactta atcgcagcaa tgccaagaac
      121 tctaattcaa caataacgaa agcacaaaat catgccgatg gtatggaagc tgacggaagg
      181 gctggaatat taagaattac agaagatgga aattcagtgg gccaaggaat cattggaaat
      241 tatcatccat tagataaata ctttgcatat ggtattcgaa acagttttgg tatggcgttc
      301 gatcctttgt cgggcaactt atgggatgtt gaaaatgggc cagaatttgg tgacgagata
      361 aatgttgtag tcccagcctt caatagtgga tggaacaaag tacaaggcat ttggacgccg
      421 gatgagaatt ctccaggcaa tattacggct gattttggag gcttgtataa tttcaataat
      481 acgggtaagt atatcacacc tgcgctttct tggttccaac catctccagg gcttacttcg
      541 ataattttct taaattcaag caaattaggc tcacaatacg tgaataactt gttcgtatct
      601 gattttcata atggcaatat ttacaatttc ggactgaatt ctagtagaac tggcctgaca
      661 ctgccatccg tcctcgcaga taaagtagta aatacgacta atgaaactca gagcgttgta
      721 tttgctcgtg gctttggagg tattactgat atcgaacttg ggcccgatgg ttacttatac
      781 gttctttcca tttatcaaag tggtgataac tgtgatcccg ttcgtcatcc tcgtgatccg
      841 tgcatatcat atgacaaatc aatagggggc acgatattca gaatcatacc ggcctaaaat
      901 ctacaccgaa tgcaaatgcg caaatatggc gggacagaga aaacagactc aacaatcttc
      961 tgcagtaaaa gattcattac ttattcgctt ggattaatcg ttcaatcaaa tggatttatt
     1021 tttattgg
//
LOCUS       DATLQL010000396         1145 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2054088, whole genome shotgun sequence.
ACCESSION   DATLQL010000396 DATLQL010000000
VERSION     DATLQL010000396.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1145)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1145)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1145
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2054088"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            271..651
                     /locus_tag="VNB68_04140"
     CDS             271..651
                     /locus_tag="VNB68_04140"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HVD36572.1"
                     /translation="MPTIVHFEIPADDAERSRKFYSDLFGWKIEKWPGMESGMDYWII
                     NTTDNEGGKAVGGGMMKRQNPQQGITNFIDVTSVDEYSAKVQSLGGKIVAPKQAVPTM
                     GFFAVCLDTENNTFGIWETNPNAK"
     gene            773..>1145
                     /locus_tag="VNB68_04145"
     CDS             773..>1145
                     /locus_tag="VNB68_04145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36573.1"
                     /translation="MQNRQNRQNRQNRHTRILFFEIAFISIVALLLTVSSISNHYTSA
                     QLLNKLGVKIISPTKGQQVQAGGNNLVFSGTSTDDKNSDCKVGVIFNHIKPYQQAVPI
                     GHNGTNDYSTWVYTLKPNYTVV"
BASE COUNT          374 a          219 c          216 g          336 t
ORIGIN      
        1 ccttgcccta attaattatc atcagaaata aaaatgccat aagacatcta tactgcaaaa
       61 acttctcgga ctattaaaca caacagcagt taacaaagat actccttgca aaccggccta
      121 gctggttaag gattagctaa tttcgtgtta taattaacaa atgatcttta cagagcatca
      181 tcgtagcaca aatgtttttt gacaacttcg tcagtatttg tctaatgtcg taatttttaa
      241 ggctctagac gtaatatgtc tcgataagaa atgccaacaa tagttcactt tgagattcca
      301 gcagatgacg ctgagcgctc aaggaaattc tattctgatc tttttggatg gaaaatcgaa
      361 aaatggcccg gaatggagtc aggtatggat tattggataa taaatactac tgacaacgaa
      421 ggtggtaagg cagttggtgg gggtatgatg aaaagacaaa atcctcaaca aggtattacg
      481 aacttcatcg atgtgacatc agtggacgaa tattccgcta aagtacagag tctaggtggc
      541 aaaatagtcg ctcctaagca ggcggttcct accatgggct tctttgctgt ttgccttgat
      601 actgagaata atactttcgg aatttgggaa actaacccga atgcaaagta actttaatgc
      661 aacctgatct catttttcac gctcctaaat ctgcatgctc gttttgatac gagcatgctg
      721 ccgctgccgc ttccttgcaa tgctttaata ctgaaggatt taatgtacga acatgcagaa
      781 tagacagaac agacagaaca gacagaatag acatactaga atactcttct ttgaaattgc
      841 ttttatctca attgttgctt tacttcttac tgttagctct atatctaatc attatacatc
      901 tgcccaatta ctaaacaaat taggtgtgaa aattatatca cctacaaagg gtcaacaagt
      961 acaggctggg ggtaataatc ttgttttttc aggaacctcc acagatgaca agaatagtga
     1021 ttgcaaagtg ggagtcatct tcaatcatat aaaaccatat caacaagctg taccaattgg
     1081 tcataatgga acaaatgatt attcgacgtg ggtatatacg ctcaagccta actacactgt
     1141 tgtta
//
LOCUS       DATLQL010000397         1083 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1873097, whole genome shotgun sequence.
ACCESSION   DATLQL010000397 DATLQL010000000
VERSION     DATLQL010000397.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1083)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1083)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1083
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1873097"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(103..759)
                     /locus_tag="VNB68_04150"
     CDS             complement(103..759)
                     /locus_tag="VNB68_04150"
                     /inference="COORDINATES: protein motif:HMM:NF015438.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HVD36574.1"
                     /translation="MKILSVNIGIPREVPFQGEVVTTGIFKDPVEGRVNLRTLNLDGD
                     RQADLTVHGGKDKAVYSYPVEHYEFWRRELPYTALPWGMFGENFTTEGLLEDIVNIGD
                     QFQIGTAKLIATQPRMPCYKLGVKFGRMDIIKRFLASRRTGIYFKVSQEGDVGAQDPI
                     ELVDHDKNNVTIKDIVQLYVNTSHNENDIQKMKRAINIIDLPEGWRYHFIQKIEQLRK
                     "
BASE COUNT          325 a          202 c          206 g          350 t
ORIGIN      
        1 attcaataga atgttggagc gttatacatt ataaacgaca taattctgag atcatatgag
       61 cagggaatag aaagtgtcca atgcaagagg cagcaacatc atctattttc tgagctgttc
      121 gatcttctga ataaaatgat atctccatcc ttcagggaga tcgataatat ttatggcacg
      181 tttcatcttt tgaatatcat tttcgttgtg gctagtgttt acgtataatt gtactatgtc
      241 tttaatggtg acgttgttct tgtcatgatc aacaagttcg attggatctt gagctccaac
      301 atccccctcc tgacttacct tgaaatatat tccggtccga cgactggcta aaaacctctt
      361 gataatgtcc attcgtccaa attttacacc tagcttgtag caaggcatcc ttggttgagt
      421 agctatcaat ttggctgttc ctatctggaa ttgatcacca atgttaacta tgtcttcaag
      481 caaaccttct gtagtaaaat tttcgccaaa cataccccac ggcaaagctg tatatggtag
      541 ttcccgtcgc cagaattcat aatgctctac aggatatgaa taaacagcct tgtctttccc
      601 tccatgtact gttagatctg cttgtctgtc tccatcaagg tttaatgttc ttagattcac
      661 acgtccttct actgggtcct taaatattcc tgtcgtaacg acttcaccct gaaagggtac
      721 ttcacgcgga atgccaatgt tcacggaaag aattttcatt aaaggaatta gaatcaattg
      781 tctcatttaa agagatagca gaaatccaat atagtgttat tatttatgaa gtcggacttt
      841 taataattgg tcatgtcatc aaactagtct aggtagattc agagaaaatg agaaaatgag
      901 aaggataagc gattcgattg attttctctt ccagaagaac ttaatactca ggacctgata
      961 actactgatt agtacattgc taacgcttta ttgccgtgaa acaggattaa attgtgatta
     1021 cgttgttaat ggtgagactg aagaggaaat attgagaata ggtgcggaac atgtgataaa
     1081 agt
//
LOCUS       DATLQL010000398         1272 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1695589, whole genome shotgun sequence.
ACCESSION   DATLQL010000398 DATLQL010000000
VERSION     DATLQL010000398.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1272)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1272)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1272
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1695589"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..833
                     /locus_tag="VNB68_04155"
     CDS             <1..833
                     /locus_tag="VNB68_04155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009190 - cyclic nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0035556 - intracellular signal transduction
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HVD36575.1"
                     /translation="PEPAPIDHPWRHMPNHAMVPHYSGTTLEAQSRYADGVKRSLTRY
                     MRALPIQAEFLIVDNGKVVSPSYSYAFFFRGHDFLRKQVSSKISLVIMFVDLLGSTKM
                     SMTLPADKLVTIIRAFSHEMSSVVESYDGFVLKYVGDAVQAFFPSGFNKYLTCDKAVR
                     CAESMITVVTTGLNPILSKYDYPALKLKIGIDEGENVVVQYGYDRSSQIDILGYTMNV
                     TAKITSITGPNKISVGENVYKLLHPNTQERFELVSNLGDDWKYVAPDMGEIYKVYTSK
                     "
     gene            1002..>1272
                     /locus_tag="VNB68_04160"
     CDS             1002..>1272
                     /locus_tag="VNB68_04160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36576.1"
                     /translation="MLQATQVAVRSHHVEKLKSLKNAVLNSALQIHPDEDEMLMFLNY
                     IDIFTRWHLKILLFLESKSIRVAYDPDNMPENPICLTGNILEKEYP"
BASE COUNT          390 a          235 c          262 g          385 t
ORIGIN      
        1 ttcctgaacc tgcgccaata gatcatccct ggcggcatat gcctaatcat gcgatggtac
       61 ctcattactc cgggacaact cttgaagcgc aaagccggta cgctgacgga gtgaaaagaa
      121 gtcttacccg ttatatgaga gcacttccta tccaggcaga atttcttatt gtggataatg
      181 gcaaggtggt gagtcccagt tacagctacg cctttttttt tcgtggtcat gattttcttc
      241 gtaaacaggt aagttccaag atatcactag ttattatgtt tgtagaccta cttggctcta
      301 ctaaaatgag catgacactg ccggcggata aactggttac aattatcagg gctttttcac
      361 atgagatgtc ctctgtagtg gaaagttatg acggatttgt actgaagtac gtgggcgacg
      421 cagtccaagc attctttcct tccggtttta acaaatatct tacctgtgat aaggcagttc
      481 gttgtgcaga atcaatgatt actgttgtaa ctactggact taatccaata ttaagtaaat
      541 atgattaccc tgccttgaag ttaaagattg gtatagacga aggggaaaat gtagttgttc
      601 aatatggata cgacaggagc tcacaaattg acatacttgg ttatacgatg aacgtaacag
      661 caaagataac ttccataact ggtcctaaca aaatatctgt aggggagaat gtctataagt
      721 tattacatcc caatacacag gaacgatttg aacttgtatc aaatctcggt gatgattgga
      781 aatatgttgc tcccgatatg ggggagattt acaaagttta tacatccaaa tagaaacatt
      841 aggccgtcta gatgctacgt agatagtctt gcggttcaaa cctatattca taaaaataca
      901 tctcacaaag ttttggttgt ggaaaggcct tatgtcctac aaacgtagtt gagaatttca
      961 gtgtagataa tctatgtcat aatcagattt tcatcagaac aatgttacaa gcaactcagg
     1021 ttgccgtgcg ttctcatcat gtggaaaaat taaagagttt aaaaaatgcc gttttaaatt
     1081 ctgctctcca gattcatccc gatgaagacg aaatgctgat gttcttgaat tatatcgaca
     1141 tatttacgag atggcatctg aagatacttt tgtttctgga atcaaaaagt atacgagttg
     1201 cttatgatcc cgacaatatg ccggaaaacc ccatttgttt aacaggcaat attttagaga
     1261 aggaatatcc tg
//
LOCUS       DATLQL010000399         2076 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1873414, whole genome shotgun sequence.
ACCESSION   DATLQL010000399 DATLQL010000000
VERSION     DATLQL010000399.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2076)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2076)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2076
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1873414"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..653)
                     /locus_tag="VNB68_04165"
     CDS             complement(<1..653)
                     /locus_tag="VNB68_04165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36577.1"
                     /translation="MPIDQVRRGIEWLKFKNLVKIVTETSTYLSTLLKEGTPEAKLPE
                     RKIVELISKIGGDSIDIKDLAKEKEISPSEFNAGLMNALKNGWITKIGTTVTINTSSQ
                     KYSPEEKLLHRLLKEEQINISNLGNDEIRAYESLRKRPGYICEKNVSNHKIHLLQAGH
                     NISQTLTQSDSEVEVIKITSELLRSGKWKHLKFRGLDVSSPVQNHSLGRTHPLTDLI"
     gene            834..1985
                     /locus_tag="VNB68_04170"
     CDS             834..1985
                     /locus_tag="VNB68_04170"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HVD36578.1"
                     /translation="MTHEFRNESAGNEANEFDVTPWSVNGSVNYENLIEKFGTQRITA
                     DLLKKLASMTGEIHPLLELDFFFSHRDFDWILDRYQKGEKFYLYTGRGPSGKVHLGHL
                     MPWMFTKYLQDKFDAPLLFQLTDDEKFLHGHNKTMTEISAFTDENILDIIAIGFKPEK
                     TRIIVDTKHIKRLYPMALEIAKRITFSTARAVFGYTNSTNIGMIGFPPIQGVPCFLPS
                     LIENKPTPVLIPAAIDQDPYWRITRDVAEKMGYYKPAQIHSKFLPSLETSGKMSSSKP
                     KTAVFTTDDSETVEDKISVAFTGGQPTVALQRKLGGNPDICPVFSYLQYMFDNPKESK
                     ERALKCRSGNLLCGECKQDLSDNSVAFLTDFQKRREKAKDMVSQFMYEE"
BASE COUNT          641 a          396 c          407 g          632 t
ORIGIN      
        1 cttatcaaat ctgtcagagg gtgggtcctg ccaagactat gattctgaac tggagaagaa
       61 acgtccaaac ctctgaattt caaatgtttc catttgccag aacgcaataa ctcggaggtg
      121 attttaataa cttcgacctc agaatcagat tgtgttaatg tttgagaaat attgtgtcct
      181 gcctgtaata aatggatctt atggttacta acattttttt cacatatata cccaggtcgc
      241 ttccttagcg attcataagc tcggatttca tcatttccca aattcgatat gttaatctgt
      301 tcttctttca ataacctatg taataatttt tcctcaggag agtatttttg agaagatgta
      361 ttgatagtaa cagtagtacc aatttttgtg atccaaccgt tttttagcgc attcattaaa
      421 ccggcattaa attctgaagg agaaatctct ttctccttgg caaggtcctt tatatctatt
      481 gaatcaccac caatctttga gatgagttct acaatctttc tttcaggcaa ttttgcttcg
      541 ggtgtccctt ccttcaaaag tgtgctgaga taggtagatg tctcggtaac gatctttact
      601 agattcttaa actttagcca ttcaattcct cgtcgtactt ggtctattgg catgctcaat
      661 tcttttgtaa tagtattcat ctcggcagat tgagtaggtc tactgcttag tagaagaaga
      721 attttccttt cgataggatg taaagaaggc tgagtcatct gaagatgaaa gaatcaggag
      781 gggtacactt tttaaacctt taaacctcag ttcatattag cacagaaact gacatgaccc
      841 acgagtttcg aaatgaaagc gcaggaaatg aagccaacga atttgatgtt actccttggt
      901 cggtcaatgg ttcagttaac tatgaaaatc taatcgaaaa atttggaact caaaggataa
      961 cagcagacct attgaaaaag ttggcgtcta tgactggcga aattcatccc cttttagaac
     1021 tcgatttttt cttctcacat cgtgattttg actggatact ggataggtat caaaagggag
     1081 aaaaatttta tctttatacc ggccggggtc cttcgggcaa ggttcactta ggtcatctga
     1141 tgccttggat gtttactaag tatctgcagg acaaattcga cgccccgctg ctgttccaac
     1201 taacggacga cgaaaaattc ctacatggac acaacaagac gatgacggag atatctgctt
     1261 ttactgatga gaatatttta gatattattg cgatcggatt taaaccagaa aaaacaagga
     1321 tcatagtcga taccaaacat attaaacgtc tttatcccat ggcacttgaa atagcgaaac
     1381 ggatcacttt ttctacagca agagccgtgt ttggctatac aaattcaact aatataggta
     1441 tgataggatt tcctccaatc caaggagtgc cttgtttttt accttcattg attgaaaata
     1501 aaccaacgcc agttttgata cccgcagcaa ttgatcaaga tccttattgg agaataacac
     1561 gtgatgttgc ggagaaaatg ggttattata aacctgccca aatacatagc aaatttttac
     1621 catcactaga aacatctgga aaaatgtctt cctccaaacc taaaaccgcc gtatttacaa
     1681 ctgatgactc tgaaactgta gaagataaga tctcagtcgc gtttaccggt ggacaaccaa
     1741 ctgtagcgtt gcagaggaaa ctaggcggca atcctgatat ctgtccagtc ttctcttatc
     1801 tacagtatat gtttgacaat cctaaagaat cgaaggagag agcgttaaag tgtagaagcg
     1861 gaaatctatt atgtggcgaa tgtaagcaag acctctcgga taactctgta gcgttcctca
     1921 ctgattttca aaaacgtaga gaaaaggcca aggatatggt gtcacaattc atgtatgagg
     1981 agtaaataga gataacctca agaggattga tgaaaaattt ggcaggttct gtcactcttg
     2041 aatgccttga tacttatgag gcagaaaaac ttgaag
//
LOCUS       DATLQL010000400         1745 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_455741, whole genome shotgun sequence.
ACCESSION   DATLQL010000400 DATLQL010000000
VERSION     DATLQL010000400.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1745)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1745)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1745
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_455741"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            326..619
                     /locus_tag="VNB68_04175"
     CDS             326..619
                     /locus_tag="VNB68_04175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36579.1"
                     /translation="MENHNANEAGETMRYNRHFSGNDRFAVANSSTCRLYTLSNQTAE
                     GNHQVFRNIEIGLQKRIPEVKSGQCLHMSSDNNLGSEKKRKKGILVQESTDND"
     gene            complement(795..1019)
                     /locus_tag="VNB68_04180"
     CDS             complement(795..1019)
                     /locus_tag="VNB68_04180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36580.1"
                     /translation="MAERKNTGQEKENNSTTIKAAGADEQYLDLTSGKEPHDLTPRQR
                     TCDVCGLTARNKEELQDHINHAHAAITDVK"
     gene            complement(1264..1464)
                     /locus_tag="VNB68_04185"
     CDS             complement(1264..1464)
                     /locus_tag="VNB68_04185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36581.1"
                     /translation="MYITDHTRRECESGSESVTAGDQYKPTFFNPAFFMFAAGVGWYF
                     ATSSIKSNCTGKPLLGPIHLMD"
BASE COUNT          506 a          330 c          340 g          569 t
ORIGIN      
        1 cgcctatcgt agggtggcac atcgccaaat tttgtaaagc gcgaatcaag aaattcctct
       61 atcttttcta tctccttgct ctgggcaagc tgaaaatatt tgtaaataaa gtgtcttatt
      121 ttaagggact ctatagatgc caattatgtt cattaaataa tagggaatag aatttttata
      181 gctttacgac ttccgttatt tacgggagcc tgcttatatt ataaatacaa ttaaatattt
      241 tggaaattgt cttcaatgaa atattcttgt gcagattttg atttgttatg ttgtacacca
      301 caactctcga gatgggttga tggttatgga gaatcataac gcaaatgagg cgggggaaac
      361 aatgagatat aatcgccatt tttccggtaa tgacaggttt gcagttgcta actcaagtac
      421 ttgtagactt tacacattat ccaaccaaac tgctgagggc aatcatcagg tgttcaggaa
      481 tatagaaatc gggctgcaaa aacgaattcc agaagtaaag tcaggtcaat gtttgcacat
      541 gtcttcagat aacaatctcg gttctgaaaa gaaaagaaaa aaaggcatac tcgtacaaga
      601 aagtacggat aatgattaag tttggaatca cacccttatg gtgcggaacc gaccagcctt
      661 cgtatggaga cattcaattg ctgcacttat tattagacaa gtctccaatt gtatggtctc
      721 tttgcacatt gaatgtttct atgggcggct ctagttcttg aatatgcgat catagagcat
      781 aactaataga gggtctattt tacatcagtt atagctgcat gtgcatgatt aatatgatct
      841 tgtaattcct ctttattgcg agctgtcaag ccacaaacat cgcaagtccg ttgccttggc
      901 gttaggtcgt gtggttcttt tccacttgta aggtccaagt attgttcatc agctcctgca
      961 gcctttattg tggtagagtt gttttccttc tcttgacctg tattttttct ttcagccata
     1021 aatgatagta tcagtcatta tatcctctac catatcttta tctcttacct ttttgtatct
     1081 tcatcaagtc gaaggataca ttggcataaa ggttgttttt attacattag cagaagttgg
     1141 caagctaagg gataattaca tctattataa tccgcagctg ataatgattt ttaactactc
     1201 gtattattcg aattactctg cataggatca caatgggcta gtaagcatct tcatgtttta
     1261 gacctaatcc atcagatgga tagggccaag gagaggttta cctgtacaat ttgacttgat
     1321 agaacttgtt gcgaagtacc aaccgactcc tgctgcaaac atgaaaaaag caggattgaa
     1381 aaaagtgggc ttgtattgat caccagctgt aacagattct gatccacttt cacattctct
     1441 tctagtatga tcagtaatat acatacaact tctgagccgt cttcttcaaa gctcgcggct
     1501 actctgaata agatagcata agatacagcc tcatccagtg tcatcgatag agtaatgcca
     1561 cttatgctgg tgctcctctt tcaaattcgt tggttaatat ttggctgata tcacacaatg
     1621 tccctaggtt taacatagtg aaagccgatg ctactgcttc ttctgcaggg atatctatca
     1681 cataggatag cctttacgat atagtttacg ctttagaggg cttcgctgtg agtatatacc
     1741 gcaag
//
LOCUS       DATLQL010000401         3909 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1873683, whole genome shotgun sequence.
ACCESSION   DATLQL010000401 DATLQL010000000
VERSION     DATLQL010000401.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3909)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3909)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3909
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1873683"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..693
                     /locus_tag="VNB68_04190"
     CDS             <1..693
                     /locus_tag="VNB68_04190"
                     /inference="COORDINATES: protein motif:HMM:NF014342.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HVD36582.1"
                     /translation="KEIGVKLIHSVDECTSVQIYYKYKKKLKPHAAFLAAAGAITDYL
                     ETKPKASTIVSKYDRQFLMLEASALSYMISSGQNETEFLSAIIEKLSDMKYPHDIEEG
                     FDRAKKYAQKVSNAVKSIEDRISIGNHLAYLESNVELSSSLIVNFVLGLSGKSVALVY
                     RFKADINSYIISIRGSKECMVHLGRAVNLISSDLGGSGGGHDRACGAVIPKERMKKFI
                     EKLDAVISNNKN"
     gene            1073..1333
                     /locus_tag="VNB68_04195"
     CDS             1073..1333
                     /locus_tag="VNB68_04195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36583.1"
                     /translation="MKDTRLVKILVEEKALVKLLKTIGRGREYATRELLTKLGAYGYG
                     HKLLLKAQKRGLVERKTVKNKVFNKLTSDGKKIVMIAKEIGV"
     gene            complement(1371..2048)
                     /gene="tpiA"
                     /locus_tag="VNB68_04200"
     CDS             complement(1371..2048)
                     /gene="tpiA"
                     /locus_tag="VNB68_04200"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004807 - triose-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HVD36584.1"
                     /translation="MKLFSRPLIINLKNYLEIGGNDSIKFARKATGVQKKYDVDIIIS
                     PPISSLLAVSNITKLPVVSQHVDDEYVGPSTGFIVPEIIKSCGAVGSIINHSEHKIDL
                     LTVKNLIKRLRGLDLISIVCAADVGEVNKISAFSPDYIAIEPPELIGKGIAVSKANPS
                     IISMSVKAVRNNSTTTRMLCGAGIVNKSDVTKALELGADGILVASGIIKSSSWYHKIE
                     ELSSAFV"
     gene            complement(2069..3154)
                     /locus_tag="VNB68_04205"
     CDS             complement(2069..3154)
                     /locus_tag="VNB68_04205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-1,6-bisphosphatase"
                     /protein_id="HVD36585.1"
                     /translation="MKVTVSAIKADIGSIGGHTRPSDELLESVKQTVKEYAQNLYDYY
                     VGFTGDDIHIIMSHAKGPDNKEIHKLAWDAFTEATKIAKGQGLYGAGQDLLKDAFSGN
                     VRGMGPGVAEIEMEERPSEVFSIFAADKTEPGAFNFPFWRMFVDARSSTGLLINESLA
                     EGVLFRIMDVMSGKVADLKMWQDKPELEAALMYPGRYVVHSVFSYDGEQILSASTDRL
                     HNIAGTYVGKDDPIAIVRTQKNFPATEEAGSAFNEPHFVAGNTRGSHHMPLMPVKVNS
                     SASINYSIPIVSCLVFSMHNGIFTGPHDGFGTVDWDLQRMWAAERAMIMRNQGFVHPA
                     TLVPEELEYNKGYEARMAKLNNKFKEL"
     gene            complement(3568..>3909)
                     /locus_tag="VNB68_04210"
     CDS             complement(3568..>3909)
                     /locus_tag="VNB68_04210"
                     /inference="COORDINATES: protein motif:HMM:TIGR01727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015440 - ABC-type peptide transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide/dipeptide ABC transporter
                     ATP-binding protein"
                     /protein_id="HVD36586.1"
                     /translation="LSIIFISHDLSVISELAESVGIMYAGQLVELGSTRVVYSNPKHP
                     YTQKLIATIPRIKDKDNSLQFLKGKPPDMADLQKGCRFLDRCSFAMEICNKDPPFFDY
                     ENVKVRCWLYK"
BASE COUNT         1209 a          753 c          729 g         1218 t
ORIGIN      
        1 aaggaaattg gcgtaaagct cattcatagc gttgatgaat gtaccagtgt ccaaatatac
       61 tacaaatata agaaaaaact taagccacat gcggctttcc ttgccgctgc aggagccatt
      121 accgattatt tggaaacaaa acctaaagct tccacaatag tttcgaaata tgatagacaa
      181 tttctgatgc tcgaagcatc agctttatcg tatatgatct cttcgggtca gaatgaaaca
      241 gaattcttat cagctataat tgaaaagcta tcggatatga aatatcctca tgatattgag
      301 gaaggttttg atagagccaa aaaatacgcg caaaaagttt ccaatgccgt aaagtctatt
      361 gaagatagga tatcgattgg aaatcatctt gcatatctcg aaagtaacgt tgaattgtct
      421 tctagtctga ttgtcaattt tgtcttaggc ttatccggga aatcggtggc cctagtctac
      481 aggttcaaag cggacataaa ttcctacatc atatcaataa gagggtcaaa agagtgcatg
      541 gtacatctgg ggagggctgt taacttaata tcctctgatc ttggagggag cggtggcggt
      601 catgataggg cttgtggggc agtaatacca aaagagagga tgaaaaaatt tattgaaaaa
      661 ctagacgcag taatctcaaa taataagaat tgatgaatgt gacattaatt agtaacacca
      721 atgtattttt catcaagtaa aaacttttca ttatctttga gtcagttatg atggtctcat
      781 attactttga ataaatctag gaaagacctt cgtggtattg ttcaggataa aatttccatc
      841 tgtttagtta aatacaacaa tcctttaatt tggataaaat atagagccaa gagataacgt
      901 tcttagatta agatgcgact cttaatttag cgacagaatc gaagtaatat ttggtccttc
      961 cagatatcac agatgttata taagttcaac ttcattacat aatgtaaaat tactattaac
     1021 cacgtttcca ataacgtaca acgattatat aatatccatt tagaattaag gaatgaaaga
     1081 tacaagatta gtcaaaatat tggtggagga aaaagctttg gtcaagctgc tcaagactat
     1141 aggtcgggga agggaatatg ccacgagaga actgttgaca aagttaggag catatggata
     1201 cggacacaaa ttacttttaa aggcacagaa aaggggactg gtagaacgaa aaactgttaa
     1261 aaacaaggtc tttaataaat taacgagtga cggaaagaaa attgtaatga ttgcaaagga
     1321 aataggcgtc taattgattc actaaacaag gactaaaata atttgaagca ttaaacaaat
     1381 gctgatgata attcttcaat cttgtgatac catgatgatg atttaattat tccacttgca
     1441 acaagtatgc catcggctcc tagttccaga gcttttgtaa catcgctttt atttactata
     1501 ccagcaccac agagcattct cgtggtggta gaattatttc gtactgcctt aactgacata
     1561 gatattattg atggatttgc cttagagact gctatgccct ttccgattag ttctgggggt
     1621 tctattgcga tatagtcagg agaaaaggct gaaatcttat tgacttctcc tacatcagcg
     1681 gcacagacaa ttgatatcaa atcgagtcct ctaaggcgtt tgataaggtt tttgacggtc
     1741 agcaaatcaa ttttgtgttc gctatgattt attattgatc cgacagctcc acaggactta
     1801 atgatttctg gtacaatgaa accagtagag ggacctacat attcgtcgtc cacatgttgt
     1861 gacacaactg gcaacttggt gatgtttgaa actgcaagta agctactaat tggaggggaa
     1921 atgataatat ctacgtcata ttttttctgg acaccagttg ctttccttgc aaattttatt
     1981 gaatcgttac caccgatttc aagatagttt tttaaattaa ttatgagcgg tctggaaaat
     2041 agtttcatga taacgctttt taagaaattt acaattcttt aaatttattg ttaagctttg
     2101 ccattcttgc ttcatatcct ttgttgtatt ccaactcttc tggtaccaga gtagcaggat
     2161 gcacaaaccc ttgatttcgc atgatcattg ccctctccgc agcccacatc cgttgaagat
     2221 cccaatcaac agtaccaaaa ccatcatgag gtccagtgaa gatgccatta tgcatactaa
     2281 agacaaggca tgaaactatt ggaatcgaat aattaatact tgcagaggaa ttaaccttca
     2341 ccggcatcaa gggcatgtga tggcttcctc tcgtgtttcc agcgacaaaa tgaggttcat
     2401 taaacgcgct gcctgcctct tccgtagctg gaaaattctt ctgagtacgg actatggcaa
     2461 ttggatcgtc ctttccgaca tacgttccag ctatgttgtg taatctgtca gttgacgcag
     2521 atagaatctg ttcaccatca taagagaaga ccgaatggac aacgtatcga ccaggataca
     2581 tcagtgctgc ttccaattca ggcttatctt gccacatttt caaatccgct acctttccag
     2641 acattacatc cataattctg aacaacacac cctctgccaa actttcgtta attagaagac
     2701 cggtactact tcttgcatca acaaacatgc gccagaaggg aaaattaaat gcgcctggtt
     2761 cagtcttgtc ggctgcgaag atactgaata cttcactagg tctttcttcc atttcgattt
     2821 cggctacacc tggccccatt cccctcacat ttccagagaa ggcatccttc aacaaatctt
     2881 gacctgcgcc gtagagtcct tgtccttttg caattttagt agcttcggta aacgcatccc
     2941 aagcaagttt atgaatttct ttattgtcag gtccctttgc gtgactcatt attatgtgga
     3001 tatcatctcc ggtgaaacca acataatagt catagagatt ctgagcatat tcttttacag
     3061 tctgctttac actttccaat aattcatcac ttgggcgtgt atgtccacct atagatccta
     3121 tatccgcctt tattgctgaa accgtaactt tcatgctgcg ttatttaatt ggtggacttt
     3181 aaaattcttg tgatttgaat tttcttctta tcgtatttgc cgtatttgct ctcgttttta
     3241 tctgtgtcta gaacgcgctg aaagtaaatg catattctag tagttcagct taactaagaa
     3301 tctattttgc atctcaaaat gcatcataac tatactagtt tgataactgg aagcataaat
     3361 gtactggtgg acgaagtttc aatttccatt gacaaaaatt tcctcgccag tgactagcca
     3421 taattactag agatccatta aattatcaat cccaacgctc aaatgtccta gtttccattg
     3481 acataacatt tcatgaactc gggatttcaa tcacctcatt ttgccttttg tccaggatta
     3541 aaagtcgcac gtgactttga taggaggtca tttatacaac caacagcgaa ccttgacatt
     3601 ttcgtagtca aagaagggtg gatctttatt acatatctcc atagcaaagg aacatctgtc
     3661 aaggaatcta catccttttt gtaggtcagc catatcaggt ggttttcctt ttagaaattg
     3721 caatgaatta tctttgtcct tgattcgtgg aatggtagca atgagctttt gtgtatatgg
     3781 atgcttagga tttgaataaa cgactcgtgt acttcccagt tcgactagtt gccctgcata
     3841 cataatacct acagattccg ctaattccga aatcacactc aaatcgtgag aaataaatat
     3901 tatggacaa
//
LOCUS       DATLQL010000402         1073 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2411211, whole genome shotgun sequence.
ACCESSION   DATLQL010000402 DATLQL010000000
VERSION     DATLQL010000402.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1073)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1073)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1073
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2411211"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(186..683)
                     /locus_tag="VNB68_04215"
     CDS             complement(186..683)
                     /locus_tag="VNB68_04215"
                     /inference="COORDINATES: protein motif:HMM:NF019095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHRD domain-containing protein"
                     /protein_id="HVD36587.1"
                     /translation="MFALLAALATAGIATSLTSSVFAQEQKFMAKLSGQEEVPPTNSQ
                     AAGMAEFTVMGDNVKYSLNASNIEAATAGHIHSGKQGENGPVVVTLFKSESPTNEVSE
                     TGSITADKLEGPMAGKQLTDLATAMSNGETYVNVHTEQNPDGEIRGQISSSSAAMTTG
                     GNSTG"
     gene            831..>1073
                     /locus_tag="VNB68_04220"
     CDS             831..>1073
                     /locus_tag="VNB68_04220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36588.1"
                     /translation="MFYRDATASTIIFVILFFNILSSSVFYYQPVDEKTANATVDRNY
                     PESSLPSPSGPTIIDPNLKAEVVFRGLAYPTDIAFLG"
BASE COUNT          292 a          222 c          190 g          369 t
ORIGIN      
        1 aagaagaacc agaactagag aaagtggaag agcaaccctt agtggcttaa gtaaaagaca
       61 gatcacaatt aaagaaggtt atttcttccc tttctttatt tgaaaattcg ttttttatta
      121 tttaacgaaa ccattttaaa aataaaaatg taggacatcg ttttaggtta tgatttgttc
      181 ttttattaac ctgtactgtt tccacctgtc gtcattgctg cactactgct agaaatttgt
      241 cctcgaattt ctccatccgg attttgctct gtatgtacat tgacgtatgt ttctccattg
      301 ctcattgcag ttgccaagtc agttaattgt ttaccagcca ttggcccctc gagcttatca
      361 gctgttattg agccagtttc tgatacttca ttggtaggag actcactttt gaataatgtt
      421 actactacag gcccattttc tccttgttta ccgctgtgga tatgccccgc agttgcggct
      481 tctatgtttg aagcattaag gctatatttt acattgtctc ccattacagt gaattcagcc
      541 atacctgctg cttgagagtt tgtaggtggt acctcttctt ggccggaaag tttagccata
      601 aatttttgtt cttgtgcaaa taccgagctt gttaagctgg ttgctattcc tgcggtcgcc
      661 aatgccgcta agagtgcgaa catgactcca attatcttga tagacattct ctaatgatgc
      721 actgaatagt atttaaccaa attcccaaat tccacccaat ttgaggcatg tattatgact
      781 gcaatacctg atctttttat tagtagagtg tcatcatgtt ccactaatcc atgttttata
      841 gagacgccac tgcaagtaca atcatatttg taatattatt tttcaacatc ctttcgtcca
      901 gtgtatttta ctatcaacca gttgacgaga aaacagctaa tgccacagta gacagaaatt
      961 atcctgaaag cagcttaccc tctcccagtg gacctactat aatagatcct aacttaaaag
     1021 cagaagtggt tttcagggga cttgcatatc ccactgatat tgcattttta ggt
//
LOCUS       DATLQL010000403         1261 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2230226, whole genome shotgun sequence.
ACCESSION   DATLQL010000403 DATLQL010000000
VERSION     DATLQL010000403.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1261)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1261)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1261
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2230226"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            640..1233
                     /locus_tag="VNB68_04225"
     CDS             640..1233
                     /locus_tag="VNB68_04225"
                     /inference="COORDINATES: protein motif:HMM:NF012464.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HVD36589.1"
                     /translation="MKYAFAYLRVSTEEQTVQNQKLSLEKWAQRNDYLILDSFEDPAI
                     SGKIPATQRRGFQEMLELVKMTRVDAILVYELSRVGRTFWDTLDAIKAVEHYTSLISC
                     SPRESFLQTTESSIRKLMIGILTWAAERERELLVQRKKDGMDRAKAAGKGIGRPQKVV
                     DKNELITLLAENHAKTRIAKSLGISKATLYKKLRELR"
BASE COUNT          405 a          251 c          255 g          350 t
ORIGIN      
        1 ccctaaggac tttttgcata caatagcgaa tgaagactgt atccgtcatg gtttcctgca
       61 agttgcagcg ggtaattaaa atttcggtcc taaacccaat gttaacgaat atttctaaat
      121 tcgagtttag aaatattcat agaggtgaat gtaaaaagct tcccaataat tttaactgca
      181 tgacagactg taggatgttc ccaggatgtt ttgaaattta tcactaactg caaatagact
      241 aggaaatact ttcaactatt gctagctagt atacattaga tactccatgt tgcgaaatca
      301 ctgtttcctg tagtaattaa tattctagtt ctttctaagt cgcgtccttt tccaaaatta
      361 ggtcataaaa gggggcccca gacagccgaa aaagagtcat tcttagtaga tcatttctta
      421 ctagatgcgg aaactagaaa atgcgaattt cgtcggctaa acggatcgcc caaagcagtt
      481 caaaaatgga acgttttcta tactggacaa aaatcaatac ccttttttta ctcttgcttt
      541 acagtacttt ccaaccgagc tgtccattta catattccac cctttttgaa cacttttctt
      601 aaccattagc taattaaatt gccccacata ggagctaata tgaaatatgc cttcgcctat
      661 ctgcgcgtaa gtacagaaga acagacggtt cagaatcaga aactatctct cgaaaaatgg
      721 gcacaacgaa acgattacct aatcttggac tcttttgaag atcctgctat cagcggtaag
      781 attccagcta cccaaaggcg cggatttcaa gaaatgcttg agctggtaaa aatgacacgg
      841 gtggatgcca ttttagtgta tgagctatca cgtgttggaa gaactttctg ggacacgcta
      901 gatgcgataa aggcagtgga gcactacacg tctttgattt catgctcgcc tagagaatca
      961 tttcttcaga caacagagtc cagcattaga aaactcatga ttgggatcct gacatgggct
     1021 gcggagagag aacgtgagct tttagtccag aggaaaaagg atggcatgga cagagccaaa
     1081 gcagcaggaa aaggaattgg tcggcctcaa aaggtagttg acaagaatga gctcatcaca
     1141 ttgcttgcag aaaatcacgc gaaaacaaga atagcgaaga gtcttggcat ttcaaaagct
     1201 acgctttaca agaaattaag ggagctaaga tagtttctcg attttcctta ccaatttaag
     1261 c
//
LOCUS       DATLQL010000404         1277 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2230302, whole genome shotgun sequence.
ACCESSION   DATLQL010000404 DATLQL010000000
VERSION     DATLQL010000404.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1277)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1277)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1277
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2230302"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1277
                     /locus_tag="VNB68_04230"
     CDS             <1..>1277
                     /locus_tag="VNB68_04230"
                     /EC_number="2.1.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004372 - glycine hydroxymethyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0019264 - glycine biosynthetic process from
                     serine [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HVD36590.1"
                     /translation="KHHNWFKSSIPLIASENIPSPAVREAIVSYFGNRYAEGWPGERV
                     YAGCIYIDEVEIICNELAKKVFKSEFADCRATSGVVANLAIYSAFSNPGDYMLAASIP
                     TGGHISHGKKEHSGTAGLVHGLNIEHYPFSKEDMTIDVDATKKKVSEMISNGKKPAIA
                     MFGGSLFLFPHPVKELASFMHDNSIYINYDGAHVAGLIAGGQFQDPIGEGTDSMTMSS
                     HKTLWGPQGGIIVSLERHADSIKKAIFPGNTSSHHLHHVAGKAIALAESLEFGKEYAK
                     QVISNAKILAESLANFGFRVLGEKRGYTESHQLAVDVSNYGDGGTIEKELEKSNIILN
                     RQLLPGDIKSGKHYMHPSGVRIGVPEVTRLGMKESEMKEIASFIKQIVIDKSDPNKVG
                     SAVSKFREQFQKVHYAFENATDAYEYIKIRTLR"
BASE COUNT          434 a          226 c          275 g          342 t
ORIGIN      
        1 aaaagcatca taattggttt aaatcctcca tacctttaat tgcaagtgaa aatattccaa
       61 gtcctgcagt acgcgaagcg attgtgtctt actttgggaa taggtatgca gaaggatggc
      121 ctggtgaacg ggtctacgct ggatgtattt acattgatga ggtggaaata atatgcaatg
      181 aattagcaaa aaaggttttc aaatctgaat ttgctgactg tagagccacc tctggagtag
      241 ttgcaaatct tgcaatatat tctgcttttt ctaatcccgg agactacatg ctagccgcat
      301 ctattcccac tgggggacat atttcacatg gtaagaaaga acactcgggg acagctggtc
      361 ttgtgcacgg actaaacata gaacactatc ccttctccaa agaagatatg actatcgacg
      421 ttgatgccac caagaaaaag gtcagtgaaa tgatttcaaa tggcaaaaaa cctgctattg
      481 caatgtttgg aggaagtcta ttcctttttc ctcatccagt taaagaattg gctagtttta
      541 tgcacgacaa tagcatttac atcaattatg acggagctca tgtagcggga ttgatagccg
      601 gaggacaatt tcaagatcca attggagagg gaacagattc tatgacaatg agctcccaca
      661 agactctctg gggtccacag ggaggaataa tcgtttcact agagcggcac gcagatagca
      721 taaagaaagc tatttttcca ggaaatacaa gcagccatca tctccatcac gtagcaggaa
      781 aagctatagc attagcagag tccttagaat ttggaaagga atatgcaaaa caagtcataa
      841 gcaatgcaaa aatacttgct gaatcgcttg caaattttgg ttttagagtt ttaggagaaa
      901 aacgtggata cacagaatca catcaactgg ctgtggatgt ttccaattat ggggatggag
      961 gaactattga aaaagaatta gagaaatcaa acattattct taaccgacag cttctacctg
     1021 gtgatatcaa atctggtaaa cattatatgc acccaagtgg agtaaggata ggtgttcctg
     1081 aagtaaccag attaggtatg aaggaaagtg aaatgaaaga gatagcatcg tttatcaaac
     1141 agattgtaat agacaaatca gatcccaata aagttggtag tgctgtgtcc aagtttcgtg
     1201 aacaatttca aaaagtacac tatgcctttg aaaatgcgac tgatgcttac gaatatatta
     1261 aaatacgaac tttaaga
//
LOCUS       DATLQL010000405         2207 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_986327, whole genome shotgun sequence.
ACCESSION   DATLQL010000405 DATLQL010000000
VERSION     DATLQL010000405.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2207)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2207)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2207
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_986327"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(187..516)
                     /locus_tag="VNB68_04235"
     CDS             complement(187..516)
                     /locus_tag="VNB68_04235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HVD36591.1"
                     /translation="MNRIETRNENNRGKIEIMADVVDLCKSGIKKTHIMYKGNLSYEQ
                     INRYLQELLKKGFIRQDVDEGVIVYRTTEKGRLFIHYYTLMTDTLLDDTRNDVKPNEP
                     MPLIVDR"
     gene            complement(748..963)
                     /locus_tag="VNB68_04240"
     CDS             complement(748..963)
                     /locus_tag="VNB68_04240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36592.1"
                     /translation="MIFKINTTFSKFIRIWLPLVAVGVVISFAISAALRIPLVQALTA
                     IGLTAALALSGLLFRSLGKEDDRSGKE"
     gene            complement(1125..1583)
                     /locus_tag="VNB68_04245"
     CDS             complement(1125..1583)
                     /locus_tag="VNB68_04245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36593.1"
                     /translation="MEQSNGIKVAIIVLVAAGLAVTPAYYNQNISASKAYELKGVGKG
                     TLSCSDGSKVNNARISFFVFYQNDGTFAEWNVDHKTLGSKGGIFTKESITSDKYNLKG
                     VQAFDNICDSKDTVKITLSGSCGDGSKAKLQGDNGDKGVFKVRAQCLAVQ"
     gene            complement(1856..2092)
                     /locus_tag="VNB68_04250"
     CDS             complement(1856..2092)
                     /locus_tag="VNB68_04250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36594.1"
                     /translation="MDYMLSAGAAALTNIGLLGAIVATYVQNMRLIRSYFTGGLVFVT
                     SLFIIQNIVIVIFWSKLYVAGPSIKGIVDAAAPY"
BASE COUNT          648 a          444 c          393 g          722 t
ORIGIN      
        1 cctagaaaca cgcgtaagca atattgttcc taaaaatatt gttaatttta ggtttgcttt
       61 ctgtggaacg aagacgagtt agtgatactt aagaaaaatg tacaaccaaa tttggcttca
      121 tttcgttaca tcgacgattt aaaacaacaa gtaaccctgg tgttgcatgc ctcagttatg
      181 tggatactac ctgtccacaa ttaaaggcat aggctcatta ggcttgacat catttctagt
      241 atcatctaga agggtatctg tcatcagagt gtagtaatgg ataaaaagtc tgcccttttc
      301 agtagtcctg tatacaatca cgccctcgtc aacatcctga cgaatgaaac cttttttcag
      361 gagctcctgc aagtatctat taatttgctc gtagcttaag tttcccttgt acatgatatg
      421 ggttttcttg atacctgatt tacagaggtc tactacatca gccattatct cgatctttcc
      481 tctattattt tcattcctag tctcaattct attcatagaa ttgtaattgt actgccaatt
      541 aattaggaca agcatggaac gtactttgga acgtgcgttc cgtgctatca gaaagaacaa
      601 gcactctttt tgagctagaa ttgattagtt aataattaac ttgccgagaa tatgattgaa
      661 aaattccggc atgggactta agggaaataa atacacaatg gtgtacgatg aaacgatcaa
      721 ctaattccag tgatttcgaa atttcgatta ttctttccca gaacggtcat cctctttccc
      781 taaagatctg aataacaacc cgctgagggc gagtgcggca gtgaggccta tggcagtgag
      841 agcttgtacc aatggaatcc ttaatgcagc ggatattgca aacgagatca ctactcccac
      901 agcgacaaga ggcaaccaga tgcggataaa tttggaaaat gtagtattta tcttgaaaat
      961 cactccatta ttactctata tgatggcttt acaataatct tttcctcctt ttgcttgtct
     1021 cgagaaatcc tagaatctat caggtggttt tgtctactaa gtgaacgtag acatgcgtac
     1081 atagatcaat agccttatcg ctgtaattga aaaataaggt ggggttattg aactgccaaa
     1141 cattgagcac gaaccttaaa gactccttta tctccattat ctccctgcag ctttgcctta
     1201 gaaccatcac cacaacttcc agacagagta atctttacag tatctttgct atcgcaaatg
     1261 ttatcaaatg cttgtactcc tttgagatta tatttgtctg aagttatact ctctttagta
     1321 aagatgcctc ctttggaacc aagagttttg tgatcgacat tccattcggc aaaagttcca
     1381 tcattttggt aaaagacaaa aaagcttatt ctcgcattat tcactttact cccatcagaa
     1441 cagcttaagg tccctttgcc aactcctttt aattcgtaag ccttgctggc tgatatgttc
     1501 tggttataat aagcaggggt aacagctaat ccagcggcta ctaaaactat gattgctacc
     1561 tttattccat ttgattgttc cattggaatt ctgaatacga ttatgttttt taagtgctaa
     1621 gtaggagaat tctgaaatgt tttagttatg gtttttctat tgccagatac ctattattct
     1681 tctggataat catgatggtt tcttttgaat caattcttga ctaatgcgct ttggaaatct
     1741 cattttatta aacagggcta tcatgaatga atgacgttga ggtttgcggg atctaccttc
     1801 tgcttatcca tagtaggaca gcaaggccaa cagattgtgc cacatttatc acaaactagt
     1861 aaggagcagc ggcatctaca attcctttga tactaggccc agccacatac aattttgacc
     1921 aaaagattac tattactatg ttctgtatta tgaagagaga tgtaacgaat acaagtccgc
     1981 ctgtaaaata cgatcgtatc aagcgcatat tttgtacata cgttgcgacg attgccccta
     2041 gcaagcctat gttcgtcaaa gctgctgccc cagcacttaa catgtaatcc atttttatgg
     2101 agttacgcta attcattcct aatttacttt tacccaaatc accttgcacc ttggttgttt
     2161 gaactttcaa ttatcacatt tatggatcat ttttgaatga caagtaa
//
LOCUS       DATLQL010000406         1011 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2585032, whole genome shotgun sequence.
ACCESSION   DATLQL010000406 DATLQL010000000
VERSION     DATLQL010000406.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1011)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1011)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1011
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2585032"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..431
                     /locus_tag="VNB68_04255"
     CDS             <1..431
                     /locus_tag="VNB68_04255"
                     /inference="COORDINATES: protein motif:HMM:NF024587.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cytidylate kinase family protein"
                     /protein_id="HVD36595.1"
                     /translation="HVTEKDWWDTPEAIKFMEERKNDTSFDVAVDKMLLEIARKGRSV
                     ITSYTLPWLTRNPMTFWLSASQASRSERMASRDNISVQVALDVIKIRDEENKVIYKKI
                     YGSEFGKNFEVFDFVLNTELFTLKALIDICKEIVKRTRVV"
     gene            450..>1011
                     /locus_tag="VNB68_04260"
     CDS             450..>1011
                     /locus_tag="VNB68_04260"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-guided pseudouridylation complex
                     pseudouridine synthase subunit Cbf5"
                     /protein_id="HVD36596.1"
                     /translation="MSSNRLGELIRIADEVTNKKFGYPPYDRPIKELLNYGIILLDKP
                     GGPTSHEVVAWVKRILELEKAGHSGTLDPGATGLLPIGLGDATKALSVLLLGPKEYYA
                     IARLHSSDDHTNITNVLAEFVGEIYQRPPQRSSVKRSTRVRTIYELDLVEQKDNNLLL
                     RILCQAGTYVRKLIYDIGEVLGSGATM"
BASE COUNT          337 a          180 c          236 g          258 t
ORIGIN      
        1 accacgtaac agaaaaggac tggtgggata ctcctgaggc cataaaattc atggaggaaa
       61 gaaagaacga caccagtttt gatgtcgcgg tggacaagat gctcttggaa atagctagaa
      121 aaggtagatc ggtaattaca agctacactt tgccatggct gacacgcaat ccgatgacat
      181 tttggctaag tgcctcacaa gcaagcagat cagagagaat ggcaagtcgt gacaatattt
      241 ccgttcaagt agctttggat gtaattaaaa taagagatga ggaaaataag gtaatttaca
      301 agaaaattta tggctctgaa ttcggaaaaa attttgaagt atttgatttc gtactaaata
      361 cggaactttt cacgctaaag gcacttatag acatttgtaa agaaattgta aaaaggacga
      421 gagtggtata ataggaactt gcattaaaca tgtcatctaa cagacttggt gagctcatta
      481 gaatagccga tgaggtgaca aataaaaaat ttggataccc cccctacgac cgacctataa
      541 aagaattgct aaattatggt atcatattat tggataaacc aggaggtcct acgagccatg
      601 aggttgtcgc atgggtaaaa agaattctgg agttagaaaa agccggacat agcgggacat
      661 tggatcctgg cgcgaccggg ttgttgccaa tagggttagg cgatgccacg aaggcactta
      721 gtgtattact tttaggaccc aaagagtatt acgcaatagc gcgacttcat tcaagtgatg
      781 accacacaaa tattaccaat gttcttgccg aatttgtcgg ggagatttat caacgacccc
      841 cacagagatc ctctgtgaag aggtccactc gcgtcagaac tatttacgaa ttggatcttg
      901 tagagcaaaa agataataat ttactacttc gtatcctatg ccaagccgga acatatgttc
      961 ggaagttaat ttatgacatc ggggaagtgt tgggctctgg tgcaaccatg t
//
LOCUS       DATLQL010000407         1753 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_100006, whole genome shotgun sequence.
ACCESSION   DATLQL010000407 DATLQL010000000
VERSION     DATLQL010000407.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1753)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1753)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1753
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100006"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..462
                     /locus_tag="VNB68_04265"
     CDS             <1..462
                     /locus_tag="VNB68_04265"
                     /EC_number="1.5.1.5"
                     /EC_number="3.5.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019725.1"
                     /note="catalyzes the formation of
                     5,10-methenyltetrahydrofolate from
                     5,10-methylenetetrahydrofolate and subsequent formation of
                     10-formyltetrahydrofolate from
                     5,10-methenyltetrahydrofolate; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 5,10-methylene-tetrahydrofolate
                     dehydrogenase/5,10-methylene-tetrahydrofolate
                     cyclohydrolase"
                     /protein_id="HVD36597.1"
                     /translation="SFMKPCTPSGIIALLDYYRMDVAGMDAVIVNRSNLVGKPLAFLL
                     LEKNATVTICHSKTKGINQKLKAADIIITAVGDREHFCITSDMVKDYAIVIDVGIARY
                     NGKLAGDVDFTSVKEKASWITPVPGGVGPMTVCMLLKNTITSASIIRDMTR"
     gene            508..1110
                     /locus_tag="VNB68_04270"
     CDS             508..1110
                     /locus_tag="VNB68_04270"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR02727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030272 - 5-formyltetrahydrofolate
                     cyclo-ligase activity [Evidence IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HVD36598.1"
                     /translation="MIKLPRAHSKKSLLRISMLNKRNSLSKLEIFEKSRVIQEQVIHS
                     HQFKHADVVGAYFPIGSEVNTQQIIKVQLENDKTLALPRIDNDEIIFHKISGKYFQER
                     LLIEGRMGIKEPRSSCIPASDLDLVIVPAIAFDKNGSRLGYGRGYYDRFIAGKKNRIF
                     TIGLGFDFQLIEDEIPTSSSDEKINMIVTEQRVLDLSSGI"
     gene            complement(1087..>1753)
                     /locus_tag="VNB68_04275"
     CDS             complement(1087..>1753)
                     /locus_tag="VNB68_04275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004637 - phosphoribosylamine-glycine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0009113 - purine nucleobase biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="phosphoribosylglycinamide synthetase C
                     domain-containing protein"
                     /protein_id="HVD36599.1"
                     /translation="DYKKLYDNDKGENTGGMGSFSPTSLIDKKLHKKIMDRIMLPTIR
                     GMKRRGRSFKGFLYAGLMVDHNTLEPKVLEFNVRMGDPECQPIMMRMRSDLFGYLQAS
                     AQESLDTMEPIKWENQVSVCIVMASKGYPQKYKKSMVIRGLDNDFGRNVMIFHAGTAR
                     NRKNRIITNGGRVLGITALGPNMKIARDNAYSAVKKISWGKNQQHYRTDVGINSLNSG
                     RKI"
BASE COUNT          529 a          355 c          348 g          521 t
ORIGIN      
        1 agtttcatga aaccatgtac gccttcagga ataatcgctt tactagatta ctatcgaatg
       61 gacgtcgcag gtatggacgc tgtaatagtt aatcgtagta atcttgtggg taagcccctt
      121 gcctttctat tattggagaa aaatgctaca gtgactattt gtcattcaaa gactaaggga
      181 ataaatcaaa agttaaaggc tgcagacata ataattacgg cagtcgggga ccgcgagcat
      241 ttttgcatta cgtcggatat ggttaaggac tatgcaatcg ttatagacgt aggtatagct
      301 agatataatg gaaagctagc gggagacgtg gattttactt cggtaaaaga aaaggcgtcg
      361 tggatcacac ctgttcccgg cggagttggt ccaatgacag tctgtatgct gttaaagaat
      421 acaataacct ctgcatctat aatcagggat atgacacgtt agacacgatt atatcactga
      481 tttgtgaaat attgccgaaa ggagtttatg atcaagctgc cccgtgcaca ctccaagaaa
      541 agcttacttc gcatatcaat gctaaataaa cgcaattcct tatcgaagct tgaaatcttt
      601 gaaaagagca gagtcattca agagcaagtt attcattccc atcaattcaa acacgcggac
      661 gtagtaggcg catatttccc tattggctcg gaagttaata ctcaacaaat tattaaagtt
      721 caattggaaa atgacaaaac tctcgcgctg ccaaggatcg ataatgacga aataatcttc
      781 cataaaattt ctggtaagta ttttcaagag cgcttactca ttgagggaag gatgggaatt
      841 aaggaaccca gaagttcatg tataccagca agtgacctag accttgtaat tgtaccagcc
      901 atagcctttg acaaaaatgg atccagacta ggatatggac ggggatacta tgatagattc
      961 atcgcaggca agaagaatcg catttttaca ataggactgg gatttgattt ccaattaatc
     1021 gaagatgaga tccctacttc ctcttcagat gaaaaaatca atatgatagt aaccgagcaa
     1081 cgagtgttag atctttcgtc cggaatttaa tgaattaatc ccgacgtcag tcctgtaatg
     1141 ctgttgattc tttccccaag atattttttt aactgcagaa taggcattat ctctagcaat
     1201 cttcatgttt ggaccaagtg ccgtgattcc caataccctt cctccattgg tgatgattct
     1261 atttttcctg ttgcgtgctg ttccagcatg aaagatcatt acgttccttc caaaatcatt
     1321 atcaaggcct cgaataacca tggatttctt atatttctga ggatatccct tagaagccat
     1381 aacgatacag accgaaacct gattctccca ttttataggt tccatggtat caagactctc
     1441 ttgagctgaa gcttgcaagt acccaaaaag atcggacctc attctcatca ttatgggttg
     1501 gcattcagga tctcccattc tgacgttgaa ttcaagaact ttgggttcaa gtgtattatg
     1561 gtcgaccatt agacctgcgt aaagaaaccc tttaaaagaa cgacctctcc ttttcatacc
     1621 tcttattgta ggcaacatga tccgatccat aatcttcttg tgaagtttct tgtctatcaa
     1681 tgacgtaggg gaaaagctac ccattcctcc tgtgttttcg cctttgtcgt tatcatataa
     1741 cttcttgtag tcg
//
LOCUS       DATLQL010000408         1292 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_100347, whole genome shotgun sequence.
ACCESSION   DATLQL010000408 DATLQL010000000
VERSION     DATLQL010000408.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1292)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1292)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1292
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100347"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..446
                     /locus_tag="VNB68_04280"
     CDS             <1..446
                     /locus_tag="VNB68_04280"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HVD36600.1"
                     /translation="LPEQKLAIGVGIFSSMFAAGSVVGLALGANIIENFGWRTTFFSI
                     IFVAIGLWFIIKRYISDNHDPNITMSLPKMDIVIDSSLNKLEKRYGRSGIRAIDIKGT
                     ITLAVTITSFLLVLSYSESANVTGSPLVPIFLSIGAISLVLFVFI"
     gene            483..1130
                     /locus_tag="VNB68_04285"
     CDS             483..1130
                     /locus_tag="VNB68_04285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HVD36601.1"
                     /translation="MTNKMILSANIILVIAFLSMFTVFQTIPVLVRSPQPLGFGGSAI
                     TSADIQLPFMIVFLLFAPSSGFIVSKLGNVKPTLIGSIVSSIGFFSLFVFHSTEFLVA
                     TNLAIIAAGLSLMQVGGFDIVLQSTPRQFSGISLGMTVLFNLIGGSIGPAVAGIYMQT
                     HQVITKDIIGSFPSPESYSLIFLTIALTSLVPIVLAFFLRKKMTPLPDGLSVRKP"
BASE COUNT          367 a          244 c          241 g          440 t
ORIGIN      
        1 aacttccaga acagaagctt gccataggtg tagggatatt tagttcgatg tttgcagctg
       61 gttctgtcgt aggtttagct ctaggtgcaa atataattga gaattttgga tggcgtacta
      121 cgtttttttc aataatattt gttgctattg gcttgtggtt tataattaag cgatacattt
      181 ctgacaacca cgatcccaac atcacgatgt cattaccaaa aatggatatc gttattgatt
      241 cgtcccttaa taagttagaa aaacgttacg gaaggagtgg tattagagcc atagatataa
      301 aaggtacaat aactcttgct gttacgataa cttcatttct gctggtgctc tcgtattcag
      361 agtcggcaaa cgttacggga tctcctctag tcccgatatt tttatctatt ggagctattt
      421 cattagtact ttttgtgttc atataaagga gatcagaatc ccctctagtc aatttacaat
      481 taatgacaaa taagatgatt ctttctgcaa acatcattct agtaattgct tttctcagta
      541 tgtttacagt ctttcaaact atacctgttt tagtaaggag tccacaaccc ttaggatttg
      601 gaggaagcgc tataacaagt gcggatatcc aacttccatt catgattgta tttttgttat
      661 ttgcgccatc ttctggtttt atagtatcca agctaggcaa tgtaaaacca acccttattg
      721 gaagcatagt cagcagtatt ggatttttta gtctgtttgt gtttcactca acagaatttt
      781 tagtagcaac aaatcttgct ataatcgctg ctggattatc gctaatgcag gttggaggct
      841 ttgatattgt cctacaatct acaccgagac agtttagtgg aatatctctt ggaatgactg
      901 ttctttttaa tttgatcgga ggctcgatag gacctgctgt tgcaggtatt tatatgcaaa
      961 cacatcaagt cattacgaaa gacatcattg gttcatttcc ttcccctgaa tcctacagcc
     1021 tcatatttct tactatagct ttgacttctc tggtacctat agtacttgca tttttcttac
     1081 ggaaaaagat gacgccacta cctgatggtc tgtctgttag aaagccttaa tccgtttcgt
     1141 agtatggttc taatggtacg cgcaaccacg caactctcat acagcaaagg cagaaccagt
     1201 tgactataga acacaccaca gagagatgtt gcaacatctg aaatacatcg ttgaatgtaa
     1261 tattagatac atccgtttta ataaattagt ca
//
LOCUS       DATLQL010000409         1602 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1149380, whole genome shotgun sequence.
ACCESSION   DATLQL010000409 DATLQL010000000
VERSION     DATLQL010000409.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1602)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1602)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1602
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1149380"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            107..889
                     /locus_tag="VNB68_04290"
     CDS             107..889
                     /locus_tag="VNB68_04290"
                     /inference="COORDINATES: protein motif:HMM:NF022932.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HVD36602.1"
                     /translation="MESLGLTGYEIKVYLSLLELGSMTASDISKKSGVPYSKIYEVLN
                     TLEDKGWLESNSSRPQKFFPKSPLTALEAIRMRIESGIKDNESLIVSELMPVYEKSGV
                     RERPEIWVVRGVYNIAAKVSEIIQMCQQELLIALPQVAEDIAKPVQPMLRSLHEKGVK
                     IKVLASEETSPETVRALSRIADVRLKNNMFGGGVIGDSSQVIILLNEGRSDSQNFEPI
                     GIWADHIGLAGFAEDYFQYLWADASNRKKASSQPGSSRGINV"
BASE COUNT          505 a          283 c          322 g          492 t
ORIGIN      
        1 ctaagagagc ggtcgcttga tgtttgaaag taaggcatac ctatattaca gcgttagttc
       61 acttttgacg taaataatga acatcagcga caagtctagg aaagcaatgg aaagcctcgg
      121 cttgacaggt tatgagataa aggtctatct ttctcttcta gaattgggtt ctatgactgc
      181 ttctgacatt agcaagaaat ctggagttcc gtattctaag atttatgaag tcttaaacac
      241 cttagaagat aaaggctggc ttgaatctaa tagttcaaga cctcaaaaat tttttcctaa
      301 atcacctctt accgctctcg aggctatacg aatgcgtatc gaaagtggta tcaaggataa
      361 tgaaagcttg atagttagtg aattaatgcc tgtatatgaa aaaagtggtg ttagagaaag
      421 accagaaatc tgggtagtaa gaggtgttta caacatcgcc gccaaagtaa gtgagattat
      481 ccaaatgtgt caacaagaat tactgatagc cttacctcaa gttgctgaag atattgcaaa
      541 accggtacaa ccgatgttaa gatcattgca cgaaaaagga gttaaaataa aggttcttgc
      601 ttctgaggaa acgagcccag aaacggttcg tgcgctctca agaatcgctg atgttagact
      661 gaagaacaat atgtttggag gaggtgttat tggcgacagt agtcaggtca ttatattgct
      721 taatgaagga agaagtgata gtcaaaactt cgagccaatt ggaatctggg ctgatcatat
      781 aggactagca ggctttgctg aggattattt tcagtattta tgggcagatg caagtaacag
      841 aaaaaaagct agcagtcagc caggaagcag tagaggcatt aacgtttaaa atattgttta
      901 aaaatattgc tgacggtatt tataatcacg ctcgattttt atctagtatt gttttttgaa
      961 ttatctgaag taggaaaccc tgcacttatg agaaattctg tacaatccgt gtagaatttc
     1021 accgattatc acttgagagt ctaacgacaa aatctattcc tgcctgtata gaactgcatt
     1081 aattatacat tagaaatagg aaaaactgcg tttaaccgtt tacgaaggac tataattaaa
     1141 aatgaatata cctagtcgct agtgattttg gttatatatg gccttatatt ttctataaag
     1201 ccgctgcttt atgatattac aaaaattacc tatctcgcat ttatcgttta attcattcag
     1261 ccttactttt agacccaacg attcgagctc cgatagccag tactgtttct cttgttgaga
     1321 ggccatcacc atactagcaa gatggtttga cggaacttag ttaactactt aactaatagt
     1381 cgtcaggagg tttctatgaa ttccactctc cccctgttaa tggcgtatca atcgttatta
     1441 ctttccgctc gggtcttttg ctcagttcat aatgtctaaa gaaacaatgg agattttgca
     1501 tagttatcct agtgtgttgc gccttcaagt attcgctaat agaatttaga tatccttagc
     1561 ctcatagtcc aacagacagt cctccatcgt tagacttacc ta
//
LOCUS       DATLQL010000410         1063 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_100446, whole genome shotgun sequence.
ACCESSION   DATLQL010000410 DATLQL010000000
VERSION     DATLQL010000410.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1063)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1063)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1063
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100446"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..579
                     /locus_tag="VNB68_04295"
     CDS             <1..579
                     /locus_tag="VNB68_04295"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: protein motif:HMM:NF014593.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003864 - 3-methyl-2-oxobutanoate
                     hydroxymethyltransferase activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HVD36603.1"
                     /translation="YQTGMSNSVRNALKFLRYGCDGVKLEGGWEIVDIIKNLTGLGIP
                     VMGHIGLKPQTTPLHHGYGLQGKTAEDAVMLIREARALEEAGVFSIVLEKVTSEVSSV
                     ITQIVKVPIIGIGSGPHVDGQVLVIHDMLGLFKDMEPKFVKRYLNMADQIFDAIKQYE
                     NEVKSGKFPQEEHTYHMTEEEYAKLEKMLKRV"
     gene            582..>1063
                     /locus_tag="VNB68_04300"
     CDS             582..>1063
                     /locus_tag="VNB68_04300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavoprotein"
                     /protein_id="HVD36604.1"
                     /translation="MNTSNENSQNEKHVSKEIIGLESNALTGKKIVLCITASVAAYKA
                     IDLSRLLMRNGAEVYPVMSKSTESKLLTKEILDWATGNKTVTELTSALEHIVLANYGK
                     SDLILVYPCTANTLGKFVNGIEDNPVTTVLSVAFGSRIPIVIAPAMHEAMYENIIIAE
                     "
BASE COUNT          370 a          163 c          232 g          298 t
ORIGIN      
        1 tatcaaactg gtatgtctaa ttcagttaga aacgctctta aattcttgag atatggctgt
       61 gatggagtta agttagaagg tggatgggaa attgttgata ttatcaaaaa tttgacgggt
      121 cttggtattc ctgtaatggg acacattgga ttaaaacctc agactactcc tttacatcat
      181 ggatatggct tgcaagggaa aacggcggag gatgcagtta tgctgataag agaagctaga
      241 gctctagaag aagcgggtgt ttttagtatt gtccttgaaa aggttaccag tgaagtctca
      301 tcagttataa ctcaaattgt caaagtacca ataattggga tagggtctgg tcctcatgta
      361 gatggacaag ttttggttat tcatgatatg ttgggtttat tcaaagacat ggaacctaaa
      421 tttgtcaaaa gatacctaaa catggcagat caaatatttg acgcaataaa acaatacgag
      481 aatgaagtta aatccggcaa gttccctcaa gaagaacata catatcatat gacagaagaa
      541 gaatatgcaa aattagaaaa aatgctaaaa agggtttaga catgaatact tcaaatgaga
      601 attctcaaaa tgaaaaacat gtctcaaaag agattatagg cttggagagc aatgctttga
      661 cgggaaagaa aattgtgcta tgcattactg ccagtgtagc tgcatacaaa gcaatagatc
      721 ttagtagatt gctgatgcgt aatggtgctg aagtgtatcc ggtgatgtca aaatcaaccg
      781 aatctaagtt actaacgaaa gaaatattgg attgggctac tggaaacaaa accgtaacag
      841 aacttacatc agcattggaa cacattgtcc tcgctaatta tggcaagtca gatcttatcc
      901 ttgtatatcc atgcacggcc aacactttgg gaaaatttgt caacggaata gaggataatc
      961 ctgtaactac tgttttaagt gtagctttcg gatcaagaat accgattgta attgctccgg
     1021 caatgcatga ggctatgtat gagaatatca ttatcgcaga aaa
//
LOCUS       DATLQL010000411         1187 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_634378, whole genome shotgun sequence.
ACCESSION   DATLQL010000411 DATLQL010000000
VERSION     DATLQL010000411.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1187)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1187)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1187
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_634378"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..544
                     /locus_tag="VNB68_04305"
     CDS             <1..544
                     /locus_tag="VNB68_04305"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HVD36605.1"
                     /translation="STRKRIPMFFGAVNSGMINLATKIADGVILYLHPLHRLTDTVRG
                     INSNIGKYKKPFEICSVFITAISEQYPEIARQRAAKTLAFYTAVGKYYSKFLAENGFQ
                     SEVSAITEEYKKNGIDQASNCVSEKMLRSLAIYGDKEDCVRSLRQFMATGITLPILQV
                     NPVGNPEDSINESLLLSNLV"
     gene            537..>1187
                     /locus_tag="VNB68_04310"
     CDS             537..>1187
                     /locus_tag="VNB68_04310"
                     /inference="COORDINATES: protein motif:HMM:NF012336.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiolase family protein"
                     /protein_id="HVD36606.1"
                     /translation="MSDVAVVSHKSGKFRKKSSLPLMELACEPCIEILQEFPQFRDKI
                     DCVLFSTTSPLQYSSAILSEYLGITPKISQRIDNLCNSGTHAIISAYSLIKSGLCEMA
                     LVVGADTSETEGKKLKWDVTRGEFAFPVHWAALFAKSHMRKNGTTEDQMSMVSVKNRG
                     NAISNPKALFTTKITLEEVLESQKIAEPVKLLECSYVCDGASAVIMTNKKNAKKINC"
BASE COUNT          396 a          228 c          246 g          317 t
ORIGIN      
        1 atcaaccaga aagagaatac ctatgttttt tggcgcagta aacagtggga tgatcaatct
       61 agccacgaaa attgcagacg gtgttatact atacttgcat ccattgcaca ggctaacaga
      121 tactgtccga ggcatcaatt ccaatattgg aaagtataag aagcctttcg aaatatgttc
      181 tgtctttatc actgcaatat cagaacaata tcccgagatt gctaggcagc gagcggcaaa
      241 gacccttgca ttttatactg ccgtaggaaa atattacagc aaatttctgg cagaaaacgg
      301 attccaaagc gaagtgagtg caataactga agagtacaag aaaaatggta ttgaccaagc
      361 gtcaaattgt gtatcggaaa aaatgttaag atcacttgca atttatggtg ataaagaaga
      421 ttgcgtaagg tctctacgac aattcatggc tacgggcatt actctaccaa tactgcaagt
      481 caatcctgtg ggaaatccag aagattcgat caacgaatcc ctattgttat ccaaccttgt
      541 ctgatgtagc agtagtctct cataaaagtg gaaaatttag gaaaaagtca tcacttccat
      601 tgatggagtt ggcatgtgaa ccatgcatag aaatcttgca ggaatttcct caattcaggg
      661 acaaaataga ttgtgtactt ttttcaacta cctctccgtt acagtatagt tctgctatcc
      721 tgtctgaata tcttggtata acgccaaaaa tatcgcagag aattgataat ctttgcaatt
      781 caggaactca tgctataatc tcggcttatt cactcatcaa atcaggatta tgtgaaatgg
      841 ctctcgtggt gggagccgac actagcgaga ctgagggtaa gaaattgaaa tgggatgtta
      901 cgagaggaga atttgcattt ccagtccact gggcggcgct ttttgctaag tcacacatgc
      961 gcaaaaatgg tacaaccgaa gaccagatgt ctatggtttc ggtgaaaaat cggggtaacg
     1021 caatcagcaa tcctaaagca ctttttacca caaaaattac gctagaagaa gtcctagaat
     1081 ctcagaaaat tgctgaacct gtcaaattac tcgaatgttc ttacgtctgt gacggagcgt
     1141 ctgcggtaat aatgacaaac aagaaaaacg caaaaaaaat caattgt
//
LOCUS       DATLQL010000412         1775 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2232414, whole genome shotgun sequence.
ACCESSION   DATLQL010000412 DATLQL010000000
VERSION     DATLQL010000412.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1775)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1775)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1775
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2232414"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..512)
                     /gene="endA"
                     /locus_tag="VNB68_04315"
     CDS             complement(<1..512)
                     /gene="endA"
                     /locus_tag="VNB68_04315"
                     /EC_number="4.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000214 - tRNA-intron endonuclease
                     complex [Evidence IEA];
                     GO_function: GO:0000213 - tRNA-intron endonuclease
                     activity [Evidence IEA];
                     GO_process: GO:0006388 - tRNA splicing, via
                     endonucleolytic cleavage and ligation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-intron lyase"
                     /protein_id="HVD36607.1"
                     /translation="MPHNPGLEHVMAQICGTLVENRILISDLENSRAIFSLGYFGKPL
                     GISKPKDNTFESPLILDVIEGCYLVDSSMLEVSHVSGKKVSLKEMKSVCRKQYADFDT
                     KYLVFKRLRDMGYVVSPGIKFGCDFAVYEHGPGIDHAPYLVQVVKPSDNLTTTGIVLA
                     GRLATTVKKQ"
     gene            complement(482..1135)
                     /locus_tag="VNB68_04320"
     CDS             complement(482..1135)
                     /locus_tag="VNB68_04320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF47 family protein"
                     /protein_id="HVD36608.1"
                     /translation="MYSGELEVQAKRKALAVLHDEINNILNAARDLSLLTDSIIKGGD
                     KDMEISLLRMRNAEEKVENLRRKMTREVSEIGSLMVYREDVLRTAYIIDDIAGYISGI
                     AFRLYSMKISSLKKGKFDIDLKELVSMVVEAIFKLNEMARALSINPASTIELAQEVQR
                     LERKVDESYRKVIIKALNEIPDIKDLLLLKDVVEGIEGMADKCQGASDCLTILALSM"
     gene            complement(1359..1574)
                     /locus_tag="VNB68_04325"
     CDS             complement(1359..1574)
                     /locus_tag="VNB68_04325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36609.1"
                     /translation="MSRGLAIFSFWFLGFGIGFIGYLSLPGIADWFSIVLPKFVNQAI
                     IGALIAGMVGSAVSTFTVVTWANRATA"
BASE COUNT          519 a          399 c          303 g          554 t
ORIGIN      
        1 aattgttttt ttactgtagt tgcaagtctt cccgctagta ctattcctgt ggttgtcaaa
       61 ttgtcagaag gcttgacaac ttggaccaga tatggtgcgt gatcgatacc aggaccgtgt
      121 tcgtatactg caaagtcaca accaaatttt attcccggag aaacgacata tcccatatct
      181 cgaagccttt tgaaaacgag atactttgta tcaaaatcag cgtactgttt tctacatacg
      241 gatttcatct ctttcaagga gaccttcttg ccggatacat gagatacctc aagcatactc
      301 gaatcaacca aatagcaccc ctctattaca tcaagaatca atggtgattc gaacgtgttg
      361 tccttaggtt ttgaaattcc caatggtttg ccaaaatagc ccagggaaaa aattgctcta
      421 gaattttcaa gatcactaat tagtattctg ttttctacaa gagttccaca tatctgagcc
      481 atcacatgct caaggccagg attgtgaggc aatcagacgc accttgacat ttatcagcca
      541 tcccttcaat tccctctact acgtccttta ataagagaag atctttaata tctggaattt
      601 cattaagtgc tttaataatc accttcctat atgattcatc aaccttacgt tctaatcttt
      661 gaacttcctg tgcaagctca atggtacttg ctggatttat gctcaatgca cgcgccattt
      721 cgttaagctt aaaaattgct tccacgacca tacttaccaa ttccttcaga tcgatatcga
      781 atttaccctt cttaagtgaa gagattttca tgctataaag cctgaatgct attccgctaa
      841 tgtaacctgc tatatcatca ataatatagg ctgttctaag aacgtcttct ctgtaaacca
      901 taaggcttcc tatctctgag acttctcgtg tcatctttct tcggaggttc tctaccttct
      961 cctctgcatt gcgcatcctc aacagagaaa tttccatgtc tttgtcaccg cctttgatta
     1021 ttgagtcagt aagtaaggaa agatctctag ccgcgtttag aatattgttg atttcatcat
     1081 gcagaacggc caatgctttt ctctttgcct gaacctcgag ttcgccactg tacattcgaa
     1141 agataaaatg tccagacggg ctattaattc ttttgacaga attccaggtg caccactcaa
     1201 tcttgtttgt agacgcaaaa catgatggaa taacaaatac aatatccgtg gatcaattac
     1261 caaaaataga actccgtgga ccttacccca ttagttcaag tattttcctc tacccgttat
     1321 actaaggcgt attcaataaa tcatgtgaat tatactgctc aagcggtggc tctgttggcc
     1381 catgtgacca ctgtaaacgt actcacagca gagcctacca ttccagctat tagtgcgcct
     1441 attatggcct ggtttacaaa ttttggcaga actatagaaa accaatctgc gatgcctggt
     1501 aaggagaggt accctatgaa tccaattcca aaaccaagaa accaaaatga aaagatcgca
     1561 agtcctctag acatgctaga ctaaccctcg accaaccgtt atttcaggag aatcgattat
     1621 acgcttatac atatttgggt gtctaatcat cccgttttaa acaagaatgt caaaaattgt
     1681 atattttaag gtatgatggt ttgacatgtc taaagatgtt cggacttgtt aggctttttt
     1741 ttcaaggcat cgaaacgtaa tctcaatgat caata
//
LOCUS       DATLQL010000413         1533 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2233101, whole genome shotgun sequence.
ACCESSION   DATLQL010000413 DATLQL010000000
VERSION     DATLQL010000413.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1533)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1533)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1533
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2233101"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..371)
                     /locus_tag="VNB68_04330"
     CDS             complement(<1..371)
                     /locus_tag="VNB68_04330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36610.1"
                     /translation="MEQILLYVTMSFAILGLGFLTGVPTYGKEDESLNAQVTVPNDSE
                     ISLSPLYHSIIGKVTSIKILNVTGFPRTEVSFTENGTMVGIGYVTNIGTFLETNKSDK
                     TKSGQGKGIMTTADGDLVMWTS"
     gene            complement(587..862)
                     /locus_tag="VNB68_04335"
     CDS             complement(587..862)
                     /locus_tag="VNB68_04335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36611.1"
                     /translation="MKKSTKLVALGAALILSGILVTTLSLSSQVSAQGSTVDVEKLKQ
                     ILNETRMAIEANDDPGALTQLDLAEGMLSGGSNMTAESNMTEAIVTG"
     gene            949..1452
                     /locus_tag="VNB68_04340"
     CDS             949..1452
                     /locus_tag="VNB68_04340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36612.1"
                     /translation="MDTNSKMGSITKAVTICLIAVGLVAGSSLMYSAIGGVYARQPFV
                     GGAIVIGTSENQKVSCSSASSKNTHGLQFSANTRDGILQGYWDIASPFTGAENKGGYI
                     YDGSSTGKTYELKGKETHDGICHAKVPKDIIISGNCGKGVAINYKTINGLSHTFTGNV
                     KCLGHTT"
BASE COUNT          469 a          308 c          290 g          466 t
ORIGIN      
        1 gatgtccaca taacaaggtc accatctgca gtagtcatta ttccctttcc ttggccagat
       61 ttggttttat cagatttgtt cgtttccaga aatgttccga tattagttac gtagcctata
      121 cccaccatgg taccattctc ggtaaaagat acttctgttc tgggaaatcc cgttacgtta
      181 agaattttaa tactcgttac ttttccaatg attgagtgat acaatggact tagtgatatc
      241 tcagaatcat taggaactgt gacctgtgca tttagagact catcctcttt gccatatgtt
      301 gggacacctg taagaaagcc caaaccaaga atagcaaaac tcattgttac atacaataaa
      361 atttgttcca tgtcccgtat ggtatacttg acttggctaa taaattattt cgtgggcctc
      421 gaagtgatga agtctggatc aaccatgaaa ttgctgtcaa ttgtcatact gtgcttgcac
      481 gctatggcaa ggtagttgtc caattctgtg atgatataac taataaaaat tgaccgggat
      541 ttataatctc ataaaaaagt aagtatttga aacaatagat tggaagtcag ccagtaacta
      601 ttgcttcagt catattactt tcggctgtca tattgctacc accgcttaac attccctcag
      661 ccagatctag ttgagtcaat gctccagggt catcgttagc ctctatagcc atacgagtct
      721 cattcaaaat ttgctttaat ttctcgacat ctactgttga tccctgagca gatacttgac
      781 tactcagact tagggttgtc acgagaattc ctgagagaat taatgctgca cctaacgcta
      841 ccaatttagt actttttttc attgcaacat tctccagaat aatttattta agtatttcct
      901 atcccggtta caatctttat atatttccat ataaaagaac aatttacaat ggatactaac
      961 tcaaaaatgg gatctatcac aaaggctgtt acgatctgct taattgcagt agggttggtg
     1021 gctggctcaa gcctcatgta tagtgcaatc gggggggtat atgcgagaca gccattcgtt
     1081 ggaggagcaa tagtcatagg tacaagtgag aaccaaaaag tatcatgttc cagtgcgtca
     1141 tccaaaaaca cacatggtct tcagttctct gccaatacaa gggatggaat tctacagggc
     1201 tattgggaca ttgcatctcc gttcaccggt gcagaaaata aaggcggata catatatgat
     1261 ggaagcagta ccggaaaaac ttatgaattg aagggaaagg aaacacatga cggcatatgt
     1321 cacgctaaag tacccaaaga tataatcata agcggaaact gcggcaaggg agttgcgata
     1381 aactacaaga caattaacgg actgagccat acctttacag gtaacgtgaa gtgtttagga
     1441 cacactactt agtattagca atacctactc aactttccta tttttttgtt tttcacattc
     1501 atctaatctt aaaggtcttc ctatcgaaca att
//
LOCUS       DATLQL010000414         1677 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_636022, whole genome shotgun sequence.
ACCESSION   DATLQL010000414 DATLQL010000000
VERSION     DATLQL010000414.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1677)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1677)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1677
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_636022"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..879)
                     /locus_tag="VNB68_04345"
     CDS             complement(<1..879)
                     /locus_tag="VNB68_04345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitase family protein"
                     /protein_id="HVD36613.1"
                     /translation="MQKTLFDKIWDSHVVIDNSQDEHAGDTTGPSLVYIDRHLIHEVT
                     SPQAFAGLKQSGRKVRHPGLTIATTDHNVSTGNRSLPVVDEVSKMQLETLGRNCKEFG
                     ITIYDMTSPDQGIVHVIGPELGFTLPGTTIVCGDSHTSTHGAFGALAFGIGTSEVEHV
                     LATQCIWMYKPKSFLINVKGNPIKSHTITPKDIILKIIHEIGTDGGSGTVIEYKGQAI
                     SALSMEQRMTICNMSIEGGARAGLIAPDEITFNYLRGRRYAPKESELNKMIEYWKSNL
                     RSDSNVKFDRVETINVD"
     gene            1002..1670
                     /locus_tag="VNB68_04350"
     CDS             1002..1670
                     /locus_tag="VNB68_04350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proteasome subunit beta"
                     /protein_id="HVD36614.1"
                     /translation="MFQQDNKNSEEYVMNHIKKGTTTCALTCKDGVVLAADTRASAGF
                     FIVDRNVMKIQKIDEHLGMTIAGGVADAQNLVDLLRYNANLYKLSNNQKLIPVKSAAR
                     LCSNVLFNQRYYPYYVQIIMAGFDKNSEGAQIYNIDLFGSMTTERFISTGSGSPVAYG
                     YLESEYKKDLSVNEAYKTAIQAIAAAIRRNSGTGDNINAVIIDKDGYRELSKEVKDAV
                     QAVY"
BASE COUNT          526 a          313 c          312 g          526 t
ORIGIN      
        1 atcaacatta attgtttcaa ctctatcaaa ttttacgttt gaatcacttc tcaaattgct
       61 tttccaatat tctatcattt tattcagttc tgattcttta ggagcatacc ttcttcctct
      121 caaataattg aaagtaattt cgtcaggagc aattaatcct gctcttgctc cgccctcaat
      181 agacatattg caaatagtca ttcgctgctc cattgatagt gcagaaattg cctgtccttt
      241 gtattcgata acagttccag aacctccatc ggtacctatt tcgtgaataa tcttgagtat
      301 tatgtcctta ggagtgatag tatgagattt tattggatta cctttaacat tgattaagaa
      361 tgattttggt ttgtacatcc atatacactg tgtagcgaga acatgttcaa cctcgctagt
      421 tcctattcca aaagcaagag caccaaatgc accatgtgtt gatgtatgac tgtcaccgca
      481 aactatggtc gtaccaggca atgtgaaacc aagttctggt ccaattacat gaactatgcc
      541 ctgatcaggg ctagtcatat catagatagt tatcccaaat tccttgcaat ttctgcctag
      601 tgtttcaagt tgcattttgg atacctcatc aacaacagga agtgatctgt ttccagttga
      661 aacgttatgg tctgttgttg caattgttaa accagggtgt ctaacttttc taccgctctg
      721 ctttagacca gcaaaagctt gtggagatgt aacttcatgt attaagtgcc tatcaatgta
      781 tactaatgac ggtccagtgg tatcgccagc atgttcatcc tgactattat ctatgactac
      841 gtgactatcc caaatcttgt caaatagggt tttttgcatt attatgttat cgttagttaa
      901 atcggaatat aatcatatta ctatcaaact atattttgac gtaaaacagt agtatgggaa
      961 gtgacaatgc ttaaatctag tattgataga aattaactcc aatgtttcag caagacaata
     1021 agaattctga agaatacgtc atgaatcata taaagaaagg aacgactacc tgtgctttga
     1081 catgcaaaga cggagttgtt ctagctgcag atacaagagc tagcgctggt ttctttattg
     1141 tagatagaaa tgttatgaaa atccaaaaga tagacgaaca tttaggcatg acaattgcgg
     1201 ggggtgtcgc tgatgctcaa aatctggtcg atcttttgag gtataatgca aatctgtaca
     1261 aattatcaaa caaccaaaaa ttgattcctg ttaaatctgc agcaaggctg tgttctaatg
     1321 ttctcttcaa ccagagatac tatccttatt acgtacaaat aatcatggca ggatttgaca
     1381 agaatagtga gggtgcacaa atttacaaca tcgacttatt cggttccatg accactgaaa
     1441 ggtttatttc aacaggcagc ggctctccgg ttgcatatgg atacttggag tcagaataca
     1501 aaaaagacct tagtgtaaat gaagcgtaca aaacagcaat acaagcaata gctgcagcta
     1561 ttagaagaaa ttctggaacc ggtgataaca tcaatgctgt cattatagac aaggatggat
     1621 atcgagaatt atctaaggaa gtaaaagatg cagtacaggc tgtttattga caagccc
//
LOCUS       DATLQL010000415         1179 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1346351, whole genome shotgun sequence.
ACCESSION   DATLQL010000415 DATLQL010000000
VERSION     DATLQL010000415.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1179)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1179)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1179
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1346351"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1061)
                     /locus_tag="VNB68_04355"
     CDS             complement(<1..1061)
                     /locus_tag="VNB68_04355"
                     /inference="COORDINATES: protein motif:HMM:NF012670.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016624 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, disulfide as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HVD36615.1"
                     /translation="MALKMRYLELNRKIRDVRMLAIQGIAEAGSGHPGASFSAAEIMG
                     VLYFHKMKNRPTDPFWEERDYFINSKAHSAPGFYAVLATAGYIDTKEIKTLRKLGSRL
                     QGHPVRYSERQKDHSFPGIEYSGGSEGIGLSVSIGIALAKKRDGQKNRVYTLIGDGES
                     NEGQIWEAAMAASKFKLDNLVAILDRNKIQQDGFTEEIMPLDPVRDKWAAFNWNVVEV
                     NGHKIEQIIDALGRIEKVEDKPSIIIANTTKGRGIKHMANNPQWHGKAPPKKHVPILL
                     EELQSEILIAPSIIAGEPENYEEKVRRAERAGADFIHLDIMDGKFVPSTSFFADTIKH
                     LRKISSIPFDAHLMIEKPV"
BASE COUNT          309 a          261 c          203 g          406 t
ORIGIN      
        1 ttaacaggtt tttcaatcat caaatgagca tcaaaaggga tgctagagat ttttctcaga
       61 tgtttgatag tatctgcaaa aaatgaggta ctaggaacaa attttccatc cattatatcc
      121 aagtgaataa aatctgctcc tgcccgttct gctctcctta ctttttcttc ataattctca
      181 ggctcccctg caataattga aggggctatc aaaatctcac tttgaagctc ttcgagtaaa
      241 attgggacat gtttttttgg aggagcctta ccgtgccatt gtggattatt agccatatgc
      301 ttgattcccc taccctttgt ggtatttgcg attattattg atggcttgtc ttctaccttt
      361 tcgattctgc ccaaagcgtc gattatctgt tctatcttgt gtccattaac ctccacgaca
      421 ttccaattaa acgctgccca tttgtctcta acaggatcca gaggcattat ttcttcagta
      481 aaaccatcct gctggatctt gttcctatct aggatagcta ctagattatc gagtttaaat
      541 tttgacgctg ccattgctgc ttcccagatt tggccctcat ttgattcacc atcaccgatt
      601 aaagtataaa ctctattctt ctgaccatct cgcttttttg caagtgcaat tccgattgat
      661 actgataaac cgattccttc agatccgcct gaatattcta tgccggggaa gctatgatct
      721 ttttgtcgct ccgaatatct aactggatga ccttgtaggc gagaaccaag ctttctcagc
      781 gtctttatct cctttgtatc aatatagcca gcagtcgcta aaactgcata aaatccggga
      841 gcggaatggg cttttgaatt aatgaaatag tctctttctt cccagaatgg atccgttggt
      901 cgatttttca ttttgtgaaa atatagaact cccataattt ctgctgctga aaatgatgct
      961 ccgggatgtc cagaaccagc ttcagcgatc ccttgaatcg ccaacattct tacatctctt
     1021 attttcctgt tgagctcaag atatctcatt tttaaagcca tttagatacc ccaaatagaa
     1081 cccaaggaca ccatcattgg atgtatattg taatagaatt gtgcgataaa aacatatgta
     1141 atattgattc tgagttttcc aattttgttc tcatggctt
//
LOCUS       DATLQL010000416         1632 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_103017, whole genome shotgun sequence.
ACCESSION   DATLQL010000416 DATLQL010000000
VERSION     DATLQL010000416.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1632)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1632)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1632
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_103017"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(62..1033)
                     /locus_tag="VNB68_04360"
     CDS             complement(62..1033)
                     /locus_tag="VNB68_04360"
                     /inference="COORDINATES: protein motif:HMM:NF012361.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HVD36616.1"
                     /translation="MELQGKFNAKSIENEIRCYLNAIDLKEYLEKEFLFNGNNLLGYI
                     DGPPTLNGEPHVGHLRGRIIKDMWYRLNTIQKKKVIFRAGWDTQGLPVELQAERELGL
                     VGNKTENINKVGIEKIVEACKRIIKIYNEKWVSTDKLLAMSFNYEEAYWTYRDEYIER
                     EWQYLRKAWENGILKEWFRVVAYCPSCQTSLSNAEVNQGYENVDDPSFYYKVKLSDEN
                     AFLIVWTTMPFTIVTDEMVAVNPDANYVYVSVDNEKWIIGENRLLELMKELRVGKYEV
                     DRTLQGKDLDGRHYIHPLLHLISGLNDLAKAGVIHLVVAEQFVDNTP"
     gene            1149..>1632
                     /gene="ppa"
                     /locus_tag="VNB68_04365"
     CDS             1149..>1632
                     /gene="ppa"
                     /locus_tag="VNB68_04365"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004427 - inorganic diphosphate
                     phosphatase activity [Evidence IEA];
                     GO_process: GO:0006796 - phosphate-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HVD36617.1"
                     /translation="MKPGRDPPDEVNVVIEIPKGSSIKYEIDAESGAVFVDRKLFTSM
                     VYPYNYGFIPQTKEGDGDPVDVLVLGNDPVIPLSVIRARPIGVLLTEDEEVQDSKIIA
                     VPLARIDPSYSAITDTHSIPEYTQSQIEHFFEHYKELEKGKFVKVLGWEGKEVAKRKI
                     S"
BASE COUNT          482 a          345 c          281 g          524 t
ORIGIN      
        1 ttttctctgc gatttcgaaa tcttcctgta catttgcagg cgataaatgc acgattccgc
       61 ttcaaggtgt attgtctaca aattgctctg ctacaaccaa gtgaatgaca ccagccttcg
      121 ccagatcatt taatccagaa atcagatgca gcaatggatg aatgtagtgc ctcccatcta
      181 ggtcttttcc ttgaagagtt cggtcaactt cgtatttccc aacccgaagc tccttcatta
      241 actcaagcaa gcgattctca ccaatgatcc atttttcatt atctacactt acataaacat
      301 agttcgcatc tggattgaca gcgaccattt catctgtaac aatcgtgaat ggcattgtag
      361 tccatactat caaaaaagca ttctcgtcag agagcttgac tttatagtaa aaagaaggat
      421 catcaacatt ttcatatcct tgattaactt cagcattgct aagtgaggtc tggcacgatg
      481 gacaataagc aaccactcta aaccattcct ttagaatgcc gttttcccaa gccttcctta
      541 aatattgcca ttctctttcg atatactcat cgcgataagt ccagtatgct tcttcgtaat
      601 tgaatgacat ggcaagcaat ttatctgtac ttacccactt ctcgttgtaa attttgataa
      661 ttctcttaca cgcttcgaca attttttcta taccaacttt attgatgttc tctgttttat
      721 tacccaccag ccctaattct ctttcagcct gtagctctac aggtagacct tgtgtatccc
      781 aaccagctct gaagatcact ttctttttct gaatagtgtt tagcctgtac cacatatcct
      841 ttattattcg tcctcttaaa tgtccaacat gtggttcgcc attcaatgta ggaggaccgt
      901 caatataacc taacaaatta ttaccattaa ataggaattc tttttccaaa tactctttca
      961 aatctatagc attcagataa caacgaattt cgttctcgat agatttggca ttaaatttcc
     1021 cttgaagttc cattaatacg atgccaatcc atagccctgt gtttatgttt ttggttataa
     1081 tgcccaataa gattatatct tattgcaaat tctggtactc tgatagaaag atggtactca
     1141 cacgtttatt gaagccagga agagaccctc cagatgaagt taatgttgtt atagaaattc
     1201 ctaaaggcag tagcataaaa tatgaaatag atgctgaaag tggggctgtt tttgtagatc
     1261 ggaaattgtt tacttcaatg gtatatcctt ataattacgg atttatcccg cagaccaaag
     1321 agggcgatgg agatcccgta gatgtactcg ttctaggaaa tgatcctgtt attcctctgt
     1381 cagtaatccg ggctcgacca attggtgttt tacttaccga agatgaggaa gtccaagatt
     1441 ctaaaattat tgcggtacct cttgcgagaa tcgatccaag ctattcagca attacagata
     1501 ctcatagtat tccagaatat acacagtcac agatcgagca tttttttgaa cactataagg
     1561 aattggaaaa gggaaaattc gtaaaagtgt taggatggga aggaaaagaa gtcgcgaagc
     1621 gcaagatttc cg
//
LOCUS       DATLQL010000417         1072 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_817059, whole genome shotgun sequence.
ACCESSION   DATLQL010000417 DATLQL010000000
VERSION     DATLQL010000417.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1072)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1072)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1072
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_817059"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(621..>1072)
                     /locus_tag="VNB68_04370"
     CDS             complement(621..>1072)
                     /locus_tag="VNB68_04370"
                     /inference="COORDINATES: protein motif:HMM:NF021385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="2OG-Fe(II) oxygenase"
                     /protein_id="HVD36618.1"
                     /translation="VPVANTWMKMLNMERQFPDTFDELQTLCHDNNQTKPTVLILKYG
                     KGGHNTLHQDLYGDIFFPLQLIFFLNEPDDDYTGGEFVLTQQTPRAQSKAIVLRPQKG
                     DMLIITTNFRPIKGSKGYYRAQMRHGVSEVHDGERHTLGIIFHDALS"
BASE COUNT          303 a          209 c          196 g          364 t
ORIGIN      
        1 gtaggtgaat ggtggatata tgcttactaa gatctgtatt actttgctta aactcacatt
       61 ggatagtgac ataagccgat gcaggaaaac aaagtcctac attccaaatc ttgaattctg
      121 gatttttgtt taggacatct aaagaaatgt ctgatcaaca aaacaccatc tccaatcttc
      181 attaggttca aaggattgga caatcgggtg ttttgttgaa tggaaatgtt tagtcgcatg
      241 tttattcttt gacgagtcgc aacatcctac atggccacaa attagacaaa gacgcaaatg
      301 cacccaagaa tcgccaattt taagacaatc ctcgcaacca tctgcactag gctttacgtg
      361 ttcttgaatt aatttaagat gtttacatcc tgaatttgac atcatgctat tttatgagta
      421 ggtctctaat aagcctagca tcttaaggat taatatcttt acattaaaca ttagatgtgt
      481 atgttgtatt tgaagagtat aatcctccct tgcctcgtaa tttcttatag tctaggtaat
      541 gttgtctatc taaggctcat tttggctcat gtgtttcctc agctctatat cacttatctc
      601 attatggggg agtcatgcag ttagcttagg gcatcatgaa aaataattcc aagggtatgc
      661 cgttctccat cgtgtacctc acttacaccg tgcctcattt gtgccctgta atatccttta
      721 ctccccttta taggcctgaa atttgtagtg attatcaaca tatctccttt ttgcggtctt
      781 aagacaatgg cctttgattg tgcccttggc gtttgctgtg ttaatacaaa ctctccacca
      841 gtatagtcat catccggttc attcaggaag aaaatcaatt gaagaggaaa aaaaatgtct
      901 ccatataaat cctggtgcaa tgtattgtgc cctcccttac cgtattttag aataaggacg
      961 gtgggctttg tttgattatt gtcatggcaa agcgtttgaa gttcatcaaa ggtatctgga
     1021 aattgtcttt ccatgtttaa cattttcatc catgtatttg caacaggcac aa
//
LOCUS       DATLQL010000418         1163 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_103699, whole genome shotgun sequence.
ACCESSION   DATLQL010000418 DATLQL010000000
VERSION     DATLQL010000418.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1163)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1163)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1163
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_103699"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..293
                     /locus_tag="VNB68_04375"
     CDS             <1..293
                     /locus_tag="VNB68_04375"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: protein motif:HMM:NF012441.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004590 - orotidine-5'-phosphate
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="orotidine 5'-phosphate decarboxylase / HUMPS
                     family protein"
                     /protein_id="HVD36619.1"
                     /translation="NQRTGRIISMYKMFLAMAMDAKVDGIVVGANQSDILREISHVRR
                     IPIFSPGIGIQGGSIDRAIKNGTDYFIVGRSIIASANPVKEARKFQRLAVPY"
     gene            complement(413..841)
                     /locus_tag="VNB68_04380"
     CDS             complement(413..841)
                     /locus_tag="VNB68_04380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HVD36620.1"
                     /translation="MLLERSAGAVVFSIKYSGNVFFLLLRYSAGHWDFPKGNIEDGED
                     EVQAACREIREETGIENVVFLEGFNKKVEYNYRRHRNVIHKEVVFFLAKTDSQRVIIS
                     NEHIAYSWTDFDSALAKLTYMTAKDILVKAQDYLKSRFIK"
     gene            complement(1007..>1163)
                     /locus_tag="VNB68_04385"
     CDS             complement(1007..>1163)
                     /locus_tag="VNB68_04385"
                     /inference="COORDINATES: protein motif:HMM:NF013424.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="undecaprenyl diphosphate synthase family
                     protein"
                     /protein_id="HVD36621.1"
                     /translation="TSGEKRLSGFLIWQSAYSELVFMDVFWPEFRKIDLMRAIRTYQS
                     RLRRYGK"
BASE COUNT          350 a          250 c          203 g          360 t
ORIGIN      
        1 tcaatcaacg aacaggtcga atcataagca tgtataagat gtttcttgct atggcaatgg
       61 atgcgaaggt agacggaata gttgttggtg ctaatcaatc agatattctg agagagattt
      121 ctcatgtcag gagaatccct attttttcac ccggtatagg gatacaaggg ggaagcatag
      181 atagagccat caaaaatggt actgactatt ttatagtcgg tcgttccatc attgcttcag
      241 ctaatcctgt aaaagaggct agaaaatttc aacgattagc cgtgccatac taattctaac
      301 ttcaaaattt gaatttagct taatcaaaga tagatggaaa ccgagaataa gccgaaaata
      361 gcgtctaatt attcttcgga taataccaaa cttcgagaca tcagagttgg gatcacttga
      421 taaacctaga cttcaaataa tcttgtgcct tgaccaagat atctttggca gtcatatagg
      481 ttaatttggc aagagcactg tcaaagtcgg tccatgaata ggcgatatgt tcatttgata
      541 taatcaccct ctgggaatct gtctttgcaa ggaaaaatac aacttccttg tgtatcacgt
      601 ttcggtgtcg cctgtaattg tattccactt tcttgttgaa tccctccaaa aaaacgacat
      661 tttctatgcc cgtttcttct cgtatctctc ggcatgcggc ttggacctca tcctccccat
      721 cttctatatt acccttgggg aaatcccaat ggccagcact ataacgcaaa agcaaaaaaa
      781 atacattccc agaatatttt atcgagaata ctactgctcc tgctgacctt tccaataaca
      841 tgtaggagta ttttaaacct ggcctttagt atctctttct aactattcaa ataataaaac
      901 ttatacccac caatctgagc aggtcattcc aaggatctca ctatttgcag ccatttgata
      961 attattggaa taacttttag attggctgaa gattctcatc aataattcac ttgccatatc
     1021 ttctcaaccg cgattggtat gttctaattg ctctcattag atctattttc ctaaactctg
     1081 gccagaaaac atccatgaag actaactcgc tgtaggcgct ttgccatata aggaacccac
     1141 ttagcctttt ttcccctgac gtc
//
LOCUS       DATLQL010000419         1064 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_461526, whole genome shotgun sequence.
ACCESSION   DATLQL010000419 DATLQL010000000
VERSION     DATLQL010000419.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1064)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1064)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1064
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_461526"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..516)
                     /locus_tag="VNB68_04390"
     CDS             complement(<1..516)
                     /locus_tag="VNB68_04390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="[LysW]-aminoadipate/[LysW]-glutamate kinase"
                     /protein_id="HVD36622.1"
                     /translation="MIVIKIGGSIVNDLHSSAIKDIHNILSNEKLLLVHGGGKEVTSI
                     ATKLGKEQRFIVSPGGIRSRYTDKETAEIYTMVMSGKINKLIVKMLLKEEIKAVGLSG
                     IDNHILGAIRKSKLTVINEKGRKMVIDGGYTGKIKTVGTELLNLLLNEGYVPVISPVA
                     LSEEFDFLNVDG"
     gene            complement(513..>1064)
                     /locus_tag="VNB68_04395"
     CDS             complement(513..>1064)
                     /locus_tag="VNB68_04395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asd/ArgC dimerization domain-containing protein"
                     /protein_id="HVD36623.1"
                     /translation="DTEHVIVDSKIGSSGAGSQEGNGTHHAMRYGVIRPYKPAKHRHT
                     GEIEQELGILAHKKVMVSMSPHAVNLVRGILTTNHVFLKEPVSEIELWKYYRDAYKSE
                     PFIRLIRDKKGLYKFPDPKFVVGSNFCDVGFDLDEDNNRVVALSASDNLMKGAAGSAI
                     QNMNIMSGFSEVEGLRYTPLTPV"
BASE COUNT          279 a          252 c          162 g          371 t
ORIGIN      
        1 tccatcaacg ttcaagaaat caaattcttc gctgagtgca actggagaaa tgactgggac
       61 atatccttcg tttaataaca agtttaataa ttctgttcct actgttttta tcttaccagt
      121 gtaaccacca tcgattacca tctttcttcc cttttcattt atgacagtta atttgctctt
      181 tctaattgct cccaaaatgt gattatctat tccagaaaga ccaactgctt taatctcttc
      241 cttgagtaac attttgacta ttagtttgtt tatcttgcct gacatcacca tggtatagat
      301 ttcagcagtt tctttgtcag tatatctgct tcttataccc cccggagata ctataaaccg
      361 ctgttccttt ccaagtttag ttgctataga tgttacctcc tttcctcctc cgtgaaccaa
      421 caataacttt tcgttcgaca aaatattgtg aatgtctttt atagcggatg aatgcaaatc
      481 gtttactatg ctacccccaa tttttatgac gatcataccg gggttaacgg tgtgtatctt
      541 aggccttcca cttcactaaa tccactcata atattcatat tctgtattgc cgagcctgct
      601 gcacctttca ttaaattatc agaggctgaa agcgctacaa ctctgttatt atcttcatct
      661 aaatcaaatc ctacatcgca aaaattagat cctaccacaa atttcggatc agggaactta
      721 tacaatccct ttttgtctct tattaatctg atgaacggtt cacttttgta agcatctctg
      781 taatatttcc acaactctat ttcagagaca ggctctttca aaaagacatg attggtggtc
      841 aatattcccc tgaccaaatt gaccgcatgg ggactcatac tgaccatcac tttcttgtgc
      901 gcaagtatgc ccaattcttg ttcaatttct ccggtatgtc tgtgcttggc tggtttgtac
      961 ggtctaatga ctccatatcg catagcatgg tgagttccat ttccttcctg agagccagcg
     1021 cccgaagagc ctatcttgct atcaacaata acatgttccg tatc
//
LOCUS       DATLQL010000420         2060 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1347559, whole genome shotgun sequence.
ACCESSION   DATLQL010000420 DATLQL010000000
VERSION     DATLQL010000420.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2060)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2060)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2060
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1347559"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            111..485
                     /locus_tag="VNB68_04400"
     CDS             111..485
                     /locus_tag="VNB68_04400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36624.1"
                     /translation="MNSHDDYRKKVDSGLIKLGSFFGDMAKTSIGTNIYGGIRVGVSS
                     PVHGGFVTGDIPSYVIFGAGIGAENVELELSSAIRTQKRMMSRRDVTMSEQYESLMID
                     VFEQAADERAKKGIKAKKFSLQ"
     gene            complement(504..1979)
                     /locus_tag="VNB68_04405"
     CDS             complement(504..1979)
                     /locus_tag="VNB68_04405"
                     /inference="COORDINATES: protein motif:HMM:NF014411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase"
                     /protein_id="HVD36625.1"
                     /translation="MRQERSNNDNYIYLKKKILPIRIFPQVLERTRKHSGSNGGSPIL
                     SVVIGTKPDFYKQAPILIEAIRQKLPSFVIDTGQHFDELLGFGIKEFALEDQIACNMQ
                     IRGDLMEKASELILKFGSFGRYWRKEFGNSSHLLPIVHGDTLVAGIAPLAWVFGMGQK
                     VAQNEAGLRSMSPDSIKHLRVREDPTKSFVEKFIESQFEGGWFYAREEPFPEQIDTWI
                     CSAGTQFFFAPTKINKDNLIREGYPEEFIRVVGNSVVDAIEIKRKHRPSTSIFDLYPK
                     LETGEWLRMDIHRRENLTEHRFSSIIKSLTYLIKNSNHKIILVMLNAMKSALRSYNLE
                     QSLINLAKSYPKKFLITPLWREYSQVIEFLDSGHCWAEITDSGSMQEELLYFPKVLSL
                     TVRLNTDRPETIFDARSNILLPPVNPTWITAIIDEAFNRSEGLGLQLKKKKKIYGQPG
                     KVSKEIVRVIKKEFENGDANFYPWLHQRIGLWKERQVIEYM"
BASE COUNT          593 a          419 c          392 g          656 t
ORIGIN      
        1 ctaacaagtc acatagcggc tacattggac actcttatgt aggataatgg gttaacctgg
       61 gagctaacac cacgacttcc gatctaaaaa tgacatatgg tagtatatcg atgaattcac
      121 acgatgatta cagaaaaaaa gttgattctg ggttaatcaa acttggatcc ttttttggcg
      181 atatggctaa aacgtcgatt ggtacgaata tttatggagg aataagggtt ggtgtatcat
      241 cccctgtaca tgggggattt gtcacaggag atattccaag ctacgtcatt tttggagccg
      301 gtatcggtgc tgaaaacgtt gagctggaat tgagctcggc catacggaca caaaaaagaa
      361 tgatgtctag aagagacgtg actatgagcg agcaatatga atcattgatg atagacgtct
      421 tcgagcaagc tgccgacgag cgcgcaaaaa agggcatcaa ggcaaaaaaa ttcagcctgc
      481 aataatagta gtaatagtag gagttacatg tattctataa cttgtctttc tttccatagt
      541 ccaatccttt ggtgtaacca tggataaaag ttagcatctc cattttcaaa ttccttctta
      601 attactctca caatctcttt agaaaccttt ccaggttgac cataaatctt tttcttcttt
      661 ttcagttgca atcccaaacc ttcgcttcta ttaaaagctt catcgattat tgctgttatc
      721 catgtaggat ttactggtgg gagtaagata ttacttctgg cgtcgaatat ggtttctggt
      781 ctgtctgtat taagccgtac agtcaatgaa agaacttttg gaaagtataa cagttcttct
      841 tgcatagaac ctgaatctgt tatttccgcc cagcagtggc cactatcaag aaattcaatt
      901 acttgggaat attcgcgcca caaaggagtg atcaagaatt tttttggata tgattttgcg
      961 aggttaatca agctctgttc caaattatag gaacgtaacg cagatttcat agcgttgagc
     1021 ataactaaaa ttatcttatg gttagagttc ttgatcaaat aagtaagact tttgattatg
     1081 gaagaaaatc tatgctcagt caaattttcc cgccgatgaa tatccatcct gagccattcg
     1141 ccggtttcta gtttaggata aagatcgaat atacttgtgc ttggcctgtg cttcctcttt
     1201 atttcaattg catcaacaac agaattccct acaacacgga tgaattcttc aggatatcct
     1261 tcccttatca gattgtcttt atttattttt gttggtgcaa aaaagaattg cgtgccagca
     1321 gaacaaatcc aagtatcgat ctgttctgga aatggttcct ctcttgcata aaaccatccc
     1381 ccttcaaatt gagattcaat gaatttttcc acgaaagatt tggtaggatc ttcgcgcacc
     1441 cttagatgtt ttatggaatc tggactcatt gatctgagtc ctgcctcatt ttgagctacc
     1501 ttttgaccca tgccgaacac ccaagccaat ggcgcaatac cggcaaccag agtatccccg
     1561 tgaactatgg gtaacagatg tgaactattt ccaaattcct tcctccaata ccgtccgaat
     1621 gaaccgaact ttagtatgag ttcactcgct ttttccataa ggtcacccct gatttgcata
     1681 ttgcatgcaa tttgatcttc caaagcaaac tcttttatcc caaatcccag gagttcatca
     1741 aaatgctgtc cagtatcgat cacaaaggac ggtagtttct gtcttattgc ttctattaat
     1801 atgggcgcct gtttatagaa atcgggttta gttccgatta caacagaaag gatagggctt
     1861 cctccattac taccagagtg ttttcgtgtt cgctccaaca cttgaggaaa aatgcggata
     1921 ggaagtatct tttttttcaa gtagatgtaa ttatcattat ttgatctttc ttgtctcaaa
     1981 aattttcatc caccagtctc ccgtggtttc gtgtaggttt cttaatgagt agtacaccaa
     2041 ttatcattat tccaaatccc
//
LOCUS       DATLQL010000421         1426 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1347738, whole genome shotgun sequence.
ACCESSION   DATLQL010000421 DATLQL010000000
VERSION     DATLQL010000421.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1426)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1426)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1426
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1347738"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..676
                     /locus_tag="VNB68_04410"
     CDS             <1..676
                     /locus_tag="VNB68_04410"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HVD36626.1"
                     /translation="RHTGHDKARRFFTPDNSSSYDSVVRFTTLGRDYVWKKKIIEMIE
                     KETLILDLACGTGILSSLIAFSNNTRKVVGLDLIFPYLESVKKKTDKISLMNGTAEIL
                     PYKNKSFGSVVSSYLAKYVNIEMVVAECWRVLEDNGTVVFHDFTFPQNTVIRHIWRAY
                     FLILRSSGLLVKNWATVFRELDQVIINSKWITNTREALKQTGFRDIKCTYYNLGISAI
                     ISASKP"
     gene            673..1383
                     /locus_tag="VNB68_04415"
     CDS             673..1383
                     /locus_tag="VNB68_04415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiA family prenyltransferase"
                     /protein_id="HVD36627.1"
                     /translation="MNEDARLKEWFVPKFGPLKFRIFVGLLFLPYTGMCVSYTIIGSM
                     LSHDLHWDRVAAIVVIYTLALGVSAHAADSLGSKRIKPWGTYFKRRDLALLMVVSLSA
                     SYLIGTYYIVSYVPLLSIVAILEGFFVFVYNFELLKGFFHKNFWFSLSWGALPVLAGY
                     VMQTNSIGILPILVSILAGFLSYVEIKISRPYKELKRSDADGEDARRLETILKTTSLG
                     TIISAIVIIICRMNFHIL"
BASE COUNT          403 a          249 c          308 g          466 t
ORIGIN      
        1 aaggcatacg ggccatgata aagctagacg attcttcact cccgataact cttctagcta
       61 tgattctgtt gtacggttta ccacacttgg ccgggattat gtatggaaaa agaagattat
      121 agagatgata gagaaagaga cgttgatcct tgacctagca tgtggaacag gaatactctc
      181 atcactcatc gcctttagta ataatactag aaaggtagta ggtctagatc ttatttttcc
      241 ttatctggag tctgttaaaa agaaaactga taaaatttct cttatgaacg gtacagcgga
      301 aatattaccc tacaaaaata aatcatttgg ctctgttgtt tcatcgtatc ttgctaaata
      361 tgtcaatatt gagatggttg tagctgaatg ctggcgcgtt cttgaggata atggtactgt
      421 agttttccat gattttactt ttccacagaa tactgttatt cgccatattt ggagagccta
      481 ctttttgatt ttgcgctcga gcggcctctt agtaaaaaat tgggcgaccg ttttcagaga
      541 gttagatcaa gtaataataa atagcaagtg gataacaaat accagagagg cattaaagca
      601 aacgggtttc agggacataa agtgtacata ctacaaccta ggaatctctg ccattatatc
      661 tgctagcaag ccatgaatga agacgctcga cttaaggaat ggtttgtacc aaaatttggc
      721 cccctgaaat ttcgaatttt tgtaggtttg ctattcctac cttatactgg aatgtgtgtc
      781 tcctatacta taataggctc aatgctgtca catgatttgc actgggatag ggtcgctgca
      841 atcgtcgtga tatacacatt ggcattggga gtgtctgctc atgcagccga tagcctgggg
      901 tccaaacgta ttaaaccgtg ggggacttac tttaaaagac gcgaccttgc gctactgatg
      961 gtcgtcagtt tgtcagcttc ttatttgatt ggaacttatt atattgtctc ttacgtgcca
     1021 ttgctctcga ttgtggctat tctggaagga ttttttgtgt ttgtttataa ttttgaattg
     1081 ttaaagggtt tttttcataa aaatttttgg ttttcattat catggggagc cctgccagtt
     1141 ttggctggat acgtgatgca gactaattcg attggaatct tgcccatatt agtgtctatt
     1201 ctagcaggtt ttttaagcta tgtagagatc aaaatctcgc ggccttataa ggaattaaaa
     1261 agaagcgacg ctgacggaga ggacgcaagg aggctagaga ccatcctcaa aacaaccagc
     1321 ttgggtacta taatctctgc catagttatt attatctgca gaatgaattt tcatatctta
     1381 taaatgagta tactttatcg taaggttaaa tggctgtggt tgttat
//
LOCUS       DATLQL010000422         1136 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_283161, whole genome shotgun sequence.
ACCESSION   DATLQL010000422 DATLQL010000000
VERSION     DATLQL010000422.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1136)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1136)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1136
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_283161"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..247)
                     /locus_tag="VNB68_04420"
     CDS             complement(<1..247)
                     /locus_tag="VNB68_04420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HVD36628.1"
                     /translation="MCPRLTNYITEVGQNKVRRFRHENYWAKPLPSFGDVKAKLLIVG
                     LAPAAHGDNRTGRMFTGDSSGEWVAKVLFKTGFANLAT"
     gene            744..>1136
                     /locus_tag="VNB68_04425"
     CDS             744..>1136
                     /locus_tag="VNB68_04425"
                     /inference="COORDINATES: protein motif:HMM:NF014049.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DUF92 domain-containing protein"
                     /protein_id="HVD36629.1"
                     /translation="MLPIDQTVTWLSLLFAMTILANRLHVLDTFGAMVALPIGFTVLW
                     LGTISWFFILLLFFLLASCFTKYKYKYKEKMGYSEGNRGARGWKSVLANGGPSALFAV
                     LYHFSNNNPVFVLAFVGSISFALSDTVAT"
BASE COUNT          327 a          226 c          212 g          371 t
ORIGIN      
        1 ttgtagccag gttggcaaat ccggtcttaa acagtacttt agcaacccat tcgccagagc
       61 tatctcctgt aaacattctt ccagtcctat tgtccccatg agcagcaggc gccaatccaa
      121 cgattaataa cttagctttt acatccccaa aactcggaag aggtttagcc caatagtttt
      181 cgtgccggaa tcttcttacc ttattttgtc ctacctctgt aatgtaatta gttaaacgcg
      241 gacacaacct gcaatgaatt acgcgttgac ttactctatt caacaagata cattctggtg
      301 tgcagctcat aataatatga agtcatattg gaccattcat ataatactta aagtggcagc
      361 gagcagatat agaaaaccgc gtacatagtg acctgtagat taatatcaag ccgctttacc
      421 cttttctaaa tcatactttc ggatcttact tttatctatg atcatttgta aagcctattt
      481 tgtcaaggtt ggtggtaaac gcacagaaaa ctgaactata cgagtatcct tatagaagag
      541 cataataatt ctgttctttg aattgccctc atgtagagat gcctttacca aagttatagc
      601 ccaggatact caataagaag agtgaatttc ttttcttaac agtatatata gttcgcgcta
      661 gggctaccat ttagttgaat tattatcatc ctcaggaagg aaatttatct aaacatacac
      721 ccaagggcga atatcattag tagatgcttc ccatagacca aactgtcaca tggctttcat
      781 tattattcgc catgactatt cttgctaata ggctgcacgt acttgacacg tttggtgcaa
      841 tggtagcttt accgattggt tttacagtgt tatggcttgg tactatttcg tggttcttca
      901 tattgttgct attttttctt ctagcttcgt gtttcactaa atacaaatac aagtataagg
      961 agaaaatggg atattcggag ggaaatagag gggcaagagg gtggaaaagt gtactagcaa
     1021 acggaggacc ttctgcactt tttgccgtat tgtatcattt ttccaataac aatccagtat
     1081 ttgtattagc atttgttgga tcgattagtt ttgcgctgtc agatactgtc gctact
//
LOCUS       DATLQL010000423         1697 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1348255, whole genome shotgun sequence.
ACCESSION   DATLQL010000423 DATLQL010000000
VERSION     DATLQL010000423.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1697)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1697)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1697
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1348255"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1255
                     /locus_tag="VNB68_04430"
     CDS             <1..1255
                     /locus_tag="VNB68_04430"
                     /inference="COORDINATES: protein motif:HMM:NF014794.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HVD36630.1"
                     /translation="TIASTILDNPEDAPAEIERVLSAAIRHKMPVYIELPRDNVYKTI
                     SNPRICSVPEFNSDAAVIREALQEAVSMINSAQMPVVVAGVEVQRFGLQELLLKFLQK
                     TNIPVVSTPLSKSVINELHPSYLGVYEGAMGYPHVRNYVESSDCVLLIGTFMTDIDFG
                     NSPTPVEQGKTINITSSKLSIKHHNYENVEMRDFLEKLNNADLRKRNIDTSLKREGIL
                     ALQQRPSNRDKITVDGLFGKLNHFLTPDYMVIADVGDALFGGLDLVIHKGTEFLSPAY
                     YLSMGFAIPASIGAQLANPTIRPIVLVGDGAFQMTGTELSTIAREKLNPIIILLNNDG
                     YRTERTILDGPFNDLYSWDYSKIIELLKVGVSFDVHSNREFESALEKAKENGREFVLI
                     NVHLDRFDASAALKRLTESLSKKVR"
     gene            1444..>1697
                     /locus_tag="VNB68_04435"
     CDS             1444..>1697
                     /locus_tag="VNB68_04435"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HVD36631.1"
                     /translation="MNEFFTEIWGHRIRYIKSKDGGNPIAVLFIHGLGSAADRWMDLP
                     EAISFYFSVYALDLVGFGKSDKPTSLSYDIPEFVEFLREF"
BASE COUNT          540 a          316 c          347 g          494 t
ORIGIN      
        1 aacaattgct tctacgatat tagataatcc tgaagacgcg cctgcagaaa tagaacgagt
       61 tctctcggca gcgataagac ataaaatgcc agtttatatc gagttaccac gagataatgt
      121 atataagacg atttcaaatc ctagaatatg ctcagtacca gagttcaatt cagacgctgc
      181 tgtaattagg gaagcactac aggaggccgt ttcaatgata aattctgcac aaatgcccgt
      241 cgttgttgcg ggagttgaag tacaaagatt tggattgcaa gaattacttt taaagttcct
      301 ccagaaaacg aacatacctg tagtatcgac tccactgagc aagtcagtta taaatgaact
      361 ccatccttca tacttgggtg tttatgaagg ggctatgggc tatccacacg taaggaatta
      421 tgttgaatca agtgactgtg ttctcctaat aggtaccttt atgaccgaca ttgattttgg
      481 aaactctccc acacctgtgg agcagggtaa gacaataaac atcacgagtt caaaattatc
      541 tatcaaacat cacaactatg aaaatgtcga aatgcgggat tttctagaaa aactaaacaa
      601 tgccgacttg agaaaacgaa atatagacac tagtttgaag cgcgaaggaa tcttggcatt
      661 gcaacaacgt ccttccaaca gggacaaaat aactgtcgac gggctttttg gcaagcttaa
      721 tcatttcttg actccagact atatggttat agcggatgtt ggtgatgcgc tgtttggggg
      781 tcttgatctc gttattcata agggaacgga attcttgtcc cctgcgtatt atctatcgat
      841 gggtttcgcc atccctgctt caattggagc ccaacttgcc aatccaacca taagacctat
      901 tgttcttgtc ggggatggcg catttcagat gacaggaaca gagctaagca ccatcgcgcg
      961 tgaaaaactg aatcccatta ttatattgtt aaataatgat ggctacagaa cggaaagaac
     1021 tattcttgat ggcccattta atgatttgta ctcttgggat tattccaaaa taatcgaact
     1081 tctaaaagta ggtgtcagct ttgatgtcca tagtaacaga gaattcgagt cagcactgga
     1141 aaaggcaaaa gaaaatggcc gagagtttgt tctaattaac gttcaccttg acagattcga
     1201 tgcttcggca gcattaaaga gactaactga atctttgagt aagaaagtac gataattttt
     1261 cgtgcccaga aatattctaa aattgcttca ttatggactt tcattctaat ggtctaataa
     1321 ttcatatttc cgaaatatta ctagaagttg taacaaaacc gcatagggag cgaatattac
     1381 agagtatcgt tggcataact gtcgggttaa ttattaatgt cagacatttc atattaaaaa
     1441 tgattgaatg aattctttac agagatctgg ggacatagaa taagatatat caaatcaaag
     1501 gatgggggaa atccaattgc cgttctcttt attcacggtc taggttctgc tgcagacagg
     1561 tggatggatc tacccgaagc tatatcattt tactttagtg tctatgcatt agatctcgtt
     1621 ggctttggaa aaagtgacaa acctacatca ctaagttacg atataccaga attcgttgaa
     1681 ttccttcgag aatttat
//
LOCUS       DATLQL010000424         1246 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_818927, whole genome shotgun sequence.
ACCESSION   DATLQL010000424 DATLQL010000000
VERSION     DATLQL010000424.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1246)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1246)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1246
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_818927"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1224)
                     /locus_tag="VNB68_04440"
     CDS             complement(<1..1224)
                     /locus_tag="VNB68_04440"
                     /inference="COORDINATES: protein motif:HMM:NF015706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EF-Tu/IF-2/RF-3 family GTPase"
                     /protein_id="HVD36632.1"
                     /translation="MMVTTINVDPQAGRIATGRLFSGTVKDGDEVYLIDGKRMGKVQS
                     VNIYMGNTREVVNMLPAGNIPALLGIDHAIAGETFSSVKNVPAFESIKYVSEPVVTIA
                     IEPKHPKDLPKLVEALRRITVEDPNLIVKINEETGETLLSGMGVLHLEIATSLILETG
                     LEITTTQPLINYRETIRNNAGPIMSKSPNKHNKIFMRVEPLGADIIELIKNGHIHEDL
                     DRKQMAKMLREKGWSANEAKNVSAVDISGNVLVDETNGVQFIQESMDSIRSGFDDVVH
                     SGPIAHETLRGVKFVLHHFVPHEDPAHRGLAQLMPATRRSMLGSMLLANPALLEPILG
                     MEIKCPQEQIGTVAGILSGKRGKLLSVEQKGVISIIQGEVPASETFDLSEVMRGGTAG
                     KALWNTYFKTWQVVPQ"
BASE COUNT          332 a          273 c          217 g          424 t
ORIGIN      
        1 ttgcggtaca acttgccaag tcttaaaata agtattccat aatgccttgc cagcagttcc
       61 acctcgcatt acctctgaca agtcaaatgt ctctgatgca ggaacttcac cttgtataat
      121 gctaattacg cctttttgtt ctacgctcaa tagttttcca cgctttcctg ataagattcc
      181 tgctactgtt ccgatttgtt cttgcggaca ttttatttcc ataccaagaa tcggttctaa
      241 caatgctgga ttcgctaaaa gcattgatcc cagcatggat cgcctagtgg ctggcattag
      301 ttgtgccagg ccacggtgag cggggtcttc atgtggtaca aaatggtgca gaacaaattt
      361 tactccgcga agcgtttcat gagcaatggg acctgaatgt actacatcat caaaaccaga
      421 ccttatggaa tccatcgatt cctgtataaa ttgaacacca ttggtttcat ctacaagcac
      481 attgccactg atatcaacag cagaaacatt ctttgcttca tttgcactcc aacccttttc
      541 ccttagcatt tttgccattt gttttctatc caaatcctca tggatatggc cattctttat
      601 taattcaata atatctgctc ctaatggttc aactctcatg aaaatcttat tgtgtttatt
      661 tggagattta ctcataatag gaccagcatt attgcgtatg gtttcacgat agttgataag
      721 aggctgagta gtagtaattt ccaaaccagt ttcaagtatt agagatgtag cgatctcaag
      781 gtgtagcact cccataccag atagtaatgt ttcaccagtt tcttcgttga tttttacaat
      841 taggtttgga tcttcaacag ttattcttct taatgcttca accaattttg gtaaatcttt
      901 tggatgcttt ggttcgatgg ctattgtaac aactggttct gaaacatatt ttattgattc
      961 aaatgcaggt acatttttga ctgatgagaa tgtctctccg gcaattgcat gatctatacc
     1021 aagcagagct ggtatatttc cagcaggaag catgtttact acttctcgag tgttacccat
     1081 gtagatattt actgattgaa ctttacccat tcttttacca tctattagat aaacttcgtc
     1141 accgtccttt accgtccctg aaaacaatct acccgtagct atcctaccag cctgagggtc
     1201 cacattaatt gtagtaacca tcattaaaat tggtcctttg tcgtcg
//
LOCUS       DATLQL010000425         1012 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_463581, whole genome shotgun sequence.
ACCESSION   DATLQL010000425 DATLQL010000000
VERSION     DATLQL010000425.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1012)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1012)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1012
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_463581"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(285..497)
                     /locus_tag="VNB68_04445"
     CDS             complement(285..497)
                     /locus_tag="VNB68_04445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36633.1"
                     /translation="MDLTMNGIVITDAIKFVQTNKGKLAAAASAKEDNNGNESKESDF
                     REYQVEQNQEEEDGEPSEQKTTNQVF"
BASE COUNT          302 a          215 c          168 g          327 t
ORIGIN      
        1 atgctacctt aaagaaactg gaagagtctt ttggtaaagt cataataact tcgaatccaa
       61 atgacaaggc cacaatattc ccaccacagg aaatacaagt acagcaccca ttcatggtca
      121 atactacgta agcccaggaa cagagaacac atgcagggac gttcaatcag acactagaat
      181 actagataac tctaaaccat tatttttcta tcactaagac aaaaaattat cgcgctagat
      241 attacgtagc taagatatag tgaagcacca catattaaca aggttcaaaa aacctggttt
      301 gttgtctttt gttcactagg ttctccatct tcctcttctt gattttgttc tacctgatat
      361 tctctaaagt ctgattcctt tgactcattc ccgttattat cttccttagc agatgcagcg
      421 gcagcgagct tccccttgtt tgtctgaaca aacttaatag catccgttat tacgatacca
      481 ttcatagtta aatccatttt gcatttgttg caatcattga taagagctag agcttgcaat
      541 actgttttgt tatcagtaat ggtaaccgta tgaccattat cattattgac gttcctagat
      601 ttatttacaa tccttcagca tatctttaat acctgattga taccagtcat gaggttatct
      661 aacactcggt aagtgtccag gtgattggaa tgatatgctt ctatactgca accgtttaac
      721 tccaacacag tttctttgtt tgcaaaagtg atcgctagtt tgtgttcaaa caatcctttc
      781 attctctttg ttagtttgat tgcaatgtct tggttgggcc ctgttacgat acatatttaa
      841 gaaccacgat agtcgtcatt ccttagacaa agccaggcca tgaaccttag cataaattct
      901 ataagtccta agccagtagc ctctttaccc agaggtgttt ctctgaatgg atacatgact
      961 tcggaagaag gagcactgtt aagatatcct ctatcgaata aagccttgta ca
//
LOCUS       DATLQL010000426         1825 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_106475, whole genome shotgun sequence.
ACCESSION   DATLQL010000426 DATLQL010000000
VERSION     DATLQL010000426.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1825)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1825)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1825
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_106475"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..505
                     /locus_tag="VNB68_04450"
     CDS             <1..505
                     /locus_tag="VNB68_04450"
                     /inference="COORDINATES: protein motif:HMM:NF012444.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36634.1"
                     /translation="DHVAKVRKAVRVPILMKDIVVSQVQIDAAKRIGADCILLIKTIF
                     DDGMAEGTIEKFMQYARDKDLYVLVEIHKESEFKEVMNSIKEPLLIGINNRNLNNLNV
                     DLDVTKRLMQTFQKGNKVIISESGISTPDQIRSLRPLGVDAFLVGTTIMESKDQISKV
                     AELCHAE"
     gene            551..1750
                     /gene="trpB"
                     /locus_tag="VNB68_04455"
     CDS             551..1750
                     /gene="trpB"
                     /locus_tag="VNB68_04455"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HVD36635.1"
                     /translation="MINLSKYPLNGKYGNYGGKYIPETLIPAIDELTEAYDKLKKEPK
                     FKKDFSSYLSHYAGRPTPLYFAKNLTTHAGGARIFLKREDLLHGGAHKTNNCIGQCLL
                     AKRMGKTRIIAETGAGQHGVGTAMAASMLGLKCEVYMGALDVKRQRLNVYRMELLGAK
                     VHTVNSGTRTLKDAINEAIRDWIVNVKDTYYLIGSVVGPHPYPMIVRDFQSIIGREIK
                     VQMNEITNSLPNILVACVGGGSNAIGTFYPFVDYSKVRLYGVEAGGMGLRSGRHAATL
                     GAGSEGILHGMRTYILQDKDGQIKNTHSISAGLDYPGVGPQHVHLKEMKRANYVAVTD
                     REALDAFHTLSRLEGIIPALESAHAVSYAMKLARKIGRRKDIVVTLSGRGDKDIEEVM
                     RFTKFKR"
BASE COUNT          625 a          310 c          429 g          461 t
ORIGIN      
        1 agaccatgtc gcaaaagtaa gaaaagctgt cagagtgccc atcttgatga aagatatcgt
       61 agtcagtcag gtccagatcg acgctgcaaa aagaattgga gcagattgca ttctactaat
      121 aaaaaccata tttgatgacg gaatggctga gggcaccatc gaaaagttta tgcaatatgc
      181 acgagacaaa gatttgtacg tcttggtaga gattcacaaa gaatcagaat tcaaggaagt
      241 catgaatagc atcaaagaac cgcttttaat tgggattaac aacaggaatt tgaataatct
      301 taacgttgat ttagatgtta ccaaaagact aatgcaaaca tttcagaagg gaaacaaagt
      361 tattatcagc gagagtggga tttccactcc ggatcaaata agaagtttga ggccattggg
      421 tgttgatgca ttcttagtgg gaaccactat catggaatcg aaagatcaaa tatctaaagt
      481 tgcagagtta tgtcatgcag agtaagttaa atcgagtaag aaataaaatg atattcttga
      541 gggcacgttc atgatcaatt tatctaaata tccgctaaac ggaaaatatg gaaattatgg
      601 ggggaaatac atacctgaaa cgctcatacc tgctattgat gagctcacgg aagcctatga
      661 caagttaaag aaggagccca aatttaagaa ggatttttca tcttatctgt cccattatgc
      721 tggaaggcca acgccacttt attttgcaaa gaatctcaca acccacgctg gcggagcaag
      781 aatttttctc aagcgagagg atctgctaca cggtggtgcc cacaagacca ataattgtat
      841 tggacaatgc ttactggcaa aaaggatggg caaaaccagg attattgcag aaaccggtgc
      901 aggtcaacat ggggtaggca ctgcgatggc cgcatcaatg ctaggattaa aatgcgaggt
      961 ctacatgggg gcgttagatg ttaaaagaca acgacttaat gtctatcgta tggaattatt
     1021 gggtgctaaa gtacacactg ttaattctgg tacgagaacc cttaaggatg ccatcaacga
     1081 agccataaga gactggatag tcaatgttaa ggacacttat tatctaattg ggtctgtcgt
     1141 gggtcctcat ccatatccaa tgatagtacg agattttcag agtataatag gtagagaaat
     1201 aaaagtacag atgaacgaaa tcacaaattc gttgcctaac atcttagtag cgtgcgtagg
     1261 aggaggaagt aacgccatag ggactttcta cccatttgtt gactattcaa aagtacgtct
     1321 ttatggtgtg gaagccggag gaatgggatt gagatctggg aggcatgctg ctacattggg
     1381 cgcaggttca gaaggaattt tgcatggaat gagaacatat atacttcaag acaaagatgg
     1441 ccaaattaaa aacacgcata gtatttccgc agggcttgat tatcctggag tgggtcctca
     1501 acatgtacac ttaaaggaga tgaaaagggc taattacgtt gcagtcactg atcgtgaggc
     1561 cctagatgca ttccatacac tctcaagact tgagggaatt ataccagcac ttgagtccgc
     1621 tcatgcagtt tcttatgcaa tgaaattggc gaggaaaatc ggaaggcgta aggatattgt
     1681 tgtcactctt tcaggaaggg gagacaagga tatcgaagag gtaatgagat ttactaaatt
     1741 caagaggtag aacataaaaa atgtctttcg aagaaaataa tcgaataaac aaaaaattta
     1801 ctgacctaaa gtcaagggga gaaag
//
LOCUS       DATLQL010000427         1110 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1349655, whole genome shotgun sequence.
ACCESSION   DATLQL010000427 DATLQL010000000
VERSION     DATLQL010000427.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1110)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1110)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1110
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1349655"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..298)
                     /locus_tag="VNB68_04460"
     CDS             complement(<1..298)
                     /locus_tag="VNB68_04460"
                     /inference="COORDINATES: protein motif:HMM:NF019429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TfuA-like protein"
                     /protein_id="HVD36636.1"
                     /translation="MNKPIIFLGPSLRHEEARKIFDADYRPPAKKGDFLRLSGFTNDV
                     RIVGLVDGLFLQDYPPTPIEVYHLTIKKNVIVIGAASIGALRAVELEKYGMIGIG"
     gene            complement(295..>1110)
                     /locus_tag="VNB68_04465"
     CDS             complement(295..>1110)
                     /locus_tag="VNB68_04465"
                     /inference="COORDINATES: protein motif:HMM:NF014661.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcaO-like family protein"
                     /protein_id="HVD36637.1"
                     /translation="VNPFAFHHTNGLASGNVLEEAICHSLCEVIERDAMSIADLRASA
                     MPFHLLQHIAKTLNAKEYPLAAIPANKFIDDPGIFPDVDIQAVDFNPLKIIVRKFQKA
                     GIPLIIKDITSDIGIPTFNASSIEWLTHDYGYLAEGHGTHPDSRIALLRAVTEVSQTR
                     AANIQGARDDLRKIKYGENNTDDKRAWQFMPSKKVVKFSEVKTFFNEDILDDIKLILN
                     HLAEAELKTAIIVDLTNPQIGIPVVRAIVPGLETFKITKSIMGRRAKKSFKIL"
BASE COUNT          307 a          230 c          205 g          368 t
ORIGIN      
        1 taccaattcc aatcatacca tatttttcta attctactgc acgcaatgcg ccaatactag
       61 cagctccgat aactattaca ttttttttta tcgttaaatg ataaacttct atcggtgttg
      121 gtggatagtc ctgcaagaag agaccatcaa ccagacccac tatcctgacg tcatttgtaa
      181 aacctgatag ccttagaaaa tctccctttt ttgctggagg cctgtagtct gcgtcaaaaa
      241 tttttcttgc ttcctcatgt ctaaggctgg gcccgaggaa aataatgggc ttattcataa
      301 tattttgaag gactttttgg cacgccgacc cataatggat ttggtgattt tgaaggtttc
      361 aagaccaggt actatcgctc gtactacggg aatacctatc tgtggattag tcaaatcaac
      421 tattatggct gttttcaatt cagcttcagc taaatgattt aaaatcagct tgatatcatc
      481 aagaatatct tcgttaaaga atgttttaac ttcagagaat ttaacaacct tcttggacgg
      541 cataaattgc catgcgcgtt tatcatcagt attgttttct ccgtacttaa tcttcctaag
      601 gtcatctcgt gcaccttgga tgttagcagc tctagtttgc gagacctcag ttacagctct
      661 caaaagtgca atcctggaat ccggatgtgt tccgtgacct tctgcaagat aaccataatc
      721 atgggtcagc cattctatac tgcttgcgtt aaatgtcggg atcccgatat ctgatgtaat
      781 atcctttata attaaaggaa ttcctgcttt ttgaaatttt ctgacaataa tctttaatgg
      841 gttaaagtca acggcttgta tatcaacatc aggaaaaatg cctggatcat ctataaattt
      901 gttggcaggg atcgcggcta gtggatattc tttcgcattt aatgtctttg caatatgttg
      961 cagcaaatga aatggcattg cgctagcacg tagatctgct atactcattg cgtccctttc
     1021 tattacttca cataatgaat gacaaattgc ctcttctagt acattgccag atgcaagtcc
     1081 attcgtgtgg tgaaacgcaa acggatttac
//
LOCUS       DATLQL010000428         1878 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_285528, whole genome shotgun sequence.
ACCESSION   DATLQL010000428 DATLQL010000000
VERSION     DATLQL010000428.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1878)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1878)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1878
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_285528"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(119..222)
                     /locus_tag="VNB68_04470"
     tRNA            complement(join(119..178,208..222))
                     /locus_tag="VNB68_04470"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(156..158),aa:Arg,seq:cct)
     gene            complement(540..1733)
                     /locus_tag="VNB68_04475"
     CDS             complement(540..1733)
                     /locus_tag="VNB68_04475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol-3-phosphate synthase"
                     /protein_id="HVD36638.1"
                     /translation="MSKKVRVAIAGVGNCASALVQGTSYYHRYHSSDDRKKGNENDNN
                     NNNNNNNNSSTRSNISSSNDSTSTSGSHLAPPGLIAYNLGGIEPSDIEFVAAFDVVES
                     KVGRDLADAIFASPNNTIKISDVNKTGITVEKGEVLDGVGKHLNERVKISDKSPPNIA
                     QILKDSGAEILINYLPVGSRQATKYYVEQCLDAGVSFINAIPVFIASTPKWQQAFAGK
                     NLACAGDDVMSQLGATVLHKTLVKLFVDRGVKIDETYQLNVGGDMDFYNMLDEERLED
                     KRISKTSAVAAMVPYPIPMRIGPSDFVGFLDNDKICYINMRGKYFGNVPIELDVKLKV
                     VDAYNSAGVMIDAIRGTKLAIDRGTSGPLESISAYCFKHPPVQMTYSDAKDRFMEFIE
                     GKRER"
BASE COUNT          515 a          414 c          341 g          608 t
ORIGIN      
        1 gaacgttcgt aatagaacgg cttagatcgc aggagggaaa acccgataat gcgtcccagg
       61 ttaccagaaa ctccccgtcg tatcttagga cctgttcaat ctgaatttaa attattaacg
      121 ggctcggagg gatttgaacc ctcgacctga cgcttaggag gcgtccgcgc tgtccatttt
      181 acactcattt cgaactctcg aaatgaactg cgccacgagc ccgcgatcaa agggttaatg
      241 aacgccaatt ttaacctaag taagaaatga tttaataatc tgaactaaaa ttattttaac
      301 agtttttata atgaaagctc agatatcgat tacttaagtc gtcctttgta ctatgtcttg
      361 gttcttttca gtccacttcg tgataacaat cacatcggtg agtaatcttg tctccaagtc
      421 atcttcatca gaagaaatca tgtgtaatta tttagatgat atttacacat ctacctaagt
      481 tttacccaac acccattaca aaaagaatat caagatttat ttggtgtttt ctataaactc
      541 tatctttccc tcttaccttc tataaattcc ataaatcggt ccttagcgtc tgagtaagtc
      601 atctgtactg gcggatgttt gaagcaatag gcagagatgc tctctagtgg tccgctggtg
      661 cccctgtcaa tggctaattt agttcctctg attgcatcaa tcataacccc tgcgctgttg
      721 taagcatcta ctaccttgag tttgacgtcg agttctattg gaacattgcc gaagtatttt
      781 cctctcatgt taatgtaaca tattttgtca ttgtccagga agcctacgaa gtctgatgga
      841 cctatgcgca taggtatcgg gtatggtacc atggctgcca ctgcacttgt cttgcttatc
      901 ctcttatcct cgagacgttc ttcatcaagc atattgtaaa agtccatatc acctcctacg
      961 ttaagctggt atgtctcgtc tatctttaca cctctatcta caaagagttt taccaaagtt
     1021 ttgtgtaaaa ctgtagctcc cagctgactc attacgtcat cgccagcaca ggccaagttc
     1081 tttcctgcaa atgcctgctg ccattttggt gtcgaagcga taaagactgg tattgcgttt
     1141 ataaaagata cacctgcatc aagacattgt tcaacatagt actttgtggc ctgtctgctt
     1201 cccacaggaa gatagtttat gaggatctca gctccagagt cctttagtat ttgagctata
     1261 tttggagggc tcttgtcaga tatcttcacc cgttcgttta gatgttttcc tacaccgtct
     1321 aatacttcgc ctttctctac cgtgatgcct gtcttattta catcacttat cttgatggtg
     1381 ttgttaggac ttgcaaatat cgcgtctgct aaatcccgac caaccttgga ttctacaaca
     1441 tcaaatgctg caacaaattc tatatccgag ggttcgattc ctccaaggtt gtaagcaata
     1501 aggcctgggg gggcaagatg agatccacta gtactagtac tatcgttact gctgctaata
     1561 ttactacgcg tactactatt attattattg ttattattat tattattgtc attttcatta
     1621 ccttttttgc gatcatcgga actatgataa cgatgataat atgatgtacc ttgaaccaaa
     1681 gcagatgcac aattgccaac accagctata gcaaccctta cctttttgct catggaagat
     1741 cgtaattcgc cggtttaatt aatatattga taatgatgcg aaggaagaga cgaatctaca
     1801 atcaacgaac taatcactat caacgaataa atcacagaat tgggacattt atcttacgct
     1861 ttttatctag ataactgc
//
LOCUS       DATLQL010000429         1253 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2594369, whole genome shotgun sequence.
ACCESSION   DATLQL010000429 DATLQL010000000
VERSION     DATLQL010000429.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1253)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1253)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1253
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2594369"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(143..403)
                     /locus_tag="VNB68_04480"
     CDS             complement(143..403)
                     /locus_tag="VNB68_04480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36639.1"
                     /translation="MIIYLVSFPPVFATVPPQPAQTESQESTAISSLIATTNFHINQT
                     IQAIQNDNSSEALRLLSELRSDISNINGNVTNLIFSAAAQPP"
BASE COUNT          430 a          214 c          242 g          367 t
ORIGIN      
        1 tagatcacga tttcaggttt tactatagga tgagttcttt ttcaacaatg tccaatgact
       61 tattctttta agtcttgatc agttgctaaa tcatcaatac tctatggata acctacaaga
      121 gatgcagact ttccgataag ctctaaggtg gctgagcagc tgctgaaaag attaagtttg
      181 tcacattacc attaatgtta gatatatcag aacgtaactc ggataaaagt cgtaacgctt
      241 cagatgaatt atcattttgt attgcttgaa ttgtctgatt tatatgaaaa ttcgtagtag
      301 cgatcaacga tgatatcgct gtactttctt gtgattcagt ttgggctggt tggggaggca
      361 cagtagcaaa aactggtgga aaggacacca gatagattat caagcagatc atcgcaagaa
      421 gaaatttact ttgtactatc aatcctaaaa gttgtgggag ctggggagca atataaagcc
      481 acctgattca agaacatgtt tacaagataa cttggaaaaa tatctagtat cgtatactag
      541 gctatataga agtcgatgac cacatactca atagaatcta tcatgactat agaaaggagt
      601 tcttcccaag gttattacat aatccacacg atacacccga ggataagcgg aaaataagtg
      661 aattgttaaa gaagccatgg aatccataca ttagaagaca tagcgcttta actcagaaat
      721 ctaggatttt aaaagaatat accttaagac aatttggagt agccttcctt aaacaaattg
      781 gacaattgtt cagccatgcg ggtcaagtgc tggttcgaat tggaaactcg ttaaagcatg
      841 tatttaaaaa atcccaataa ttcgcctcac aaactcacaa agccactatc aaggagaaag
      901 aaggaattgt acattagttg ggcaggttat aatagaaacg atcatagttc tggtattcca
      961 ttaaattcct aagcatctct tgtgagacca ttccgtttgc aaagaacaaa agtctacaat
     1021 tatcacatct caacataaga cgaagtgtct ttgtctgttt gatttctgct gctcccttac
     1081 agagaatgca gtgaactcag aattggtggg ggaatttgaa aaaaggccat gattatctaa
     1141 ttctagttac actaacctag ctatatatat agcccccaat tttgcaagaa aaattgagct
     1201 gtatttcatg agatgtataa aatgcagata tctatcgata gaagtaaggg acg
//
LOCUS       DATLQL010000430         2204 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_465978, whole genome shotgun sequence.
ACCESSION   DATLQL010000430 DATLQL010000000
VERSION     DATLQL010000430.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2204)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2204)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2204
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_465978"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..695)
                     /locus_tag="VNB68_04485"
     CDS             complement(<1..695)
                     /locus_tag="VNB68_04485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-8X methylmutase"
                     /protein_id="HVD36640.1"
                     /translation="MRERQNQTLFDTDDLKTRSQSREMSEKSLGIEEQSMRIIDSEVG
                     THKYNYLEWSIVRRVIHATADFDFAKSNGIIFSLNAIESAFQAFQKKQNIVTDVEMVL
                     SGINKRSLGRIGIKALCNLSNEQVIEKAKTSEKTRSALAMRYSLPAISDGIVAIGNAP
                     TALYEIISMIREDLIMPALIIGIPVGFVSAVESKAELVNTKCEYITNLGRKGGTPAVS
                     SIVNALMLLYIDE"
     gene            complement(664..1056)
                     /locus_tag="VNB68_04490"
     CDS             complement(664..1056)
                     /locus_tag="VNB68_04490"
                     /inference="COORDINATES: protein motif:HMM:NF014016.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CbiX/SirB N-terminal domain-containing protein"
                     /protein_id="HVD36641.1"
                     /translation="MNISSLNADCDILVIGHGSSDKGARTAFEFTVNGIMPLYKSVNF
                     CFLELDKPNIEEGVRNIVSKGTGLLIVVPYFLHRGAHTKKDVRDDLYSALEKYRLKKA
                     HLTEHLGADLKMVNLILERAREAESNIV"
     gene            complement(1111..1407)
                     /locus_tag="VNB68_04495"
     CDS             complement(1111..1407)
                     /locus_tag="VNB68_04495"
                     /inference="COORDINATES: protein motif:HMM:NF014016.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CbiX/SirB N-terminal domain-containing protein"
                     /protein_id="HVD36642.1"
                     /translation="MLIIDRGSREPEVKEELGAICELVKKKGGYDFTDYCFLEVLPPF
                     IEEGIKRCISENVDTITVMPYFLYPGMKLKESVKKCARLCHEMGIKVIFTKPLS"
     gene            complement(1425..>2204)
                     /locus_tag="VNB68_04500"
     CDS             complement(1425..>2204)
                     /locus_tag="VNB68_04500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin biosynthesis protein"
                     /protein_id="HVD36643.1"
                     /translation="GNFVISALSGHLGGANALSRKVADLLNAKAVITTAADVNETIAV
                     DLLGREFNWTIENFENVTKVSAYVVNEDRVGIFQDSGEKDWWKGSKLPANITPVGTME
                     DLRTPEFKACLIISDRLVPYMELIEKSVIYRPKSLVVGVGFHRDTSAEDIRKGMEEVF
                     KEKGLALDSVRNISSLNKNDPDGGLKKFSEMFKIPLELYDKTLLAKVTVPNPSQVVKK
                     FEGIPSVSEAAAILSSGGDLIIPKHKFPPNLTLAVAKINFG"
BASE COUNT          589 a          513 c          373 g          729 t
ORIGIN      
        1 aattcatcta tgtaaagcag catcagcgca ttaactatcg aagaaaccgc aggagtcccg
       61 cctttccttc ctaaatttgt gatatattca cattttgtgt ttacaagttc agctttcgac
      121 tctactgcgg aaacaaaccc gacaggtata ccaattatga gggccggcat aattaggtcc
      181 tctcttatca tgctaataat ttcgtataat gctgttggcg cattccctat ggccacaata
      241 ccatcgctta ttgcaggtag agagtaccgc attgccaatg ctgaacgtgt cttctcagat
      301 gttttggcct tttctatgac ctgctcatta gataaattac atagagcctt aattcctatc
      361 cttcccaagg atctcttgtt gatgcctgaa agtaccatct ccacgtcggt tacaatattt
      421 tgcttttttt ggaatgcttg aaatgcggat tcaatcgcat ttagtgagaa aattatacca
      481 ttggattttg caaaatcaaa gtctgcagtg gcatgtataa ctctcctgac gatggaccat
      541 tcgaggtaat tgtacttatg agttccaact tcggaatcga ttattctcat actttgttct
      601 tcaattccca atgatttttc cgacatttcc ctcgactgtg agcgagtttt caagtcgtca
      661 gtgtcaaaca atgtttgatt ctgcctctct cgcacgttca agtataagat tcaccatctt
      721 taaatctgct ccaagatgct ccgtgaggtg tgccttttta agacgatatt tctcaagtgc
      781 ggagtacagg tcgtccctaa catctttctt tgtgtgcgct cctctatgaa gaaaataggg
      841 aacgacaatt aagagtcctg ttcccttgct aacgatattt cttacgccct cttctatatt
      901 cggcttatct aattccagaa aacaaaaatt gacactcttg tacaatggca ttattccatt
      961 cacagtaaat tcgaatgcag ttcttgctcc tttatcgctg ctgccatgtc ctatgacaag
     1021 aatgtcgcag tccgcattta gcgatgaaat attcatatta gacttgagat cctctatcca
     1081 ttcaaccaac aaattttgaa gtatggagtg ctaactcagt ggttttgtga agatgacctt
     1141 aattcccatc tcatgacaca atcttgcaca tttttttact gattctttaa gtttcattcc
     1201 gggatacaag aaataaggca ttacagtgat ggtatcaaca ttctccgaaa tgcatcgttt
     1261 gattccttct tcaataaatg gaggcagtac ttcaagaaag caataatccg taaaatcata
     1321 cccgcctttt ttctttacca actcgcaaat cgcgcccagc tcttctttca cttcaggttc
     1381 tctgctgcct cgatcaatta tcaacattgc tcttttcaaa atcatcaccc aaagtttatt
     1441 ttagcaacag ccagtgtaag attgggagga aatttgtgct tcggaataat tagatctccc
     1501 cctgaactta gaattgccgc tgcttctgaa acacttggaa tcccctcaaa tttcttaacc
     1561 acttgtgaag gattcggtac tgttaccttt gcgagtaaag tcttatcata caactctagg
     1621 ggtatcttaa acatttctga aaatttcttc agtccgccat caggatcatt tttatttagt
     1681 gaagaaatgt tcctcacaga gtcgagcgca agtcccttct ccttgaatac ctcttccatt
     1741 cccttcctga tgtcttcggc cgaagtgtcc ctatgaaatc caactccaac gaccaaactt
     1801 tttggtctat atatgactga tttttcaatt aattccatat atggtactaa tcggtccgaa
     1861 attattagac aggctttgaa ttctggcgtc ctgagatctt ccatcgttcc aacaggtgtg
     1921 atgttggcag gtaatttaga acctttccac caatctttct cccctgaatc ttgaaaaatt
     1981 cccactctgt cctcgtttac aacgtatgca ctaactttgg taacattttc aaaattttcg
     2041 attgtccagt taaactccct tccaagaaga tcgaccgcaa tggtctcatt aacatcagcg
     2101 gctgttgtaa tgactgcttt tgcgtttagt aaatctgcta cttttctaga taaggcattg
     2161 gccccgccca agtgtcctga caatgcgctt attacaaaat tacc
//
LOCUS       DATLQL010000431         1327 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1705778, whole genome shotgun sequence.
ACCESSION   DATLQL010000431 DATLQL010000000
VERSION     DATLQL010000431.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1327)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1327)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1327
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1705778"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            39..>1327
                     /locus_tag="VNB68_04505"
     CDS             39..>1327
                     /locus_tag="VNB68_04505"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HVD36644.1"
                     /translation="MFSDQSLGETKQQQLSEKAAEGGVESTTMKHIMTNSQQSFNSQD
                     IKLPTSTQQKTDLGTEAKNKNNWVTVNHDIYGTRSSNQTIINKDNVGKLQVKWRLVNE
                     FEIQDPPIIVDNRGYVQDYAGNILAFDTRTGHVIWKVHAGNGPTTGLAFGDGVLFAST
                     ASNATILAINSTDGKTIWQSQALGNPKAGYRIDAAPIVWKDYIIAGSAGGSLPPGTGF
                     VKGNITALNRTSGEIIWSLDTTTGEWVKPGKTPPNGGAAAWSGGSLDPETGIVYIPLG
                     NPSPNFNASTRQTLNLYSNHMVAVNITNGKMIWATPFVADGTVLNVRVPDTHDWDTSW
                     GSSISKVTFDNGTQKKIVIGHDKMGNVIAMDAATGKEIWWKTLGKQYNIDAIPSPTGS
                     GMVWSYGVDGFHAVDNSNNTLYIAATNRGLNYFTDGG"
BASE COUNT          464 a          223 c          289 g          351 t
ORIGIN      
        1 tttcaaatat tttcaatatt accttagtgc caacgaatgt gttttcagat caatctcttg
       61 gagaaacgaa acaacaacaa ctatcagaaa aagcagcaga gggaggagta gaatcaacta
      121 caatgaaaca tataatgact aattctcaac aatcattcaa ttcgcaagac atcaaattac
      181 caacgtctac gcagcagaaa actgatcttg gtactgaggc aaaaaacaag aataactggg
      241 tcactgttaa tcatgatata tatggtacta gaagtagcaa tcaaacgata attaataagg
      301 ataatgtagg caaacttcaa gttaaatggc gattagttaa tgaatttgag atacaagatc
      361 cacccataat tgtagataat agaggatatg tacaggacta tgctggaaat attttggctt
      421 tcgatactag gacaggacat gtcatatgga aggttcatgc tggaaatgga ccaacaaccg
      481 gtctggcttt tggtgatggg gtattatttg caagtactgc atctaatgcc accattctag
      541 ctattaattc tacagatggt aaaacaatat ggcaatcaca agctttgggc aatcctaaag
      601 ctggttatag gattgatgct gctcccattg tatggaagga ttatataatt gcaggttcag
      661 caggtggcag tctgcctcca ggtacaggat tcgtaaaagg aaatattact gctctcaatc
      721 gtactagtgg tgaaataata tggagtctgg acactactac tggagaatgg gttaaaccag
      781 gtaaaactcc acctaatgga ggtgcagcag cttggtctgg cggttcgttg gatccagaga
      841 caggtattgt atacatacca ttaggaaacc catcaccaaa ctttaatgca agtacgagac
      901 aaacactcaa tctttattca aaccatatgg tagctgtcaa tattactaat ggaaaaatga
      961 tatgggctac gccatttgta gccgatggaa cagttttgaa tgtaagagta cctgatacac
     1021 atgactggga tacgtcatgg ggaagcagta ttagtaaagt tacatttgac aatgggacac
     1081 aaaaaaagat agtcataggt catgataaaa tgggaaacgt catcgcaatg gacgcagcta
     1141 caggaaaaga gatatggtgg aagacgctag gaaagcaata caatatagat gcaattccat
     1201 cacctactgg cagtggcatg gtatggtctt atggagtaga tgggtttcat gcagtagata
     1261 atagcaataa cactctttat attgcagcca caaatagagg tttgaattat tttacagacg
     1321 gtggaat
//
LOCUS       DATLQL010000432         1488 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2421788, whole genome shotgun sequence.
ACCESSION   DATLQL010000432 DATLQL010000000
VERSION     DATLQL010000432.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1488)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1488)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1488
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2421788"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..964
                     /locus_tag="VNB68_04510"
     CDS             <1..964
                     /locus_tag="VNB68_04510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36645.1"
                     /translation="TIYQYFLFYQCVVASSINTYKEDLFYSIVLVLALEHDLLRIIFS
                     MIKYKTALTFTGMIGAGNNNNKLYKNIHNNKARLKGISLSIHNVERNWYFGLLAATLI
                     LSVAISAEFSSASSKAYAEEDQIYKTQMLHKPMLITSIGAVEQQGTQQPTNNQTEMQQ
                     SPSPQNATIHAFEDAFIGIVNDTRNLSFAYEDEFAKLQSGVYDNQTFVTVTDLYLQMY
                     QQLLARAGTLNQSAASLPQNYSKAIDLYSESIRTDMESHEHHPNYYSTGDLAENEKSS
                     QLLSESLKFELEAFNAFRSVANDTTTSHNNTDNISNATAAILGV"
     gene            1260..1406
                     /locus_tag="VNB68_04515"
     CDS             1260..1406
                     /locus_tag="VNB68_04515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="SHOCT domain-containing protein"
                     /protein_id="HVD36646.1"
                     /translation="MHAQSAQVPSQGKKDPYQELERLGSPMQQGLITEEEFQKLKMRL
                     LSGV"
BASE COUNT          515 a          285 c          283 g          405 t
ORIGIN      
        1 aacaatatat cagtatttct tgttttacca atgtgtagtg gcctcatcaa tcaataccta
       61 taaggaagac ttgttctaca gcattgttct agtattggct cttgagcatg atcttctaag
      121 gattattttc agcatgatta aatataagac agccttgacg tttacaggaa tgattggggc
      181 agggaataat aataataagc tctataagaa tatccataac aataaagccc gactaaaagg
      241 tattagtcta agtatacata atgttgaaag aaattggtat tttggactgt tagctgccac
      301 gctgatactg tccgtagcaa tatcggcaga atttagtagt gcaagttcta aagcctatgc
      361 agaggaggac caaatttaca aaacgcaaat gctgcataag ccaatgctca ttacatctat
      421 tggtgcagtt gagcaacaag gaactcaaca gcccacaaat aatcaaacag aaatgcaaca
      481 gtctccatca cctcaaaatg ccacaattca tgcatttgaa gatgccttca tagggattgt
      541 taatgatacc cgcaatctct cctttgctta cgaagatgaa ttcgccaaat tgcagtcagg
      601 agtatatgat aatcaaacat ttgtgacggt tacagatctc tatctgcaga tgtatcaaca
      661 attgttagct agggcaggca ccctaaacca atctgcagcc tcgttacccc aaaactatag
      721 caaagctatt gatctttatt cagagtccat aaggacagat atggagagtc atgaacatca
      781 cccaaattac tattccactg gagacctagc tgaaaatgaa aaatcaagtc aacttttgtc
      841 agaatcattg aaatttgagc ttgaggcatt caatgcattt agatcggtag ccaatgatac
      901 aacaacttcc cacaataaca ccgataatat aagcaacgca acagctgcaa tacttggcgt
      961 gtagcatttc agcataaagt gcgcgggttg ttaaatcatg taggtccgct agcctagata
     1021 gttgtagcag tataccaagc gacggttatg accaattaca ctaactgtaa atgaagatta
     1081 tataccactt cgattcactg gaatccatcg aactttactt ggagcatacc gactgactaa
     1141 atgctagcaa atgatagaag aacattatgg caagataata actatactgg ttttttcgat
     1201 aatacgggaa ataaagggca cgtcaacttg tctttgtcct gttggcgcaa cacatgatta
     1261 tgcacgctca atcagcacaa gttccaagcc aaggtaagaa ggatccgtat caagaacttg
     1321 aaagattagg tagtcccatg caacaaggct tgataacaga agaagagttt cagaagctca
     1381 aaatgagatt actctcgggc gtttaagaat gggatattta gctgctgttt aaataaacat
     1441 atgagaccaa ctggaatagt agtaataata ataatgatac tattagta
//
LOCUS       DATLQL010000433         1555 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2241678, whole genome shotgun sequence.
ACCESSION   DATLQL010000433 DATLQL010000000
VERSION     DATLQL010000433.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1555)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1555)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1555
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2241678"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..439
                     /locus_tag="VNB68_04520"
     CDS             <1..439
                     /locus_tag="VNB68_04520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ammonia channel protein"
                     /protein_id="HVD36647.1"
                     /translation="NGAIAGLAGVTGASGFISVQNSLILGIVIGFISFFAIILLKERL
                     KIDDVLDVGSVHGVTGIIGTLAIGFIASTIINPAGPNGLFYGNPSQLGIEALGVAVSA
                     LLGFAGTVLIMKIINSTIGLKVKDVEESIGLDLTQHAERAYLE"
     gene            539..883
                     /locus_tag="VNB68_04525"
     CDS             539..883
                     /locus_tag="VNB68_04525"
                     /inference="COORDINATES: protein motif:HMM:NF012753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HVD36648.1"
                     /translation="MKMVEAIVRTERMNSVKESLRKISVGGMTISPVSGWSRQRELHL
                     QWRGKPISYDLIPRMKFEIAVPDDLLDSVIQAITDQARTGDDDGDGVIFVSNIEQAIN
                     ITTLDKGDKSIS"
     gene            complement(1088..>1555)
                     /locus_tag="VNB68_04530"
     CDS             complement(1088..>1555)
                     /locus_tag="VNB68_04530"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HVD36649.1"
                     /translation="SERFLTDLQEYIFHFTKKGNVKLDKLAAGVPYQDKTNIGRWKSA
                     KQDRRDRGNVWFIPYPTIQEGRPHPAVFPEKLPYLCTRLHGIKSDMLVYDPFMGIGNT
                     ALACINQGIQYIGTEIDADYIRIARENIVERKKAIARMRNERLENAKGLLQRD"
BASE COUNT          446 a          295 c          325 g          489 t
ORIGIN      
        1 caatggtgcg atagctggct tggcaggtgt aactggtgct tcaggcttca ttagcgttca
       61 gaattcattg atccttggga tagtaattgg atttatctca ttttttgcaa ttatattgtt
      121 gaaggaacgc ctcaaaatag acgatgtact tgatgttggc tcagtacacg gggttacggg
      181 cattataggt acgttagcaa taggctttat tgctagcaca attatcaatc cagcgggtcc
      241 aaatggttta ttctatggaa atccgtcaca gctaggcatc gaagctttgg gagtagcagt
      301 ctcagcactt cttggattcg caggtactgt gctaattatg aagataatta actccacaat
      361 tggcctcaag gttaaggacg tagaggaaag tatcgggtta gatctcaccc aacatgcaga
      421 aagagcatac ctggaataat gtgccctgtc cttccggatt gctgctccgt ctctgatcga
      481 tattttcatg gcttaaacta ttatatttaa gactgataga tataaccgct ggctccatat
      541 gaagatggta gaagcaattg tgagaacaga acgaatgaat agtgtaaagg aaagcctgcg
      601 aaaaatttca gttggcggga tgactatttc tccagtatca ggatggagta gacaaagaga
      661 acttcattta caatggagag gaaagcccat atcatatgac cttattcctc gaatgaaatt
      721 tgagatagcg gtaccagatg acctgcttga ttctgtgatc caggctatta cggatcaggc
      781 gcgaacagga gatgatgacg gcgacggcgt cattttcgtt tcaaacatcg aacaagcgat
      841 caatatcact acattggata aaggagataa aagtatatca taatgagata aaagaaatat
      901 ggatcgaatt aattattgct gaagacgact gagcaggtta cttatgtttc atcttttcag
      961 ctaaagtttg actagccata ttgtatcgca tattctggaa ttgtatggaa tttaactctg
     1021 aataatttca ttcattaatc gcgaggggtc ctaagtctaa tttcgaaatt ttttgcctta
     1081 ataacaatta atctctctgc aatagtcctt tggcattttc tagcctctca ttccgcattc
     1141 tggctattgc ctttttcctt tccactatat tttctctagc tatcctaata taatcagcgt
     1201 ctatctctgt accaatgtat tgtattccct gattaataca agctagtgca gtattgccta
     1261 ttcccataaa aggatcatat actagcatgt cagatttgat accatgtagc ctagtgcaaa
     1321 ggtaggggag tttttcagga aatacagcag gatgaggtcg tccttcttgg atagtagggt
     1381 aaggaataaa ccacacgttt cctctgtctc tcctatcctg tttcgcagat ttccaccttc
     1441 ctatgtttgt cttgtcttgg taaggcacgc ctgctgctag tttatcaagt ttcacgttac
     1501 ctttcttagt aaaatgaaaa atatattctt gaagatcagt cagaaatcgc tcact
//
LOCUS       DATLQL010000434         1393 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1157661, whole genome shotgun sequence.
ACCESSION   DATLQL010000434 DATLQL010000000
VERSION     DATLQL010000434.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1393)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1393)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1393
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1157661"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..923
                     /locus_tag="VNB68_04535"
     CDS             <1..923
                     /locus_tag="VNB68_04535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36650.1"
                     /translation="TNPYTSSITNDSLDSKQRLSKSIDVKGAITLSIAIISFLITLQL
                     LQKAGLNNLIQIVIFSIAALVSIFLFIVVEKKAPFPLIDFKLLANKVILPANIINMTV
                     GLTALMVVYQSLPILIRSPPPVGFGGDASSIANVQLPYMAISLIFSVASGFVVSKFGN
                     LRPTTIGTIITTVGFFILFLFHSTQASIAAVLILIAVGLELMQIGSVNIVLTSTPIQF
                     SGISLGMNLLIYLIGSSVGPVIAGIYMQANQVFVKSGGMSASFPSPESFNLIFLTAAL
                     ISVSSIVFAILLNRNMRNRSGDGKEIGVSI"
BASE COUNT          422 a          257 c          274 g          440 t
ORIGIN      
        1 atacgaaccc atacaccagt agtattacta acgatagcct tgatagcaaa cagagattaa
       61 gcaagagcat agacgtaaaa ggtgccataa ccctgtcgat tgcaataatt tcatttctta
      121 ttacacttca acttttgcag aaggcaggtt tgaataattt gatacaaatt gtcatttttt
      181 caatcgcagc actggtctca atatttctat tcatagtagt agagaagaag gcaccatttc
      241 cattgattga ctttaagttg ctggcaaata aggtcatact tcctgcaaat ataattaaca
      301 tgactgtagg cctcactgcg ctaatggttg tttaccagag tcttcctatt ttgatacgaa
      361 gcccgccgcc tgtaggattt ggtggcgacg catcgagtat agcaaatgtt caacttccct
      421 atatggcaat atctttgata ttctctgttg cttccggttt tgtagtttcc aaatttggaa
      481 atctaagacc aaccacaata ggaacaatca ttactacagt aggctttttt attcttttct
      541 tgtttcattc aacacaagcc tcaatagctg cagttcttat cttgatagcc gttggattag
      601 aattaatgca gattggatca gtgaatatcg tgctgacttc aactccgata caattcagcg
      661 gaatatcgtt gggaatgaat cttctaatat accttatagg atcctcggtg ggacctgtga
      721 ttgcaggaat atatatgcaa gcaaatcagg tatttgtaaa atcaggaggt atgtcggcct
      781 cattcccatc cccagaatca tttaatctaa tttttcttac tgctgcctta atttcagtgt
      841 catctattgt atttgcaatt cttctaaata gaaatatgag gaaccggagt ggagatggca
      901 aagaaatagg tgtctcaatc tgatgaaaac tctaaaaata acatatcaat ttgccatttc
      961 agatacacta tattattccg ctatggtact cggctgttgc atttaggatt aaatcggcaa
     1021 tattatctgg tgttatacaa gtgatgcatg gcgagaggta agtgagatgg tagtagcatt
     1081 caatttgttt gcgaaaagac gttgcacatc aggcggaatc agatggtcgt tctcagaaat
     1141 ctgatttcat gtcggtagtt acttccaagc tggagagcca gatttttcag caagaattga
     1201 ctgattaatt ggcttctgca caaccgccat gatgtcagct tctgtaggat caacatctag
     1261 agcgaaggct taagggaaca tgactgggtt tatgtaaaca aatcctcagg tatcggaaat
     1321 caaaaaatct tttggcaact ttgctacatc gaatcaagta gaaggtttag aaaatagtag
     1381 ttccaattta atg
//
LOCUS       DATLQL010000435         3330 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_109265, whole genome shotgun sequence.
ACCESSION   DATLQL010000435 DATLQL010000000
VERSION     DATLQL010000435.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3330)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3330)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3330
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_109265"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..217)
                     /locus_tag="VNB68_04540"
     CDS             complement(<1..217)
                     /locus_tag="VNB68_04540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36651.1"
                     /translation="MERSEESKNMDSNRDSETMDLSFVTDLLVKEVQIPPLQQIPPDT
                     YKTIAKFIRTESLRSYESIESKIRDELI"
     gene            375..1841
                     /gene="glnA"
                     /locus_tag="VNB68_04545"
     CDS             375..1841
                     /gene="glnA"
                     /locus_tag="VNB68_04545"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HVD36652.1"
                     /translation="MPYRVVDGRIESLSYTNQEVLQRLEGDGIKFLDLQFTGLFGRFH
                     HTTIASNMFRKEDFEDGLPKLDGSSIKGFTEIHESDLIIRPDSSTYAIVPWIREYPTA
                     RLICDILSGGKTRGPYPKDPRGIAKKAEKYVKEQGYDISYWGPEVEFFVFDKLAVDTL
                     TPSHGQSYEITSREAPWSTDNVGYALRLKEGYLPSAPGDTLMQYRNECVDVLSSKFGI
                     ICDAHHHEVATAGQCEIDIRYDSLVNAADSVQSYKYIVKNIAKEHNMIATMMPKPISL
                     DNGSGMHVNVSLWNGGRNLFYDASDEYAEMSENARYFGGGIIDHAKALAAIVAPTTNS
                     YRRLVPGYEAPVYIAWSTGNRSAIIRIPAHYKGKKFANMKRIEFRAPDPSCNPYLAFS
                     AIVAAGLDGIKKKKSIGDPVDADIFKMTEYRRQELGIQQLPASLREACQELQNDSIFL
                     EPIFGKEVIASIVEHAKNEHMELAIRPHPHEFAMYADV"
     gene            complement(2053..2127)
                     /locus_tag="VNB68_04550"
     tRNA            complement(2053..2127)
                     /locus_tag="VNB68_04550"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2090..2092),aa:Val,seq:tac)
     gene            2291..2833
                     /locus_tag="VNB68_04555"
     CDS             2291..2833
                     /locus_tag="VNB68_04555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HVD36653.1"
                     /translation="MSFNVDALGGLAEKLKQLVNETQEHYEALVEDSQLYKKGKISER
                     EFFGKIGDYLISSSALNFLAVRVILELKSAMAKGSSIQSPTGASGATASSSYAPSGSG
                     GGFGIAGFIGGEGKSSPADQYIMPETEQSAPTFKPVDMTIKRDRTNQENSNTRTKNCT
                     TCGAQIPNQSKFCNKCGNTQ"
     gene            2863..3261
                     /locus_tag="VNB68_04560"
     CDS             2863..3261
                     /locus_tag="VNB68_04560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HVD36654.1"
                     /translation="MKIFNGRAATEEYMSTHSLTFSTPEMTLKKFALWLGDQVTLKGN
                     NDQVPRLMVFLKELNDDKSDKTEFMPDIDDSFKPSGAVTEMYSKGSQNTRNALPAAQP
                     ETISKSCIQCTHLLKIDSRFCPKCGSKQTP"
BASE COUNT         1067 a          617 c          700 g          946 t
ORIGIN      
        1 gaatcaattc atctcttatc tttgattcta tgctctcata gcttcgtagc gactctgtcc
       61 ttatgaactt ggcaattgtc ttatacgtat ccgggggtat ctgctgcaaa ggtggaattt
      121 gaacctcctt cacaaggaga tctgtcacaa aactcaaatc cattgtctct gaatctctgt
      181 tgctatccat gttcttgctc tcttctgatc tttccactag ttatcgactc gtttattgta
      241 tagactgaaa cttaatactg ttaagcttta taagatatta cttttttatc agctattcta
      301 ctaatctctt ctgtatacga ggaatttatt ttaagactta attataggac tatgataaag
      361 aaagaagatt ccagttgcct tatagagttg ttgatggaag aatcgaatct ttatcttaca
      421 caaatcaaga agtattacag agacttgaag gcgatggaat aaaattccta gatctacaat
      481 ttactggtct attcggaaga tttcatcata ctaccatagc ctcgaatatg tttagaaagg
      541 aggattttga agatggatta cctaaacttg atgggtcttc gattaagggt ttcacggaaa
      601 tccatgaatc agacttaata attcgtcccg actcctctac gtatgctatt gttccatgga
      661 tacgggaata tcccacagcg agactgatat gtgacatttt aagtggagga aagacgaggg
      721 gaccatatcc aaaggatccc cggggtattg caaaaaaagc cgaaaaatat gtaaaagaac
      781 aaggctatga tatttcttat tggggtcctg aagtagagtt ttttgtattt gataaactcg
      841 ctgtagatac attaactccg tcacacggtc aaagttatga aataacatca agagaagctc
      901 cttggtcaac tgataatgtt gggtatgcgt taagattgaa ggaaggctat ttacctagcg
      961 caccaggtga cacactgatg caatatcgta atgaatgcgt ggatgtttta agtagcaaat
     1021 tcggtataat ttgtgatgca catcatcatg aagttgcaac tgctggccag tgcgagatag
     1081 atattcgata cgatagctta gttaacgcag cagattctgt acaaagttac aaatacatcg
     1141 tcaagaatat agcgaaagaa cataatatga tagcaacaat gatgccaaaa ccaatttcct
     1201 tggataatgg ctcaggaatg cacgtaaacg tgagcttgtg gaatggaggg cgtaatctgt
     1261 tctatgacgc atcagatgag tatgctgaaa tgtctgagaa tgcccgctat tttggtggtg
     1321 gcattataga tcatgcaaaa gccttagcag caatagtggc tccaactacg aattcataca
     1381 gaagattagt tcctggatat gaagcccccg tttacattgc atggagtacg ggaaataggt
     1441 ctgccataat aagaattcct gctcattata aagggaaaaa gtttgcaaac atgaagcgga
     1501 ttgaattcag agctcccgat ccatcctgta atccttatct agccttttcg gctatcgtag
     1561 cggcaggact tgatggcata aagaagaaaa aatctatagg tgatccggtt gatgcggata
     1621 tcttcaagat gacagaatac aggaggcaag agcttggcat ccagcagctt cctgcaagtt
     1681 taagagaagc atgtcaagaa ttacagaacg attcaatttt tctggaacca atatttggta
     1741 aggaagtgat cgccagtatt gttgagcatg caaagaatga gcatatggaa ttggccataa
     1801 gaccacatcc acatgaattt gcaatgtacg ctgatgtttg atgagtaata caggaacata
     1861 atcagattac tgggctatgt atgattgtga gtataaaaaa taggtagcgg ttaggttaaa
     1921 atgcaagcgg caagcaaaaa ttgatcacgg gctgtcaaat acttcgtaag ttagtttcaa
     1981 caatttgtta atacccctgt taccttttat ctattgaatg gaatggactc aataatcatc
     2041 atctcaaaag aatggagggg atgggatttg aacccatgac cacctgcgtg taaggcaggt
     2101 atcctaacca ggctagacaa cccctccagt ctgattgacg tcacatccaa catatcgata
     2161 ttaataggtt ttttgattcg aaaatgagtg tttccaaaga aagtaattac atcgactcat
     2221 gctaggttta gctgccgtgg ataatcttcg ttcaaacttt tattagaccc gtaagacaga
     2281 atcagtattg atgtcattta atgtagatgc cttgggcgga ttggcagaaa agttaaaaca
     2341 attggtcaac gaaactcaag agcattatga ggcattggtc gaggatagtc aactctacaa
     2401 aaaaggaaag attagtgaaa gggaattctt tggcaagata ggcgattacc ttatttcatc
     2461 atctgcatta aatttcttag cagtaagagt cattctggaa ttgaaatcag cgatggcaaa
     2521 aggctcatca attcaaagtc ctactggtgc tagtggtgct actgcttcgt cctcatacgc
     2581 tccatctggg tccggcggtg gttttggcat tgcaggattt atagggggtg agggtaagtc
     2641 ttcaccagcc gaccagtata ttatgcccga aactgaacaa agtgcaccca cattcaaacc
     2701 cgtagatatg acgatcaaac gggatcggac aaaccaagag aatagcaaca cacgaacaaa
     2761 gaattgcacg acatgtggag ctcaaatccc aaatcaatca aagttttgca ataaatgtgg
     2821 aaatacgcaa taattaaaac tgcggactac atataaccct taatgaagat ctttaatgga
     2881 agagctgcta cagaagaata catgtcaact cactctctca cgttttctac ccctgagatg
     2941 acgttgaaga agtttgcgct ttggttaggt gaccaagtca ccctgaaagg gaataacgat
     3001 caggttccac gattgatggt attccttaag gaattgaatg atgataaatc tgacaagact
     3061 gaatttatgc ccgatatcga tgattcgttt aaacctagcg gcgcagtgac agaaatgtat
     3121 agtaagggat cacagaatac tcgtaatgct ttaccagctg cacaaccgga aaccatttcc
     3181 aaatcttgta tccaatgcac tcatctcctg aaaatagact ccagattttg tcctaaatgt
     3241 ggatcaaaac agacaccgta aactgattat tctttctggc cctttgattc tgaaataagc
     3301 ataaaacatt cgttacaaat cgtggatgaa
//
LOCUS       DATLQL010000436         1115 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1157805, whole genome shotgun sequence.
ACCESSION   DATLQL010000436 DATLQL010000000
VERSION     DATLQL010000436.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1115)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1115)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1115
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1157805"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(277..462)
                     /locus_tag="VNB68_04565"
     CDS             complement(277..462)
                     /locus_tag="VNB68_04565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36655.1"
                     /translation="MLEKTLKSIEPFTSNTEKNSRFCIGCGELATKIVKYSTEGAVIL
                     EKYCDKCAKVIEDSSPK"
     gene            complement(546..878)
                     /locus_tag="VNB68_04570"
     CDS             complement(546..878)
                     /locus_tag="VNB68_04570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36656.1"
                     /translation="MKKEFILSKIEAVHDGSPYVYVGFVDPNDSKSGEARQQNPFGPK
                     AMAFTSPEDLMKNLPKAMGNITGMMGGGGLGDSLTFKLSMREYEDIGLKVGDKVSIEI
                     KKKQDVGI"
BASE COUNT          295 a          232 c          186 g          402 t
ORIGIN      
        1 tgctggttac acgttgaaca tgtgtggtat tcttcatgtt tactacatct ttcacacact
       61 gtcatttctt agaagcatca tgcaagacat cattatgaag ccattgtcat gaattaaaat
      121 attcatgagt gggattcgaa cccataaggt atacttgggg attcatacaa ttaaatttat
      181 tttatagaat ttctccggtt ggtaccacta tgctttaatt ctcttctaat tggcacttat
      241 tatgatataa ctacctgtga ctaactttaa ctggcattac tttggcgaac tatcttcaat
      301 tactttggca catttatcac aatatttctc taatattacc gctccttcgg tactgtactt
      361 gactatcttg gttgcaagtt ctccgcatcc tatacagaat cttgaattct tttctgtgtt
      421 tgatgtaaag ggctcaatac tttttagtgt cttttctaac aatcacatct tctctaatta
      481 tgtagaaaga atgtacataa taaactagat aaaacgtcac tggtcagtcc gtttaaaaat
      541 tcagattaaa taccaacatc ttgctttttc ttaatttcta ttgatacctt gtcaccgact
      601 ttcagaccga tgtcttcata ctctctcata cttaacttga atgtgagaga atcgccaaga
      661 ccacccccgc ccatcatccc tgtaatattt cccatggctt tgggcaaatt tttcatcaaa
      721 tcttctggag aagtgaatgc catcgcctta ggtccaaaag gattctgctg ccgcgcttct
      781 ccggatttgg aatcgttggg gtcaacaaat cctacgtaaa cgtaaggact tccgtcgtgt
      841 accgcttcaa tctttgaaag aataaattcc tttttcattt ataagcaaga attaatacgg
      901 ctcttttata ttttttagaa tagcactagt ttctgagtgc tagtactctt gctttcagac
      961 ctttgatttc tcatagctag cgtccataaa gaccaatcga ggtttcgcgc tcgtatgatt
     1021 gtctagtttg gtcatcctta gctttatttg aagttaggcc tctagcttgg agtttcacgc
     1081 gtcagtgtag tgtacgtcta tgtaggtgtt cgtac
//
LOCUS       DATLQL010000437         1282 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2241971, whole genome shotgun sequence.
ACCESSION   DATLQL010000437 DATLQL010000000
VERSION     DATLQL010000437.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1282)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1282)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1282
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2241971"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            119..628
                     /locus_tag="VNB68_04575"
     CDS             119..628
                     /locus_tag="VNB68_04575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36657.1"
                     /translation="MTDTTNKAKETTTTTSTIAQDSSEIFDTYKQGVLKVTEEVSKFQ
                     PQYAQSISNLQQEYIQLTKEFVNKVFAAQRNWAGSNVTSTSTTFPTSTYAPYAEQFRR
                     QSNEITAQALSVFDTSNQLAINAINAARENVKLYGKAIDAVTEFNNNVANAWSSFFTS
                     AQRQQYFRQ"
     gene            complement(776..>1282)
                     /locus_tag="VNB68_04580"
     CDS             complement(776..>1282)
                     /locus_tag="VNB68_04580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36658.1"
                     /translation="HWKVINHTRLILDNVPRINQTLLFSTMSALLPLLAACILLTNTF
                     SLATAQSLVPGIHGMSIVQGVKFTWVIISSDNEISVNLRYLGNSTGNGTTPAVTLVAT
                     ALTNPVQVSQTNGDRNTSNAQTTMGGSQILNAGWQSPSSVTIKIEGNSSLYNADLVTV
                     VASPYTGG"
BASE COUNT          446 a          257 c          222 g          357 t
ORIGIN      
        1 caagataatg aatgaacaat taaatacagt gcaaggcatt aatggtattc aatggtaata
       61 accaccatat aatgtcaagg tttatatgtc accatacact accatataat ggttacaaat
      121 gacagacaca actaataaag ctaaagaaac aactactaca acaagcacta ttgcacaaga
      181 cagttctgaa atctttgata catacaagca aggtgtgttg aaagttactg aagaagtatc
      241 taaattccaa ccacaatatg cacaatcaat ttcaaaccta cagcaagaat acatacaact
      301 gacaaaagaa ttcgttaaca aggtatttgc agcacaaaga aattgggcag gaagcaacgt
      361 aacatctact agcacaacgt ttccaacttc tacatatgca ccatatgcag aacaatttag
      421 aagacaatct aacgaaatca ctgcacaagc attgagtgta tttgacacat caaatcaact
      481 agcaataaac gcaataaacg cagcaagaga gaatgtgaag ctatatggaa aggctatcga
      541 tgcggtaacg gaatttaata acaacgtagc caatgcatgg tcatcattct tcacatcagc
      601 acaaagacag caatacttca gacaataagg ttttctaacc ttttttaatt tttttagctt
      661 acgattaata atcccagttc tataacaaga acttacattt agtacctgga ttttattcct
      721 ctaagagtta tttatattac cagtgtggct tccccttatt tttcctgtga agatttcatc
      781 cacccgtgta aggagaagcc acaactgtca caagatcagc attgtaaagg gaagaatttc
      841 cttcgatttt tattgtgacg ctacttggag actgccagcc tgcattcaat atctgacttc
      901 ctcccatagt cgtttgagca ttcgacgtat tcctatcgcc attggtttgg gacacttgaa
      961 caggattagt caatgccgta gcgactagcg ttactgcggg tgtagtaccg tttccagtgc
     1021 tatttcccag gtacctcaga ttaactgaga tttcattatc acttgagata ataacccaag
     1081 tgaatttgac cccttgaaca atactcatcc catgaattcc agggactaga gactgagcgg
     1141 tcgctagaga aaatgtattt gtaagcaaga tgcaagcagc aagaagtggc aaaagtgcag
     1201 acatcgtact aaatagaaga gtttgattta ttcttggcac attatcgagt attaatcttg
     1261 tatgatttat cactttccaa tg
//
LOCUS       DATLQL010000438         3038 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_997758, whole genome shotgun sequence.
ACCESSION   DATLQL010000438 DATLQL010000000
VERSION     DATLQL010000438.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3038)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3038)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3038
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_997758"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..486
                     /locus_tag="VNB68_04585"
     CDS             <1..486
                     /locus_tag="VNB68_04585"
                     /inference="COORDINATES: protein motif:HMM:NF026018.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis C-terminal
                     domain-containing protein"
                     /protein_id="HVD36659.1"
                     /translation="ILSLIGSEYTSGYMILLFLSVSILPYCIVVNTISKLNNFGKSKR
                     LVLLGAVEVSTFLLAFYFLVPHYGTLGASIATLVAFIAASVPSLIWSQRTLIKHIISV
                     GIALAGGIGAVYMLSALVGLHPLAAIGISAGLTMTFLLKLKTISSHELLRIFKTLIKN
                     G"
     gene            complement(583..1905)
                     /locus_tag="VNB68_04590"
     CDS             complement(583..1905)
                     /locus_tag="VNB68_04590"
                     /inference="COORDINATES: protein motif:HMM:NF012573.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36660.1"
                     /translation="MLVAYLKTTVIVLIAVVLIIGVIVPALRLAFAQNEINNDLGNTI
                     RDNVNSLGKDLSNSIIGMVKKQMKASCEDGSSGSSQTVFSEGSGSSQSVMSSQSDGTG
                     KSIISSEGSGNGRLCGGSGDDTISGGSGDDTISAGAGNDKLFGEGGNDVLTGGPGADY
                     FDCGSGKDTIKDFNPGEGDTKSSDCEVVIKANQSGGTAKELSSSPSTQPSSSLPSVTT
                     TPTKPVVSPSKNPAKSLTPSSSPSGTSTATERATLGFNGSSINKVLVRTGGDESIAKY
                     SPATAEVAVGQDVTFYNPTKVPDPHTVTFVMDNKSAAFLFVPFAIPAATTFTALPAAG
                     SNSQPALMPNLQNGTKTIIGVNSRAIDPIVIDSAGKVKSIRQANSTSAYLSDGSEKYI
                     NSGWISPKGYEKGLPGSVTGFTISFKKPGTYNYIDTFHPSMKGTITVK"
     gene            2516..>3038
                     /locus_tag="VNB68_04595"
     CDS             2516..>3038
                     /locus_tag="VNB68_04595"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HVD36661.1"
                     /translation="MINVRLLHDHAALLIQNHEGHANSRIIKKYVVVSDLHLGFEDEL
                     CTSGILIDSDKLLDEMLNELIELIKVNTAEGIILLGDLKSKVGSISKQEWQAIPSFLK
                     SLSKHASVYFVPGNHDSNIRFLTPQDVNSITAHGMVILDTLFLHGHTMPSLAHSAIKR
                     IVMGHIHPVFFKPG"
BASE COUNT          869 a          614 c          589 g          966 t
ORIGIN      
        1 atactgtctt taataggttc agaatacaca tctgggtaca tgattttatt gtttctttct
       61 gtttcgattt tgccatattg cattgttgta aatacgattt caaaattaaa taactttgga
      121 aaatctaaaa gacttgtatt gctcggcgca gtagaggtat ctacttttct attagccttt
      181 tactttttgg tcccgcacta cgggacgcta ggagcttcca tagctacact ggttgccttc
      241 atagcagcat ccgtaccttc gctaatttgg tcgcaacgca cattaatcaa gcatataatt
      301 agtgttggaa tagcacttgc agggggtata ggagctgtat atatgctaag tgctttagtt
      361 ggtcttcatc ctcttgcggc tattgggatc tccgccggtt tgacaatgac gtttctgttg
      421 aaattgaaga ccatctcatc tcatgaatta ctgcggatat tcaagacttt aattaagaac
      481 ggatagttca aaccaattcc gccgtcggtc atgagtggca tttaaaattg agaagaagga
      541 agaaaaatga agtgaccgac agagagacta gagtgggtca gcttatttta cggtgattgt
      601 tcctttcatc gatggatgga aagtatcgat gtaattgtac gtgcctggtt tcttaaagct
      661 gattgtgaag cctgtcaccg aacccggaag tcctttttcg taacccttgg gagaaatcca
      721 ccctgaattg atgtattttt cgctgccatc actaaggtaa gctgacgtac tatttgcctg
      781 tcttattgat tttaccttcc cagcagaatc gattacgatc ggatcaatag ccctagaatt
      841 gacacctatt attgttttag tcccattctg taaattcggc atcaaggctg gctggctgtt
      901 agagccggct gctggcagag cagtaaatgt tgtggctgct ggaatagcaa agggtacaaa
      961 gagaaatgct gctgacttgt tgtccatcac aaaagtgact gtgtgcgggt ctggcacctt
     1021 agtaggattg tagaatgtca catcttgtcc cactgctact tcagcagttg caggtgaata
     1081 ttttgctata gactcatctc cacctgttct taccaaaact ttgttaatag aggagccatt
     1141 gaagccaagt gttgctctct cggtagcagt tgaagttcct gatggtgatg aacttggtgt
     1201 taaagattta gctggatttt ttgatggaga tactacaggt tttgtaggtg tagttgttac
     1261 cgatggcaat gatgatgaag gttgcgtgga aggagatgaa gagagctcct ttgccgttcc
     1321 accgctctgg tttgctttta tcacaacctc acaatcagat gacttcgtat ctccttcgcc
     1381 aggattgaaa tcttttatcg tatctttacc tgaaccgcag tcaaagtaat cagcccccgg
     1441 cccacctgtg agaacatcgt tacctccctc accaaacaat ttgtcgttcc cggctcctgc
     1501 ggatatcgtg tcgtcaccag agccaccaga tattgtatcg tcaccagagc caccgcatag
     1561 cctgccattg ccgctccctt cactagaaat aattgattta cctgtcccat cgctttggct
     1621 cgacataaca ctttggcttg atccgctacc ttcagagaag actgtttgac tcgatccgct
     1681 agatccgtct tcgcatgaag ccttcatttg tttctttacc attccaataa tactatttga
     1741 caaatcttta cctagactat tgacattatc cctgatagta ttgcctaaat cattattaat
     1801 ttcgttttga gcaaaagcta gcctcagtgc cggtactatt acgccaatga ttagtaccac
     1861 tgcaatcaat acgataactg ttgtctttaa gtaagctact aacatattct ctatgataac
     1921 tttactaata catatccatt ttgaacctta aaacactatt ttgcaattag ataaatatta
     1981 ttaaagaaaa gagtagaggc taaaggtaat atccatttta taaaaagaac ttctaggatg
     2041 agcctccagc tatcatccta gcttactctt cgtattattc tcgatttgga tcctttaact
     2101 gaaattatta aaatttgtct agtatttgtt aaaatatctt aaatataatc ataatatcaa
     2161 tgaagcctca gtaaggcaat gtataccaaa acaataatag tactaccatt cgcctatatt
     2221 gtggcttcgt tggtgccacg aacgttgttt attataacta caaacaggca aaaaaaccgt
     2281 tgaatccaag taataagtgg gggatatctt tgataacatc tttttttatc gatgctactg
     2341 aggagagtaa aaaaaatatc atatagtctg tagaaagctc acccaattga gctaaatgaa
     2401 gtcaggatgt catcaggatt gacaaaacct atagatacta ttttcctttt ttttagcctt
     2461 ggctgacaaa ggattgtatt atacaaatta ggggagtgcg tgctatatac ctgccgtgat
     2521 aaatgtccgt cttctacatg atcatgctgc tttactgata cagaatcatg aaggtcatgc
     2581 caattcaaga atcatcaaaa aatacgttgt ggtgtccgat ctacatctcg gctttgagga
     2641 cgagctatgc acaagcggaa tattgattga ttctgataaa cttcttgatg aaatgttaaa
     2701 cgaactgata gaacttatta aagtcaatac cgcagaagga ataattctac ttggagactt
     2761 aaaaagcaaa gtaggttcta ttagtaaaca ggaatggcaa gcgatacctt cgtttctcaa
     2821 atcactatct aaacatgcaa gcgtttattt tgttcccggc aaccatgata gcaatataag
     2881 gttcttaact cctcaagatg ttaattctat tactgctcat ggaatggtta tacttgatac
     2941 attgtttctg cacggtcaca ctatgccctc cttggcacac tcagctataa aacgaattgt
     3001 aatgggccat attcatccag tcttctttaa acctggaa
//
LOCUS       DATLQL010000439         1043 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1352527, whole genome shotgun sequence.
ACCESSION   DATLQL010000439 DATLQL010000000
VERSION     DATLQL010000439.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1043)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1043)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1043
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1352527"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
BASE COUNT          305 a          180 c          231 g          327 t
ORIGIN      
        1 atcgtattta tttgatcaaa tattgcccta aatcgttcct tttgtcattt taggtacttt
       61 ggagaagaaa tctggaaaag gaagcatttt ggacgttttt ggagcataaa agtgaagaaa
      121 acgacaaagt ctcaaaatcg gctggaaaag tacctttgac ggcgtcaggg attgttcctg
      181 acggcgtcat ggcttggcaa aaaaggtgga tatgaaaaat acacatgata agccagagaa
      241 ttttacaatg gaaaatctga cggcgtcacc ctttaagatg atcaaggcca tcacggttta
      301 agttaaagag agacggcgtc aagctcattt ctgacggcgt caacctttga taggccagag
      361 cggattttgg aggactaaag agggacggcg tcaggaagac catccgggaa ccctagacac
      421 ggcgaggtga cggcgtcaag atctacaacg tgacgccgtc agcccctaaa ctctatatat
      481 agttttgcaa ttttttgtca ttagtgtgga acttattatg gaactttgtg tgtaagaacc
      541 ctaagacgat tttagcagct ttttcaaggc tttttgcctt gagatcttcc atgttacatt
      601 gaagataagt tatcaattaa tcattcaata tgtctatgtg ttgtttgatt ttatcttgtt
      661 cttgtctttt aattaacatg ctaggctaga tttatcttgt gtttgcttag atctaatgaa
      721 acctaactat tgattattgg ttattagtgt gttattaatt gtattggatg attgttcatc
      781 gatgttaggc ttaagaaaac tggctaactt cctatacggt aactttcttg aacgtcttaa
      841 gaaacatgaa ccaatgcgta ctaaaggttt ttatggttgt atttaatgca tgaacgaatt
      901 ctagtgatcc catgttagga gcttcctagc cggctcgaca taggagtgaa gtaggagctt
      961 atagagttgg ggaagtatgt acgccacccc acgattggtt ttaaggaata cacccgtcat
     1021 ccacgcaatt aatacacact aat
//
LOCUS       DATLQL010000440         1172 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2242274, whole genome shotgun sequence.
ACCESSION   DATLQL010000440 DATLQL010000000
VERSION     DATLQL010000440.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1172)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1172)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1172
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2242274"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            615..>1172
                     /locus_tag="VNB68_04600"
     CDS             615..>1172
                     /locus_tag="VNB68_04600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36662.1"
                     /translation="MMKKVNSRIILLLVSLALFHFVSFITYYNDSSNDYEASRKHYPY
                     FLYPFSTINAYGSSTIVGNNNERFTDDTASRIRFENVTNFTDNPNDSVYGQVAASENN
                     VYVVLEESTTSDSSNNNYDIYIGKSADQGETFTKNNNNSAMDTTEVINLSNNPGFSEH
                     PQIAAYKEKVHVAWIDDSLGNKEILF"
BASE COUNT          370 a          216 c          216 g          370 t
ORIGIN      
        1 agcttcaaaa gcaagattat gctaagaaat actggataaa atgctagctg cgaccttttc
       61 atgtaatgca tgcaagacca agtttcagat aattagcatt tcagttcaaa agactcatct
      121 gaaattttgt ccatattgtg gacgcacaga tagtatagaa cctgccaaca ttattctttg
      181 ttagtttgtg tgtatgtatg tatgtatcat ctgcactgtt attgacggaa tgaagcttcg
      241 tttaacgaag catttgaatc ccttctcaga ggttttagcg aaacttttta gctcgtcttt
      301 tatataaaat attgaaacat tgaaaccttc actttagcgc ttctaaaatc acaggaaccc
      361 ttgagcccac taattgtatg ggtttaaata gagagtgcag accttaccta ctaaatcgaa
      421 agcttctggc atcgcgccaa attttctgat agatttcatt ccgtgccaat atgagggctc
      481 tctgtcaagg ttagaaagta tgctccatac ttatcccgtg gagtaggcat ttctcttcta
      541 acatgaataa tgaccattat tgctgtgata gaggtgtacc gctatgatta atagacggtg
      601 gccattttct taagatgatg aagaaagtca actcccgcat aattttgctg cttgtttcgt
      661 tagcattgtt tcattttgtt tccttcatca cttactataa tgatagcagc aatgattacg
      721 aggcatcacg aaagcattat ccttattttc tctacccttt ttctacaatt aatgcttatg
      781 gcagctccac tatagtaggt aataacaatg aacgctttac tgatgatact gctagcagaa
      841 ttagatttga gaacgtaaca aatttcacag acaatcctaa cgattctgtc tacggtcaag
      901 ttgcagcatc agagaataat gtatatgttg tgttggagga atccactacg tctgattcaa
      961 gcaacaataa ctacgacata tatattggga agagtgcaga ccaaggagaa acttttacga
     1021 aaaataataa caattctgct atggatacta cagaagtgat aaatctaagc aataatccag
     1081 gcttttctga acatccccaa atagcagcat acaaggaaaa ggttcatgtt gcgtggattg
     1141 acgatagttt aggaaacaag gaaatacttt tt
//
LOCUS       DATLQL010000441         3104 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2066296, whole genome shotgun sequence.
ACCESSION   DATLQL010000441 DATLQL010000000
VERSION     DATLQL010000441.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3104)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3104)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3104
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2066296"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            399..2117
                     /locus_tag="VNB68_04605"
     CDS             399..2117
                     /locus_tag="VNB68_04605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase I"
                     /protein_id="HVD36663.1"
                     /translation="MKWNNLEHKGVAFPPVYQPRGISIRVNGERLTLTPDLEERIYAW
                     AKKKDTHYIHDEVFQSNFLSDLKKLLPERFQNIQSVKEIDFSDAFENVEKEKKMKEAE
                     KERIRNLPIEERRKLSLAKKLERQRLTAVYGKAVLDGVEVDVANWLVEPPGLFMGRGL
                     HPLRGKWKFRVYPQDVTLNMGENGPAPEGAWRNIVHDHSSTWLATWIEKLTGKRKYVW
                     LHDSSILRQNNDKEKYDKANKLEKHITKIQREIIKRMLNSRDLQHKKLATVSYLIFKL
                     AMRVGDEKDPEEADTVGASTLRVEHIKFPVNKEIKFIEFNFLGKDSVPWQKTLEVNSE
                     DTRGLYNILKLLMNGKDDRSQIFDGITSNKVNAFLRGLDPNNVPGLTAKVFRTFITTR
                     AVKEALANPAIKVDRNSSEPEKIYVAKMANLKAAITCNHKKGIDPKNPASKRALDNFN
                     HSIQKKQEAIENVKAEIKAMKWKTETQKRKLEQKLERINMQLKLQNNTRDYNLGTSLR
                     NYIDPRVMKAWLTYVDLDWKKIYTATLQRKFKWVEDYTPANIKTFYPKQDKIAEPAVS
                     VVQEES"
     gene            2208..>3104
                     /locus_tag="VNB68_04610"
     CDS             2208..>3104
                     /locus_tag="VNB68_04610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36664.1"
                     /translation="MIVALIVVITLTILQPAINSEAQTKKKEYSTSSLFVAIFSNGDT
                     LIEQDIVADPKVSKTNITLFGRTIEDLNVADYNNNLIHYNSSGVPGKITLTSSGVSKI
                     RLTYVTPDLVSKDGRVWTFSINSADKFSLKLPANSTITDLGKEFPESVRRMGDQELLS
                     FQPGNIEIKYVIGFLGTKDQSNASIESAGLAIKDAKNRYPGIILDAAEKQLRQAIISK
                     NSEMYLEAERYATDANDLALRIARDYSNVRTTIMNTNNQIKKAAASGEDITLSKILLS
                     QSNSEFSRGQYIEAKRSADNAVV"
BASE COUNT         1114 a          557 c          633 g          800 t
ORIGIN      
        1 gagctaatta aattagatga attccgttat agaagaaaag aaaaatcagc caattgttca
       61 taacgaggtg tgctggtaca agtctttatc ccctataata ttgatatgac aatttcctat
      121 tattccacaa atgacaatgt ctcgatattg catttatcca cgagagcttc caagatatca
      181 gctgcaggga gtgaacgatt tgtggaaaat attactctgc tttactacca gtcggtaaaa
      241 tattttaata ttctgacaga aatctttaac ttcagtgaaa taaaactcta taattcttat
      301 taaaaggatt ttcttccacg ttctgggtaa ggtttaagaa tagtaaacaa gtcttctgat
      361 ttacaaagta gatggaatcc gcagcaatag tggttcgctt gaaatggaat aaccttgaac
      421 ataagggggt ggcatttcct ccagtttacc agccaagagg aataagtatt agagttaacg
      481 gtgaaaggtt aaccctcacc cctgacctgg aagaaaggat ctatgcatgg gccaaaaaga
      541 aggacactca ttatattcac gatgaagttt ttcaatctaa cttcttaagc gatttaaaaa
      601 aactgctgcc agagaggttc caaaacatac agagcgtaaa agaaattgac ttctcagatg
      661 ccttcgaaaa cgttgaaaag gaaaagaaaa tgaaagaagc ggagaaagaa aggatcagaa
      721 atctaccaat agaagaaaga aggaaattat cattagcgaa gaagctggaa aggcaaagat
      781 tgacggctgt atatggtaag gccgtcctcg atggggtcga agttgacgta gctaattggt
      841 tggtagagcc ccctgggcta tttatgggga ggggtcttca tccactaagg ggtaaatgga
      901 aatttcgagt ctacccccaa gatgtcaccc ttaatatggg agaaaatggg cctgctcccg
      961 aaggagcttg gcggaatatt gttcatgacc actcctctac atggcttgct acttggatag
     1021 agaaattgac cggcaagcga aaatatgtat ggcttcatga ttcgtcgatc cttcgtcaga
     1081 ataatgacaa agaaaaatat gacaaggcga ataaacttga aaaacatatt actaaaattc
     1141 aaagagaaat tatcaagagg atgctcaact ctcgagatct ccaacataaa aagttggcaa
     1201 ccgtatctta cctaatattc aaacttgcaa tgagagtagg agatgaaaaa gatcctgagg
     1261 aagctgatac tgtaggtgct tcaacattgc gagtagagca tatcaagttc cctgttaata
     1321 aagaaataaa gttcattgag tttaatttcc ttggaaagga tagcgtacca tggcagaaga
     1381 cccttgaagt aaattctgaa gatactagag gactttataa tattctcaag ttgttgatga
     1441 acggcaagga cgatcgctct cagatttttg atggaataac atccaacaag gtgaacgcgt
     1501 tcctaagggg cctggaccct aataatgtac cgggtctaac agccaaagtc tttaggacgt
     1561 ttattactac aagagcggta aaagaagctc ttgcaaatcc agcgataaag gtagacagga
     1621 attcatcaga gccagaaaaa atatatgttg caaaaatggc aaatttgaag gctgccatta
     1681 catgtaatca caaaaaagga atcgatccta aaaatcctgc aagcaaaaga gcgctggaca
     1741 actttaatca ttctatacag aagaaacaag aggctatcga aaacgtaaag gctgaaatta
     1801 aagcaatgaa atggaagact gagactcaga agagaaagct ggaacaaaag ttagaaagaa
     1861 tcaacatgca gctgaaatta cagaacaata cgcgtgacta caatctgggg acatccttga
     1921 gaaattacat agatccacgt gtaatgaaag catggttaac ttacgtagac cttgactgga
     1981 agaaaatata tacagccact cttcagcgca agttcaagtg ggtcgaagat tatactccag
     2041 ccaatatcaa gacattttat cccaaacaag acaaaattgc agagccggcg gtatcggtag
     2101 tacaagaaga aagctgaagt tattctactt tcttacatta tctcattaga aagcctaaat
     2161 aattttatca ggtatactag cagcaacaat tgcatttgcc aacagttttg atagttgctt
     2221 taatcgtcgt gatcactctc acgatacttc agccagctat taactcagag gcacaaacaa
     2281 agaagaaaga atattctaca agttcgttat ttgttgccat attctctaat ggcgacacat
     2341 tgatagaaca agatatcgtt gccgatccca aagtatctaa aacaaatatc acattatttg
     2401 gaaggaccat tgaggatctg aacgtagcag attataataa taatctgatc cattataatt
     2461 cgagtggtgt acccggcaaa attactctaa catcttcagg tgtttcaaag atcagattaa
     2521 cttatgtaac tcctgatctt gttagcaagg acggcagagt gtggacgttt tctattaatt
     2581 ccgctgacaa gttttcgcta aagttaccgg caaattcaac aattaccgat ctaggcaagg
     2641 aatttccaga atctgtgaga agaatgggag accaagagtt attaagcttt caaccaggaa
     2701 acattgaaat taaatatgtt attggatttc tgggaacaaa agaccaatca aatgcgtcga
     2761 ttgaatcagc agggcttgct attaaagatg ctaaaaatag gtacccggga atcatattag
     2821 acgcggcaga aaaacaactt agacaagcaa taatatcgaa aaattcggaa atgtacctag
     2881 aggccgaaag atatgcaaca gatgcaaatg accttgcact tcgtatcgcc agagattatt
     2941 ctaatgtacg cacaacaatt atgaatacga ataaccaaat aaagaaagcc gccgcttcgg
     3001 gtgaagatat aacactttct aaaattcttc tttcacagtc taactctgag ttctcaaggg
     3061 gccaatatat cgaggctaaa cgatctgcag ataatgcagt tgta
//
LOCUS       DATLQL010000442         1623 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_998164, whole genome shotgun sequence.
ACCESSION   DATLQL010000442 DATLQL010000000
VERSION     DATLQL010000442.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1623)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1623)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1623
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_998164"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1240
                     /locus_tag="VNB68_04615"
     CDS             <1..1240
                     /locus_tag="VNB68_04615"
                     /EC_number="3.4.17.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004181 - metallocarboxypeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="carboxypeptidase M32"
                     /protein_id="HVD36665.1"
                     /translation="LNREITRQTKIPRELTEAESLERIRGNMAWRRAREKSDYMMYAP
                     HLKNMIDIKKKIAEKIGYEKHPYDALLDSFEEGLTVDDLDKVFGVLTPRIQKILKKLV
                     DSGSPFCKESKLGKSKYDIQKVDELNHDILTLLQYDMKRFRMDVSTHPFTETMGLNDV
                     RITTRYEGTDFKKSISSTIHEAGHALYDLQCDQSLSVTPLEGGSSLALHESQSRFWEN
                     IVGRSPPFVQLIAPMIRKQVSFSNHATDDELYLYFNNVKADYIRVDADEVTYNLHIAL
                     RYEIEKKIFGDELNISEIPEFWNDRMEHLLGVRPTKDSQGVLQDTHWSSGLFGYFPTY
                     TLGNLISAIIASKMHKDLEDYEEDVKRGNFKPIREWLRLKIHQHGSVYAPKVLLNNSL
                     NEGYKPDYFVTYLETKYLES"
BASE COUNT          522 a          291 c          333 g          477 t
ORIGIN      
        1 actcaatagg gaaataacca gacagaccaa gataccccga gagttgacag aagcagaatc
       61 cctggaaaga ataagaggca atatggcatg gagacgggcg agagagaaat ctgattacat
      121 gatgtatgca ccccacttga agaatatgat agatataaag aagaaaatcg ctgagaagat
      181 aggttatgaa aagcatccat atgatgcatt attggattca ttcgaagaag ggcttacagt
      241 agatgacttg gataaggtat tcggtgtatt gactccgcga attcagaaga ttctgaaaaa
      301 actagtagat tcaggcagcc cgttttgcaa agagagcaaa cttggaaaat caaagtatga
      361 tatccaaaaa gttgatgagc tcaatcatga tattttgact ctcctgcaat acgacatgaa
      421 acgtttcaga atggatgtat ctactcatcc tttcactgag actatgggcc tcaacgacgt
      481 cagaataact actcgatatg aagggactga tttcaaaaag tcgatatcta gtactattca
      541 tgaagctggc catgccctgt atgatctgca atgtgatcag tcattgtccg ttactcctct
      601 tgagggcgga tcttcgcttg cgctccatga atctcagtca aggttttggg agaatattgt
      661 gggcagaagc ccgccttttg tacaattgat agctcccatg attagaaagc aagtaagttt
      721 ctcaaaccat gcaacagatg acgagttgta tctgtatttc aataatgtca aggctgatta
      781 tatacgagtt gacgctgacg aagttactta caatctccat atagcattaa gatatgagat
      841 agaaaaaaaa atatttggag atgagctcaa catctctgag attcctgaat tctggaatga
      901 tagaatggag cacctgcttg gagtgagacc aactaaggat tcacagggag tgcttcaaga
      961 tacacattgg agcagtggcc tctttggtta tttcccaact tacactttgg gaaacttgat
     1021 ttcagctatt attgcttcaa aaatgcacaa agatctggag gattacgagg aagacgtcaa
     1081 gaggggtaat ttcaagccta tcagagaatg gttaagatta aaaattcatc agcatggatc
     1141 tgtttatgca cccaaagtgc ttcttaataa tagcttaaat gaaggctata agccggatta
     1201 ctttgttacc tacttagaga ctaagtacct tgagtcctga accctaggat attttgatta
     1261 aatctatatt ctgactctta ttatactatt ttttatgatt tcttttgcta gaagtgggag
     1321 cacttacgta gataaccttt aaagctgtct ctacctgcta tatatgaacc tacttttagc
     1381 atcgatatcg gcactaattt caccgcaaac tgttacgcaa aaaagtttgt gatgatattt
     1441 ttgctaatgt agttaattat agtacagttg atgtcggcca aataaattgt ccaccttgtc
     1501 gaactatggt acatactcaa tcggcctaaa ttggattgct agtagaatat cgctaattac
     1561 aacctaatac ttgcctcgga gttggttatc gtcttagtat atcttatcca atatatttaa
     1621 tcg
//
LOCUS       DATLQL010000443         2002 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1352880, whole genome shotgun sequence.
ACCESSION   DATLQL010000443 DATLQL010000000
VERSION     DATLQL010000443.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2002)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2002)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2002
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1352880"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..216
                     /locus_tag="VNB68_04620"
     CDS             <1..216
                     /locus_tag="VNB68_04620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36666.1"
                     /translation="VKELMYDEALSKMGRSTKQTQTSLLWTDLVPERVVDVIKQSWHI
                     IEQFAQMPDRTVKIIGMKFPADGIVHF"
     gene            251..1168
                     /locus_tag="VNB68_04625"
     CDS             251..1168
                     /locus_tag="VNB68_04625"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004084 - branched-chain-amino-acid
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0009081 - branched-chain amino acid
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transaminase"
                     /protein_id="HVD36667.1"
                     /translation="MKTKGAELVWLDGDYVKWEEAKVPVMTHALHYGTAVFEGIRAYA
                     TDNNLFVFRLRDHMQRLHRSADVYSISIKYSVEELCNATVELIKKTSIKESCYIRPLT
                     FVGVHGIDLNVTKDSPTHTTIIIFPFAKYFKVEGISACVSTWRRIDGDSTPPMAKAAG
                     NYLNSILATQESKRIGFDESILLDRNGNVSEASGENIFLVRNSAIYTPQTSDSILEGI
                     TRDTTISIAKEMGYEIIERPISRTELYLADELFLTGTAAEIVAITKIDGHDVGSGKEG
                     LVTRSIRQKYEKLVSGKLKKYMDWLTPVW"
     gene            1162..>2002
                     /locus_tag="VNB68_04630"
     CDS             1162..>2002
                     /locus_tag="VNB68_04630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HVD36668.1"
                     /translation="MVESVKNNLHSKIAVIGIGGWGKNHARVLHDLGALTAVCDVSAE
                     RAKEIATLYDTTSYSSVEDLLNNERDLDACLVCTPTKTHRDVASKVIESGCHVFVEKP
                     LSFSSLECEEIVEMAKKNKVILTCGYVERFNPAVQDLKRIIQDKSYGDLLMMEFHREN
                     RMPLHIKDVGVIYDTSVHDIDTAMFLFDRGPKMVFARAGKKFHSYEDFATIMLGFDEQ
                     KVAIIASNWITPQKVRTFSAVCTEGIISGDFLTQDIKIEQAESTIIPRRHKFQEPLTL
                     ELSS"
BASE COUNT          666 a          347 c          438 g          551 t
ORIGIN      
        1 gtaaaggaat tgatgtatga tgaagcttta tcaaagatgg gaagaagcac caaacaaaca
       61 cagactagcc ttctgtggac cgacttggtg cctgaaaggg ttgtggatgt gattaagcaa
      121 agctggcata taatcgaaca atttgcacaa atgccggata ggactgtgaa gataataggt
      181 atgaaatttc ctgcagacgg tatagttcac ttttgaagac ttttataatg caatcatcga
      241 cttgcctttt atgaagacga aaggtgcaga actggtctgg cttgatggtg attatgtaaa
      301 atgggaagag gcaaaagtac cagttatgac tcatgcatta cactatggta ctgcggtttt
      361 cgagggtata cgtgcatatg ctaccgacaa caatctgttt gtcttcaggc taagggatca
      421 tatgcagagg cttcataggt ccgcagatgt ttattcaatc tcaataaagt attccgttga
      481 agagctttgt aatgcaactg tagaattgat taaaaagacg tcgataaaag aatcgtgtta
      541 tatacgtcct ctcacattcg taggtgtcca tggaatagat ctaaatgtaa ctaaagattc
      601 accaactcac acaactatca taatatttcc atttgctaaa tacttcaaag ttgaaggaat
      661 ttctgcatgc gtctctacat ggaggcgaat tgatggtgat tctactccgc ccatggcaaa
      721 agctgcaggt aactatttga actcaatcct tgcaacgcaa gaaagcaaac gcattggatt
      781 tgatgaatcc attttgctgg atagaaacgg aaacgtaagc gaggcatcgg gtgaaaatat
      841 ctttcttgta aggaatagcg cgatctacac accccaaact tctgattcta tactcgaggg
      901 aataactaga gatactacta tctcaattgc caaggaaatg gggtatgaaa ttattgaaag
      961 acccatctca aggacagaat tatacctggc agacgaacta ttcctaactg gaactgcagc
     1021 tgaaatagta gccatcacaa agattgatgg acatgacgta gggagtggta aagagggcct
     1081 agtcacaaga agtatcagac agaaatatga gaagctagta tctggcaagc taaagaagta
     1141 tatggattgg ttaacaccag tatggtagaa agtgtgaaga ataatctaca ttcaaaaata
     1201 gctgtaatag gcataggcgg ttggggtaaa aatcatgcaa gagttcttca cgatcttggg
     1261 gcactcactg cggtttgtga tgtgtcggct gaaagagcaa aagaaatagc cacattgtat
     1321 gacacaacat cttactcttc agttgaagac cttcttaata atgaaagaga tctagatgct
     1381 tgtttggtct gtactcctac caaaacccat cgtgatgttg cgagtaaggt tatagaaagt
     1441 ggttgtcatg tctttgtcga aaaaccatta tcattctcgt ctctggagtg tgaagaaatt
     1501 gtagagatgg caaagaagaa taaagtaata ttgacttgtg gctacgttga aagatttaat
     1561 cctgctgttc aagatctgaa aagaataatt caggataaaa gttacggaga ccttttaatg
     1621 atggaatttc atagagagaa tagaatgcca cttcacatta aagatgtcgg agttatctat
     1681 gacacctctg tccatgacat agatactgca atgttcctgt ttgatcgtgg cccaaaaatg
     1741 gtttttgcta gggccggcaa aaaatttcac tcctatgagg acttcgccac tataatgcta
     1801 ggatttgacg aacaaaaagt tgcaataatc gcttcaaatt ggatcactcc acaaaaagtt
     1861 cgaacatttt cggcagtttg taccgaaggc ataattagtg gagatttcct tactcaagac
     1921 ataaaaattg agcaggcaga atctacaata attccaagac gtcataaatt tcaagaacca
     1981 ttgacattag agttgtcaag tt
//
LOCUS       DATLQL010000444         1032 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_823457, whole genome shotgun sequence.
ACCESSION   DATLQL010000444 DATLQL010000000
VERSION     DATLQL010000444.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1032)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1032)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1032
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_823457"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(75..710)
                     /gene="hsp20"
                     /locus_tag="VNB68_04635"
     CDS             complement(75..710)
                     /gene="hsp20"
                     /locus_tag="VNB68_04635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042026 - protein refolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="archaeal heat shock protein Hsp20"
                     /protein_id="HVD36669.1"
                     /translation="MSITPDDWFDRFFGNFPFGKRGPRSYFDDMFGGFDRMRKEMERE
                     FEESFKDLETKAPKDLIREYETPEGGKVREIGPFVYGYSMTIGPDGKPRVKEFGNVKS
                     PLSGSRGFMNTPMISSEREPLSDVSITDKEVKVVIEMPGVPKDKIKLSAYQDKLEITS
                     QDPERKYHEIVEIPPRADIETIRSSYNNGILEIVFKKKDEKGSKGKEIKIE"
BASE COUNT          282 a          220 c          165 g          365 t
ORIGIN      
        1 acaccctgag tcgtgaaata gaaaaataaa gatggaaaat aaatgagagc agaatagagc
       61 caaaggcgat atttctactc tatcttgatt tcttttccct ttgatccttt ctcgtctttc
      121 ttcttgaata ctatttcaag aatgccgttg ttgtaactag atctaatagt ttcaatatct
      181 gctcgaggcg gtatttcgac tatttcgtga tattttcttt caggatcttg gctagtaatt
      241 tccagtttat cctgatatgc actaagtttg atcttgtctt taggtactcc aggcatctct
      301 atcacgactt taacttcctt atctgttatc gatacgtctg acagtggctc cctctcggaa
      361 gagatcatag gtgtgttcat aaagcctcga ctcccactta gtggagattt tacatttcca
      421 aattctttaa ctctcggctt gccgtcgggc ccaattgtca ttgaatatcc atacacgaaa
      481 ggtcctatct ctcttacctt tcctccttct ggcgtttcat attctcttat cagatctttt
      541 ggagccttcg tttccaaatc tttaaaagat tcttcaaact ccctctccat ttcttttctc
      601 attcgatcaa atcctccaaa catgtcatca aaataactgc gaggtcctct ttttccgaat
      661 gggaagttcc caaagaatct atcaaaccag tcatctggtg taatactcat tttagatcac
      721 attatctttt gttcatcaaa ttatttaaaa cttaatttta agtaggcttt aacttcccga
      781 atctataaat tgtctcttga tgtttggtta agaaacatac ggaaattcag ttccaaataa
      841 cagacgatat tggcatgtac tagtttagtg atgtcgaaac aaattcatga aagttagccc
      901 cataactttc gtggaagaag gaccatctta tagtttctga gagctacgct agtttggtcg
      961 agatgtaata ataattcatt atgtctcctc caaccgtttt gacttgaaca tctgtgaacc
     1021 ctgtatcgag aa
//
LOCUS       DATLQL010000445         1304 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2066460, whole genome shotgun sequence.
ACCESSION   DATLQL010000445 DATLQL010000000
VERSION     DATLQL010000445.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1304)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1304)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1304
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2066460"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            264..369
                     /locus_tag="VNB68_04640"
     tRNA            join(264..278,309..369)
                     /locus_tag="VNB68_04640"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:330..332,aa:Glu,seq:ttc)
     gene            472..>1304
                     /locus_tag="VNB68_04645"
     CDS             472..>1304
                     /locus_tag="VNB68_04645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HVD36670.1"
                     /translation="MNRRNLETNPLLEQFSEYLLKIDDALKRELDLYSWSEFYAPLRY
                     ACDGGKRIRPLILVLSAESVMTRTADSLRIGEDVFFAACAIELLHTESVIHDDIIDEE
                     NLRRGKPSFHVKYGYNSSILTADFVLGIILSIGSKLNNSRVAIELSNAALKMSEGEIL
                     EIKLAEDLKIGEDDYIKVLEQKTASLFEASAKIGAILGGGKEDEIQAMAAFGNLLGIA
                     YQIHDDLIDWNNEDRLFNILVKKNEQSKEFVDRMEKLYLSYSSKAKKELRKIKDSTQK
                     S"
BASE COUNT          430 a          204 c          281 g          389 t
ORIGIN      
        1 tagctaatac aattatacta tactatctaa acgtgaaata ttttgagcta actagcgata
       61 agatgatttc gtattctaat agtagagaag gatgttaaga ttattatcat aatcataaac
      121 gtagactgaa gtcatgatga tttcgaatca aggctagagt tcgcaatgat catttcgaat
      181 caaagctaga gttttcactg cagcagctgc tggtgctgac aggaaaagat tttatgtgaa
      241 aagactgtcc actctcagca agtgctccgg tggtgtagta gctgatcaat aaagtatcag
      301 ctgcatagtt cggtcaagca ttgtggcctt tcgagtcgca gatcccgggt tcaaatcccg
      361 gccggagcat tgatataaat aattgaagca ttattcctat agttttgcat ctgtgtggta
      421 aagcattaat atgttgaata tttcaagata agcacaggca agaagtgatc tttgaataga
      481 agaaacctgg agaccaatcc cttgttagaa cagttcagcg aatatctgtt aaaaatagac
      541 gatgccctca agcgagaatt agatctctat tcttggtcag agttttatgc cccgttaaga
      601 tatgcatgcg atggaggaaa acgcatcaga ccccttattc ttgtgctttc tgctgaaagc
      661 gtcatgacca gaacggcaga ttcgttaagg attggtgaag atgttttttt tgctgcttgt
      721 gctatagaac ttttgcatac agaatctgtt atccatgatg atattattga cgaagagaat
      781 ctaagacgag gaaagccctc ttttcatgta aagtatggat acaacagcag tattttgact
      841 gctgattttg tgttaggaat tattctcagt ataggttcca agctaaataa ttcacgtgta
      901 gcgattgaac tgtctaatgc tgccctaaaa atgagcgaag gagagatatt ggaaatcaaa
      961 ttggctgaag atcttaaaat cggagaggat gattatatta aagttcttga acagaaaact
     1021 gcttctctct ttgaagcatc tgcaaagata ggagcgatac taggtggagg aaaagaggat
     1081 gaaatccaag ctatggctgc ttttggtaat ttgcttggaa tagcatatca aattcatgat
     1141 gatttgattg attggaataa cgaagacagg ctctttaata tattggtaaa aaagaatgaa
     1201 caatcaaaag aatttgttga tcgaatggaa aagctttatc tatcttattc ttctaaagcc
     1261 aagaaggaac ttcgtaagat aaaagatagt actcaaaaga gcca
//
LOCUS       DATLQL010000446         1024 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_823566, whole genome shotgun sequence.
ACCESSION   DATLQL010000446 DATLQL010000000
VERSION     DATLQL010000446.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1024)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1024)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1024
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_823566"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..298
                     /locus_tag="VNB68_04650"
     CDS             <1..298
                     /locus_tag="VNB68_04650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36671.1"
                     /translation="SPETKSPETKSPETKSPETKSPETKSPETKSPETKVDTSPNNDL
                     AEPKIKEDNFNKYDFNEIHLADPEMEVHKDQETKVLVPTLPDISTPIDPFGPSG"
     gene            686..>1024
                     /locus_tag="VNB68_04655"
     CDS             686..>1024
                     /locus_tag="VNB68_04655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36672.1"
                     /translation="MIRKFIIAGCILIGLFFVLSILVSPKIPPFHLGQLVQENDLKAF
                     DEVIKSRQVWLDKPMVLLTQYGREVIWPVVILLIAIFGGWEGRKTALVIVIAVLVLIP
                     LSIISKDLVAR"
BASE COUNT          329 a          179 c          227 g          289 t
ORIGIN      
        1 gagtccagag acgaagagtc cagagacgaa gagtccagag acgaagagtc cagagacgaa
       61 gagtccagag acgaagagtc cagagacgaa gagtccagag acgaaggtgg atacgagtcc
      121 gaataatgac ttggcagagc ctaagattaa ggaagataac tttaacaaat atgattttaa
      181 tgaaattcac ttagcagatc ctgagatgga agtacataag gaccaagaga ctaaggtact
      241 tgtccccacc ttacctgata tctccacgcc aattgatcca tttggaccat caggttagaa
      301 ggagcatcaa atattgctcc acctcgcata tattcattac tgattcctag taaccatatc
      361 atttagaagt tacactaccg ttactttaac aattaatata ttctagaata agtagtccgt
      421 agtgttcatg agagtacgtg tgtagtatgt gaaaagcgag acgtgtgatg aatttatctt
      481 tggatggtgg gactaattga ttttagtagg aaaatcctag atttgttctg cttgctgtgg
      541 tcgctttaga tattaaaaac ggatagcaga acaaggaaag gagagaaatc ctcctgactg
      601 tttatgcaag ctctaggtat tgcctacata tattcctgtt tcttggccat ccaaatataa
      661 gaagccgcta caaatccctt gttgcttgat taggaagttt atcattgctg gttgcatttt
      721 aattggatta ttcttcgtat tatcgatact tgtgtcacca aaaatccctc catttcactt
      781 gggacaacta gtgcaagaaa atgatttgaa agcatttgat gaggtaatta aatcacgcca
      841 agtgtggctt gataagccca tggtcctgct gacacagtat ggcagagaag taatatggcc
      901 agtagtaatc ttgttaattg caatttttgg aggatgggaa ggaagaaaaa ctgcattagt
      961 gatcgtgatt gcagtactag ttctaatacc attatccatc attagcaaag atctagtggc
     1021 aagg
//
LOCUS       DATLQL010000447         1078 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2423287, whole genome shotgun sequence.
ACCESSION   DATLQL010000447 DATLQL010000000
VERSION     DATLQL010000447.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1078)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1078)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1078
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2423287"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..244)
                     /locus_tag="VNB68_04660"
     CDS             complement(<1..244)
                     /locus_tag="VNB68_04660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase glutaminase
                     subunit PdxT"
                     /protein_id="HVD36673.1"
                     /translation="MNELLIGVLGLQGDIEENIKAITDAFKEMKIKGKVIPVRYPEEI
                     MKVDGLIIPGGESTVMGLLIAIKNGLLDAITRILQEG"
     gene            complement(241..>1078)
                     /gene="pdxS"
                     /locus_tag="VNB68_04665"
     CDS             complement(241..>1078)
                     /gene="pdxS"
                     /locus_tag="VNB68_04665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0042823 - pyridoxal phosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase lyase subunit
                     PdxS"
                     /protein_id="HVD36674.1"
                     /translation="MDVTNVEQAQIAEDAGAVAVMVLDKLPYDVRHAGGVARTAGVKV
                     IQAILDSVSIPIMAKCRIGHLSEADILEEMGVDMIDESEVLSPADESRHIWKWNYTTP
                     FVNGAKNLGEALRRIEEGASMIRTKGEPGTGDVSHAVTHIRMVNNEIKKIKGIYDNND
                     DQELIKISRELQSSFEIVKETGKLGRLPVVNFAAGGISTPADAALLMKLGCDGIFVGS
                     GIFKAEDPLERAKAVVIATTYFDDPKTVLEAQKMIDEKKSMLGLDTKNLNLRMQERGP
                     TV"
BASE COUNT          279 a          266 c          150 g          383 t
ORIGIN      
        1 atccttcttg tagtattctt gtaattgcgt ctaataatcc attctttata gcaataagta
       61 aacccattac ggtactctcg ccgcctggta taatcaaacc atcaactttc ataatctctt
      121 cagggtaacg aacaggaatg actttgcctt taattttcat ttctttaaat gcatctgtta
      181 ttgctttgat attctcttca atatcgcctt gaagacccaa tactccaatt aataactcat
      241 tcaaactgta ggtcctcttt cttgcattct taaattcaag tttttggtat caagaccaag
      301 cattgatttc ttttcatcaa tcattttctg tgcctctaga actgtcttgg gatcgtcaaa
      361 ataagtagtc gctataacga cagctttcgc tctttcaagt ggatcttctg ctttaaatat
      421 tcctgaacct acaaaaattc catcacaacc tagcttcatt agcagggcag cgtccgctgg
      481 tgtagatatt cctcccgcag caaaatttac aacaggcaat cttccaagct tccctgtttc
      541 tttaactatc tcaaaggaag attgtaactc tcttgaaatc ttaattagtt cttgatcatc
      601 gttattatcg taaattccct ttatcttttt aatttcgtta tttaccattc ttatatgggt
      661 tactgcatgt gagacatccc ctgtccctgg ctcacctttt gttctaatca ttgaagcccc
      721 ttcctctatc ctgcgtagtg cctcacccaa attcttagct ccattcacaa agggtgttgt
      781 gtaattccac ttccaaatat gcctactttc atcagcagga ctaagtactt cactctcatc
      841 gatcatatca actcccattt cttcaagaat atcagcctca gataagtgtc ctattctgca
      901 ctttgccatt attggtatac tcacagaatc taatattgct tgaattactt taacgcctgc
      961 cgttctagcc actccacctg catgtcttac atcataagga agtttatcca agaccatgac
     1021 tgcaactgct ccggcatctt cggctatctg agcttgttct acattggtta cgtccatt
//
LOCUS       DATLQL010000448         1054 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_469149, whole genome shotgun sequence.
ACCESSION   DATLQL010000448 DATLQL010000000
VERSION     DATLQL010000448.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1054)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1054)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1054
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_469149"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            92..859
                     /locus_tag="VNB68_04670"
     CDS             92..859
                     /locus_tag="VNB68_04670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenine-N1)-methyltransferase"
                     /protein_id="HVD36675.1"
                     /translation="MKIAEGQHVLVFYQRDKTWLVKGVSEHKLHTHVGIVDFSKIIGL
                     EYGSKYITNKEKTVYLLKPTVYDFILKSDRKTQIIYPKDLGYIAIRTGLKNGSKVIEI
                     GTGSAALTTFFASIVKPDGHIFTYDVNPEFMKIARRNLEKADLQQYVTMSQHDLHEGL
                     EERDADIAVIDLGDPWNVLEIVYNSIKPSASLVAICPTINQIEKTAIQMRKVGFVDIE
                     ATEILLRNIEAREGMTRPSMRMIGHTTYLIFGRKIGL"
BASE COUNT          331 a          197 c          223 g          303 t
ORIGIN      
        1 tttaagttga tcttttaatt aataaatcta aattccattt gaaggagtgt attgcaaggt
       61 tttttatcac cagtacggct ttcagatata aatgaaaatt gcggaaggcc agcatgtact
      121 tgtcttctat caacgagaca agacatggtt agtgaaaggt gtcagtgaac ataaacttca
      181 tacccacgtt gggatcgtcg atttttcaaa aatcattgga ctggagtacg gatctaaata
      241 catcaccaac aaggaaaaga cagtatatct tctaaaacca actgtgtacg actttatatt
      301 aaaatctgac aggaagacgc agattatcta cccaaaagat cttggctata ttgcgattag
      361 gacaggttta aagaatggat caaaggtaat agagataggt acgggtagcg cggcactcac
      421 aacatttttc gctagcattg tgaaaccaga tggccatatt tttacatatg acgtcaaccc
      481 agagtttatg aaaattgcaa ggagaaatct tgagaaggca gatcttcaac aatatgtgac
      541 catgagtcag cacgatctgc acgaaggact agaagagcgc gatgctgata ttgcggttat
      601 cgatctaggg gacccatgga atgtattgga gatcgtctat aactcgataa agcctagcgc
      661 ctcgcttgtg gccatttgcc cgacgataaa tcagattgag aaaactgcaa tccaaatgag
      721 aaaagtagga tttgtggata tcgaagctac agaaatccta ttgaggaata ttgaggcaag
      781 ggaggggatg acacgaccgt ctatgcgaat gataggtcat accacttatc tgatctttgg
      841 ccgcaaaatt ggactttgaa tagcatattg cctaatggtc aaccagtcat tttccgtatg
      901 caaagactag tctagatcat actgatcaat cggcctatgg ttaattttct tgatatatta
      961 ttctgagctc atctaaggtc aatttttccc cggccttcat tttccgctct gctctctgtt
     1021 tgaactcgat cattgatgac tcatattcat tacg
//
LOCUS       DATLQL010000449         1005 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2424319, whole genome shotgun sequence.
ACCESSION   DATLQL010000449 DATLQL010000000
VERSION     DATLQL010000449.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1005)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1005)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1005
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2424319"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..819)
                     /locus_tag="VNB68_04675"
     CDS             complement(<1..819)
                     /locus_tag="VNB68_04675"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014425.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HVD36676.1"
                     /translation="MNKGKFRSILFLSIPLILSAFTHLWNPLGFPSVHIDEAHYMRRA
                     MLVLDGSGPQESANSGYPRTYDHPYFGQLFLAGLLGAVGYPNSLHPTPDVQSIEMLHL
                     VPRVIMGILAVVDTFLIYKISERRYNKNVALIASVLFAVMPMTWILRRIYLDTLLMPL
                     LLSSILFAIYIRGPKNNNIQQWPRININKNLLVLLSGIFLGLAIYTKIPAFTMIPVVG
                     YLVVSNSNSSRKKTLALWLIPVILIPLLCPAYAFSIGHGDLWLDWVLWQTGRHKP"
BASE COUNT          327 a          188 c          202 g          288 t
ORIGIN      
        1 aggcttatgt ctcccagttt gccacagtac ccaatccaac cagagatccc catgaccaat
       61 cgaaaacgca tacgcggggc atagtaacgg tattagaatg actggaataa gccataaagc
      121 aagggtcttt ttcctactag agtttgagtt tgataccaca agatatccta caacgggtat
      181 cattgtgaac gcaggaatct tggtatatat tgcaagaccc aggaaaatac cagacaataa
      241 tactagcaga ttcttgttta tgttaatcct aggccattgt tggatattgt tattttttgg
      301 ccctctgatg taaattgcaa atagaattga agataagagt aagggcatga gtaaagtgtc
      361 caaatatatt cttcgtagaa tccatgtcat cggcataacc gcaaaaagaa cagacgcaat
      421 tagggccaca ttcttgttat atcgcctttc agatatttta tatatcaaga aggtatcgac
      481 cacagctaga atacccatta ttactcttgg aaccaaatgg agcatttcta tagattggac
      541 atcgggtgta gggtgtaacg aatttggata tcccacagct cctaataatc cagctaaaaa
      601 caattgtcca aagtatgggt ggtcataagt tcgtggatat ccactattgg cagattcctg
      661 gggcccggaa ccatcaagta ccaacattgc cctccgcata taatgcgctt catcaatatg
      721 tactgaagga aaacctaatg gattccagag gtgggtgaac gctgatagaa tcaacgggat
      781 tgacaaaaac aggatactac gaaatttgcc tttgttcact gttagtacct ccgctgataa
      841 gacaatttaa agtaaggcat gacacaaact ttgttgatat aatggtaaaa gattatgatt
      901 ccaaggtgag ctttttataa tctcttattt tagtttagct taaatatatt ttagcagtgg
      961 aagaaatcat gaacaagata tcgcttattg tagtgttgcc aatga
//
LOCUS       DATLQL010000450         1264 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_646321, whole genome shotgun sequence.
ACCESSION   DATLQL010000450 DATLQL010000000
VERSION     DATLQL010000450.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1264)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1264)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1264
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_646321"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..313)
                     /locus_tag="VNB68_04680"
     CDS             complement(<1..313)
                     /locus_tag="VNB68_04680"
                     /inference="COORDINATES: protein motif:HMM:NF013543.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HVD36677.1"
                     /translation="MLPIEISVYAAISAALFFDFVNGFHDSANSIATVVGTRVLRPLY
                     AVGIAAVANFAGPFIFGTAVAATVGKGIIQPSFSTVDVIFAGLIGAIVWDLVTWYFGL
                     PS"
     gene            complement(322..954)
                     /locus_tag="VNB68_04685"
     CDS             complement(322..954)
                     /locus_tag="VNB68_04685"
                     /inference="COORDINATES: protein motif:HMM:NF013982.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF47 family protein"
                     /protein_id="HVD36678.1"
                     /translation="MTSGWLSWVRANDVEIMTVLQNQASNLVKATSVLSESISDYSTL
                     KEKNTILKNLEHDGDQLTHKLFTIIDKTFVTPIDKEDISELTSAIDQVLDDTHGTCDK
                     LVLFKIQKPPRYLQEFVTLLETASQEIYSAVTELHKGKREKLLQYSKAISKCEHDGDS
                     VYRIAIADLFEAHDAIDIIKLKEVYETLENALDRSRDVADVIEDIALKYR"
BASE COUNT          377 a          243 c          242 g          402 t
ORIGIN      
        1 aagacggaag gccgaaatac caagtaacaa ggtcccatac tatagcccct attaaacctg
       61 caaatattac gtctactgtc gaaaatgatg gttgtattat tccttttcca accgttgccg
      121 ctacggcagt accgaaaatg aaaggtccag caaaattggc aacggccgca atacctacgg
      181 catataatgg cctaagtact ctagtaccta ccaccgtagc gatagagttg gccgaatcat
      241 gaaaaccgtt gacaaaatca aaaaagaggg cagcagaaat cgctgcgtaa actgagattt
      301 cgatgggaag caaatgaatc cttaacgata ttttaatgca atatcttcga ttacgtcagc
      361 aacgtctctg gacctgtcaa gagcattttc gagcgtttca tagacttcct tcaattttat
      421 tatatctatt gcatcgtgtg cttcaaataa atcagcaatt gcaatacgat aaacgctgtc
      481 tccgtcatgt tcacacttgc tgatggcttt agaatattgt aataatttct cacgctttcc
      541 cttatgtaat tcagtaactg cactgtagat ttcttgggac gctgtttcca atagcgtaac
      601 gaattcctgc agataacgag gcggcttctg aattttaaaa agaaccagtt tatcacaagt
      661 gccatgtgta tcatcaagca cttggtcgat ggcgctcgtt aattcggaaa tgtcttcttt
      721 gtcaatgggt gtgacaaatg tcttgtctat tatagtaaat aacttatgag taagctggtc
      781 gccatcatgt tccaaatttt ttagtatggt atttttttct tttagtgtac tgtaatcgct
      841 tattgactca gagagaactg atgttgcctt tactaggtta cttgcttgat tctgcaatac
      901 agtcatgatt tcaacatcat ttgcacgtac ccaagagagc cagccacttg tcattagact
      961 tggttgtaac tttgattata gatacttttc caatctcatg gttcatcgac aattattcct
     1021 aagacgtgca ggagctaatc atatgttatc ttaaggaaaa aaagttcgta gaggcactga
     1081 gggctggtga cgacatgagt gcaaaaagtg gattcctaat ttaagaatgg aagattacaa
     1141 tctttaagga tttgttattg aagacttatt tttataaaca aattgtgttt tagaaaggat
     1201 tctttaactc caacgtctag gccaatttta tttcgataca agctctgcca tttattgatt
     1261 tgat
//
LOCUS       DATLQL010000451         1602 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1354576, whole genome shotgun sequence.
ACCESSION   DATLQL010000451 DATLQL010000000
VERSION     DATLQL010000451.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1602)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1602)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1602
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1354576"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..374
                     /locus_tag="VNB68_04690"
     CDS             <1..374
                     /locus_tag="VNB68_04690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HVD36679.1"
                     /translation="ESETLQEYEGILSDIFSSRAVSQIMDFFLDHKEFDYSPAEIAKK
                     TGLSFRTIFRELPHLEKNQLIYTSRKIGKTNMYRLNIDFQAVTFLEKFAFQMSQLQVK
                     EPELSLSKEDITNIKRGSDFV"
     gene            complement(573..920)
                     /locus_tag="VNB68_04695"
     CDS             complement(573..920)
                     /locus_tag="VNB68_04695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36680.1"
                     /translation="MPEKDPSSSNAIPSTKKIEGVIMMLTVLIKIGKYLPWIVLAFAA
                     VNMILAVLCFAWWNNMIGGIINLVLAIAGFVFFSQLVRRRKIHRYNYGSTRRDLSREA
                     KITDERKVRAEAR"
     gene            1405..>1602
                     /locus_tag="VNB68_04700"
     CDS             1405..>1602
                     /locus_tag="VNB68_04700"
                     /inference="COORDINATES: protein motif:HMM:NF014755.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006303 - double-strand break repair via
                     nonhomologous end joining [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ku protein"
                     /protein_id="HVD36681.1"
                     /translation="MAARSIWKGSISFGLVNIPIKLYSAAEDKTFSFNQLCQNGHRIQ
                     YKRWCPVEDTEVPYQEIQKGYE"
BASE COUNT          488 a          329 c          298 g          487 t
ORIGIN      
        1 acgaaagtga gacccttcag gaatatgagg gtatactttc cgacatcttt tcttcacgag
       61 ctgtctcaca gataatggac tttttccttg accacaagga atttgattat tcgcctgcgg
      121 agatagcaaa gaaaacagga ctatcattta gaaccatctt ccgagaactg ccacatcttg
      181 agaaaaacca actgatatac accagcagaa aaattggtaa gacaaacatg tacaggctaa
      241 atattgactt tcaagcggtg acctttctag agaagtttgc atttcagatg tcacaactcc
      301 aggttaaaga accagagtta tccttgagta aagaggatat aaccaatatc aagagaggtt
      361 cggatttcgt ctaagggaag cggagagacc tgtatggcta ttttagagga agacataaca
      421 tttcatattc acaaatatga acacgcgcat aatatcatag ctctgttagc tctgcaggat
      481 ggcaggattg cctaggcttc aggcttcttg tcgcagttgc tgcgcaagga cggactataa
      541 tagcagacac atgcctctct ccatctgcca ccttatcttg cctcggcgcg tacttttctc
      601 tcatcagtga tctttgcttc tctagataga tcccttcttg tggatccata gttgtatcta
      661 tggatcttgc gtcttctaac gagctgagaa aagaagacaa agccggcaat cgccaatact
      721 agattgatta ttccacctat catgttgttc caccatgcaa agcaaagcac agcaaggatc
      781 atatttactg cagcaaaggc tagtacaatc catggaagat acttgcctat ctttatcaaa
      841 acggttagca tcattattac tccttcaatc ttttttgtgc tgggtattgc gttagaagat
      901 gatgggtctt tttctggcat gcaggtatgt ctctattgta caacaagtaa tttaaccata
      961 aataaatatc tgtcaatcta tttttctaaa tgccctacgc taatcaagag aacgaattat
     1021 tagataacct acacttggca caggacttgt ttagaaatct catcatccaa tttttatctg
     1081 catgacgact ttctaaacca agtaatccat ttagtgatgt ggtgatgatt aaacattgca
     1141 tttaccgatc ttttcattaa caccaataac cgggacaaat tcattacgcc gatccagaaa
     1201 ttagatgtgg acatatgttt actctagcga gaatatatat tcctaatttt gaatttctat
     1261 tttactcggt ctttacgcct gtctttttct ttttgctaat tttcctttcc tcatcgtcgt
     1321 cactgaaata gtactataga ttaatattat attttattct ttagtatcct ttaaagacat
     1381 tagagctcag ctggtaaagc tgggatggcg gcaaggagca tatggaaagg tagcatatcc
     1441 ttcggcctgg tcaacatacc tatcaagctt tactcagcag ctgaagacaa gacattttct
     1501 ttcaatcaac tatgccaaaa tggtcataga atacaataca agcgatggtg tcctgttgaa
     1561 gacacagaag tgccatatca agagattcaa aagggatacg ag
//
LOCUS       DATLQL010000452         2031 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_291378, whole genome shotgun sequence.
ACCESSION   DATLQL010000452 DATLQL010000000
VERSION     DATLQL010000452.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2031)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2031)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2031
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_291378"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            269..1645
                     /locus_tag="VNB68_04705"
     CDS             269..1645
                     /locus_tag="VNB68_04705"
                     /inference="COORDINATES: protein motif:HMM:NF016724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HVD36682.1"
                     /translation="MLKTSLSYDKGTIVIKGLAHIPFATMDPRTSSLRAQALHYTNIM
                     DYLEESGIDYNNFVLDLVPSPHLVADNVSLRDYQEKALQNWVKAGMRGCVVLPTGSGK
                     TVIGIKAIERANSATLVVVPTLDLMNQWTQVLSKHFTNTRIGNLGGGTDDVQAITVAT
                     YDSAYIRAASFGNKFSLIVFDEVHHLAAPGYRSIAEQMVAPYRLGLTATIEREDNLHK
                     DFPKLVGGVVFQAHPSELAKDKHLASYEIERRQVEMTAEEKREYQRNFGTYQVCLKKL
                     GIKMNYHGSFQRLIMMSGRSKVAREAILARNKAMDIALNSKSKIEELKEILTENKGLK
                     TIIFTQHNSLVHEISDRFLIPLITHKTGKEEREDALAGFKEGRYSAIVTSKVLDEGVD
                     VPDAEVGIIVSGTGSGREFIQRLGRLLRPKTDTTKKAKLIEIISSDTRETGTSAKRKM
                     ALARINEK"
     gene            1844..1993
                     /locus_tag="VNB68_04710"
     CDS             1844..1993
                     /locus_tag="VNB68_04710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36683.1"
                     /translation="MISIGRKLFDEVDIPRESKIISEDAITKTLQRESSWTAEINGMN
                     HFQME"
BASE COUNT          721 a          337 c          416 g          557 t
ORIGIN      
        1 tttggttaca gtaagtacat tgcaaataac ttggatcgac tgtaggcact agaaatccta
       61 ttttgcaact acatttctta tattctgtga aaaccataac tgaatctcac tttcatgtga
      121 ttattaagtt ggatcagttt ctgttagtgt ctttctgggt ctaaattgtt aggtccaaat
      181 gattggaaag aaaaaattta atcagtccag atgtaacaca ttattccaga caaagatttt
      241 ttaattattt tccattaacc atgtaaagtt gttaaagact tcacttagtt atgataaagg
      301 aaccatagta attaaaggtc tagcacatat tccttttgct acaatggatc ctagaacaag
      361 ctcgctaaga gcgcaagctc tgcattatac aaatattatg gattatctgg aggaaagtgg
      421 tatagattac aataattttg ttttagatct agtaccttct ccccatcttg tagcagataa
      481 cgtttcttta agagattatc aagagaaggc tttacaaaac tgggttaaag cagggatgag
      541 aggttgtgta gtactcccaa ctggatctgg caagacagta ataggcatca aagcaattga
      601 aagagctaat tctgccacac tcgttgtagt gccaacgcta gacctaatga accagtggac
      661 acaagttcta tcaaaacact ttacgaatac aaggattgga aacctaggtg gtggaacaga
      721 cgatgtccaa gcaatcacag tggccactta cgattctgct tatatacgag ctgcaagttt
      781 tggtaacaag ttttcactaa tagtgtttga tgaagtacac catctagccg caccaggata
      841 tagatcgata gcagaacaaa tggtagctcc ttacagattg ggtttgactg ctaccataga
      901 aagagaagat aatttacata aggattttcc aaaattggtt ggtggagtcg tctttcaggc
      961 acatccatca gagcttgcca aggataaaca tctggcgtct tatgaaattg agagaagaca
     1021 ggtggaaatg acagcagaag agaagcgaga atatcaaaga aattttggaa cctatcaagt
     1081 ctgtctaaag aagcttggaa ttaaaatgaa ttaccacggt tcctttcaga gattaataat
     1141 gatgtctgga aggagcaaag ttgccagaga agcaatacta gccagaaaca aagcaatgga
     1201 cattgcatta aatagtaaat caaaaattga ggaattgaag gaaatcctca cagaaaataa
     1261 gggtttaaaa actataattt ttactcagca taatagccta gtgcatgaaa tatcagacag
     1321 gttcctgata ccattgataa cccataaaac aggtaaagaa gagagggaag acgctttagc
     1381 aggctttaag gaaggacgct attcggcaat agtaacctct aaagttttag atgagggtgt
     1441 tgatgtccct gatgctgaag ttggtataat agtcagtgga acagggagtg ggagggaatt
     1501 tatccagagg ctcggtagac ttctaagacc gaagacagat accaccaaga aagctaaact
     1561 aattgaaata atctcatctg acacacgtga aacaggaact agtgcaaaaa gaaagatggc
     1621 actagctaga attaatgaaa agtaaaaaag acaacatctt caagatttac acatttagct
     1681 gataacgctg atgcctgcgt cagttttgta tgcggaaaag ataggacttc attcaatacg
     1741 tatgaataca tcaatccgac cttgtgaatc agatttgaca ctatactgag acctagtgag
     1801 ctgtataaaa ctaccttata ttaaacatag ttcaaatcat gctatgattt caataggacg
     1861 caaattattt gatgaggttg atattcctag agaaagtaaa ataatttctg aagatgcaat
     1921 taccaagaca ttacaaagag aaagtagctg gacagctgaa atcaatggca tgaatcattt
     1981 ccaaatggaa tagcgtctgg tagcggtacc tcattaatac atagtaacgg t
//
LOCUS       DATLQL010000453         2026 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2246268, whole genome shotgun sequence.
ACCESSION   DATLQL010000453 DATLQL010000000
VERSION     DATLQL010000453.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2026)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2026)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2026
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2246268"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1937
                     /gene="uvrB"
                     /locus_tag="VNB68_04715"
     CDS             <1..1937
                     /gene="uvrB"
                     /locus_tag="VNB68_04715"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HVD36684.1"
                     /translation="PRGDQPEAIKKLASGLSSKKGRQTLLGVTGSGKTFTIANVIAKS
                     NKNTLVISHNKTLAAQLFGEFKEFFPNNNVGYFVSFYDYYQPESYIPQTDTYIEKDTE
                     VNEKIEKMRLEATAMLLSGEPTIIVSTVSCIYSLGSPREWEETATTLMKGMAINRKAL
                     IHNLIESRYERNDISVVPGKFRVRGDTIDIIPGYSDDLIRICLFGDEIEKISVHDHLT
                     MKKIRDADTIKIFPAKHYVVGDNSRLSAIESIKEELQSWLPNLPSELERQRLSSRTKY
                     DLEMIQELGYCSGIENYSRHLEGRNPGQPPYCLLDFFGDDFLIVIDESHVTIPQLHGM
                     YNGDHTRKKMLIDYGFRLPSAFDNRPLRFQEFEKYLQNVIFVSATPGNYELNLSCQVV
                     EQLVRPTGLVDPKVEIRPTKNQIQNLITEISMRTKKNQRTLVTTLTKRMAEDLAEFLA
                     KSDVKVRYMHSEIEGIERTELIRQLRLGEFDVLIGINLLREGLDIPEVALVAILDADK
                     EGFLRNDTSLIQTFGRAARNIDGAVIMYADQVTQSIIAAIAETDRRRETQIRYNKDNA
                     ISPKSVVKSIPERATDNRVLLLNTKSMTKSDLIKLSLETEASMKKFAEELDFEKAIEF
                     REKLSTIKKAIGEPMLSEVH"
BASE COUNT          713 a          363 c          420 g          530 t
ORIGIN      
        1 caccacgagg agatcaaccg gaagcaatta aaaaattggc aagcggatta tcctcgaaaa
       61 agggacgaca aactttactt ggggtaacag gtagtggaaa aacattcaca atcgccaatg
      121 ttatcgcaaa gtcaaataaa aacactttag taatttcgca taataagact ttggctgccc
      181 agttgttcgg tgagttcaag gagttcttcc caaataataa tgttggatat tttgttagtt
      241 tctatgacta ttatcagcct gagagctata ttccgcaaac agacacttac atagaaaagg
      301 acaccgaggt taatgaaaag attgagaaaa tgaggttgga agccactgca atgctgctgt
      361 caggtgaacc tacaataata gtatcaaccg tttcttgtat ttactcgcta ggatccccaa
      421 gagagtggga agaaactgct acaaccctga tgaagggaat ggcgatcaac agaaaagctt
      481 tgatacataa tttaattgaa tcacgctatg aacggaatga catttctgtt gtcccaggca
      541 aattcagagt tcggggcgat accatcgata ttatcccagg atactccgat gatctaatac
      601 gcatttgtct atttggagat gagattgaaa agatatccgt tcacgatcac ttgaccatga
      661 aaaagataag agacgccgat actataaaga tcttccctgc aaaacattac gtagtcggag
      721 acaattctag gctatctgca atagaatcaa ttaaagaaga gctacaatcg tggcttccaa
      781 atttgccatc ggaacttgaa aggcaaagac tatcttctcg cacaaaatat gacttagaaa
      841 tgatacaaga attaggctat tgctcaggca tcgaaaacta ctctagacat ttagaaggga
      901 ggaaccccgg acaaccgcct tattgtttac tggatttttt tggtgatgat tttctgatcg
      961 ttatagatga gtctcacgta accatcccgc agctccacgg tatgtacaat ggagaccaca
     1021 ctcgtaagaa gatgttgatt gattacggat ttagacttcc aagcgctttc gacaatcggc
     1081 ctttaaggtt tcaagaattt gaaaaatatc ttcaaaatgt aatttttgtg tctgcgacac
     1141 cgggaaatta tgagctaaat ttaagctgcc aagtagttga acaactagtt cgacctactg
     1201 gcctagtcga ccccaaggtt gagatccgac ccactaagaa tcagatacaa aatctgataa
     1261 cagaaattag tatgaggaca aaaaagaatc agagaacgtt agtcactact ttaaccaaga
     1321 gaatggcaga agacctagcg gaatttttgg ctaaatcgga tgtaaaagtt cgttacatgc
     1381 attctgaaat tgaaggaata gagaggactg agttaatacg tcagctccgt ttaggcgaat
     1441 tcgatgtgtt aataggcatc aatctcctta gagaaggttt agacattcca gaagtagcat
     1501 tagtagctat actagatgca gacaaagagg gattcttacg taacgataca agtttgatac
     1561 aaacctttgg acgtgcagct agaaatatag atggagctgt aataatgtat gctgatcagg
     1621 ttactcaatc gattatagcc gcaatagcag aaacagacag aagacgcgag acgcagataa
     1681 gatacaataa agataatgca ataagtccta aatcagtggt caaatctatt cctgaaagag
     1741 caactgataa tcgtgttctg ttattgaata caaaatccat gaccaaatcg gatttgataa
     1801 agctttcttt ggagaccgag gcatccatga aaaaattcgc agaagagcta gattttgaaa
     1861 aagccataga atttagggag aaattatcga ctataaagaa agccattgga gaaccaatgc
     1921 tttctgaggt tcattagaga tatgcatgac aaaataatta tcagaggtgc acgtcagcat
     1981 aacttaaaaa atatagatct tgaaattccg aaaaataaat tagttg
//
LOCUS       DATLQL010000454         1007 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2246585, whole genome shotgun sequence.
ACCESSION   DATLQL010000454 DATLQL010000000
VERSION     DATLQL010000454.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1007)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1007)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1007
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2246585"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..194)
                     /locus_tag="VNB68_04720"
     CDS             complement(<1..194)
                     /locus_tag="VNB68_04720"
                     /inference="COORDINATES: protein motif:HMM:NF012234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HVD36685.1"
                     /translation="MLAKAVANESNAHFISISGPEIMSKFYGESEARLREIFKEAKEK
                     APSIIFIDEIDSIAPKREVTG"
     gene            complement(348..929)
                     /locus_tag="VNB68_04725"
     CDS             complement(348..929)
                     /locus_tag="VNB68_04725"
                     /inference="COORDINATES: protein motif:HMM:NF024853.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HVD36686.1"
                     /translation="MTKRKAAENIKLILPVSESRDHIQGPVTAPITLVEYGDYECPYC
                     AQAYMITKEIQERLGSKLRFAFRNFPLTKVRPHSYKAAIAAETAAAQGKFWEMYDYLF
                     KHGQVASDDNLRQSAANLGLNVTRFDREFLDLTYSRHVDEDVQSGKDSVVKSTPTFFI
                     NGDRYNGAWDLDSLLSALDEEAVFSWRQTNSSI"
BASE COUNT          280 a          205 c          175 g          347 t
ORIGIN      
        1 cctgttactt ctctctttgg agcaatggag tctatttcgt caatgaaaat tatagatggt
       61 gccttttcct ttgcttcctt aaagatttct cttaagcgcg cttcagattc tccataaaac
      121 ttactcatta tttctggtcc ggagatactg ataaagtgag cattactttc attggctact
      181 gcttttgcca acatttttac ctgtacccgg tggaccgtaa agtagaatca tcacctcatg
      241 cagtcaaaaa gtagtcaatt aaattgatat ctcaagtcat aactggacga tttgccagga
      301 atgtaaaatt ttcttggatt atattctcag aaataaggca tctaatttta tattgaacta
      361 tttgtctgcc tccaactgaa cacagcctcc tcgtcaagtg cactgagaag gctatccaga
      421 tcccaagcgc cattgtaacg atctccattg ataaaaaatg ttggagtact ttttaccaca
      481 ctgtccttac cactttgtac gtcctcatct acgtggcgac tatatgtgag atcaagaaat
      541 tcacgatcga atctagtaac atttaatcct agattggcag cagactgtct caaattatca
      601 tcactagcta cctgcccatg tttgaataaa taatcataca tctcccagaa ctttccttga
      661 gcagcagcag tttctgctgc tattgcagcc ttatatgagt ggggacgaac tttggtaagg
      721 gggaaattac ggaatgcaaa acgtaattta cttcctaaac gttcttgaat ttcttttgtg
      781 atcatatagg cctgggcgca atatggacat tcataatctc catattctac caaagttata
      841 ggtgcagtta cgggtccttg aatatgatcc cttgattcgc ttacaggtaa tatcagtttt
      901 atgttttctg ctgcttttct tttagtcatg tttacgtctc gttatcatat attttaaaga
      961 tttaaagacg tcattgtcga tatattaaat tgatgtaggt ttatctt
//
LOCUS       DATLQL010000455         1489 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_827881, whole genome shotgun sequence.
ACCESSION   DATLQL010000455 DATLQL010000000
VERSION     DATLQL010000455.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1489)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1489)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1489
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_827881"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
BASE COUNT          418 a          310 c          283 g          478 t
ORIGIN      
        1 aaatacacgt gacgcgccag agagttttac aaaggaaatc tgacggcgtc accctttacg
       61 gtgatcaagg ccatcacggt ttaagttaaa gagagacggc gtcaagcact attctgacgg
      121 cgtcaaccct tgataggcca gagcggattt tagaggatta aaaagggacg gcgtcaagaa
      181 ggccatcaag aaaccctaaa cgcggcgagg tgacggcgtc aagctctata acgtgacgcc
      241 gtcagatctg ttttcctata tatactttca taatttttag tcattagtgt gcaactttgt
      301 gaggagaaac cctaagacga tttttctgcc atttttaagg gttttatacc cttggatctc
      361 ccatgttcaa ttgaagaaaa gtaatcaatt aatcattcaa tatgtctatg tgttgtttga
      421 ttatatcttg ttcttgtctt ttatttaaca tgctatgcta gatttatctt gtgtttgctt
      481 agatctaatg aaacctaact attgattatt ggttgttggt gtgttattaa ttgtattgga
      541 tgattgttta tcgatgttag gcttaagaaa actggctaac ctcctatacg gtaacttgct
      601 tgaacgtctt aagaaacatg aaccaatgcg tactaaggtt tttatggttg tatttaatgc
      661 atgagcgaat tctagtgatc ccatgttagg agcttcttag ccggctcgac ataggagtga
      721 agtaggagct tatagagttg gggaagtacg tacgccaccc cacgattggt attaaggaat
      781 acacctgtca tccacgcaat taatacacac taatcaaccg gtaaaagata gttagggagt
      841 aaggaaatct aagtaaacac atttctctcc acataagttt cacaaccctt ttctttttct
      901 gttattttta ttttatttgc attcgtagta acttgagtta gttgactagc aactaattcc
      961 gcccactcct tcaaacccga gattttactt gcttttataa aaatataaaa aatacaaaaa
     1021 gaatcttccc tcacccttag acctattaga gtagtttttc aatcctaacg acactattcc
     1081 cctagagaac gatcaatccc ccggtacttg ccactacact atactacatc ggtcaggtac
     1141 actgcctggt ggggattgca agcctcttga gatccctcga gaggtaaaac ctgttgtaag
     1201 gtcgcaaaac cacgcatcaa gtttttggcg ccgctgccgg ggaatagtta ttgtttaggt
     1261 tgaattttta tttctattag gtctactcac tagattcctt tctagtgaga tttttatttt
     1321 atttttctag attttctgta gtctatctat tttcttcgtg tctttgttcg taaccattac
     1381 catccgacat catggaagat ggtaatatcc ttaatcccca cgacacacca ccacaacaac
     1441 caccaccacc tcctagagcc cgtactttag gagagtattc ccgccctag
//
LOCUS       DATLQL010000456         1524 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1712528, whole genome shotgun sequence.
ACCESSION   DATLQL010000456 DATLQL010000000
VERSION     DATLQL010000456.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1524)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1524)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1524
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1712528"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1341
                     /locus_tag="VNB68_04730"
     CDS             <1..1341
                     /locus_tag="VNB68_04730"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HVD36687.1"
                     /translation="GLGAEIIKALKENRFEAPFPIQQEAIPFILRGIDVIGQAHTGTG
                     KTAAFALPILTKIKRRGPIQALVLVPTRELAVQVTAEINKFAKYTGVRTLSIYGGQNI
                     NIQFDHLRKGVQILVATPGRLIDHVKRQSIHLDDVNFVVLDEADRMLDMGFVDDIKFI
                     LSCMSKEDRQTNLFSATMPSEVLKLAQEYMDNPKEIRLNEELSLDTIDQAYLIIHEKE
                     KFKHLCNFIRNKNQKQTIVFAATKQRTHRLASELQEEGFRAITMHGDLSQRQRDSVMY
                     KFRKGFEDILVATDIAARGIDVPAVGHVINYDIPADPLIYFHRIGRTARAGTAGKAIS
                     LVSQDRVEDFGRILRTTEKPIHKLNEEMGIEVPSVPQYVPRDFRQRRSSNNRRYNGYS
                     YRNNTYPSYYGYRSRSSHVGEIQSHYTSRNRSSNNRYGADYGHRDTTKTMSNEM"
BASE COUNT          550 a          260 c          333 g          381 t
ORIGIN      
        1 ggactgggtg ctgaaattat taaggcactc aaggaaaata gatttgaagc tccttttcct
       61 attcaacagg aggcaatacc atttatttta agaggtatag acgttatagg acaggcacat
      121 accggtactg gaaaaacggc agcttttgca ctacctatat tgaccaagat aaagcgcagg
      181 ggcccaatac aggctctagt actagttcca acaagagagc tagcagttca agtaactgct
      241 gaaattaaca agtttgcaaa atatactggg gtaagaactc tatccatata tggtggtcaa
      301 aatatcaata tccaatttga tcatttaagg aaaggcgttc agatactagt cgcaaccccc
      361 ggcaggctaa tagaccatgt taaacgacaa tccatacatc ttgatgacgt aaattttgtg
      421 gtacttgacg aggcagatag aatgcttgac atgggttttg ttgacgatat caagtttatc
      481 ttgtcttgca tgagcaaaga agacaggcag acaaatttgt tttcggctac tatgccctca
      541 gaggttttga aacttgccca agaatacatg gataatccaa aggaaataag acttaatgaa
      601 gagttgagtc ttgacactat agaccaggct tatctcatta tacatgaaaa agaaaaattc
      661 aagcatttat gtaattttat cagaaataaa aatcagaagc agactatagt ttttgcagca
      721 acaaagcaaa gaacacatag acttgcttcg gaattacaag aagaaggatt cagagctatt
      781 acaatgcacg gcgatttgtc acaaagacaa agagatagtg taatgtacaa atttagaaaa
      841 ggatttgagg atatccttgt ggcaactgat attgctgcaa ggggaataga tgtgccggca
      901 gtaggacatg taataaacta tgacatacct gcagatccat taatctactt ccaccggatt
      961 ggaaggacag caagagctgg cacagcaggt aaggcaatct cattagtttc tcaagacaga
     1021 gttgaggatt ttggaagaat tcttagaacg acagaaaaac ctattcataa gctaaatgaa
     1081 gagatgggaa tcgaggttcc ttcggttcca caatacgtac ccagggattt tagacaaaga
     1141 cgcagcagta ataataggag gtataacggg tatagttaca gaaacaatac ttaccctagc
     1201 tattatggtt atagaagtag gtccagccat gtcggagaga tccagagcca ttatacgagt
     1261 cgtaatagaa gcagtaataa cagatacggt gcagattatg ggcacagaga tactactaag
     1321 acgatgtcca atgaaatgta agatgtcaat agagggaagt gcttctgggg ttataatgga
     1381 taaggcactc tcaagagtga gagaagactt tataatacag taacacagca cagcgaaaat
     1441 aagttgacca aagaatagtg aatccacaga ttagtgaatc cacagattag gcgtcaaaaa
     1501 acatcagata aacaaaattt tgct
//
LOCUS       DATLQL010000457         1143 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1357550, whole genome shotgun sequence.
ACCESSION   DATLQL010000457 DATLQL010000000
VERSION     DATLQL010000457.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1143)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1143)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1143
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1357550"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1143
                     /locus_tag="VNB68_04735"
     CDS             <1..>1143
                     /locus_tag="VNB68_04735"
                     /inference="COORDINATES: protein motif:HMM:NF012377.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cellulase family glycosylhydrolase"
                     /protein_id="HVD36688.1"
                     /translation="KLAPYLPIAPLDIRNINQLDLKKEIDSVKPELDLLKQLGFNIIR
                     LLISWKAIEPKPNPNPDEILPEGRQYLGLVKEIIDTLYARGLYVLLDFHQDIAHEIYG
                     GDGFPDWALAIDEKHKRPQPSNLRDKKWQVAYLVNKLVKNTLQSFWQNNLTNKEAGLQ
                     NYPVRTHLEKTIGQTLKFFKSSASNSQKEEGEPAILGVEPFNEPHPVGLQDFEQKLLF
                     QYYLNVEEEVRKFDDRIFLFIEPGVDWTLSERGDKPKSAPSPFSIKRTFNLGFIRNTM
                     VEGKVLTKNINTYLPKDSSSLERLRNRGVLSFHYYEPLAILGAFAKIPDNMPRYKQEW
                     PDIFAQMVEAATERDLIPFMTEFGGFQGAEQIRDFIDLQFVQIESN"
BASE COUNT          388 a          221 c          221 g          313 t
ORIGIN      
        1 gtaaacttgc gccatatctt ccgattgcac cactagatat ccgaaatatc aatcaacttg
       61 atttaaaaaa agaaattgat tcagtaaaac ccgaattaga tctcctaaaa cagcttggat
      121 ttaatattat tcgattatta atatcgtgga aggcaatcga gccaaagccg aatccaaatc
      181 cagatgagat cttgcctgag ggtagacaat atcttggtct tgtaaaagaa ataattgata
      241 cattgtatgc aagaggttta tacgtacttt tggattttca tcaagacata gcccacgaaa
      301 tctatggcgg tgatgggttt ccggattggg cattagcaat agatgaaaaa cataagcgtc
      361 ctcagccttc aaatctaaga gataaaaaat ggcaagtagc atatcttgta aacaaattag
      421 taaaaaacac cttacaatca ttttggcaaa acaacctaac gaataaggaa gcagggcttc
      481 agaattatcc ggttaggacc catctagaaa agaccatagg acaaaccctc aaatttttca
      541 aatcatctgc aagtaatagt caaaaagaag aaggagagcc ggctattttg ggagttgagc
      601 catttaatga gcctcatcct gtcgggcttc aggactttga acagaagctt ctatttcaat
      661 actaccttaa cgtagaagaa gaagtcagga aatttgacga caggatattt ttgtttattg
      721 aaccaggtgt agattggact ctttctgaac gtggagataa gccaaaatca gccccttctc
      781 cttttagtat aaagcgcaca ttcaatttag gattcatacg taacacgatg gtagaaggaa
      841 aggtacttac caagaatatc aatacttatc taccaaaaga ttcaagctct cttgagagat
      901 taaggaatcg tggtgttttg tcattccatt attatgaacc gttagccatt cttggcgcct
      961 ttgcaaaaat tcctgataac atgcctagat acaagcaaga gtggcctgac atcttcgccc
     1021 aaatggtcga agccgcaact gagcgcgacc ttattccatt tatgacagaa tttggcggat
     1081 ttcaaggagc ggagcagata cgtgacttca tcgaccttca atttgttcaa atagaatcca
     1141 acc
//
LOCUS       DATLQL010000458         1610 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_293342, whole genome shotgun sequence.
ACCESSION   DATLQL010000458 DATLQL010000000
VERSION     DATLQL010000458.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1610)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1610)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1610
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_293342"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(640..>1610)
                     /locus_tag="VNB68_04740"
     CDS             complement(640..>1610)
                     /locus_tag="VNB68_04740"
                     /inference="COORDINATES: protein motif:HMM:NF013543.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HVD36689.1"
                     /translation="ALFFDFVNGFHDSANAIATVVGTRVLRPLYAVSIAAAANFVGPF
                     VFGTAIATTVGKGIIKPEIATVEVILAGLIGAIVWDLITWYFGLPSSSSHALIGGLVG
                     SALIAGGLNVLVYSGIEKVLIFMIVSPITGFIVAFALAILMMYFLRDSKPSMVNHIFG
                     KLQIASSTFFSLAHGANDGQKTMGVITALLIASGYLSSDKFVVPGWVILSAATAIGAG
                     TFFGGWRIVKTMAFRITELKPYQGFCAETGGGVILTAMAALGIPVSTTHAISGAIMGV
                     GSTRRLSAVRWGVGKRIVSAWLITIPASAAIAALISLIFKSITLLH"
BASE COUNT          526 a          331 c          281 g          472 t
ORIGIN      
        1 aatcagaatc gtagattctt acgttgatat tcctgtactt ctcttaacat ccgataagga
       61 actatatgaa aggctacctg gaaaggcagt atttatcaaa tcaaaaggaa atagtaatgg
      121 agtaagaata atttacaatc ctgtaaagcg caggtttaca agattatagg ctaataaaat
      181 gtaccttgaa tcatggctgc aaagatgatt aactcttatc aataaattag gataaactaa
      241 agatagacaa tagttagcta agcagccaga aatcataata cttggtttat gattttgcga
      301 taatctgcat ctttcttctg aagctatgaa ctcactacca ttaggatgat tactccaaca
      361 tactgctacg tttttcatta atacttacga gtctagaatg gtataatata tgctggacct
      421 aaataatgat atggggcagt tgacttacag aatatgagtt catattcaat ttatccaaag
      481 accttttcat aaaaaaattc ttttcctgtg taagctttgg tattattgtc aagctaacta
      541 tggaagctcc agattatata actatgcgac atcaacttag tactttaata tggcgttcct
      601 ttgtcgggct acaactgttc gtcaatatca aaacaggtat tagtgtaaaa gtgtaatact
      661 tttaaagata agtgagataa gagctgctat tgctgcgctg gctggtatgg tgataagcca
      721 agcagaaaca atgcgttttc caactcccca tctaacagct gacaatctcc ttgttgagcc
      781 cactcccata atagctcccg atatagcatg ggttgtgctc acaggtatcc ctaatgcagc
      841 catcgcagtt aggattacac ctcctccagt ctccgcacaa aatccttgat aaggcttaag
      901 ttcggtaatt ctaaatgcca tagtttttac aatcctccat ccaccaaaga atgttcctgc
      961 tcctattgct gttgccgcac taaggataac ccatcctgga acaacaaatt tatctgacga
     1021 taaataacca ctcgctataa gcagcgctgt aattactccc attgtttttt gtccgtcgtt
     1081 agctccatgt gctaaagaaa agaatgttga agaagctatc tgaagctttc caaaaatatg
     1141 gttaaccatc gatggttttg aatctcgcaa gaaatacatc atcaatattg caagtgcaaa
     1201 tgcaactata aatcctgtga ttggggaaac gatcatgaag attagaacct tttcaatacc
     1261 tgaatatacg agaacgttca atccgcctgc aattaatgct gagcctacta agcctccgat
     1321 gagcgcatgg ctgctcgaag aaggaagacc aaaataccaa gtaatcaaat cccaaactat
     1381 tgctccaatt agacctgcta aaattacttc gacagtagca atctcaggtt tgataattcc
     1441 ctttcccact gttgttgcta ttgcagtgcc aaatacaaat ggtcccacaa agttcgccgc
     1501 cgctgctatg cttactgcat ataatggtct gagaactcta gttccaacta ctgttgctat
     1561 ggcattagcg gaatcatgaa aaccattaac aaaatcaaag aataaagcag
//
LOCUS       DATLQL010000459         1470 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1357738, whole genome shotgun sequence.
ACCESSION   DATLQL010000459 DATLQL010000000
VERSION     DATLQL010000459.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1470)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1470)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1470
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1357738"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            169..483
                     /locus_tag="VNB68_04745"
     CDS             169..483
                     /locus_tag="VNB68_04745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36690.1"
                     /translation="MISRLSYFGGNAGGSVDKSKYEHLTMSIKQTVLERAHYRCQKCS
                     VKFSGSTHPQFEHINGSRKDNRPNNLRSLCPECFKPVAKKENRKGVLGNISFSLGEIL
                     KR"
     gene            complement(771..>1470)
                     /gene="tfb"
                     /locus_tag="VNB68_04750"
     CDS             complement(771..>1470)
                     /gene="tfb"
                     /locus_tag="VNB68_04750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018540.1"
                     /note="stabilizes TBP binding to an archaeal box-A
                     promoter; responsible for recruiting RNA polymerase II to
                     the pre-initiation complex; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transcription initiation factor IIB"
                     /protein_id="HVD36691.1"
                     /translation="KGLSTLIGRTNKDASGQGLNAASRTMMERLRTWDLRTQANSPTD
                     RNLRNAFNQLNTLKDKLMLPDAAVEKTAYIYRKVQERGLVRGRTIAAVLSAVVYIVCR
                     ETAIPRTLDDIAGLTNIKQKELARVYRLIVLELDLKIPMVDKMKCIVKVANKAMLSEK
                     TKREAMKIMNVVTKKGISAGKDPMGLAGSIIYLCSTNNGENKNQIDIAEAAGVTEVTI
                     RNRLKEIKKQLLQN"
BASE COUNT          422 a          292 c          271 g          485 t
ORIGIN      
        1 tcactaagaa tggcgaggtg attcctgaac ctttacgaat tgctgacgct aactcaaaga
       61 attgtttgaa ttttttgtag ctcttatatt acatattagg tttgtcaatt aactgaagtt
      121 gaatcacagg ataaaatttc cacaagaaat aagttaaggt tgtgttacat gatatccagg
      181 ttgtcgtact tcggtggaaa tgcaggggga agtgttgata agagcaagta tgaacatctc
      241 acgatgagta taaaacaaac cgtactggaa agagcacatt atcgatgtca aaaatgctca
      301 gtaaaattta gcgggagtac ccatcctcaa tttgagcata tcaacggatc caggaaggat
      361 aatagaccta ataatttacg ctcgttatgt ccagagtgtt tcaagccagt tgcaaagaag
      421 gaaaatcgga aaggagtact cggaaatatc agtttttcgt taggtgaaat attgaaaagg
      481 taaagataga acgaataatt aagctaatgt taccagagtc ctgataccaa cttcgcatct
      541 tgtggatatc gtgagacaaa ataatcattg aggaaagcta gtaaaataat atttcatcta
      601 agtagattca agagtatata caattggcgc agatactaga ctctgagaaa agttcttatc
      661 gttaaagcgg caactgcttt cacgctgctg tagcaatcca cgcttacatt cgaaagtact
      721 aagaatatat gattcaagga tttggagaag taaaactttt ttttcctgag ctaattttga
      781 agaagctgtt tctttatctc cttcagtcta tttctgatag ttacttctgt tacccctgct
      841 gcctctgcaa tatctatttg attcttattt tccccattat ttgtagaaca cagatagata
      901 atcgatcccg ccaaccccat aggatcttta ccagctgata tccctttttt ggtaacaaca
      961 ttcatgatct tcattgcttc cctttttgtc ttctcgctca acatagcttt atttgcaact
     1021 ttcacaatgc atttcatctt atccaccatc ggaattttca agtctagctc aagtacgatt
     1081 agtctatata ctctggcaag ttctttctgt ttgatgttag taagtcctgc tatatcatct
     1141 aacgttcttg ggattgccgt ttctctacat acgatgtaca ccacagcaga taagaccgcg
     1201 gctattgttc ttccccgaac gagacctctt tcctgcactt ttcgatatat gtatgctgtc
     1261 ttttcaactg ctgcgtctgg tagcattagt ttatccttta atgtgttcaa ttgattgaat
     1321 gcattcctaa ggtttctgtc cgttgggcta ttggcctggg ttcttaaatc ccaggttctt
     1381 agcctctcca tcatggtacg tgatgcagca ttcaacccct gtccgctggc atctttattc
     1441 gtccttccaa ttaaagtcga tagaccttta
//
LOCUS       DATLQL010000460         1106 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2428384, whole genome shotgun sequence.
ACCESSION   DATLQL010000460 DATLQL010000000
VERSION     DATLQL010000460.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1106)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1106)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1106
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2428384"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..866)
                     /locus_tag="VNB68_04755"
     CDS             complement(<1..866)
                     /locus_tag="VNB68_04755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mRNA surveillance protein Pelota"
                     /protein_id="HVD36692.1"
                     /translation="MIIKDASGSAGKAYFLIPEDADDLFTLRRTIQNGDLVIADTTRV
                     IKQVKEYARPDKGERVKVRISLEVDKTSLDNVVDRLRITGIITNTDNEIVSKGTHHSL
                     IAQVGYSIILDKQRKWKDTEINILKKAIEGVNFILIAIDRQEAAVAKVSGTNLKIIPN
                     IYSGQTGKRYQQAIKNNPNIEIFFEDVAKTIRSILDSDNHSKDRIVLFGPGETKRRFY
                     NYLLNEKQQIEKETLSLVDGVDVAGEDGIFVFLRSSAIKEAMGSSKLAAVSSILDEVM
                     QLVHKGEKKYVMG"
     gene            complement(910..>1106)
                     /locus_tag="VNB68_04760"
     CDS             complement(910..>1106)
                     /locus_tag="VNB68_04760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36693.1"
                     /translation="NTQLKWRQTRKKSGKVHGEASANALVNLVESGVLTQEWVDNYLK
                     LSQEKDNTSSSSSVSNKKAV"
BASE COUNT          282 a          233 c          180 g          411 t
ORIGIN      
        1 cccatgacat actttttttc acccttatgt acaagctgca ttacttcgtc tagtattgaa
       61 gatacagctg caagtttact tgaacccata gcttctttaa ttgctgatga tctaagaaaa
      121 acaaaaattc cgtcttcgcc agccacatct actccgtcta ccaatgataa cgtctctttt
      181 tcgatttgtt gcttttcatt aagtaaataa ttataaaatc tacgtttagt ttcgcctggt
      241 ccaaagagaa ctattcgatc tttactgtgg ttatcgctat caagtatgct tcgaatcgtc
      301 ttagcaacgt cttcaaagaa gatctcaata tttggattgt tttttattgc ctgctgataa
      361 cgtttaccag tctgacctga gtagatattt ggaattatct ttaaattggt acctgagacc
      421 tttgctactg cagcttcctg cctatcaatt gcaatcaaga tgaagtttac accctctatg
      481 gctttcttta aaatattaat ctctgtgtct ttccattttc tctgtttatc aaggattatt
      541 gaataaccca cctgtgctat aagggagtga tgtgttccct ttgatacaat ttcattgtca
      601 gtgtttgtta ttataccggt tattcgcaat ctgtcaacta cattgtcaag gcttgtttta
      661 tcaacttcaa gcgaaattcg tactttgaca cgctctccct tgtctggtct tgcatattcc
      721 ttgacttgct ttatgactct agtagtatca gcaatcacaa gatccccatt ttgtatcgtt
      781 cttctaagag taaataggtc gtctgcatct tccggtataa gaaagtaagc tttgccagca
      841 gatccgctag catctttaat aatcatgagt aaaatttcgc tttgtcttta tcacggcaaa
      901 cttcatcttc tatactgctt ttttattact aacagatgaa gaggaagaag tgttgtcttt
      961 ttcttgtgat aattttagat agttgtcaac ccattcttga gtcagtacgc cggattccac
     1021 taggttcacc aatgcgttag cagaagcctc gccatgaact tttcctgact tttttctcgt
     1081 ttgcctccat ttgagttgag tatttc
//
LOCUS       DATLQL010000461         3840 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_650311, whole genome shotgun sequence.
ACCESSION   DATLQL010000461 DATLQL010000000
VERSION     DATLQL010000461.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3840)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3840)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3840
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_650311"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            105..1037
                     /locus_tag="VNB68_04765"
     CDS             105..1037
                     /locus_tag="VNB68_04765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36694.1"
                     /translation="MVCPSQGMNLTIVSNLVMDTILGEDGVQTESIGGPPCYAGLTST
                     NLGFNINIVTRFGKNLKDEYLHILKRGGITLEPSGMSSLPTTKFLIQTLGRSRKLTLE
                     SNCEKIRLSDVEHIKTDGWLISPVLDEVPETVLEYIKNNPGKKNFVMLDPQGYTRMVD
                     PSGMIEIKNETHLNLKNINAIKLDTAELGSMTGGVFGLSGMKKIHTHYGVKFVIHTEE
                     GTIHVSDTNTHFWLNLPHVKIPDSTGLGDIISSAFSCTFMRENDVVWAFCFAVGAAAA
                     ALDSKCRGVEKIPKRSKVEENASYYYNTLKYEKL"
     gene            1097..2098
                     /locus_tag="VNB68_04770"
     CDS             1097..2098
                     /locus_tag="VNB68_04770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003951 - NAD+ kinase activity [Evidence
                     IEA];
                     GO_process: GO:0006741 - NADP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+)/NADH kinase"
                     /protein_id="HVD36695.1"
                     /translation="MKIAISGQDWREGSLGYKIKGILDDLGVESKILKDGDSPSAHNA
                     DIVLVAGGDRVILDHSHKVRDFSVPVLGIYESDSTGFLGQVDVSELESAVMRLKKGDY
                     EVDEVFRLSVKVDGKEVEPVLNDVALFPRKSATLLEYVLKVNHGDLWHDNSDGVIIST
                     PIGSTAYSMSAGGPMVLQKSQVFIVVSVNSLDNTRRPLIVPNDSNLEITDILCRYLCD
                     VVLDGGKRVTVRKKLECSKHDYPTRFVRMIKDSSAKIIEKKVKLAEELLNMPPSAKLI
                     LKTMEYEGALSQKDLCKKTMLPERTIRLSLSHLLQRGYVRKKTSLRDARQKIYELRI"
     gene            complement(2103..3725)
                     /locus_tag="VNB68_04775"
     CDS             complement(2103..3725)
                     /locus_tag="VNB68_04775"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003883 - CTP synthase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006241 - CTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HVD36696.1"
                     /translation="MRIRSDRQITPKFIFVTGGVMSGLGKGVITSSTAKLLQLLGLKV
                     SCVKIDPYVNYDAGTMNPIAHGEVFVTDDGGECDMDIGNYERFLDISMTEDHNITTGR
                     IYSEVIKAEREGKYLGQCVQIIPHVTDTIKDKLRKLATGRDVLVVECGGTVGDIESLP
                     FLEALRQMQLECGDSGALFIHVTLAPILDVVGEQKTKPTQHSVQELRRIGIQPYILAV
                     RCKNPLNLEAIHKISMFASIKEDCVISCHDAPSIYHVPEILEKQGIVKVIAQKLNLKN
                     SKVGWENWKHVTSGYLNCNGRVKIAIVGKYVSLPDSYVSVYQALLHASAKLHKKLSIE
                     WIESEIFETKKEETGLLGKFDGILVPGGFGKRGSEGIIRAINFVRKRNIPFLGICFGF
                     QLAIVEFARNQCGIIDATSEEFNPKKNDPVVEFMPEQKNVSNYGGSMRLGKHRITIVP
                     RTLSSRIYERPMIERRHRHRYEFNQHYRKPIEENGIVLSGHSDYGRRIEMLEIPDHRF
                     YLALQYHPEFTSRPGKPEESFDAFVKACVYRK"
BASE COUNT         1158 a          769 c          765 g         1148 t
ORIGIN      
        1 attgacttaa gaaaaggaca gcagatcgct cgcagaatca ctaaaggtct tcattccttc
       61 aaatgaacga taattgattc ttgagcatgg agatatatat tgaaatggtg tgtccttcac
      121 agggaatgaa tctaacaatt gtgtccaatt tagtcatgga cacgattctg ggtgaggatg
      181 gagtccaaac agaaagtatc ggtggaccac catgttatgc gggtctcaca tcaacgaacc
      241 ttggttttaa tataaatatt gtaactagat ttggaaaaaa cttgaaagat gagtacttac
      301 acattctcaa gagagggggt attacattgg agccttcagg catgtcgagc ctaccaacta
      361 ctaagtttct catccaaact ctcggacgat ctaggaagct tacacttgaa tcaaactgtg
      421 aaaaaataag gttaagtgat gtagaacata taaaaactga tggatggctc ataagtccag
      481 tccttgacga agttccagag accgtactgg aatacataaa aaacaatccc gggaaaaaaa
      541 attttgtgat gctagatcca caaggatata caagaatggt ggatccttcg ggtatgattg
      601 aaataaagaa tgaaacacat ctgaacctga aaaatataaa tgcaatcaag ctggatactg
      661 cagaacttgg ttctatgacc ggcggcgtct ttggactctc tgggatgaag aaaattcata
      721 ctcattatgg tgttaaattc gtgatacata cggaagaagg aaccattcac gtctctgaca
      781 ctaatactca tttttggttg aatctccctc atgttaaaat acctgattcg acagggctag
      841 gggatattat ctcgtctgcc tttagttgca cctttatgag agagaatgat gttgtatggg
      901 cattttgttt tgcagtcggt gccgccgcag cagcattaga ttccaaatgt cgtggagttg
      961 aaaaaattcc aaaaagatca aaagttgaag aaaatgcctc atactactat aatacattga
     1021 aatacgaaaa attataaaaa aagttatcca ttttagattt aaattgcggt agcatatcgg
     1081 tgttattatt ctgaaaatga agatcgccat ctcaggtcag gactggaggg agggcagttt
     1141 aggctataag ataaaaggaa ttttagacga tcttggcgta gagtcaaaaa ttcttaagga
     1201 tggagatagc ccctcagcac acaatgcgga cattgttcta gttgctggag gcgatagagt
     1261 gatactcgat cattctcata aggtacgtga tttttcagtt ccggtactag gcatttacga
     1321 atctgattcc acaggtttcc ttgggcaggt agatgtaagc gaattggaat ctgcggtcat
     1381 gagattgaag aaaggagatt acgaggttga tgaagttttc agactctctg tgaaggtaga
     1441 tggaaaagaa gtggaaccag tacttaatga tgttgccctt ttccccagaa aaagtgccac
     1501 gttgttagaa tatgtactta aagtgaacca cggtgacctc tggcatgaca atagtgacgg
     1561 tgtcatcatt tcgacaccaa ttggctcaac tgcatatagt atgtccgctg gcggaccgat
     1621 ggttctacaa aaatcccaag ttttcatagt cgtttccgtg aattctcttg acaacacacg
     1681 caggccactg atcgttccaa acgattccaa cttagagatc acggacatcc tgtgtaggta
     1741 cttgtgcgac gtagtactag atggaggcaa aagagttact gtacgtaaga aactagaatg
     1801 tagcaaacac gattatccta caagatttgt aaggatgata aaagattctt cagcaaagat
     1861 aattgagaaa aaagtaaaat tggcagaaga gctacttaat atgccaccaa gcgcaaaact
     1921 aatcttaaaa acaatggaat atgaaggtgc tttgagtcag aaggatctat gtaaaaaaac
     1981 catgctgcca gaaagaacaa taagactttc cttaagtcat ctattgcagc ggggctacgt
     2041 cagaaaaaag acgtcgctaa gagatgcaag acagaaaata tatgagctga ggatttagag
     2101 gtttattttc gataaacaca ggcttttaca aacgcatcaa atgactcttc aggttttcca
     2161 ggcctacttg taaattctgg gtgatattgg agtgctaggt aaaatctgtg gtctggaatt
     2221 tccaacattt caatccgcct cccgtagtca gaatgacctg acaatacaat tccattttct
     2281 tcaatgggtt ttcgataatg ctgattgaat tcatatctgt gtctatgtct gcgctcgatc
     2341 attggcctct cgtagatgcg gctagaaagt gttctaggca caatagtaat cctatgtttc
     2401 cccaatcgca ttgaacctcc atagttactt acattcttct gttctggcat gaattcgacc
     2461 actggatcgt tctttttagg attgaattct tcagaggtcg cgtcaataat tccacattga
     2521 ttccgagcga attccactat agcaagctga aagccaaaac aaattccaag gaaggggata
     2581 tttcgctttc taacaaaatt tatcgctctg attatcccct cactacctct ttttccaaat
     2641 ccaccaggaa ctaatatccc atcgaatttc cccagtaatc ctgtttcttc ctttttggtt
     2701 tcaaatattt cagattctat ccattctata ctcaactttt tgtgtagctt tgcagaagcg
     2761 tgtaatagtg cctggtatac actaacgtaa ctatctggga gactaacgta cttgcctact
     2821 atggcaattt tgactctacc gttgcagttc aaatagccac tggtaacgtg tttccaattt
     2881 tcccacccaa cttttgaatt cttcaaattt agcttttgag ctattacttt tacaattcct
     2941 tgtttctcta ggatttcagg tacatgatat attgaaggtg catcgtgaca agaaatcaca
     3001 caatcttcct taatactcgc aaacatggat atcttatgta ttgcttcgag atttagaggg
     3061 tttttgcatc tgactgccag aatgtacggt tggatcccta tcctccgtaa ttcctggaca
     3121 ctatgttgtg tgggtttagt tttttgttca cctacgacat caagaatggg ggctaatgtt
     3181 acatgtatga atagtgcacc agagtcgcca cattccaatt gcatttgtct gagagcttct
     3241 agaaaaggca agctctctat atcaccgaca gttcctccgc attctacgac caaaacatca
     3301 cgacctgtcg ccaactttct tagtttgtcc tttattgtat cagttacgtg aggtattatc
     3361 tgcacacact gtccaaggta ttttccttcg cgctcagcct taatcacttc agagtatatc
     3421 ctgcctgtgg taatgttgtg gtcttcagtc attgaaatat ctagaaaccg ctcatagttt
     3481 cctatgtcca tgtcgcattc cccgccgtca tctgttacga atacttctcc atgggctatg
     3541 ggattcattg tccctgcgtc gtaattcaca tatgggtcta tctttacgca agagaccttc
     3601 agacccaata actgtaaaag cttggctgtc gatgatgtaa ttactccttt tccaagacca
     3661 gacattacac ctcctgtaac aaaaataaac ttaggggtaa tctgcctgtc tgatcttatc
     3721 cgcacataga actttgaatt ctcacctttt taatcctttt tcaactaatc gatattcaac
     3781 ttccaccaca ataaacatcg ataagtgcgt cattctttca tgaatgcgaa tataggtaag
//
LOCUS       DATLQL010000462         2136 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1004485, whole genome shotgun sequence.
ACCESSION   DATLQL010000462 DATLQL010000000
VERSION     DATLQL010000462.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2136)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2136)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2136
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1004485"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(24..302)
                     /locus_tag="VNB68_04780"
     CDS             complement(24..302)
                     /locus_tag="VNB68_04780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein SepF"
                     /protein_id="HVD36697.1"
                     /translation="MQTQKTPIYLKAITLRDMSDVASIKNHAKKQTIVILRVTPLAQK
                     DVEGLRKAIDELYGYVQSIGGDIARLGEERVVLTPPGVKIWRGAYDMK"
     gene            complement(395..1459)
                     /locus_tag="VNB68_04785"
     CDS             complement(395..1459)
                     /locus_tag="VNB68_04785"
                     /inference="COORDINATES: protein motif:HMM:NF014610.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36698.1"
                     /translation="MSSDTTTTTIENSQEFKEKKKAKAVALLSGGLDSNLAVRMMLEQ
                     GIEVEAIAIKTPFCDFDCGKGCGHRVKEVASELGVQLKTVYYGEEYLKMLKHPKYGYG
                     SGINPCIDCRGMMYKTAKEHMEKIGADFVITGEVLFQRPMSQNKRALNIIEEEAGMEG
                     KVLRPLSAKHLTPTEAEKYGLVERSKLGDIRGRSRKSQIALANYFNISDPPNAAGGCL
                     LTDPAFSKRIKDLMVHSKGIPSINDVELLKIGRHFRLSPEAKLVVGRDENENDMIEAM
                     IIAGDIKMEATEYVGPKCILRCKKYDSSILGMAARTLLRYSDAPRGNLSKVKVEINGL
                     KQDEILALPAKETELEGLRI"
     gene            1546..1731
                     /locus_tag="VNB68_04790"
     CDS             1546..1731
                     /locus_tag="VNB68_04790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36699.1"
                     /translation="MATEGIANFDTYAWFAAGLFIIGLFTVMIYEISSSKIKDFRQQQ
                     QQQKRQEVGSSSDIKRD"
     gene            1811..>2136
                     /locus_tag="VNB68_04795"
     CDS             1811..>2136
                     /locus_tag="VNB68_04795"
                     /inference="COORDINATES: protein motif:HMM:NF012492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HVD36700.1"
                     /translation="MISRKVNCLLVAPTGSGKTEAAVMPVFTQLSNHNLHHSGKIKAI
                     YITPLRALNNDVLRRIIKYAESENLRVQIRHGDTTTSDKRKIVEDPPEILITTPESLA
                     VVLTSS"
BASE COUNT          648 a          472 c          336 g          680 t
ORIGIN      
        1 gtaatgaaaa attatttatt tatttatttc atatcatatg caccacgcca tatttttaca
       61 cctggcggag ttaatacaac tcgctcctct cctagtcttg caatatcgcc accaattgac
      121 tggacatatc catagagttc atcaattgcc ttacgtaaac cctctacatc tttttgtgcc
      181 aacggagtaa ctcgtaagat aacgattgtt tgctttttgg catgattctt tatactggct
      241 acgtcgctca tatcgcgcaa agttattgct ttcaaataaa ttggtgtctt ttgtgtctgc
      301 atgaaatcca tttatcctat atcaattata gacaaatcca gaggaatcaa caaatagtca
      361 tgccggtcaa aagacgttaa cagactggtt gattttagat tcgtaatcct tcaagctcag
      421 tctcctttgc aggcaaagcc aatatttcat cttgtttaag accattgatt tcaactttta
      481 ctttggacag atttcctcta ggcgcatcag agtaacgcaa taaagttctt gcagccatac
      541 ccaatatact actatcatat tttttgcatc tcaaaataca tttaggtccc acgtattcag
      601 ttgcctccat ttttatatca ccagctataa tcatagcttc aatcatatca ttttcattct
      661 catctctacc cacaaccagc tttgcttccg gagacaatct aaaatgtctt ccgatcttta
      721 agagttctac gtcgttgata ctcggaatac ctttgctatg caccataaga tctttgattc
      781 tttttgaaaa tgcagggtct gttaacaaac atccacccgc tgcattaggt ggatcgctta
      841 tgttaaaata atttgctaga gcaatttgac ttttgcgcga ccttcccctg atatcaccta
      901 attttgaccg ctcaaccaat ccatactttt cagcttctgt aggagttaga tgttttgctg
      961 aaagaggcct taagacttta ccttccatcc ctgcctcttc ctctatgata tttaaggcac
     1021 gtttattctg actcatcggc ctttgaaata gaacctcacc agtaatgaca aaatcagccc
     1081 ctattttttc catgtgctct tttgcagttt tatacatcat tcctctacaa tctatacagg
     1141 gattaattcc agagccatac ccatatttgg gatgcttcag cattttgaga tactcctcac
     1201 cataatatac agttttcaat tgtacgccta attccgaggc aacttcttta actcgatgac
     1261 cgcaaccttt tccacaatca aaatcacaaa acggagtctt gatagcaatt gcctcaactt
     1321 caatgccctg ctctaacatc atccgaacgg ctaaattgct gtctaaacca cccgatagta
     1381 atgccactgc ctttgccttc tttttttcct tgaattcttg agagttttct atagtagtag
     1441 ttgtagtatc gcttgacact agtatcttga gattgttttg ctattattaa atttagttct
     1501 taaagcgaat atatttattg ccgccgcgcg gagaacaaag aaaagatggc aactgaggga
     1561 attgcaaact tcgatacata tgcctggttt gctgcaggat tgtttatcat tggtctattt
     1621 accgtaatga tctatgaaat atcaagttca aagataaaag actttagaca acaacaacag
     1681 cagcaaaaac gccaagaagt gggatcttca tctgatatta aaagagacta aagccgaacc
     1741 gttagttaac gaaaaatttc taaaagaagg ttttaaggaa ctaactccaa ttcaaaaaaa
     1801 agcaatacca gtgatttcaa gaaaagtcaa ctgtttgcta gttgctccaa ctggttctgg
     1861 caaaacagaa gctgctgtta tgccagtatt tacacaatta tctaaccaca atctacatca
     1921 cagcggaaaa atcaaggcaa tctatatcac tccattacgt gcattgaata atgatgttct
     1981 tcgaagaatc atcaaatatg ctgaatctga gaatcttcga gtacaaatac gacatggcga
     2041 tactactact agcgacaaaa gaaaaattgt tgaagaccca cctgagatat tgatcacaac
     2101 tcccgaatcg cttgcagtag ttctgacaag cagtaa
//
LOCUS       DATLQL010000463         1275 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1165120, whole genome shotgun sequence.
ACCESSION   DATLQL010000463 DATLQL010000000
VERSION     DATLQL010000463.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1275)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1275)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1275
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1165120"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1208)
                     /gene="gatB"
                     /locus_tag="VNB68_04800"
     CDS             complement(<1..1208)
                     /gene="gatB"
                     /locus_tag="VNB68_04800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HVD36701.1"
                     /translation="MGNIIIGLEIHCQLTSLKSKLFCFCHEDYRIFKPNSNICPICCG
                     FPGTLPLLNQKAVEHAAMISYALGSNIPEKIMFYRKNYFYPDLPKNFQITQYNLYGLT
                     SIGSAGSVYISDSKTIRIRRVQLEEDPGRLAYDSGNIHNSNHTLIDYNRSGVALVEIV
                     TEPDFTDPREVRYFLNKLSSILEHLGVCDTTLEGAVRCDANVSLKGGERIEIKNVNSF
                     REVEKALTYEISRQTSLSTRKIKINSETRHWDEQRKITRIARTKEEEQDYRYFPEPDI
                     PRVMLGNDFYTHIGKLVPELPDERLSRFKSKYTLSDHVANILINSKKLADFFESCLKI
                     YYSPVEIANWLVNDLLALIGGDETMILDNLKIEPKHMAELAKLVDEKKISRSTAKQIF
                     SEVFRTGQAPS"
BASE COUNT          358 a          266 c          230 g          421 t
ORIGIN      
        1 gagggtgcct ggccagttct gaacacttcc gaaaatatct gtttagcagt ggatctgcta
       61 attttctttt catccacaag ttttgccaac tctgccatat gtttcggttc aatcttcaaa
      121 ttatccaaga tcattgtctc gtcacctcca atcaaggcca aaaggtcgtt aaccaaccaa
      181 ttagcaattt ctacaggtga ataataaatc ttcaaacatg actcaaaaaa atctgctagc
      241 ttctttgaat tgataagaat gttcgccacg tgatccgaaa gtgtgtattt tgatttaaaa
      301 cgtgagagtc tctcatcagg taattctggt acaagcttcc ctatatgagt atagaagtca
      361 tttcctaaca tcacccgtgg gatgtcgggt tcgggaaagt accgataatc ctgttcttct
      421 tcttttgttc gggctattcg agtgatcttt ctttgctcat cccaatgtcg agtttcggaa
      481 ttgatcttga tcttgcgagt tgataagcta gtctgcctag atatttcata agtcagagcc
      541 ttttcaacct ccctgaaaga atttacattc tttatttcta ttctttctcc ccctttcaat
      601 gaaacattgg catcgcacct gacagcacct tccaatgttg tatcgcagac tccaaggtgt
      661 tccaatattg aagatagttt attcaaaaag tacctaactt ccctagggtc tgtaaaatcc
      721 ggctctgtaa ctatctctac aagtgcaaca cccgatctat tatagtcaat caaggtatga
      781 ttgctgttat gtatgttacc gctgtcatac gcgagtctgc ctggatcctc ttctagttga
      841 acccttctta tcctaatagt cttagagtcg ctaatgtaga ccgaccctgc gctaccaatg
      901 cttgtcaagc cgtataaatt atattgcgtg atctgaaagt ttttgggtaa atcaggataa
      961 aaatagtttt tacgataaaa catgatcttt tctggtatat tggaccctaa agcatatgag
     1021 atcattgctg catgctccac tgctttttga ttcaatagag gaagagttcc cggaaagccg
     1081 caacatatgg gacagatgtt agaattgggt ttgaaaattc gatagtcttc atgacagaaa
     1141 caaaataatt tgctttttag ggaagttagt tggcagtgaa tttccaaacc aattattata
     1201 ttacccatca gatttcagga ctccttgcaa tattaatcac attttctaat agagaagcgg
     1261 catcgattaa tttct
//
LOCUS       DATLQL010000464         1451 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2430443, whole genome shotgun sequence.
ACCESSION   DATLQL010000464 DATLQL010000000
VERSION     DATLQL010000464.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1451)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1451)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1451
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2430443"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            82..>1451
                     /locus_tag="VNB68_04805"
     CDS             82..>1451
                     /locus_tag="VNB68_04805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36702.1"
                     /translation="MSITKMPLVVTTSIINKKTYLMTFIVWAIVLTDVIFGTFLDVLG
                     EPLNSSFGVILFIAMSITVFFAGLYALRHYMVALRKDLEAPSFFNRLYKATPIFLYAL
                     LVIFGAIIAEMVLFSQYSTYLLILIVLISAVAILFFGFRTYKFLSWFKSSVNKRHYIM
                     ILAFAVSSMLLCISMTVTTTLNTKILDFSRPPSIDPDFQSSNSMASRHLSRIELIIHL
                     YVFLVPQVTAIAIAETVAVAFFLRYFKDQIGRATFWTLIILPPVLFLTGVFGPQFLKS
                     TGSEFVYMESRFLIFRVIGTAGWVLADFVIAYAYLLVAKTLGRQTTSSHNKIINYLII
                     AALATILISPTTNNWITNNSYPPFGAIQRAFLVLASFLFSIGIYSVALSVAQDSELRD
                     LARKYVKEYSLLDTLGNAQENAEIMQKLVKLIHQHAYAMEKETGVESSMLDDNEARRY
                     LDLVIM"
BASE COUNT          410 a          276 c          262 g          503 t
ORIGIN      
        1 gccgttaaat acctgcttac gcactgtctg agttattact ttaccataaa gcatgagggt
       61 tataggagcg tatatagtga tgtgtcgatt acaaaaatgc cattggtggt cactacaagt
      121 atcattaaca aaaaaactta tttgatgacg tttattgttt gggccatagt acttaccgat
      181 gtaatctttg gcacctttct tgacgttttg ggagagcccc ttaactcttc ttttggtgta
      241 atattgttta tagcaatgag tatcactgta ttttttgcag gtctctatgc ccttagacat
      301 tatatggttg cattgcgcaa agaccttgag gctccttcgt tttttaatag gctgtacaag
      361 gcaacaccta tttttcttta tgcactttta gtcatctttg gcgctatcat tgctgaaatg
      421 gtgttatttt cacaatatag cacttacctg ctgattctaa ttgtcttaat aagtgcagtg
      481 gccatcttgt tctttggttt tcgcacttac aaattcttgt catggttcaa gtcgagtgtc
      541 aacaaacgac actatattat gatattggca tttgctgtat catcgatgct cctttgcatc
      601 agcatgacag ttactactac acttaataca aagatattag acttttcaag accaccctcc
      661 atagatccag atttccagtc tagcaattct atggcaagca gacacttatc tagaatagaa
      721 cttatcattc atctctatgt gtttcttgtt cctcaagtta ctgctattgc tatcgcagaa
      781 acagttgctg ttgcattttt ccttcgttat tttaaggatc agataggaag agcaacattt
      841 tggacactta taattttacc acctgtactt tttttaactg gggtatttgg tcctcaattt
      901 ttaaagtcaa ctggaagtga atttgtatat atggagtcca ggttccttat ctttagggta
      961 ataggtaccg caggatgggt tctagctgat tttgtaatag cttatgcata tcttttagta
     1021 gcaaaaactc ttggacggca aactacctct tctcataata agatcattaa ctatttgatt
     1081 atagcagcat tagcaaccat tttaatttct ccaacgacca ataactggat aaccaacaat
     1141 tcttatccac cctttggagc aatccaacgt gcctttcttg tgcttgcttc ttttctcttt
     1201 agcataggaa tatactctgt cgcgctgtca gtggcccaag attcagaatt gcgtgattta
     1261 gccagaaaat atgtaaagga gtattctctg ctagatactt taggtaatgc acaagagaac
     1321 gcagagatta tgcaaaagct tgtaaaacta atccaccaac acgcatatgc tatggaaaaa
     1381 gaaacaggag tagaatcttc aatgttagat gataacgaag ctagacgata tttagacttg
     1441 gtaattatgg a
//
LOCUS       DATLQL010000465         1097 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2603945, whole genome shotgun sequence.
ACCESSION   DATLQL010000465 DATLQL010000000
VERSION     DATLQL010000465.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1097)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1097)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1097
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2603945"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..214
                     /locus_tag="VNB68_04810"
     CDS             <1..214
                     /locus_tag="VNB68_04810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36703.1"
                     /translation="AQFLPRIRPVASFKPFPIADVLSIALVDRGIAITIFGCGIVVSH
                     IIIAGTAAHTIIVRIINMTAVIFSAM"
     gene            517..>1097
                     /locus_tag="VNB68_04815"
     CDS             517..>1097
                     /locus_tag="VNB68_04815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HVD36704.1"
                     /translation="MRLFEYQGKDLFSQYGIRIPTSYVAESLEEARKSASKLGYPVVL
                     KSQLSVGGRGKAGAILKCNNEGELAGKFSYLLTKAVNGELPRGILVEEMVEIKKEFYL
                     SLFLDRTKRSYSLLVSTEGGIDIEKAGNKTILNVPIDGISNQDAEDLGLQLGMSGNLL
                     ISFEDFAIKLSKLMVEKEAELAEVNPAALLNDGS"
BASE COUNT          355 a          192 c          235 g          315 t
ORIGIN      
        1 tgctcaattt ttgccaagga ttaggcctgt tgcttcgttc aaaccatttc caatagctga
       61 tgtactatcc atcgccttgg tcgatagagg gatagcaatt accatttttg gatgcggcat
      121 agtagtaagc catatcatca ttgcagggac tgctgcacat acaatcattg tcaggataat
      181 caacatgaca gctgtcattt tttcagccat gtaatagtat gtctctaatt gggcatataa
      241 gttttaaaag atgctgcaat actgtagcat tattctaaac caaaaatcgc taatcttttc
      301 ttacgagtag atcgtcctca cgttgagcat caatgataat gtcaggtcta aataacactc
      361 gacaatagag gagttatttg aaaacgacac agattgatca gatcaatgaa ttcattttcg
      421 agggcaaaaa tatcgtccat agatcgtcca cagtctatta ctactactca gtaatacgat
      481 tataaagaag tttataagaa tttcctctac tcttatatga ggttattcga atatcagggc
      541 aaggatctct ttagtcaata tggaattaga attccgacat catatgttgc agagtcactt
      601 gaagaagcaa gaaaatctgc gtcaaagctt ggttaccccg ttgtattaaa atctcagctc
      661 agtgtggggg gaagagggaa ggctggtgcc attttaaaat gcaataatga aggggagcta
      721 gcaggaaaat ttagctacct attaactaaa gccgtaaacg gagagttacc acgaggaatc
      781 ctagtggagg agatggtcga gataaaaaag gaattttact tatcactctt tttagacaga
      841 actaagagat cctattcgtt attggtatct actgagggcg ggatagacat agaaaaggca
      901 ggtaataaga cgattctgaa tgtaccaatt gatgggatct caaatcaaga cgcggaagat
      961 ctaggattgc agctaggaat gagcggcaat cttctgattt cttttgagga ttttgcaatt
     1021 aaactttcta aactaatggt agagaaggaa gctgaactag cggaggtaaa tccagctgcc
     1081 ctacttaatg acggatc
//
LOCUS       DATLQL010000466         1034 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2431087, whole genome shotgun sequence.
ACCESSION   DATLQL010000466 DATLQL010000000
VERSION     DATLQL010000466.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1034)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1034)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1034
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2431087"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            567..>1034
                     /locus_tag="VNB68_04820"
     CDS             567..>1034
                     /locus_tag="VNB68_04820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36705.1"
                     /translation="MSDYNSHDKSNNKRNITRHFLSDSRALDLSLVTLILATAGAFLQ
                     IGGTSWDVTSHLLQLPETFFTPSHMVLYLGVGLLTIAAGIGGILLLRKRELRKKSFAI
                     AFELFVIGSAIALVAGPSDFLWHQTFGIDGLLSPTHLILATAMLINSVAVVLGL"
BASE COUNT          304 a          202 c          186 g          342 t
ORIGIN      
        1 aaataagact tctcttcatc gtctattatg agaattcttt tcattccctc atcttactcc
       61 gtcattttga gcatatcttg ctacttccca tttgcaaatg cgacacgttc aatgcataca
      121 atccaatgaa tttgagtcct atatcactcc ctgttaaatc aattgccaga caactaacat
      181 gcacactcct gacatggtaa cttccaagaa cgaagtgaaa catatgctct agtacgtgaa
      241 gttctatact aaatatagta gaccgacaat atgatttttt aagattgctg cttagaacaa
      301 aggaaggccc gaaaactaga tgtactacaa ttgattgatc tagcattgta tacttcaatt
      361 tgacacagtt atggtgtact tgcttacggt caggagatat aataataatc tgttaatttg
      421 tgtgactcac acaaattata ggacttattg tgatcctaat gttctacttg taagttgtca
      481 ggtaattagt aatttatgag caatgactga cttgtcttat atttataagt ctccgatcgt
      541 taattcaaag taagaaaaat agatagatgt cagattacaa cagccacgat aaaagtaaca
      601 ataaacgaaa tattaccagg cattttctta gcgactcgcg ggctctggat ttatcattag
      661 tcacgttgat actagcaact gcaggagcat ttctgcagat tggtggtaca agctgggacg
      721 taacttctca tttacttcaa cttcctgaaa ctttcttcac tccttcacac atggtgctgt
      781 atctaggtgt tggcctgctg acaatagctg ctgggatagg aggaatttta ctattacgaa
      841 agagggaact tcggaaaaaa tcctttgcta tagcttttga actcttcgtt attggttctg
      901 caatagctct cgtagcaggt ccctctgact tcttgtggca ccaaacattt ggtattgatg
      961 ggttattaag tcctactcat ctcattcttg cgactgctat gttaataaat tcagtagctg
     1021 ttgtcctagg gctt
//
LOCUS       DATLQL010000467         1388 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1166760, whole genome shotgun sequence.
ACCESSION   DATLQL010000467 DATLQL010000000
VERSION     DATLQL010000467.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1388)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1388)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1388
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1166760"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..366
                     /locus_tag="VNB68_04825"
     CDS             <1..366
                     /locus_tag="VNB68_04825"
                     /inference="COORDINATES: protein motif:HMM:NF024864.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupredoxin domain-containing protein"
                     /protein_id="HVD36706.1"
                     /translation="TTAPTTAGNAGNGSSTSAPAAATAATLTIPVGASTAGNPSYDPV
                     SLTIKKGDEIDVVNKDSSPHTVTSGKAPDAPDAGKQFDTSIINAAASARLMTANLQAG
                     EYDFHCAVHPFMTGKLKVE"
     gene            588..>1388
                     /locus_tag="VNB68_04830"
     CDS             588..>1388
                     /locus_tag="VNB68_04830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase subunit I"
                     /protein_id="HVD36707.1"
                     /translation="MWEILFSTHHTDVGLLYMFTSIAFLMLGGALAMAIRAELFLPGI
                     QIFPESTSYHRFFTVHGTTMLLLWVIPFAAGVGNYLIPIMVRYKDMAWPKLNAVAFWM
                     IPVAGALIWLGFSDTGWTAYPPYSITRAAGPAADMWIFGAKILGVSSILGSINFIVTI
                     LKMKHPDLPLMKMSLFAWAILTTSFMIIVSIPTFAGALIMLYTDRLGVSGFFNPAMGG
                     DPIAYQHLFWFTFHPEVYIFFIPAVGMLYEIIPKFSRKPLFSYQSGVAA"
BASE COUNT          393 a          275 c          259 g          461 t
ORIGIN      
        1 actaccgccc ctaccacagc aggtaatgca ggtaatggta gtagtacttc tgctccagca
       61 gcagctactg ctgctactct aactattcct gtaggtgcat caactgctgg caatccttct
      121 tatgatcctg tttctctgac aataaaaaaa ggtgatgaaa ttgatgtagt aaacaaagat
      181 tcatcgccac atacagttac aagtggtaaa gcaccagacg cacctgatgc aggtaagcag
      241 tttgatacaa gtattataaa tgctgcagca tctgctagat taatgactgc aaatctacaa
      301 gcaggagaat acgactttca ttgtgctgtt catccattta tgactggaaa gctgaaagta
      361 gaataatact taaccctatt tttatctcat ttataatata ctcactactc taattttcct
      421 gctcttgcca ttatagacaa taaatcagtc gcaactttgt ctattatttt tttgaccttg
      481 agaattggtt ctgataaaat caaaatactt ttattgatat tgatatacaa tcactgccaa
      541 cagtaggtgt atatgtgttg gtattagaaa ttaaaaaacc tcgtccaatg tgggagatac
      601 ttttctcgac tcatcatacg gatgtaggtt tactgtatat gtttacatct atagcatttc
      661 tcatgctggg tggggccttg gctatggcga tacgcgcaga attattctta ccaggtatac
      721 aaatatttcc agaatctact tcatatcata gattttttac agtacatgga actactatgc
      781 ttcttctttg ggtaattcca tttgcagctg gtgtaggcaa ttatcttatt ccaataatgg
      841 tgcgttacaa agatatggcg tggccaaaac ttaatgctgt agctttttgg atgataccag
      901 tagcaggtgc actcatctgg ctaggatttt cagataccgg ttggacggcc tatccaccat
      961 attcaataac tagagcagct ggtcctgcag cggatatgtg gatatttggt gcaaaaattc
     1021 ttggagtttc ttcaatccta ggctcaataa acttcatagt cactattctg aaaatgaaac
     1081 atcccgatct tcctttaatg aaaatgtcgc tatttgcttg ggcgattctt accacctcat
     1141 ttatgataat tgtttcaatt cctacgtttg caggagcatt gattatgctc tatactgata
     1201 gacttggagt gtctggcttc ttcaatcctg ctatgggggg cgatcctatt gcttatcagc
     1261 acctattctg gtttacattt catcctgaag tctatatatt ttttatacct gcagtgggta
     1321 tgctctatga aataatacca aaattctcaa ggaagccgct ttttagctat caatctggag
     1381 tggcagca
//
LOCUS       DATLQL010000468         2583 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2252332, whole genome shotgun sequence.
ACCESSION   DATLQL010000468 DATLQL010000000
VERSION     DATLQL010000468.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2583)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2583)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2583
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2252332"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(366..2495)
                     /locus_tag="VNB68_04835"
     CDS             complement(366..2495)
                     /locus_tag="VNB68_04835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HVD36708.1"
                     /translation="MNENLSRKPNQLIKESSPYLLQHAYNPVNWYPWGEEALQTALAE
                     DKPIFLSVGYSSCHWCHVMAHESFENEEIAKIMNENFVSIKVDREERPDIDDIYQRAC
                     QLTTGTGGWPLSVFLTPTQKPYYVGTYFPVTNRHGLPSFGTILIKLADVYKNRKNEVI
                     SSTEEFMQALKDTSMDVSAHEGETLEKSMLDEAAVTLLHMGDPLHGGFGQSPKFPNPS
                     NLLFLLRAYDLSGITKYRDFVRFTANKMAAGGIYDHVGGGFARYSTDQKWLVPHFEKM
                     LYDNALLTSVYSELYQITGNADYLRVVNGILQYVIREMTSSGGGFYSSQDADSDGSEG
                     KFYTWSYKEISEIVDAEIFQLFCDYFGISQGGNFEGSNILNIQTTMRELSRRHGHSEE
                     WISSRINDSINKLYGIRLARVRPGTDEKVLTSWNGLMMSGFVDGYRVTGNTNYLEACK
                     SAFEFIENNLAYGGNRLYRVFKNGQAKINGYLDDYGFYIKAILDLFAVDSRSRYLEGA
                     ISITNAMVKHFWDTELGDFFFTSDDHEKLILRTKNHYDLAIPSGNSVAAANLLRLHYY
                     TQEQDYLIKATKLIKLISKSAIENPFGFGQLLSALYLKVKSPVEICIVRRANAINQLV
                     NSSMALWLNRQFIPNSISAVIEEGLELERLQKYSYFKGKVGEQDIEKVSEYSFVCQNF
                     TCSVPIFSVENLEEHVKNIETKRLKQN"
BASE COUNT          751 a          544 c          447 g          841 t
ORIGIN      
        1 aatggtaatc gggatcgagg gttcattata gtcccttatc acattctgaa tcaaaagaga
       61 cccagctgcc aaaactagca cacctatcgc gtggtaaaag agaaccatga taatcaaata
      121 tggtactgtc gtcctacgat actttgatgt ccatctcagt ggatggaagt ccttcattaa
      181 atcattaaaa agagaatgca atggcgattc tcagtattat ttgtgcccag agaaaaactt
      241 agcgtttgtc acatctttaa cacatcttta atatattgac actatcgttg taatactttg
      301 tccgatcgtc tggtctataa agtacttgtc actcgaccat tgacttgtac ttcaaaggaa
      361 tcagcttagt tctgtttgag tcgttttgtc tctatattct tgacatgttc ttcaagattt
      421 tcgactgaaa agataggcac agagcaggta aaattttgac atacaaatga gtactctgaa
      481 accttttcga tatcctgctc accgactttt cccttaaagt acgagtattt ctgtaaccgc
      541 tccaattcca aaccttcttc aatcacagca gatatcgaat tcggaataaa ttgtctgttc
      601 aaccatagag ccatagacga atttacgagc tgattgatag cgttggctct ccttacaata
      661 cagatttcta caggtgactt taccttcaga taaagtgcag acaataattg tccaaagcca
      721 aatggatttt cgatggcaga cttggatatc aactttatta attttgttgc tttgataaga
      781 taatcctgtt cctgagtata gtaatgtaat cttaggagat ttgccgcagc aactgaattg
      841 ccgcttggta ttgcaagatc ataatggttt tttgttctca gaatgagctt ttcgtgatca
      901 tctgaagtaa agaagaaatc acccagctcg gtgtcccaga aatgctttac catcgcatta
      961 gtaattgata tagccccctc caaatatcga gatcttgaat ccactgcgaa gagatctaag
     1021 atagccttga tgtagaatcc ataatcgtcc aaatacccgt taatcttcgc ttgtccgttt
     1081 ttgaatactc tatataatct gtttccgccg tatgcgaggt tattttctat aaattcaaat
     1141 gcactcttgc atgcttctaa atagttggta ttgccagtta ccctatagcc atcgacaaat
     1201 cctgacatca taagaccatt ccatgacgtt aatactttct cgtcagttcc cggtcggaca
     1261 cgtgcaagtc gaattccata taatttattt attgagtcat tgatcctaga tgatatccat
     1321 tcctctgaat gaccatgcct tcgcgaaagt tctctcatcg ttgtttgaat atttagaata
     1381 ttacttccct caaaattacc tccttgagat atgccaaaat aatcgcagaa tagttgaaaa
     1441 atttcagcat ccacaatttc actaatttct ttatatgacc aagtatagaa tttaccctca
     1501 gagccatctg aatcagcatc ttgagacgaa taaaatcccc cgccactaga agtcatttct
     1561 cttataacat attgtaggat tccattcact actctcaagt aatcagcatt ccccgttatt
     1621 tgatataatt cagaatatac actggtaagt agagcgttat cgtataacat tttttcaaag
     1681 tgaggtacta accatttttg atcagtagag tatcgcgcaa atccccctcc aacatgatca
     1741 tagattcccc cagcagccat tttgttcgct gtaaatcgta caaagtccct gtactttgta
     1801 atccctgaaa ggtcataagc tcttaataag aaaagtaaat ttgacggatt tggaaatttt
     1861 ggagattgac caaaaccacc atgaagcgga tcacccatat gaaggagagt tactgctgcc
     1921 tcatccaaca ttgacttttc taatgtttcc ccttcgtgtg cggaaacatc cattgatgta
     1981 tccttcagcg cttgcatgaa ttcttctgtg gatgatatta cttcgttttt tctgttctta
     2041 tatacatcgg ccaattttat taaaatagta ccaaaacttg gtaaaccatg cctattggta
     2101 acaggaaaat aagttcctac atagtatggt ttctgagtcg gagtgaggaa aactgaaagt
     2161 ggccatcctc cagttccagt agtgagttgg caagctcttt gatagatatc atcaatgtct
     2221 ggtctctctt ctctgtctac tttgatactc acaaagttct cattcataat ttttgcaatc
     2281 tcctcatttt cgaaggactc gtgtgccata acatggcacc aatggcatga actataccct
     2341 acgcttagaa aaattggctt atcctctgca agtgctgttt gcagagcttc ctctccccag
     2401 gggtaccagt tgactgggtt atatgcatgc tgaagaagat acggactgct ctccttaatt
     2461 agttggtttg gttttcttga aagattctca ttcaatatgg tcgatcttat attagtcgac
     2521 ttaggttatt tagattcttg catagtaatt gcacctcata atgtaaaatt tgataccaca
     2581 gcg
//
LOCUS       DATLQL010000469         1847 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2252681, whole genome shotgun sequence.
ACCESSION   DATLQL010000469 DATLQL010000000
VERSION     DATLQL010000469.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1847)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1847)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1847
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2252681"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..181
                     /locus_tag="VNB68_04840"
     CDS             <1..181
                     /locus_tag="VNB68_04840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HVD36709.1"
                     /translation="IDIVPGPRGLGLVAGENIRSLLKLAGVKDAWTKSFGSTSTLTST
                     AMAIFNALRGTYKTG"
     gene            191..649
                     /locus_tag="VNB68_04845"
     CDS             191..649
                     /locus_tag="VNB68_04845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HVD36710.1"
                     /translation="MALLVVRIRGTVNIPYWADLTLRNLNLEKKFSATIVPDSPVYIG
                     MLRKIAGMIAWSKADATIVKELFLKKARKIGSTAISDSDVPNDFGNIEGLVTAIVEDK
                     VKISELKNIKPFFRLNPPKGGFRRKTKKSYSDGGILGKNKELPDLVRRML"
     gene            728..1165
                     /locus_tag="VNB68_04850"
     CDS             728..1165
                     /locus_tag="VNB68_04850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uL15 family ribosomal protein"
                     /protein_id="HVD36711.1"
                     /translation="MAIRLRKSRRQRGTRYCGWGQIGQHRASGSRGGVGGAGKHKHFW
                     IRTVIEEPDHFGHPSSKSYSRKIVKKWANLRDLSSLITSNKGVEKESTVEINLSSLGI
                     NKLLGGGTVDRTLIIRVASVSENARTKIESNGGKIILDEHSTH"
     gene            1146..>1847
                     /locus_tag="VNB68_04855"
     CDS             1146..>1847
                     /locus_tag="VNB68_04855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HVD36712.1"
                     /translation="MSTVHTESIVRKIIKKVSGYIPQVEKPKKKITLTEKFVWSGIAL
                     FAYLVMGQIPLYGVTSAPQFDFLQFARVIFAAQQGTLLELGIGPIVTAGLLMQLLKGS
                     DLIKLNFKNPDDRSLFTSATKIVTIIVIIAEGSLYGVSVYGHLLASPALIPILILQLV
                     GSSIIVMFLDELVQKGWGLGSGISLFIMAGVAQGILWSLFSPVPAQDGPVGIFPFLID
                     SAIHGDLSQVFFRAGQ"
BASE COUNT          575 a          307 c          443 g          522 t
ORIGIN      
        1 gattgatata gttccgggtc cgagaggcct tggacttgtg gccggagaaa atattagaag
       61 tctactgaag cttgcaggag tcaaagatgc ctggacaaaa tcatttggat ctacaagtac
      121 attgacttct acagctatgg caattttcaa tgctttaaga ggaacttaca aaactggctg
      181 attgatatag atggctctgt tagttgtaag aatccgaggg acagtcaata ttccatactg
      241 ggcagacttg actctaagga atcttaatct tgagaagaaa ttcagtgcta ctatagtacc
      301 tgattcgcca gtctatatcg gaatgttgag aaaaatagcc ggtatgatcg catggagtaa
      361 ggctgacgcg accatagtca aggaattgtt tttgaagaaa gccagaaaaa taggctctac
      421 tgcaatatcc gactctgacg tgcctaatga ctttggaaat atagagggac tagtcactgc
      481 aatagtcgaa gacaaagtca aaatatctga gttaaaaaac attaaaccat ttttcagatt
      541 gaatccgcca aaaggtggat ttagaaggaa gacgaaaaag tcatattctg atggtggaat
      601 tcttgggaag aataaggagt tgccagatct tgtaaggagg atgttataaa atagtaatcc
      661 ttaattatgg aattattagt ggctttggtt ataccttagg tttaccaata ggggattata
      721 attagaaatg gctattagat taagaaaaag tagaagacag cgtgggacta gatattgtgg
      781 ctggggccaa ataggacagc atcgggcatc tggcagtagg ggaggagtag gcggtgcagg
      841 aaagcacaaa cacttctgga tcaggacagt cattgaggag cccgaccatt ttggtcatcc
      901 ctcttcaaaa tcttacagtc ggaaaatcgt caaaaaatgg gctaatttgc gagatttgtc
      961 ctccctcata acttcgaata agggtgttga aaaagaaagt actgtcgaaa taaatttgtc
     1021 ctctttggga attaacaagc ttttaggggg aggtactgtg gacagaacgc taataataag
     1081 ggtggcatct gtatctgaaa acgcaagaac taagattgag tctaacggag gtaaaattat
     1141 tttagatgag cacagtacac actgagagca ttgtaaggaa aataatcaag aaagtatcag
     1201 gatacattcc tcaggtagag aaacctaaga agaaaataac tctcaccgaa aaatttgttt
     1261 ggtctggaat tgcgctattt gcttatcttg taatgggcca gattccgtta tatggggtga
     1321 ctagcgcccc acagtttgat tttctacaat ttgcaagggt aattttcgca gctcaacaag
     1381 gaacgttact tgaacttggt attggaccaa ttgtaactgc cggattgttg atgcagttgc
     1441 taaaaggttc tgatttgata aaacttaatt tcaagaaccc tgatgacagg tccttgttca
     1501 cgtcagcaac aaaaatagtt acgattatag taataattgc tgagggatct ctctacgggg
     1561 taagcgttta tggccatctt cttgcaagcc ctgcgctaat accgatcttg atacttcaat
     1621 tagtagggtc tagcataata gtaatgtttc ttgacgagtt agttcagaag ggatggggac
     1681 tagggtcagg aataagcctt ttcattatgg ccggcgttgc tcaagggatt ttatggagcc
     1741 tgtttagtcc tgtgcctgcg caggatggtc cggttggaat atttccattc ctcatagatt
     1801 cagctattca tggagatttg tcccaagtat tttttagagc tggccag
//
LOCUS       DATLQL010000470         1394 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_654512, whole genome shotgun sequence.
ACCESSION   DATLQL010000470 DATLQL010000000
VERSION     DATLQL010000470.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1394)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1394)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1394
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_654512"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            294..536
                     /locus_tag="VNB68_04860"
                     /pseudo
     CDS             294..536
                     /locus_tag="VNB68_04860"
                     /inference="COORDINATES: protein motif:HMM:NF019013.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_process: GO:0030638 - polyketide metabolic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ester cyclase"
     gene            complement(1077..1259)
                     /locus_tag="VNB68_04865"
     CDS             complement(1077..1259)
                     /locus_tag="VNB68_04865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36713.1"
                     /translation="MNELQDRNRPEIASSYTGYSPEHHDLQAKPTLDDKEPVLDIVAA
                     NMNKVLHDRSKRKGSA"
BASE COUNT          432 a          262 c          258 g          442 t
ORIGIN      
        1 atattttctc tcacttcagg acttttccgt catccaagtc tgggaaatca gaccgaccgg
       61 taatgagctc caccactctc ttgtcgtatc agtgcacact tcttattatg gcttcacaaa
      121 caatgcaatt taatacatgg aagaaaataa ggtactgatt aaatcattta ttgacgaagt
      181 ttttaaccaa catgatttaa cagctattga caaatatcat tcaccctcct aactagtgac
      241 tcagggaaaa cagtagaatt atttaagaag tacttgactg cactgcacta ttttcaggct
      301 ttgcagatct gcatgtaaac atagaacata ttcttgccga aaataatttt gttctagtgt
      361 ttctcaattt cgttggcaca cataaaggag aatttaatgg aagaccaccc actaataagc
      421 cagtaactat cagatctgct gatctctata ggatagaaaa tgacaagatt gtagaacact
      481 gggatgtagt ggatcaattg gatttgttaa aacagacagg agcaatgagc aattagttct
      541 aaggacacaa gtatgaaaga atagacaagg tgacggtagc ttaattttaa gtcgagttcc
      601 gatttctaca ccgacgggct ctcccactcc ctgaacagtg atcctacaac tttaaagtaa
      661 atattaagtt ctattttatg ggctgtacaa gactttgtga agagattggc atgttacatg
      721 cttcatatcg tgatggggtg aagttttgtt ccaagtgtca aatctatctt ttttctgaga
      781 aggtactatg tccttgttgt aatactagat tgcgatataa gtcgcagaga aaattgtaga
      841 ccgggcttga actaaacata ctatcaaaag aatttatgat atacccaacg ggcaacgtat
      901 tgacatgaat gaacgatcta accgccaaca tgtaatgtaa attattccag aatagtcatc
      961 catgatatga tggaaatgaa gaacaactag attatcccca gagagaccaa acagtcatca
     1021 tatagccggt tatcaaaatc cttgacaaat caagaagaaa ttaagacatt tagatattat
     1081 gcactccctt tccgtttact tcgatcatga agaactttgt tcatgttggc agcaactata
     1141 tcaagaacag gctctttatc atcaagagtt ggcttggctt gtagatcgtg atgttctgga
     1201 gaatatccag tatatgatga tgctatctcc ggtctatttc tatcttgtaa ttcattcaca
     1261 actaaatttc tgacttgact tgccgtaact actatgggtt ctggttttgg acttgatttt
     1321 tgtcctcggg atacagttct ctttcctgtt ttttattcat gtggttgtct tctcttaccg
     1381 gtgacctgat ctgc
//
LOCUS       DATLQL010000471         1054 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1717708, whole genome shotgun sequence.
ACCESSION   DATLQL010000471 DATLQL010000000
VERSION     DATLQL010000471.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1054)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1054)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1054
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1717708"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            224..814
                     /locus_tag="VNB68_04870"
     CDS             224..814
                     /locus_tag="VNB68_04870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HVD36714.1"
                     /translation="MTTISKNMEINAPISEVFTYFARPEHMADQFPENMGLSIIPLEV
                     KNGFGVGTIFRISGDFDGKRLEWDCETIEYIPHRKIVAKMIEGPFKRWIITVTFEPVG
                     EKQTKTGIQVEYDMPMGPLGGLMDKVKLKKVAERGIENGLYRVKSLLEGTGSIPVYIT
                     LEAYREVLKQKQLLNCSVSETIMRLIKEPPVEKAAQ"
     gene            877..967
                     /locus_tag="VNB68_04875"
     tRNA            join(877..919,937..967)
                     /locus_tag="VNB68_04875"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:911..913,aa:Lys,seq:ctt)
BASE COUNT          355 a          191 c          224 g          284 t
ORIGIN      
        1 agatttctgg cagctttacc ttaacctctg taagttagca cgacttgata ttcataacca
       61 ataattactg ggacgagact tggggccata atcgtagggt agaatttctt gattaattgt
      121 cagaatgtaa tttctgtata atctaaatag aactcattaa caatgacaga aaaggaatta
      181 ggaaaccttt aaatccagtt cagcgatccc tgattcgtac ataatgacca ctatcagcaa
      241 gaatatggaa atcaacgctc cgattagcga ggtattcacg tattttgccc gaccagaaca
      301 tatggcggac caattccccg aaaacatggg actcagtata attccattag aggtgaaaaa
      361 tggttttggt gttggtacaa tatttaggat tagtggggac tttgatggca agagattaga
      421 atgggactgt gaaacaatcg aatacatacc acaccgcaaa atcgtggcta aaatgataga
      481 aggtcctttc aaacgatgga ttattacagt tacattcgaa ccagttggcg agaagcaaac
      541 aaagactgga attcaagtag aatatgatat gcccatgggt ccgttaggtg gattgatgga
      601 caaagtaaaa ctcaagaaag tggccgaaag aggaatagaa aatggacttt atagagtcaa
      661 gtccctgctt gaaggcacgg gatccattcc ggtgtatatc actcttgagg cgtacagaga
      721 agtattaaag caaaagcaac tattgaactg ctcggtatct gagactataa tgaggttaat
      781 caaggaaccc ccagtcgaaa aagcggctca ataatcattt tgattccgac aaattctagc
      841 ttcatttaaa tatagcagac taatgcaaaa ttttgagggt tcgtagctca gccaggtaga
      901 gcgtctggct cttaaccagt ctgtaaacag ggttataatg tcgtgggtcc gaatcccacc
      961 gaacccgata tataatttat catataatag tcatgaggac ataaaattta tagtaaccta
     1021 cttttcgcta gctctagttt taattgaacg ccaa
//
LOCUS       DATLQL010000472         1027 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1168691, whole genome shotgun sequence.
ACCESSION   DATLQL010000472 DATLQL010000000
VERSION     DATLQL010000472.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1027)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1027)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1027
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1168691"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..943)
                     /locus_tag="VNB68_04880"
     CDS             complement(<1..943)
                     /locus_tag="VNB68_04880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit D"
                     /protein_id="HVD36715.1"
                     /translation="MASLEDKIEDSNKLGLQIVKELDEDRFMTLSVGPQHPGSGHFRF
                     TVKLDGDYIVHCDPDPGYVHRGEEKMCEYRNFIQNIPHLERPVIHDSNNITYSYSLAV
                     EELTGIQVPRRGQYIRALASELNRQVYTLYWLAIYGIFLDHSTMFMWPTGDRELFIDL
                     LEALTGARVTHAFNIPGGVRNDVPYGFKERCLRQIAYFEKRLKEYEDIFYNNPLMRQR
                     TEGVGVLTKEDAIKLGVTGSVLRASGVPYDIRKAEPYDIYNEIDFKVQYLRTCDSFAR
                     SYVPLLDMRESCHIMRQLLDKIPESGEVRTKLQPNPKG"
BASE COUNT          281 a          236 c          179 g          331 t
ORIGIN      
        1 gtcctttagg gtttggttgc aatttagttc tgacctcgcc tgactcggga attttgtcta
       61 gtaactgcct cattatatgg catgactccc tcatatccaa taagggcaca tacgaccttg
      121 caaaagaatc acatgttctc aaatattgaa ccttaaagtc tatctcgtta tagatatcgt
      181 atggctctgc ctttcgtata tcgtaaggta ctcctgatgc ccgcaagaca gatccagtta
      241 cacccaattt tatagcatcc tccttcgtaa ggactcccac accttcagtc ctctgtctca
      301 taagcgggtt attataaaaa atatcctcat actcctttag tcgtttctca aaatatgcaa
      361 tttgcctcaa acatctttcc ttgaaaccat aaggtacatc atttctgacg ccgcctggta
      421 tattgaacgc gtgggttact ctagcaccag tcagagcttc tagaagatcg ataaataatt
      481 ctctatctcc ggtgggccac atgaacatag ttgaatgatc tagaaagatt ccataaatcg
      541 ctagccagta taaggtgtag acttgacgat taagttctga tgctaacgcc ctaatatatt
      601 gccctcttct cggaacttgg atacccgtta attcctctac ggccaagctg taggagtatg
      661 taatattatt agaatcatga ataactggtc tttctaaatg gggaatattc tgaatgaaat
      721 ttctgtattc acacatcttt tcctctccgc ggtgtacata tcctggatca gggtcacaat
      781 gaacaatgta atccccatcc agtttaactg taaatctaaa atgtccagag cccggatgtt
      841 gaggtcctac gctaagagtc ataaagcggt cttcgtctaa ctctttaaca atttgcaatc
      901 ctaatttgtt agagtcttca attttatctt caaggctagc catagattat ctcacttttt
      961 agtattatct tcctttgatt ctaaattcct ttcgcaacgg tgggatgtca gcccaatcct
     1021 caggtag
//
LOCUS       DATLQL010000473         1971 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_833841, whole genome shotgun sequence.
ACCESSION   DATLQL010000473 DATLQL010000000
VERSION     DATLQL010000473.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1971)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1971)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1971
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_833841"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(510..635)
                     /locus_tag="VNB68_04885"
     CDS             complement(510..635)
                     /locus_tag="VNB68_04885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36716.1"
                     /translation="MNRSTKLSICLGVHIVDEESKVEDEFEEQLKKDLDEEGCDE"
     gene            complement(632..1843)
                     /gene="ychF"
                     /locus_tag="VNB68_04890"
     CDS             complement(632..1843)
                     /gene="ychF"
                     /locus_tag="VNB68_04890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchF-related putative GTPase"
                     /protein_id="HVD36717.1"
                     /translation="MIRVGLIGKTNAGKTTFFNSATSSNEEISTYPFTTKHPKIGNAS
                     VISLCVHREFNLKDSPKNSTCVDGWRFIPIELVDLPGLIKGAWEGKGLGNQFLSVAAQ
                     SDVLLHIVDASGSIDSSGRLAEPGTGDPIADVSDIEEEMILWYLKLFEGNRDKIIRSI
                     NSGSDAVQSITEIFQGIGVKEWHVKRALEENELNDKKIGDFDPLQSRRFASTLRELSK
                     PTLIVANKVDLSAAADNFKRLREHNKHMLVVPCSADAELTLRRAQVKGLIRYFPGDER
                     FEINEKTSLNEKQKWALNFIRKDILGEYLQTGVQFALNVAVFKLLNMNVVYPVADPGK
                     LSDKRGNVLPDAYLMRSGSSVEDLANEIHSDLAKGILYAVDVRNGLRLPINYLVKDRD
                     VLSIISAMKKK"
BASE COUNT          553 a          422 c          343 g          653 t
ORIGIN      
        1 gagtcactgg gtgatgtggt atatgaatgc atgagatgcg gaactcctgt gactaatact
       61 gaattgtcaa aacttcccga aataaagtgc atttgcggat tccgggtctt cagaaagggc
      121 agacaaccaa tagtgaagca gcttaaaact atttagtaat aggttatttc tcaatttttc
      181 aaaatctgat tatctcctag cagtgccttt ttttgcctag aatgagatca tttattacgt
      241 tacagagaca accgtaggta tgaaaataat ttgtcctgat tgtaaaaaat ctgccgaact
      301 gtctgacgat ttcagctttg tcaaatgctc ccattgtcaa cttaatatga cgtatgggga
      361 atacgtgaag tacattgctt acaaggatat aagatatcga gatattttga gcgattataa
      421 aaagtaatcc aaagtttttt tcccataagg aattgagacc atcgaaacat tatgccggtt
      481 ttttgtgcca agcgtttaaa ccaaaaacgt cactcatcgc acccctcttc atcaaggtct
      541 tttttcaact gttcctcaaa ttcatcttct actttgcttt cttcatccac aatgtggact
      601 cccaaacaaa tcgacagttt agttgaccta ttcatttctt tttcattgcc gatattattg
      661 acagaacatc tctgtctttt accaaataat ttataggtaa tcttaatcca ttcctcacat
      721 caacagcata aagtattcct ttagctaaat cactgtgaat ttcatttgca agatcttcta
      781 cggatgaccc actcctcatt aagtacgcat cgggcagaac atttccacgt ttgtctgata
      841 atttgcctgg atcggcaaca ggatatacca cgttcatgtt tagtaacttg aacactgcca
      901 cattcaatgc gaattgtacc cctgtctgca aatattcacc tagaatatct tttcttatga
      961 aattaagtgc ccacttttgc ttctcattta gtgacgtctt ttcatttatt tcaaaccgtt
     1021 catcccctgg gaaataccgt ataagaccct tgacttgagc tcttcgcaat gtgagttcgg
     1081 cgtcagcact acagggtaca acgagcatgt gtttgttatg ctcacgaagc ctcttgaaat
     1141 tatctgccgc tgccgaaagg tctaccttat tggctacaat taatgtgggc ttagatagct
     1201 cacgtagcgt tgaagcgaac cttctgcttt ggagaggatc aaaatctcct atttttttat
     1261 cgtttaattc gttttcttcg agcgccctct tcacatgcca ctccttcact cctattccct
     1321 ggaagatttc tgttattgac tgaactgcat cagaacctga gtttatcgat cgtattatct
     1381 tgtccctgtt accttcaaac aatttcaggt accacaaaat catctcctct tcgatatctg
     1441 aaacgtctgc aatcggatca ccagtgccag gttcggctag ccttcctgaa gaatctatac
     1501 ttcctgaagc atcgacaatg tgtagaagaa catcagactg tgctgcgacg gataggaatt
     1561 gattgcctag tcctttacct tcccaagcac ccttaattag accggggaga tcgacaagtt
     1621 caatcggtat aaatcgccat ccatctacac aagtggaatt cttgggagaa tcttttaaat
     1681 tgaattctcg atgaacacaa agggaaatta cgctggcatt tccgatctta gggtgttttg
     1741 ttgtaaaagg ataagttgag atttcctcat tacttgatgt agctgaattg aaaaacgtag
     1801 tcttaccagc attagttttt cctattagac caactcttat catatctgtt ttttcaccaa
     1861 aagattattt atatgtagca atctgttcgc acgtttgtct ccaaataaag aaaatgtttt
     1921 tcagtgctat attttaactt ctcttctttt ctttgaatgg aaatgcaatg g
//
LOCUS       DATLQL010000474         1203 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2253393, whole genome shotgun sequence.
ACCESSION   DATLQL010000474 DATLQL010000000
VERSION     DATLQL010000474.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1203)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1203)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1203
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2253393"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            61..>1203
                     /locus_tag="VNB68_04895"
     CDS             61..>1203
                     /locus_tag="VNB68_04895"
                     /inference="COORDINATES: protein motif:HMM:NF016724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HVD36718.1"
                     /translation="MNDSTKEPLFVNHLLLRKDSVEFRSYQKSISQCAFGKNTLVILP
                     TALGKTVISLFVCADTLYNYRDKRVLVMAPTRPLVTQHMNTFFSVLKIFEDQIAEVTG
                     KITPAGRRAIWKKQEIRLVFATPEVVKNDIQENRLSLNDFTLLVFDESHRAVKDYAYS
                     YVAEKYVNQSVYPVILALTASPGSDKQRIQDVCDNLFIEQIEYRSEEDPDVKGYINPI
                     EVKWEWFDLPSDFQYIRSILKGMLDEKIKWLVQHRLLRKDPRWIFKRDLINVGDQIRY
                     NLELTMEEQRGPLYVALMQQASALSLMYCSELIESQGSYSLKAFLDRIEEEGGKSHQT
                     LLNDPRIKEIKTLVNKLTTQHPKLMYITDQLRTRYQIAKSNYDTGVT"
BASE COUNT          416 a          214 c          247 g          326 t
ORIGIN      
        1 tagacggaag gaggatgttt tacattcgaa atctcttgca atttaagggt aaacaactgg
       61 atgaatgatt caacaaaaga acctctattt gtaaaccatc tccttttgcg aaaggattcg
      121 gttgaattta ggtcatatca aaaaagcata tctcagtgtg cattcggcaa aaatacactt
      181 gtaattcttc ctacagcttt gggcaagact gttatatccc tatttgtttg tgccgacact
      241 ctttacaact atagggataa acgcgtccta gttatggcgc ctacgagacc tctcgtaaca
      301 caacatatga atacattttt ttctgtgcta aaaatatttg aggatcaaat agcagaggta
      361 acagggaaaa taactccagc tggaagaaga gcaatttgga aaaaacagga gataaggctc
      421 gtttttgcga ccccagaagt tgtcaaaaac gacattcaag aaaatcgact atccttaaat
      481 gattttacgt tactagtctt tgatgagtcg catagagccg taaaggatta tgcatatagt
      541 tacgtagccg aaaaatatgt taatcaatca gtttaccccg taatcctggc gcttactgcc
      601 agtccaggct cggacaaaca aaggattcag gatgtttgtg ataatttgtt cattgaacag
      661 atagaatata gaagtgagga agatccggat gtaaaggggt atatcaatcc catagaagta
      721 aaatgggaat ggttcgacct accctcagac ttccagtaca taagatcaat tttgaaggga
      781 atgttggatg aaaaaatcaa gtggcttgtc caacacagat tattacgaaa agacccaaga
      841 tggatcttta agcgagactt gataaatgtt ggagatcaaa ttcgatacaa cttggagctt
      901 acaatggagg aacaaagagg tccactgtat gttgccctga tgcaacaggc ttcagctcta
      961 tctctcatgt actgtagtga actgattgaa agtcaagggt cgtattcgct caaggcattt
     1021 cttgatagga tagaggaaga gggtggcaag tcacatcaga cattacttaa tgatccaaga
     1081 ataaaggaaa taaagacact tgtaaataaa cttacgaccc aacatccaaa gctaatgtat
     1141 attacagatc aattaagaac tagatatcaa attgccaagt ctaactatga tactggagtc
     1201 aca
//
LOCUS       DATLQL010000475         1985 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2253919, whole genome shotgun sequence.
ACCESSION   DATLQL010000475 DATLQL010000000
VERSION     DATLQL010000475.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1985)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1985)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1985
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2253919"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(442..1560)
                     /locus_tag="VNB68_04900"
     CDS             complement(442..1560)
                     /locus_tag="VNB68_04900"
                     /inference="COORDINATES: protein motif:HMM:NF012377.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cellulase family glycosylhydrolase"
                     /protein_id="HVD36719.1"
                     /translation="MSNQEPLNGVVMKGIYVNLKQNNIKIPSAPPNYIENSFKMISEA
                     GFNHVRFLFYWEAYERDPDSFMKEIESVASAADKWGIKVIYDNHQWHTSSWLEKLGTG
                     FPWSLFENNLKYIKDGGGNTQHPIAKLFWSDWWNRSVKDNQGRDGWNLMADFLKKIVN
                     VVDTHSSTTGYEILSEPHVSTVDEWSKIGKFNTFMVGELRNATQKTIAYSMNVPVDLN
                     SPINITPENLAKMIPSDKQNVVFKISVYGVPSRDAYQKERFDTFLKTRNLTGIPLYVG
                     EWNNVVRTPGEGGVFTINPNASQLTEDDAAKILDEFKKASVWGTAFWKWDYKNVDTAS
                     FNLITVSDGMLLPTKYFDILKNAVSSIYGSKNYTSITG"
     gene            1559..1795
                     /locus_tag="VNB68_04905"
     CDS             1559..1795
                     /locus_tag="VNB68_04905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36720.1"
                     /translation="MGVDCAFEIAETLPQRITIKNIMADMLKICFIDNPKALIDLICI
                     TMGIECKENRLGLYQNKSPRNQFREAVTLKCGRK"
BASE COUNT          609 a          381 c          366 g          629 t
ORIGIN      
        1 gagaacacga cgaaataaac tagagaattc tttattggcg gtcttatatg ttaaccaatc
       61 gctttaaata gcgatttgca acgacgagca tagatctaac gctgaaaaag aaataacatt
      121 tacgaagcta gtattaagca caaatcagca atccatcagc aattacaagg tttaaaaaaa
      181 atttcataaa ggaaataagg tccatgctat tcattgattt gatttacctc accacttgtc
      241 caatgatatt cccatggatg agcggagcaa gtttatttta caacatatgg acgtcctaaa
      301 aatgataaga aatcgtcttg ttacatgttg cttaaaatga gctgcacgta taccttcaat
      361 attagacttt agactcctct cgattgctta gatcatttcg atctggcatg gactaacgaa
      421 ggagacgtat gtacgaattt tttacccggt tatggacgta taatttttac taccataaat
      481 acttgatact gcattcttaa gtatgtcaaa gtattttgtc ggtaacaaca ttccatcact
      541 gacagttata agattgaagc tagcagtatc tacattctta taatcccact tccagaaagc
      601 agtaccccat acgctagctt tcttaaattc gtccaaaatc tttgctgcat catcttcggt
      661 cagctgactt gcattaggat taattgtgaa tactcctcct tctccgggtg ttctcactac
      721 attattccat tctccgacgt acagaggtat gccagttaag tttcttgttt tcaaaaaggt
      781 atcaaatctt tctttctggt acgcatctct gctgggaact ccatatacac ttattttgaa
      841 tacaacattc tgcttatctg agggaatcat ctttgctaaa ttttctggtg taatatttat
      901 tgggctatta aggtcaactg gtacattcat actataggcg atagtttttt gagtcgcatt
      961 tcttagttct ccaaccatga atgtattgaa cttgcctatc ttagaccact cgtctacagt
     1021 gctaacatgg ggttcactga ggatttcgta acctgtcgta ctagaatgag tatctaccac
     1081 gttaacaatc ttcttaagaa aatctgccat taggttccat ccatctcttc cttggttatc
     1141 tttgacggac ctattccacc aatcactcca gaatagtttt gcgatgggat gttgagtatt
     1201 acctccacca tctttaatgt acttcaaatt gttttcaaaa agcgaccatg ggaatcccgt
     1261 gcccaatttc tcaagccacg atgacgtgtg ccactgatga ttgtcgtaaa ttactttaat
     1321 cccccatttg tctgcagcac tagcaactga ctctatttcc ttcatgaaag aatcaggatc
     1381 tctctcgtat gcctcccagt agaataaaaa tctgacgtga ttgaatcctg cttcagagat
     1441 catcttgaaa ctattctcaa tgtaattggg tggtgcggaa gggattttga tattattctg
     1501 ttttagattc acgtatatac ctttcataac tacaccattc aacggctctt gattgctcat
     1561 gggagtcgac tgtgcattcg agatagctga aacgttacca caaagaatta cgatcaaaaa
     1621 tataatggcc gatatgttaa agatatgctt cattgacaat cctaaggctc tgatagattt
     1681 aatatgtatt acgatgggaa ttgagtgtaa agaaaatagg cttggtctat atcagaataa
     1741 aagtccaaga aatcagtttc gtgaagctgt taccttgaag tgtggaagaa aatgatttag
     1801 attatgacag acaaatgttg gaataattgg atttgatcga actagatgat aaaaaaaggg
     1861 acaggtgtcg aggaaggaca gaatgagggt gggggtcaaa gtacattgca taatagctaa
     1921 agggaagaag acctactagt tattcattgg cgatggcagg attacaaccg agcatattct
     1981 caata
//
LOCUS       DATLQL010000476         1064 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_480635, whole genome shotgun sequence.
ACCESSION   DATLQL010000476 DATLQL010000000
VERSION     DATLQL010000476.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1064)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1064)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1064
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_480635"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..855
                     /locus_tag="VNB68_04910"
     CDS             <1..855
                     /locus_tag="VNB68_04910"
                     /inference="COORDINATES: protein motif:HMM:NF017380.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF763 domain-containing protein"
                     /protein_id="HVD36721.1"
                     /translation="AEKHYNLSSAKMENLLYASRMAAKVDNSAVQDGFSLYHHVIAFD
                     DEGNWTVVQQGMNRTNRMARRYHWISDTVKSFTSEPHAGIISNFKNPNTLDMTSIDSA
                     ENQKISVELATSTIDTVKSSVHRIIMDYSPQLNDITLDKWIAGDNNFHKDIPISDSMK
                     KVQNSEHYEMPRRLNWDVFRRIYDIQPKNYEELISIPGIGPAAVRALSLIGEIIFGTK
                     ASWHDPVKYNFAHGGKDGVPYPVARKTYDKSIGYLSSAIEGAEIERQERVQALKKLAD
                     YSARMFNS"
BASE COUNT          361 a          196 c          212 g          295 t
ORIGIN      
        1 gctgaaaaac actataatct ttcttcggct aaaatggaaa atttattgta cgctagtagg
       61 atggcagcga aggttgacaa ttctgcagta caggatggtt tttcattata tcaccatgta
      121 atcgcatttg acgatgaagg aaactggaca gtagtacaac agggaatgaa tcgcactaat
      181 agaatggcaa ggagatatca ttggatttca gatactgtga aaagttttac ttccgaaccc
      241 catgcaggca tcataagcaa cttcaaaaac ccaaataccc ttgatatgac ttctattgat
      301 tctgcagaaa atcaaaaaat ctcagttgag ttagcaacaa gcaccatcga tactgtaaag
      361 tcgtcagtcc acagaattat aatggattat agtccccaac tgaatgatat cactctggac
      421 aagtggattg ctggagataa caacttccat aaggatatac ccatatctga ctccatgaaa
      481 aaagtccaga attctgaaca ttatgagatg ccccgtagat taaactggga tgtatttaga
      541 agaatttatg atattcagcc aaaaaattat gaagagttaa tttctattcc aggaattggt
      601 cccgcagctg taagagcgct ttcgcttata ggagagataa tttttggaac gaaggcatct
      661 tggcatgacc ctgtaaaata caattttgca cacggtggga aggatggggt accatatcca
      721 gtggctcgta agacatatga caaatccata ggttatcttt cttctgcgat agagggagcc
      781 gaaattgaaa ggcaggagag agttcaagct ttaaagaaat tagcagacta ttcagctcga
      841 atgtttaact cctaaaccag atttcaatag aggcaactat acaagctatt aattggaatt
      901 acaatcaact gaaattttgg atatagcgcc ctttctgtta gtataggttt cgtaattcaa
      961 aacaaaatta acttttgaaa ttttcgttat cccaagaaaa cagatgttaa cctttcatca
     1021 ctccaaaggc gaagcccgct gccaagcctc ctgttagggg tatg
//
LOCUS       DATLQL010000477         1196 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1546127, whole genome shotgun sequence.
ACCESSION   DATLQL010000477 DATLQL010000000
VERSION     DATLQL010000477.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1196)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1196)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1196
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1546127"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..740)
                     /locus_tag="VNB68_04915"
     CDS             complement(<1..740)
                     /locus_tag="VNB68_04915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid--tRNA ligase-related protein"
                     /protein_id="HVD36722.1"
                     /translation="MSNCEHKRIFAICLGEQPLGKKISVAGWIVDFTDIGKIGFVKVR
                     DVTGTVQGVVTGDVLARTREIPRQSSVLIKGIVSKTKAKNLPVEIAVDDVMVNGKAVH
                     PLPIDPTGRIESSMDKRLDCRALDLRNEHVLTIFKIRSEALNVIRNVLRSRMFIEVNT
                     PKIIGSATEGGANLFELDYFKRKAYLAQSPQLYKEQLTLGLERVFEVGPYFRAEPSHT
                     VRHLSEFISIDLEAAYLDYNEIMDIVEEL"
     gene            complement(745..>1196)
                     /locus_tag="VNB68_04920"
     CDS             complement(745..>1196)
                     /locus_tag="VNB68_04920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36723.1"
                     /translation="NKLKNGRLTQEDVEVSIRLTKLSGKNQELDKLTLVNSRKVEEDF
                     VLFFRSPDIVLLRSSQKMAGTIEKEFHGKVWIMEADSSPRKFLENLFFPIRISNSNMI
                     WLPGGQKVTQVTISGKDYAKISQKVNKIKLIAEKIKEIELMVQVSEE"
BASE COUNT          335 a          267 c          190 g          404 t
ORIGIN      
        1 agttcttcca ctatgtccat tatctcatta tagtcaagat aagcagcctc aaggtctata
       61 ctaatgaatt cagaaaggtg tctcacagta tgggaaggct cggctctaaa gtaaggccct
      121 acttcaaaaa ctctttccaa gcctaaggta agttgctctt tgtataattg aggactttgg
      181 gcaagatacg cctttctttt aaaatagtct agctcaaaca gattagcccc accttctgta
      241 gcagagccaa ttatctttgg tgtgtttacc tcaataaaca tccttgatct aagaacattc
      301 cgaatcacat ttagggcctc agaacgaatt ttaaatatag tcaaaacatg ctcatttctt
      361 aaatcaagag ctctacagtc caatctcttg tccatagaag attcaattct tcctgtcgga
      421 tctattggca atgggtggac agcttttcca tttaccataa catcatccac agcgatctcc
      481 acgggtagat tcttcgcctt agttttacta acaattccct ttatcaatac tgaactttgt
      541 ctaggaatct ctcttgttct tgcaagaaca tcgcctgtga ctacaccctg tactgtgcct
      601 gtaacatctc tgactttaac gaaccctatt tttccaatat cagtaaagtc cacgatccat
      661 cctgctacgc taattttttt gcctaggggc tgttcaccca gacaaatggc aaaaattctc
      721 ttgtgctcac aattagacaa ttttttactc ttctgatacc tggaccatga gttcaatttc
      781 cttaatcttt tcagcaatca gtttaatttt gttaactttc tgcgatattt tggcatagtc
      841 cttaccagaa atagtaactt gagtaacctt ttgacctcca ggtaaccaaa tcatgtttga
      901 attcgaaatt cttattggaa aaaaaagatt ttccaagaat tttctgggag aagaatcggc
      961 ttccataatc caaaccttac catgaaattc tttttctata gtacctgcca tcttttggct
     1021 agatcttagg agaacaatat ccggtgaccg aaaaaataat acaaagtctt cttcgacctt
     1081 tctggaattg accagggtca atttatctaa ctcctgattt ttgcctgaga gttttgtgag
     1141 tctgatggat acctctacgt cttcctgtgt tagccgtccg ttctttaatt tatttt
//
LOCUS       DATLQL010000478         1124 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1365386, whole genome shotgun sequence.
ACCESSION   DATLQL010000478 DATLQL010000000
VERSION     DATLQL010000478.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1124)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1124)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1124
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1365386"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            75..>1124
                     /locus_tag="VNB68_04925"
     CDS             75..>1124
                     /locus_tag="VNB68_04925"
                     /inference="COORDINATES: protein motif:HMM:NF015772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase II large subunit"
                     /protein_id="HVD36724.1"
                     /translation="MLNDSPKLKDILERLGVIHSVKNEGKIIEIDNMDQAYSLTKLLT
                     SEPTIPTALRLSSSLSVNNIVETKDAIEFVSKISGFEIMPKFASSISVRVGRPEKAAE
                     RKMKPPVHALFPVGSKGGATRDILKAAKEQSFYAEISNRFCSPCKQPSTGAFCRYCSS
                     PTPVRSMCITCKEETANDANDNKCYRCGKEGKTYSPVAYPLKTAIEEAQQKLGIKAAE
                     PLKGVKALISKDKSVEPLEKGILRQKNSLFTFKDGTIRFDATNEPLTHFKPKWTMISI
                     EKLRELGYTRDYLDKELVSSDQLVELLMQDILIPLDCAKHLLNVAKYVDGELVKLYGL
                     EPFYNAASIEDLIGSL"
BASE COUNT          397 a          204 c          222 g          301 t
ORIGIN      
        1 tattactgag agaaaaaatt tgtaaagagc aacaagagac tagaagaaat aatacttcta
       61 attacccttg ccgtttgctc aatgatagtc caaagttaaa agatattttg gaacgacttg
      121 gcgtaattca ttcagtaaaa aatgagggta aaatcattga aattgataac atggatcagg
      181 cctattctct aaccaagtta ttgacctctg aaccaacgat accaacggct ttgagattgt
      241 catcatcact ctctgttaat aatattgttg aaacaaaaga cgcaattgaa tttgtatcaa
      301 aaatatcagg gtttgaaata atgcccaaat tcgcatcatc aatatcagta agagtaggac
      361 gaccagaaaa ggctgccgaa cgcaagatga aaccccctgt tcatgcattg tttccagtag
      421 gatctaaagg tggggctacg cgtgatattt tgaaggcagc aaaggagcaa tctttctatg
      481 ctgaaatctc aaatagattt tgtagtcctt gcaaacaacc ttcaacaggc gctttctgtc
      541 gttattgcag ttccccaact ccagtacgta gtatgtgcat aacctgtaaa gaggagactg
      601 cgaatgatgc caacgataac aagtgctata ggtgcggcaa agaaggcaag acatattctc
      661 cggtggcata tccacttaaa acagcaattg aagaagcgca gcaaaaactt ggcatcaaag
      721 cagcagagcc acttaaaggt gtcaaggctc ttattagtaa ggacaagagt gtcgagccat
      781 tagaaaaagg aatactaaga caaaaaaata gtctctttac ttttaaggac gggactatta
      841 gatttgatgc aactaatgaa ccgttgactc acttcaaacc taaatggaca atgataagca
      901 tcgaaaaact aagagaatta ggttatacta gagattatct tgataaagaa ttagtgtcat
      961 ctgatcaact tgtcgaactg ctgatgcaag atatactaat acctctagat tgtgctaaac
     1021 atttgctcaa tgtggccaaa tatgttgacg gagaacttgt aaaattatat ggacttgaac
     1081 ctttctacaa tgcagcttct atagaagatc tgataggcag cctt
//
LOCUS       DATLQL010000479         2244 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2609101, whole genome shotgun sequence.
ACCESSION   DATLQL010000479 DATLQL010000000
VERSION     DATLQL010000479.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2244)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2244)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2244
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2609101"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(35..550)
                     /locus_tag="VNB68_04930"
     CDS             complement(35..550)
                     /locus_tag="VNB68_04930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36725.1"
                     /translation="MIEYFIVIAIVLSLLFLNTDLAVSFAQSTTVSPTTISFPLSKGY
                     VNGKIAFFIATDSSDNQTATSISDNLGHIVNFAPVLALIPELVRQQGYEFVNGIRGEG
                     PFGFQLPVATAFPGDESYSPIVQLNFVEWHDNAIPRELKSAKEILSAQTNGELTVTKT
                     TILINSPVVQR"
     gene            867..2183
                     /locus_tag="VNB68_04935"
     CDS             867..2183
                     /locus_tag="VNB68_04935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36726.1"
                     /translation="MNQYEFTNSASSNSNSANTKSSSQSNFSLDRQVQELKDRVHHDA
                     ERVDEAFRVGVEVEACLLDEKGIPVTAEPLIKELAGTTYEIDYEYGACQFEYKTSPVG
                     MNNLDYLNIVFEQFIESLDRFIKKAYKEKEVIPVFLGANPSPEIMKEGLITNKPRYNK
                     LADWQNSLPDVEIEGYNFRAAYVATAIQGFHLHLQGKNPKNTTIMFNHILNIIPSAIV
                     LGANSRLFAGRVYSLHEPRIHLYDQSEQQNSGFPAIPRYLDGIGDYIDYTTSREPKIA
                     KDYFELEKERHDDARIRIGTDSYRVETRIMSVQPTSKSLMAMAEFYIGYLSRAIHEER
                     ELRPLATLREERMAAVRSGYYAKTHFNIVDTIKAQLDFARKGLSDLGVNAEFLNILDK
                     RIENRNTPGEYVAKLWSKKFNGSVNETIYEIISDIWQKTKDNQPIT"
BASE COUNT          753 a          403 c          441 g          647 t
ORIGIN      
        1 gaagcatcta gtgcgataac aagagaaggg ctacttaccg ttgtactaca ggactattta
       61 ttaaaatagt tgtctttgta actgtcagct ccccattagt ttgggcggac aatatttctt
      121 ttgccgactt caattctctc ggaattgcat tgtcatgcca ctcaacaaag ttcagctgaa
      181 cgatcggact ataactttca tctcctggaa atgcagtggc tactggtaat tggaacccaa
      241 aagggccttc tcctctgatt ccatttacga attcataacc ttgctgtcga actaattctg
      301 gaattaatgc taggacaggt gcaaaattta ctatgtggcc tagattgtcg gatatagaag
      361 tagctgtttg attgtcagat gaatcagttg cgataaagaa tgctattttt ccatttacgt
      421 atcctttcga caaaggaaaa gaaatggtgg tcggtgagac tgttgttgat tgagcgaaag
      481 atacagctaa atcagtattc aggaagagta aggataaaac aatagctatt acaatgaaat
      541 attctatcat atgggaatca agtgtgagta cctggacata aattgcttac ttctctcaat
      601 ttgaggtggc cgtgtgacaa ttttgtgaaa gtaatcggcc tactcatgtt agataaagtt
      661 gtgcctctac ttgggcaata agcagcttca attttcattg tagtaaaggt tacatgatta
      721 tgaattacgt ttaccatgaa gtcatggtct ttgaaaagat actactgcta attattatta
      781 tagttggtcc aattatattt cgagtttaac atcaattggc caatctagat atgatatccc
      841 ccaggaccag ttcttgcatc gacagggtga atcaatatga atttactaat tccgcgtcct
      901 ccaactcaaa ttccgcgaat acaaaatcta gctctcaatc gaatttttcc cttgacaggc
      961 aagtacaaga attaaaggat agagtacatc atgacgctga aagagtagac gaagctttca
     1021 gggttggggt agaggtcgag gcttgtttac tcgatgaaaa gggaatccca gtgactgcag
     1081 aaccattaat caaagaactt gcaggaacca cctatgaaat cgattatgaa tatggtgcct
     1141 gtcaatttga atataaaacc tctcccgtag gaatgaataa ccttgattat ctcaacatag
     1201 tatttgagca atttatagaa agtctagata ggttcattaa aaaagcgtac aaagagaaag
     1261 aggtaattcc tgtctttctg ggcgctaatc cttcacctga aattatgaaa gaaggtctaa
     1321 taactaacaa acccaggtat aataaattgg ctgattggca gaacagtctt cctgatgttg
     1381 aaatagaagg gtacaacttt agagcagcgt atgttgcaac agcaattcag ggctttcatc
     1441 ttcatctaca aggaaaaaat ccaaagaata caaccatcat gttcaatcat atattaaaca
     1501 taataccttc tgcaattgtc cttggagcga acagcagact ttttgccggt cgagtatatt
     1561 cattgcatga accaagaatt cacctatatg atcaatcaga acagcagaat tcaggattcc
     1621 ctgcaattcc cagatacctt gatggaatag gagattatat agactatact acttcacggg
     1681 aaccaaagat agcgaaagat tattttgaac tcgagaaaga acgacatgat gatgcgcgaa
     1741 tccgaatagg aacagattcc tatcgtgtag aaacaagaat aatgtctgtt cagccaacct
     1801 caaaaagctt aatggcaatg gcagaattct atattggcta tttgagcagg gctattcatg
     1861 aagaaaggga actacgacca cttgctactt taagagagga gagaatggca gcagttcgtt
     1921 cgggttacta tgccaaaact cattttaaca ttgtagatac tataaaagct caacttgact
     1981 ttgctcgcaa gggtttgtct gatttaggtg tcaatgcgga attccttaat atactagaca
     2041 agagaataga aaatagaaat actccaggag aatacgtagc aaaattgtgg agtaaaaagt
     2101 tcaacgggtc agtcaacgaa actatatatg aaattatctc tgacatttgg cagaagacta
     2161 aagataacca acctattacg tagacaagaa acttatttaa tttaatatcc gatcataaca
     2221 tatcagtaca ttcttaaatt tcta
//
LOCUS       DATLQL010000480         1801 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_482010, whole genome shotgun sequence.
ACCESSION   DATLQL010000480 DATLQL010000000
VERSION     DATLQL010000480.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1801)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1801)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1801
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_482010"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(428..>1801)
                     /locus_tag="VNB68_04940"
     CDS             complement(428..>1801)
                     /locus_tag="VNB68_04940"
                     /inference="COORDINATES: protein motif:HMM:NF017964.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amylo-alpha-1,6-glucosidase"
                     /protein_id="HVD36727.1"
                     /translation="YTILKLARAFQKAKVSMEYLKAEYDQLGAGICAGLPRFPNYWAR
                     DTGWSLIGYLSVGDYRFVFRVIENFLRHQARKTSKSAIKGELPMLISGKSFLHSTTFG
                     SADSTFLFPWAIREYVYCTGDVHFLTERWRSIIDLVNWGLLKDEDGDGLVDHGFTGVA
                     EKLPIQDSTWMDHIDRRKSANDVQALFYESLKIGSDLAGVVGDSHNQEGWLKHAKELR
                     NKIDLEYWDHNTGFYYDTIRRDCTKDPSIRPNALIMLMTEAVKDRSKAESVLKRIEKN
                     DITTPWGVRTLSNTDPKYYPTLYHDGAVWPLVTGWAALSEIKFGRREQALYYIESMAE
                     RILHENGMFAETYRGDRPEPFNSCILQAWSIGMYVHAFREMMLGMKVNMIENKIQIEP
                     QIPESLRTNSIPINFKYRLDTIRGTGTFHFMVDPNDDRISVAFNGGELEVQPEIFSNT
                     YSVNIEH"
BASE COUNT          539 a          395 c          297 g          570 t
ORIGIN      
        1 ggctggaagt gtcacttcat atcttttaat atattaatca acacctggct tgagaacacc
       61 gcgcctacaa aaggtacaca agttataaca tggaagtaac aacaatatca ttccagagcg
      121 tacaatatcc tcaaattgtt ctagagcaac atcttctagt atgaaaatgc cctattgata
      181 ttagatacga tatatccaaa gttgttcatc tgcaagacgt ataacagaaa aatgaaaaaa
      241 actaggataa cgatatctta tgatgatgtc attctaataa aatagataga gtttctagag
      301 atagtactct gcaacagttg aatattcgct gctgaagggt gtcaatatca tcgtagatga
      361 agctcatgaa gatgtcgttt tgttactcct gatagtaacg agaatacaag tatctttaga
      421 attcacctca atgttcaata ttaactgaat atgtgttact gaaaatttcc ggttgtacct
      481 ctaactcacc gccgttaaat gcaacagata tcctgtcatc gttaggatcg accataaaat
      541 ggaatgtgcc tgtacctctt atagtgtcca atctatattt gaaatttatt gggatagagt
      601 tagttcttag cgactctggt atttgaggtt caatttgaat tttgttctcg atcatattta
      661 ccttcatacc aagcatcatt tcacgaaatg catggacgta catcccgatg gaccaagcct
      721 gaaggataca tgaattaaac ggttcaggtc gatcgcctct atatgtctct gcaaacatac
      781 cgttttcatg aagtattctt tctgccatag attctatgta atagagggct tgttctcttc
      841 ttccaaattt tatttcactt aatgcagccc atcctgtgac aagaggccat acagccccat
      901 catgataaag agtgggataa tactttggat ctgtattact caatgtcctt actccccaag
      961 gcgtagtaat atcattcttt tctattctct taagaacaga ttctgctttg cttctatctt
     1021 tgaccgcttc cgtcatcagc ataattagtg cattcggacg aatactagga tcttttgtgc
     1081 aatctcttct aatagtatcg taataaaatc cagtattatg atcccaatat tctaaatcaa
     1141 ttttattccg tagttcttta gcatgcttga gccacccttc ctgattatga ctatctccta
     1201 caactcctgc taaatcgctt ccgattttca gactttcata gaataatgct tgaacgtcat
     1261 ttgcactttt ccttctatca atatgatcca tccacgttga gtcttggata ggcagttttt
     1321 ctgcaacccc tgtaaacccg tggtcaacta atccatctcc gtcctcgtcc tttaataatc
     1381 cccagttgac aagatcgatg atagatctcc atctctccgt taaaaaatgt acatcacctg
     1441 tacaataaac gtattcgcgt attgcccaag gaaatagaaa cgtagaatct gctgacccga
     1501 atgtggtact atgaagaaag gatttaccac tgatcagcat tggcaactcc ccttttattg
     1561 cagatttcga agtctttctt gcctgatgtc gcaagaagtt ttctatgact ctaaaaacga
     1621 aacgataatc accgaccgac aaataaccta ttaatgacca ccctgtatcc ctagcccagt
     1681 agttaggaaa ccttggaaga cctgcgcaaa tcccagcacc gagttgatcg tactcagcct
     1741 ttaaatactc catgcttacc ttcgcctttt gaaaagccct agctaacttc aagatggtat
     1801 a
//
LOCUS       DATLQL010000481         1281 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_301580, whole genome shotgun sequence.
ACCESSION   DATLQL010000481 DATLQL010000000
VERSION     DATLQL010000481.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1281)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1281)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1281
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_301580"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..435
                     /locus_tag="VNB68_04945"
     CDS             <1..435
                     /locus_tag="VNB68_04945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase"
                     /protein_id="HVD36728.1"
                     /translation="MKMRNVESEGMITVTPRQLEGLVRLATARARLLLKDKVETDDAE
                     RAIYLIQRMLETAGVDVNTGKVDLGVLHGKPHSEVSKLKVFMDVFHGLSGEDKNDVEE
                     KNFVYELVKTGKFTEDEATVYIKKAMQNGQIYERKTGFYAKA"
     gene            597..1184
                     /locus_tag="VNB68_04950"
     CDS             597..1184
                     /locus_tag="VNB68_04950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36729.1"
                     /translation="MSTSTRKDRKEDENTSVPSPSQIQREQQQAVNKALDETKDEIKV
                     ATREAARDIPQYTQRLGDIQEQTIQTTREIADNYIESQKEIISIYQSVWTPFIENANS
                     RFWNYWSISPKGIAETYGTVISSFADNVISATRLTNNAVSANMELFSTALQQTKDNSK
                     EFSRLGINAAKVFNEASNEIATTGFTAVETSRQRR"
BASE COUNT          479 a          214 c          265 g          323 t
ORIGIN      
        1 atgaagatga gaaatgtgga gtctgaaggg atgattactg ttacccctag gcagcttgaa
       61 ggtttggtca gacttgctac tgcccgggcg agattgctat taaaagacaa ggtagaaacg
      121 gatgatgctg aacgtgcaat atatcttatc caacgaatgc tagaaactgc aggagtggat
      181 gttaatactg gaaaagttga ccttggcgtc ctccatggaa aaccgcacag cgaagtttca
      241 aaactgaagg tctttatgga tgtgtttcac gggttgtctg gggaagacaa aaatgacgtc
      301 gaggaaaaga attttgtgta tgaattggta aaaacaggca agtttaccga agatgaagct
      361 acagtttaca ttaaaaaggc aatgcaaaat ggacagattt atgaaagaaa aacaggattt
      421 tatgccaagg cgtagagagc ctaatcctta ttatcttcta tacagtagct aagcgtagac
      481 aaaccggttc gctattctaa tttttacctt acttgttgta agatggcggt ttattatggt
      541 atttaaaggt aacatatacc atgatttata taccattgtt gcctagttat attataatgt
      601 caacatcaac cagaaaagat cgtaaagaag acgagaacac atcagtacct tctccatcac
      661 aaatacaaag agaacaacag caagctgtca acaaggcatt agatgaaaca aaagatgaga
      721 ttaaagtcgc aactagagaa gccgcaagag atattcctca atatacacaa agacttggtg
      781 acatacaaga acaaaccatt caaactacaa gagaaattgc agataactac atagaatcac
      841 aaaaagagat tattagcatt tatcaatcag tatggactcc atttatagaa aacgcaaata
      901 gtagattttg gaattattgg tcgatatctc caaaaggaat agctgagaca tatggaactg
      961 taattagcag ttttgcagac aatgtaatat cagccaccag actaacaaat aacgcagtct
     1021 ccgcaaatat ggaattattc agtacggcgt tgcagcaaac aaaggacaat tcaaaggagt
     1081 tttccagatt gggcataaat gcagccaaag tctttaacga agcttcaaat gagatagcta
     1141 ctacaggttt tactgcggta gaaacatcaa gacaaagaag ataaaactag aatagcgaaa
     1201 ctaaagagat aaacgacaga ctaccttaca catttttgtg tgggctattt ttagcagcct
     1261 ataaagacta gagagaagtt a
//
LOCUS       DATLQL010000482         1481 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2609279, whole genome shotgun sequence.
ACCESSION   DATLQL010000482 DATLQL010000000
VERSION     DATLQL010000482.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1481)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1481)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1481
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2609279"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(261..1127)
                     /locus_tag="VNB68_04955"
     CDS             complement(261..1127)
                     /locus_tag="VNB68_04955"
                     /inference="COORDINATES: protein motif:HMM:NF024660.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PHP-associated domain-containing protein"
                     /protein_id="HVD36730.1"
                     /translation="MSSRIPFDCGISIGDQLEKAWKSGINVLFVTNHNTLDGYRQIVE
                     YQQNHHKFENIKIYPAEEITIYNQGHVIAYGITKEIKSGMSLEETLDEIKRQGAISCA
                     AHPFAVSNGIREKALMCDMTESFNSNNLDHFSNVVAEKFARENRLATIAGSDSYVEST
                     IGRCINTIEAENNLDSLMQGMNHGKMKIDKTEYVTKGEVFEHAHYILSCSKSLLLDYF
                     LEHHPRFFRAAKWGLDSYISNPDSKLWSVLGGLGLYLTKRASKKVNIKGYDPHVFENR
                     SWKTLISMSLVP"
BASE COUNT          448 a          302 c          268 g          463 t
ORIGIN      
        1 tacttgttca tagcaagttt tccgctgttc gggatagtac tggtaagcaa atggctattc
       61 cgagatagac gtagaaaaca acaacttagg ccggcatgat atcgcttaag ataagaatga
      121 taagaattag gtagtagtga aacgttgata atagtttagc taaactaaat ctacaagcca
      181 gtctcacaat aagtagtctc cgttgctacg ttcagaatac tcataaaggt agtgaatcac
      241 ctttctcaaa ataaatacta ttatggaacg aggctcatag aaattaaagt tttccacgat
      301 ctattttcaa agacgtgtgg atcataaccc tttatattta cctttttcga agctcgtttt
      361 gtaagataaa gccccaaacc ccccagcact gaccacaact tgctgtcggg gttagagatg
      421 taagagtcca acccccattt agccgcccgg aagaaacgtg gatgatgctc caaaaaataa
      481 tccaaaagca ggcttttgga gcaagaaaga atatagtgtg catgttcgaa gacttctcct
      541 ttagttacat attcggtctt atcgattttc attttgccat ggttcatacc ctgcataagg
      601 gagtcaagat tgttttcggc ctcaattgtg tttatgcatc taccgatagt cgattcaaca
      661 taggagtcgc ttcccgcaat cgtcgccaat ctattttccc tagcaaactt ctcagctacg
      721 acatttgaaa aatggtcaag attgttgcta ttaaatgact cagtcatatc acacataagc
      781 gccttttcac gtataccgtt agaaactgcg aatggatgag ctgcacatga gatcgcgccc
      841 tgccgtttta tttcatctaa tgtttcctcg agactcattc cagactttat ttctttggtg
      901 atgccgtaag caattacatg accttgattg tatattgtaa tctcttccgc aggatagatc
      961 ttgatatttt caaacttgtg atgattctgt tgatattcga cgatctgacg gtagccgtca
     1021 agggtattat gattagtaac gaaaagtaca ttaattccac ttttccatgc tttttccaac
     1081 tggtctccta tactaatacc gcagtcaaat ggaatacgtg acgacatgct ccgatagtta
     1141 gaaaaattgt tatgacagtg caattcagcc ctcaaaatat tagtcgtata taaacacccg
     1201 tttaattctt gcacaactat gcttaataac taaatatata gtaatatgtt tgcctattat
     1261 gtgacgtgat ggctgctggg atcacatagt tctgtctgtc cttcacttca ttcaaggaag
     1321 tatgtcaaat taaaacattc taatacgacc atttgcgtct tgtatttaaa aaagccaaac
     1381 ccattagcca gatattcttc ataggaaatg tattaccaaa gtgggaacca ttatctcagg
     1441 ctcagatcga attaacatgc ttcattttta acgatttcag g
//
LOCUS       DATLQL010000483         1103 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1899677, whole genome shotgun sequence.
ACCESSION   DATLQL010000483 DATLQL010000000
VERSION     DATLQL010000483.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1103)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1103)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1103
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1899677"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            314..>1103
                     /locus_tag="VNB68_04960"
     CDS             314..>1103
                     /locus_tag="VNB68_04960"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF024122.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HVD36731.1"
                     /translation="MSIAENRNATTVDPLPSWNQGIVKARILNFVKNVTNSENTNYIT
                     PEDRIAVFDNDGTLWAEKPTYFQGFFVLDRLEELSKSNPEISRNPQLQQLLNKNFTNL
                     QLSKKDIMSLVLLTHSNITQHEFNKRVQKWAETAHHPQTQKRFVQMVYQPMNELIDFL
                     KYNHFKTFIASGGGIDFIREALSNVYGIPPDQIIGSSIKFRYTNGTNRGNSTILREPE
                     LASFNEKEVKPENIQLHIGKVPVFAAGNSDGDLEMLRYTADNNSL"
BASE COUNT          385 a          210 c          212 g          296 t
ORIGIN      
        1 acaccaagca cccattacca ctgttgtatt cttggatcaa gtatagaacc cgtataaata
       61 gtgggcccaa gggtccccgt gcttttagaa gcgctataac gtaggtttca atagagaagt
      121 atccgaaggt agctaaaaag gttttgctag taagcgctgg aagagggact cgggtaggca
      181 ggtatcccac tttgatgtat gttacaacaa gtactattgt ctgctcatct ggcaaattga
      241 ctactactga ttcattacta agtacgtgtg gactattatt gacttataaa caagcatcaa
      301 cttcacgcag ccattgtcaa tcgcagaaaa tagaaatgcc accacggtgg atcctcttcc
      361 ttcttggaac cagggaatag taaaagcaag aatattaaat tttgtaaaaa atgtaaccaa
      421 ttcagaaaac actaactaca tcacaccaga agataggata gctgtctttg ataatgatgg
      481 aactttgtgg gctgaaaaac caacttattt ccaaggcttt ttcgtcctcg atagacttga
      541 agaactgtcc aagtcaaatc ctgaaataag tcgtaatcca cagctccaac aactacttaa
      601 taaaaatttt acaaatttgc aattaagtaa aaaggatatt atgtctctgg ttttattaac
      661 ccattccaat attacccaac atgaatttaa caagagggta cagaagtggg ctgagacggc
      721 acatcatcct cagacacaaa aaagatttgt gcaaatggta taccagccaa tgaatgaact
      781 cattgatttt cttaaatata atcattttaa gacattcata gcatcaggtg gtggtataga
      841 cttcataaga gaagcgcttt caaatgtgta cggaatacct ccagatcaaa taataggcag
      901 tagcataaaa ttcaggtata ctaacggaac caatagagga aattcgacca tcttaagaga
      961 gccagaacta gcttctttta acgaaaagga agtaaaacca gagaacattc agctccatat
     1021 aggaaaagtg cctgtatttg ctgctggaaa ttcggatgga gatttggaga tgcttagata
     1081 tactgctgat aacaacagcc tcg
//
LOCUS       DATLQL010000484         1357 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_836804, whole genome shotgun sequence.
ACCESSION   DATLQL010000484 DATLQL010000000
VERSION     DATLQL010000484.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1357)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1357)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1357
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_836804"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1134)
                     /locus_tag="VNB68_04965"
     CDS             complement(<1..1134)
                     /locus_tag="VNB68_04965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36732.1"
                     /translation="MYSVNSLFIGIFSNGDVLIQDDIKPKVNVMELSVKLLGENVTNL
                     SIKNYSSHELPYYVNVNSNELKIKPQGSSQIRITYETSTLVDKVGRLWTFSVNSTSPF
                     TLKLPNDVVVTSLGEHPPRLIRRLGGQELLTFDPGRAIVKYILGYIGTKEQAETAINS
                     AEMAIADTEKSHQGIRMDEAIKKLEQSKISMNRGNFPEAESLATNASDLLNKLSSDFE
                     LAKNSISAATIHMKDASINNIDLTQADKFISKSRRQFASGNYTAAAEFARMAKENIVS
                     QAGNNEQNFTQAFAIVFGIVLIIAFVLLLYFKKFRYIIHIRYPKKSSRVADQDDSHGT
                     RNKGSRLTDEMTKYSTAITTESVREDVSQPMQESEIYRRVNELI"
BASE COUNT          371 a          262 c          261 g          463 t
ORIGIN      
        1 aatgagttca tttacacgtc gataaatttc tgattcttgc attggttgtg acacgtcttc
       61 tctaacactc tcggttgtaa tagcagtact gtattttgtc atttcatcag ttaaacgaga
      121 ccctttattg cgggttccat gtgaatcatc ttgatcagca actcttgatg acttttttgg
      181 gtaacgtatg tggataatgt atctaaattt tttaaaatat agcaataaga caaatgctat
      241 tattagaacg attccaaaga ctattgcaaa ggcctgtgta aaattttgtt cgttatttcc
      301 agcttgtgaa acgatattct cctttgccat tctcgcaaac tctgctgcgg ctgtatagtt
      361 cccagaagca aattgcctcc tcgatttaga aataaattta tctgcctgag tgagatctat
      421 attatttatc gatgcatctt tcatatggat cgttgcagcg ctaattgaat tcttggcaag
      481 ttcaaaatcg ctagagagtt tatttagtag gtcggaagca ttggttgcaa gactctcggc
      541 ttcaggaaaa ttgcctctgt tcatcgaaat tttagattgc tccagttttt ttattgcctc
      601 gtccatacgt attccttgat gacttttctc cgtatcggca atggccattt ctgcagaatt
      661 aattgctgtt tcagcttgtt ctttcgtccc aatatatccc aggatatact tgactatggc
      721 ccttcctgga tcgaatgtaa gcaattcttg tccacctagt cttcgtatca agcgaggtgg
      781 atgttctccc aaacttgtga cgacaacatc atttggcaat ttgagcgtaa atggggaggt
      841 cgaatttacc gaaaatgtcc agagcctgcc cactttgtcg acgagtgttg acgtctcgta
      901 ggtgatcctt atttgggatg aaccttgggg tttgatctta agctcatttg aattcacgtt
      961 cacatagtat ggcaattcat gagaagaata attcttaatc gagagattgg taacgttttc
     1021 tcccaatagc tttacagata attccattac atttacttta ggttttatat catcttgtat
     1081 caagacgtca ccgttagaaa atatcccaat gaataacgaa ttaactgagt acatttcctc
     1141 ttcggcttct gttcttgcgt tcagaacaaa gcttccgcag aggagtagca tcagagttat
     1201 acaagtattg aaatgaaacc tcctccaact tgggctatga caacccacgt ttatatcaga
     1261 cccataaaat gatataagct ttatcagagg gtacaattgg tttagtgtga ttgggggaac
     1321 tgtttatagg aacattttca gataactgaa atagaac
//
LOCUS       DATLQL010000485         1791 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_836863, whole genome shotgun sequence.
ACCESSION   DATLQL010000485 DATLQL010000000
VERSION     DATLQL010000485.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1791)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1791)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1791
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_836863"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            81..347
                     /locus_tag="VNB68_04970"
     CDS             81..347
                     /locus_tag="VNB68_04970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36733.1"
                     /translation="MNSTQNGSKLIFAHQRSQNITPDILVKSFWVSTCLALIFTLPPL
                     AVFLSLVHGNNNILMGSILGFGLHFILFAFSGKISNALSSLLDY"
     gene            482..1534
                     /locus_tag="VNB68_04975"
     CDS             482..1534
                     /locus_tag="VNB68_04975"
                     /inference="COORDINATES: protein motif:HMM:NF014094.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATPase subunit"
                     /protein_id="HVD36734.1"
                     /translation="MSKISMPSKIFGTVLSHGLRGRMLTKGELQTLAESRDMEELVTR
                     IKNTVYLDAFAKLSRPYNAEKIEGALREYLVNTHAKMVNVTGGAGILNAYFVKYITWN
                     LKIVLKGKALGKSYEELLPKINLRAEELVGRRDIVIKALVAKNLEEAVAATAGTEFGE
                     DAAKAATVYKDKGDMRIFDTYLDHVFYHDLGRAITSESQSPDAKKIASTDVDSYNILS
                     ILRGKFWGLSPVAINELIISTTSKVPRDTLQKMINIEKISEAVGELANTVYKDIIPQA
                     GANDIDLIMQLEAGFESLSLKRVVSSFRSMFSVGIMLAALKLVMLEVRNLSAIASGIE
                     QKVPPETIVSRLIRVE"
BASE COUNT          579 a          312 c          361 g          539 t
ORIGIN      
        1 tttctattta tgataattga aaaaaggaga atttttatgt caatattaat attctattca
       61 taagcttgta ctataagaaa atgaattcaa cccaaaacgg ctcgaaacta atttttgcgc
      121 atcagagatc tcagaatatt actcctgata ttttagtaaa atcgttttgg gttagtactt
      181 gccttgcatt aatcttcaca ttgcctccac tcgcagtttt tttgtcacta gttcatggga
      241 ataataacat actaatgggc tccattctcg ggttcggact acatttcatt ctcttcgcat
      301 tttctggaaa gatctctaat gcacttagct ctttgttaga ttattaagta ctgatggttt
      361 tccgataatt gtattttagc ttcagcctct gattctgcgc ttgaaccagt ttaaatactt
      421 aatattaaaa tagcatatac tagtatcgat aaacgactag gatgcgtgta attgactaca
      481 tatgagcaag ataagtatgc caagtaagat ctttggtaca gttctatcac acggcctaag
      541 aggcaggatg ctgacgaaag gtgagctaca gacacttgct gaatctcgtg atatggagga
      601 actagttacc agaattaaga acactgttta cctagatgcc tttgcaaaac tctctcgtcc
      661 ttacaatgct gaaaaaatcg aaggagcgct tagagagtat cttgtaaata ctcatgctaa
      721 gatggtgaat gttacaggag gagctggaat attgaatgcg tactttgtga agtatatcac
      781 ctggaatttg aaaatagtgc taaagggtaa ggcgttagga aagtcttatg aagaattgct
      841 tcccaagata aaccttagag cagaagagct tgtcggtagg agagatatag ttataaaggc
      901 tcttgtggcg aagaatttgg aagaggcagt agcagctaca gcaggcactg aattcggaga
      961 ggacgctgct aaagctgcaa cagtctataa ggacaaaggt gacatgagaa tatttgatac
     1021 ctatcttgac catgttttct atcatgacct aggcagggca ataacatccg aatctcaatc
     1081 cccagatgca aaaaaaattg cgtcaacaga tgtagattcg tacaacatcc tttctatact
     1141 tagaggcaag ttctggggcc ttagccccgt agcaattaac gaactaataa taagtaccac
     1201 ttcaaaggtt ccgagagata cacttcaaaa aatgattaat atagaaaaga tctccgaagc
     1261 agtaggtgag cttgctaata ctgtttacaa agacattatt ccacaggcag gagctaatga
     1321 tatagatctg ataatgcaat tagaagctgg ctttgagtcg ttaagtctga aaagggtagt
     1381 cagctcattt agatccatgt tcagcgtagg aatcatgctc gccgcattaa agttagtaat
     1441 gctggaagtt agaaatctat ctgcaatagc atcagggata gaacaaaagg taccaccaga
     1501 aacgatagtt tcgaggctaa ttagagtcga atgataaaac gattatgtct tattacggat
     1561 taggtttgca gtgaatacat tctacgtcgt ctgtataaaa ccgaagcgat agaaagttat
     1621 tattgactct tcttacgcct ttgcttttga gtgataacat tatctctcca tatcagattg
     1681 gaatagagca ttttgggtac cagttttttg aattcaacgc cttctcctac ataccatttg
     1741 ggaaaccatt cataaagatg taacctgata gtttgaatat agactattaa t
//
LOCUS       DATLQL010000486         1172 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2256701, whole genome shotgun sequence.
ACCESSION   DATLQL010000486 DATLQL010000000
VERSION     DATLQL010000486.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1172)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1172)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1172
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2256701"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1172)
                     /locus_tag="VNB68_04980"
     CDS             complement(<1..>1172)
                     /locus_tag="VNB68_04980"
                     /inference="COORDINATES: protein motif:HMM:NF013086.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HVD36735.1"
                     /translation="DTLREGEFLADYERVEVLCKSAPDAVNELVNWGARFHREKDGRL
                     TQRFFGAHTYRRTVFYADWTGEEIIRVLIDQVSQRKIEIVDDVYITKLLKSGDVSGKG
                     ETAEEVKGAIGIDFKKKEIVIFECKSLILAAGGYTRVYAVSSSRIFENYGEGVALAYE
                     AGADLVDMEMVQFHPTGMVWPEKALGTLATEAIRGEGGILLNSQGERFMKNYYPERME
                     LGPRDIVARANYNEIVAGRGTEHGGVWLDVTHLSKEKILDRLPTMYEQFKKIDGIDIS
                     KDKMEVGPTAHYSMGGVVVDIKCRTKIRGLFAVGEVISQIHGANRLGGNSLLDTVVFG
                     KIAGGEAARLAKELTEIKKPEPSQLGSNINNQKEFDDEFFVVKESITFRNEIQELM"
BASE COUNT          303 a          301 c          162 g          406 t
ORIGIN      
        1 tcattaattc ttgtatttca ttacgaaacg taattgattc cttaactaca aagaattcat
       61 catcgaattc cttttggtta tttatgttag atcctagctg tgatggttca ggtttcttta
      121 tttctgttag ttcttttgct aatctcgctg cttcaccgcc agcaattttt ccgaaaacta
      181 ctgtgtccag taaactattc ccacctaaac gattagcacc atgaatctga cttattactt
      241 ccccaacagc aaataaacct ctaatctttg ttctacactt tatatctacc actactccgc
      301 ccatcgaata atgtgcagtc ggtccaacct ccattttatc cttggatatg tcaattccat
      361 caattttttt gaactgttca tacatcgtgg gcagcctgtc tagaatcttt tcctttgata
      421 gatgtgttac gtccaaccaa actcctccat gttccgtacc tctgccagcg actatttcat
      481 tataatttgc acgggctact atgtcacgtg gtcctagctc cattctttcc ggatagtaat
      541 ttttcatgaa cctttcaccc tgtgaattta gtagtatgcc tccttcacca cgaattgctt
      601 cagtagctag agtacccaat gctttctctg gccaaaccat ccctgtagga tggaactgca
      661 ccatctccat gtctactaaa tctgcgcctg cttcatacgc tagagccaca ccttctccat
      721 aattttcaaa aattctagaa ctactaacgg catagactcg cgtatatcca ccagcggcaa
      781 gtattaaaga cttgcattcg aaaatcacaa tttctttctt tttaaaatct atgccaattg
      841 ctcctttgac ttcttctgct gtttctcctt tcccacttac atcacctgat tttaataact
      901 ttgtgatgta aacatcgtct acaatttcga ttttgcgctg acttacttgg tctatcaata
      961 cacggattat ttcctctcca gtccaatctg cgtaaaatac agtccttctg taagtatggg
     1021 cgccaaaaaa tcgttgtgtt aatctaccat ctttctctct atgaaaccta gcaccccaat
     1081 taactagttc atttacagcg tcaggtgcac tcttacaaag tacttcaact ctttcataat
     1141 cagcaagaaa ctctccttca cgtagtgtat cg
//
LOCUS       DATLQL010000487         1548 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_123945, whole genome shotgun sequence.
ACCESSION   DATLQL010000487 DATLQL010000000
VERSION     DATLQL010000487.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1548)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1548)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1548
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_123945"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..180
                     /locus_tag="VNB68_04985"
     CDS             <1..180
                     /locus_tag="VNB68_04985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36736.1"
                     /translation="LSELLKKIVLPSNQLKCRNYSVCVSLSVCVRVCDEPEIIVDHNH
                     KGKKLFTLHLRKFRY"
     gene            441..1286
                     /locus_tag="VNB68_04990"
     CDS             441..1286
                     /locus_tag="VNB68_04990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S1 RNA-binding domain-containing protein"
                     /protein_id="HVD36737.1"
                     /translation="MSTPLPSPSSSLAADSEVQPLPEEGDIVVASVRDIKGHGAYVTL
                     DEYGGLTGFLSIREVATGYVRNIHRFVKPKQKVVLKVIKVNRSRKEVDTSLKQISGEE
                     RKSKLIEVKRNEKAMGFLDSIKAKLNLSDIQMKEIQDTILQNYDDVYAFFESVATKGS
                     GDAVNKLGFAEEVIKAIEEESNKIHISQNEIRGIMEISSKKPDGIEIIKSVLIDAAEG
                     TKTNPSTINIAYVGAPRYRIAVKAENFKMAEKAMSRAIERIQKGIEKNSGNFKFTREK
                     SKKNI"
BASE COUNT          534 a          272 c          316 g          426 t
ORIGIN      
        1 ctttcggaat tattgaagaa gatcgtactg ccaagtaatc aattaaagtg tagaaactat
       61 agtgtgtgtg tgtctctctc tgtgtgtgtg cgtgtgtgcg atgagcctga aataatagta
      121 gatcataatc ataaggggaa gaagctattc actttgcacc ttcgtaagtt cagatactga
      181 agtgttaggg tataggtagg atgactaagc agttgaaaat accatgtata catagtcggg
      241 gttacatccg atctcttatt ttgcaccgaa gacgattaac aaacgaccct atccgtgtac
      301 catgaatgca ttgtgtacgt cacaattaga gcgcttgtca tttaatttcc tgacaggtcc
      361 ataaacattg gtaattgctg caagacaaca attgctaacc ttaaattatg catatgcatt
      421 gtatatattg tcataagaac atgtctacac cattaccatc accatcgtca tctttagccg
      481 cagattctga ggttcaacct cttccggaag aaggagacat tgttgttgca agtgtcagag
      541 acatcaaggg tcatggagcc tatgtcacac tagacgaata cggtggactt acaggttttc
      601 tctcaataag agaggttgct actggatatg tacgcaacat ccaccgtttt gtaaaaccaa
      661 agcaaaaggt tgttctaaaa gtaataaaag ttaacaggtc gagaaaagaa gtagatacat
      721 cgcttaagca gatctccggc gaggagagaa agtcaaagct cattgaggta aaaagaaacg
      781 aaaaggccat gggttttttg gattcaatta aggcaaaatt aaatctaagc gacattcaga
      841 tgaaagaaat tcaagacact attcttcaaa attatgatga tgtctatgcc ttttttgaat
      901 cagtagcaac aaaagggagt ggagatgcgg tcaacaaact tggctttgct gaagaggtca
      961 tcaaggcaat agaggaggaa agtaacaaga tacacatttc tcagaatgag atcagaggaa
     1021 tcatggaaat ttcctccaag aagcctgatg ggatagaaat tataaaaagc gtgcttattg
     1081 atgcagcaga aggtaccaag actaacccca gtaccataaa tattgcatat gtaggcgctc
     1141 caagatatag aattgcagtc aaagcagaga atttcaaaat ggctgaaaag gcaatgtctc
     1201 gtgccattga aaggatacag aaaggaatag aaaaaaattc agggaatttt aaatttacaa
     1261 gagagaaatc caaaaagaat atctagtaaa tttcctactt caaaaggtta accaaaaagg
     1321 tcaaaagaca attgaccata tataattaag ggaaagctgc gtctctctct ctccctgtct
     1381 attttctttg ttcatggcac tatgacaaac cattgctatt tgagcctgct gctaggatag
     1441 gatttttagc gtcgctatta ttacattgaa aaatctttac cgcaatcctc attaatcaaa
     1501 agttagccta tactaatatt attgctctag gccatcatta ttagcaca
//
LOCUS       DATLQL010000488         1603 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_658954, whole genome shotgun sequence.
ACCESSION   DATLQL010000488 DATLQL010000000
VERSION     DATLQL010000488.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1603)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1603)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1603
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_658954"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            136..519
                     /locus_tag="VNB68_04995"
     CDS             136..519
                     /locus_tag="VNB68_04995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36738.1"
                     /translation="MTSLDDSSRSHNEKTRVRLYCPACTEEFVVADIDKFLSRAKFLW
                     RLLMMNIDDSRTKQKLWGTLAIINSHEGIIQDMRNTGLATDFCFRCIADLSEYYYLRK
                     RIKYMVVGNVPLPDNYGYSMIPFTK"
     gene            705..1568
                     /locus_tag="VNB68_05000"
     CDS             705..1568
                     /locus_tag="VNB68_05000"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HVD36739.1"
                     /translation="MNRKGISWSIILILGSMLLFPNYMNLVHAQSVGANNPIKNVTAL
                     SNSFGNDTDIELQNSTIHYFEDADGYLVFPLGQGNQSSKLPAVIMIHENKGLNDHIKN
                     MANLLARQGYVVLAVDLFKGEVSVDPNDTRRMVQSVRNNPEHAISNLQTALKYVSSLP
                     NVDSSKVASIGWCFGGGQSLQLALNSQDHPLAATILYYGTPLVTDKGNLSKIKWPVLG
                     IFGDQDRGIPVEKVNQFKAALEEDGITNEIHIYPGVGHAFANPSGANYAPKETQDAWQ
                     KTLSFLRTHLS"
BASE COUNT          517 a          307 c          324 g          455 t
ORIGIN      
        1 ttatttcttg tcgaattgtg tatctgtaat ttcgcaaact atcaacctca caattgcaaa
       61 agatcatagc aagatatcat taaaattaga taccgatgaa tttaaacgaa aaagccccca
      121 agccaagatt ttcatatgac ctccttagac gactcctcgc gatcccataa tgagaaaacc
      181 agagttcgac tatactgtcc tgcttgcact gaagaatttg tcgtcgctga cattgataaa
      241 ttcctatccc gtgcgaaatt cttgtggcgg ttgcttatga tgaatatcga cgacagtcgt
      301 acaaagcaaa agctgtgggg tacgttagca ataatcaatt ctcacgaagg aatcatccag
      361 gatatgcgaa atacaggact agcaactgat ttttgtttta gatgtatagc agatttgtcg
      421 gagtattact atctgcgtaa acgaataaaa tacatggtgg ttggcaatgt acccttgcct
      481 gataactacg gttattcaat gatccccttt acaaagtaga cttgaataat tagcgaccac
      541 aacaagtaac ctatcgtcta tttgaaacgt agaggccact atcgatggct gatctgtatg
      601 gactcatcca aaagggctgc ggatgaattg atccgaaact acatagtaat gtgtaactta
      661 gttacctagt aaataaatag tcggcagcgg tactgaaaag attaatgaat agaaaaggga
      721 tatcgtggag tatcattctg attctcggtt ctatgttgtt atttcccaac tacatgaatt
      781 tagtacatgc acaatcagtg ggagccaata atcctattaa aaatgtgact gcattgagca
      841 attcttttgg taacgacact gatatcgaat tgcaaaacag tactatacat tactttgaag
      901 atgcagatgg atatcttgta tttcccctgg gacaggggaa ccaatcctct aaacttcccg
      961 cagtcattat gattcacgaa aataagggat taaatgatca tatcaagaat atggccaatc
     1021 tgttggctcg acaaggatat gttgtactcg cagtagattt gttcaaaggt gaagtttcgg
     1081 tagatcctaa cgatacaaga agaatggtcc agtccgtcag gaataatcca gaacatgcaa
     1141 tcagcaacct gcaaacagcc ttaaaatatg ttagttcttt accgaacgtt gattcatcca
     1201 aagttgcatc gataggttgg tgttttggtg gaggacaatc attgcagttg gcactaaaca
     1261 gccaggatca tccattagct gccactatct tgtattatgg tacgcctttg gtcacagaca
     1321 aaggaaactt atctaagata aagtggcctg tacttggaat atttggtgac caagatcgag
     1381 gcattcctgt tgagaaagtt aaccagttca aagccgcttt ggaagaagac ggaattacaa
     1441 atgagataca tatttacccc ggagtaggac atgcttttgc taacccttct ggtgccaact
     1501 atgctccgaa agaaacacaa gatgcttggc agaagacact ttcttttcta aggacacatt
     1561 taagttagcg taaattatct taaattgaca tgacaggaaa acg
//
LOCUS       DATLQL010000489         1107 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1722268, whole genome shotgun sequence.
ACCESSION   DATLQL010000489 DATLQL010000000
VERSION     DATLQL010000489.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1107)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1107)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1107
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1722268"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..250
                     /locus_tag="VNB68_05005"
     CDS             <1..250
                     /locus_tag="VNB68_05005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36740.1"
                     /translation="SHELWRRRLRSCMYNTNDARRGCESGSESVTADDHHKPTFFKPA
                     FYMFAAGVSWCFATSSTKSNCACKSLLASHSSDGLGLK"
     gene            484..708
                     /locus_tag="VNB68_05010"
     CDS             484..708
                     /locus_tag="VNB68_05010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36741.1"
                     /translation="MAERKNTGQEKENNHTKIKAAGPDEQYLDLTSGKEPYDLTPRQQ
                     TCDVCGLTARNKEELQDHINHAHPHIPDVK"
BASE COUNT          365 a          202 c          219 g          321 t
ORIGIN      
        1 tagccacgag ctttggagaa gacggctcag aagttgtatg tataatacta atgatgccag
       61 aagaggatgt gaaagtggat ccgaatctgt tacagctgat gaccaccaca agcccacttt
      121 tttcaaacct gctttttaca tgtttgcagc aggagtcagc tggtgcttcg caacaagttc
      181 taccaagtca aattgtgcat gtaaatctct ccttgcctcc cattcatccg atggattagg
      241 tctaaagtaa taagatgctt attagccgat tgtgatctta tgtagagtaa ttcgaatagc
      301 actataataa aaaatcattt gtcaactggg gatgataata gatgtgatta ttccttagct
      361 cgctaacttc tgtgaatgtg ataaaaacag cccttatcca gtgtatcctt agacttaggg
      421 aagatgcaaa aaggtaagag ataaagatat ggtaagagga tataatggct gatactatca
      481 tatatggcgg agagaaaaaa tacaggtcaa gagaaggaaa acaaccatac caaaataaag
      541 gctgcaggac ctgatgaaca gtacttggac cttacaagtg gaaaagaacc atacgaccta
      601 acaccaaggc aacagacgtg cgatgtttgt ggcttgaccg ctcgcaataa agaggaatta
      661 caagatcata ttaatcatgc acatccacat atacctgatg taaaatagac tctatattat
      721 ctaatgctct atgatcacat attcaagaac tagagcttgg catagaaaca tataatgtgc
      781 aaatagactg tacaatagag gtttatctat aataataagt gcagcatttg aatatctttc
      841 catacgaatg ctggttggtt ctgcaccata gggtatgatt ccaaacttac tccttatctg
      901 tactttcttg tgatagtatg tcttttcttt tcagaaccga cattgttcta aagccatgtg
      961 caagcaagca tgcattgacc tgactttact tatggagtta tagctcttgc agccagattt
     1021 tctatattcc tgaatacata atgattgccg tcagtaattg gataatctgg aaagtccaat
     1081 agtacttgag ctagcatgtg taaatct
//
LOCUS       DATLQL010000490         1192 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1901166, whole genome shotgun sequence.
ACCESSION   DATLQL010000490 DATLQL010000000
VERSION     DATLQL010000490.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1192)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1192)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1192
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1901166"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            200..1099
                     /locus_tag="VNB68_05015"
     CDS             200..1099
                     /locus_tag="VNB68_05015"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HVD36742.1"
                     /translation="MKYKPSNIVIGYGSAILSAALFGSISTVAKPVLTSIDPIVLSSL
                     VCLIAGLVFTPIARQTKFKRLSGKYYFLILATAVCGAAIAPVLFFLGLTQTTAADTSL
                     LANGETVFSISFATLIFRERLRPIGYIAVCVILFGVFIVTTNLEFDNSMFALDSGNLL
                     IIGATMLWGFDNNICLIITKQIEVSRLVQIRSLVGGSILFLTVLVFRLPFNIQWTQIP
                     SVVILGVFGFALSLFLYWHSIKRIGVVKASSIVSLSAAFGLVLAAIFLKETISLYQVI
                     AVAIMLLGIRLMYSREKIVEIRY"
BASE COUNT          323 a          225 c          235 g          409 t
ORIGIN      
        1 cgaaattgtg tgatccatat catctgttcg aaataattgt gcaaatactt tcgaaagact
       61 ctaatccagt tccatgatca tgaggtctcg tccggataat gaccaattct tatatcttgc
      121 ccacaagaaa taaaaataat ctgataattc tgttccttgt ttggtgctat tacaaaataa
      181 tgaaggtgct gattgatgcg tgaaatataa gccctcaaac atagtcatcg gttatggttc
      241 agcgatttta tcagcagctc tttttggctc aatttcaaca gtcgcaaagc ccgtcctaac
      301 ttcgatagat ccaatagtgc tatcctcgtt ggtttgctta atagcaggat tagtttttac
      361 gcctatcgca cgtcagacta aatttaagcg attatccggg aaatactatt ttcttatttt
      421 agccactgct gtatgtgggg cggccatcgc accggtcttg ttctttctag gacttacaca
      481 gactactgcg gcggacacat cgctattggc caatggcgaa actgtattct caatatcgtt
      541 tgccaccctg atctttagag agagattaag accaatagga tatatcgccg tatgtgttat
      601 tttgtttggt gtattcatag taaccactaa ccttgaattt gacaactcaa tgtttgcgtt
      661 ggattcaggt aatcttctaa taatcggtgc cactatgctt tgggggtttg ataacaatat
      721 ctgtcttata atcacaaaac agattgaagt ttctagatta gttcaaataa gatcgttggt
      781 tggtgggtcg atactttttt taactgtcct cgtatttaga ttacctttca atattcaatg
      841 gacgcagata ccatcagtag tcatacttgg agtgtttggg tttgcactgt cacttttcct
      901 atattggcat agcattaaac gaatcggggt agtgaaagcg tcttctattg tgtcgttatc
      961 tgcggctttc ggcttagtcc ttgcagcaat atttcttaaa gaaacaatca gtctttacca
     1021 ggtgattgca gttgcaatca tgttactggg aatacgctta atgtattcaa gagagaagat
     1081 agttgaaata agatattgat tgggtatggc acgttgtatt ccgacaaatc cttggaatac
     1141 acgttaatcc caatcgtgtt tcggtttttg acattcatct aatccttttt ta
//
LOCUS       DATLQL010000491         2331 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_838438, whole genome shotgun sequence.
ACCESSION   DATLQL010000491 DATLQL010000000
VERSION     DATLQL010000491.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2331)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2331)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2331
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_838438"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..460)
                     /locus_tag="VNB68_05020"
     CDS             complement(<1..460)
                     /locus_tag="VNB68_05020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36743.1"
                     /translation="MSDEFWNNLDQYRELGLDAPRWIASSSDELESLAILDSFAKTKR
                     SNHLTDYSWFDVFPYSGKNPEIVRRVYNFKDFDNANILKNKRIVSLFNVHVDTLCDSP
                     ALLKMLTNFCAKINPKYRVKCVGISTTSHRESEFVLLDYIDVQRGDKIGNT"
     gene            606..1394
                     /locus_tag="VNB68_05025"
     CDS             606..1394
                     /locus_tag="VNB68_05025"
                     /EC_number="1.8.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004604 - phosphoadenylyl-sulfate
                     reductase (thioredoxin) activity [Evidence IEA];
                     GO_process: GO:0019379 - sulfate assimilation,
                     phosphoadenylyl sulfate reduction by
                     phosphoadenylyl-sulfate reductase (thioredoxin) [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoadenylyl-sulfate reductase"
                     /protein_id="HVD36744.1"
                     /translation="MDLLSSDRVNRSKPSFDQLNSISEEMESKSAKEVIRWALESYAP
                     HVALASSFGAEDAVLIDLICEIDGAHARIFTLDTGRLNQETYDVMEEVRKKYGVTIEV
                     FFPDSPQVEEMVTKKGINLMYGSIENRKLCCKIRKVDPLKRALTGLDCWITGLRREQT
                     ITRNEIKKIEIDSAHGNIVKLNPLADWTSDQIWKFIKDNEIPYNKLHDLGYPSIGCAP
                     CTRAVKPGEDSRAGRWWWENSSHKECGLHWDPVKNKSDRSSNVN"
     gene            1391..>2331
                     /locus_tag="VNB68_05030"
     CDS             1391..>2331
                     /locus_tag="VNB68_05030"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase"
                     /protein_id="HVD36745.1"
                     /translation="MNQVSILPHGGKLVNNLVTAKDLLGMTTFDVSRDIRTEVENIAQ
                     GIFSPLDGFLNEDDLQQVLREGRLTDGTAWTIPIVFDVDDHIARSLKDLGDVVLTCEG
                     ESFGIIHVKDIYRFDKDHLSTSVYGTTDTNHPGVKKVLTMKDILVSGKTEIFAVQERL
                     GIRQFRMSPLETRKEIVRRKWNTVVGFQTRNVPHNAHEMVQKAALNIYDGLFINPLIG
                     KKKTGDFTDEMIVRSYDLLIRNYYPQEKVLFATLHTEMRYAGPREAIHHAIMRKNFGC
                     THFIVGRDHAGVGEYYPPYAAHDIFKNYPDLGIEPVF"
BASE COUNT          751 a          404 c          509 g          667 t
ORIGIN      
        1 cagtatttcc aatcttatcg cctctttgta catcaatgta atctaacaaa acaaactcac
       61 tttctcgatg agaagttgtt gagatcccta cacacttgac tcggtatttt ggatttattt
      121 tcgcacagaa attggtcaac attttcaata acgctgggga gtcacagagg gtgtcaacat
      181 gcacattaaa taaagacaca attcgtttgt tttttaagat atttgcgtta tcaaagtctt
      241 taaaattata tactcttctt acgatttctg gattttttcc actataaggg aatacgtcaa
      301 accaagaata atccgtgaga tgatttgatc tctttgtttt ggcgaaagag tctaatattg
      361 caagagactc caactcatcg gaggaactcg ctatccagcg aggtgcgtct aatcccagtt
      421 cgcggtattg atctaagtta ttccagaatt catcactcat tatcttatca cttgtttaat
      481 tttcgtttat ctataatcaa tcagcataat aaataagacg agatgcctca ccaatttcaa
      541 cctattgcaa tctatttgta catgaaaaac aaataattat aaatctactg tgtgaaattt
      601 gttatatgga cctgttaagt tctgaccgtg ttaaccgttc taaaccatcc tttgaccaat
      661 taaattcaat atctgaagaa atggaatcaa agtctgctaa agaagttata aggtgggctt
      721 tggaatcgta tgcgccacat gtcgcattgg cgtccagttt tggtgcagaa gatgcagtgt
      781 tgattgactt aatttgtgag atcgacggtg cacacgctag gattttcaca cttgatacag
      841 gcagattaaa tcaagagaca tacgacgtaa tggaggaagt acgaaagaaa tatggtgtga
      901 cgatagaggt attctttcca gatagtcctc aagttgagga aatggttaca aagaagggaa
      961 taaatttgat gtatgggagt atcgagaata gaaagctttg ttgtaaaata agaaaggttg
     1021 acccacttaa gagggcactg acaggattgg attgttggat cacgggatta aggcgcgagc
     1081 aaaccattac cagaaatgaa attaaaaaaa tcgaaattga ttcagcacat ggaaacatcg
     1141 taaaattgaa tccacttgca gattggactt cagaccaaat ttggaaattt ataaaagata
     1201 atgagattcc gtataataaa ttacatgacc ttggataccc gagcatagga tgcgctccat
     1261 gtaccagggc agtgaagcct ggagaagatt ctcgagctgg caggtggtgg tgggagaatt
     1321 catctcataa ggaatgtggc ctacattggg atcccgtgaa aaataagtcg gacaggtcaa
     1381 gtaacgtaaa ttgaatcaag tatcaatcct gccgcatggt gggaaactgg taaataatct
     1441 tgttacggct aaagatttat taggaatgac aacatttgac gtaagtcgag acatacgtac
     1501 tgaagttgaa aatatagccc agggtatttt tagtcctttg gatggtttcc tgaatgagga
     1561 tgacttgcaa caagttctaa gggaaggaag actaactgat ggcactgctt ggaccatacc
     1621 catagttttt gacgttgatg atcacatagc aagaagtttg aaggacttag gggatgtagt
     1681 cttgacttgc gaaggagaaa gttttggcat aatacacgtt aaagatattt acaggttcga
     1741 taaagaccac ctctctactt cagtgtatgg gaccactgat acgaaccatc caggtgtgaa
     1801 gaaggtactt acaatgaaag atattcttgt aagcggtaaa actgaaattt tcgcggttca
     1861 ggaacgattg ggaataagac aatttaggat gagtccccta gagacacgaa aagaaattgt
     1921 acgcagaaaa tggaataccg ttgttggatt tcagacacgg aatgttcccc ataatgccca
     1981 cgagatggtg caaaaggctg cactcaatat ctatgacgga ctgttcatta atcccttgat
     2041 cggaaagaag aagacaggag actttacaga tgaaatgatt gtaaggtctt atgatctttt
     2101 gatccgaaac tattatccgc aggaaaaggt attgttcgca actcttcaca cagaaatgag
     2161 atacgcagga ccacgagagg ccatccatca tgcaataatg cgtaagaact ttggctgcac
     2221 tcattttatt gtcggtaggg atcatgcagg ggtaggtgag tattacccgc cttacgctgc
     2281 acatgatata ttcaagaact atcctgattt gggtattgag cctgtattct t
//
LOCUS       DATLQL010000492         1041 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_659723, whole genome shotgun sequence.
ACCESSION   DATLQL010000492 DATLQL010000000
VERSION     DATLQL010000492.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1041)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1041)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1041
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_659723"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(332..>1041)
                     /gene="nadE"
                     /locus_tag="VNB68_05035"
     CDS             complement(332..>1041)
                     /gene="nadE"
                     /locus_tag="VNB68_05035"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR00552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008795 - NAD+ synthase activity [Evidence
                     IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NAD(+) synthase"
                     /protein_id="HVD36746.1"
                     /translation="ISNEVRRRKKGGVVIGLSGGLDSSLAAVLSVKALGNKRVFAFIL
                     PEGKLTPRTDLANAQKIVNSLKIQAFTVDIVRSKINLLKFLPRHRLAGGNLSSRLRMA
                     ILYYYANVNNLLVLGTSDKSELMLGYFTKNGDGAADVFPLGDLYKTDVRKLAIELGLP
                     EALVNQPSSPRIWAKQTAESELGLPYDKIDEILRALEKNLLKECRANKSDIKKMMTWI
                     NKTQHKREFPPICKINQ"
BASE COUNT          300 a          217 c          179 g          345 t
ORIGIN      
        1 tttacttcgt taggggttat ggcattactc atatttctcc tcaagtagca gtactttgct
       61 ttcttttatt cttattcggg acccgagaaa atgatttctg ttgagatacc ttcacatatt
      121 tatatgcaaa gaaagcagca agactcaagt tcggaagcga aaagtagaaa aatgttcgag
      181 aggatgtcat aagaaacacc actaaaccaa agaccgtaac tgctgatgca atgatcaata
      241 gaatttttaa ttgtgatctt gatactggca acatttcaga tgataatgac aagtataaaa
      301 ataacatgat gccaccagta ttcccgtacc cctactggtt aatcttacag ataggtggaa
      361 attccctttt gtgttgagtt ttatttatcc atgtcatcat ttttttaatg tcactcttat
      421 ttgctctaca ctcctttagg aggttttttt ctaaggctct cagaatctcg tcgatcttgt
      481 catacggaag tcctaattca ctttcagcag tttgttttgc ccagattctt ggactgcttg
      541 gttgatttac cagggcttct ggcaacccta attcaattgc caattttcgt acatctgttt
      601 tgtacaaatc ccctagaggg aatacgtcag cagctccatc accattcttt gtgaaataac
      661 ccaacattaa ctcgctcttg tcagatgtgc ctaatacaag tagattgttc acattcgcat
      721 agtaatataa aattgccatt cttagtctgg aagaaagatt tccaccagcg agtctatgtc
      781 gtggcaagaa tttcaagaga ttaatcttgg atcgaactat atcaactgtg aatgcttgaa
      841 tttttaaact attgactatt ttctgtgcat ttgccaaatc agttcgcggc gtaagttttc
      901 cttctggaag aataaatgca aagactctct tgttgcctaa tgctttcaca gataaaacgg
      961 ctgccaaaga agaatcaagt cccccgctaa gtcctattac aactccaccc ttctttctcc
     1021 gcctgacttc gttagaaata a
//
LOCUS       DATLQL010000493         3449 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1901452, whole genome shotgun sequence.
ACCESSION   DATLQL010000493 DATLQL010000000
VERSION     DATLQL010000493.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3449)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3449)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3449
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1901452"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1058
                     /locus_tag="VNB68_05040"
     CDS             <1..1058
                     /locus_tag="VNB68_05040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="acetate--CoA ligase family protein"
                     /protein_id="HVD36747.1"
                     /translation="VDIVGDADYNRFEKVLEEVVSNPNVGSIVTMCTPSATLDYDELA
                     GTIVKTTAGSGKTSLASLMGLAEGTENKQILSDGGIPHFPYAEPAIRTLKAMYEFSDW
                     LGRPEIRIKQFNVDKEKVRQIFINVRKSGRTNLLEEEGYEILSAYGFPRPKSFVANTA
                     EDCVKAAREVGYPVVMKIVSKDIIHKSDAGGVKVRLLNDEEVSQSFEEIMSNARKYKQ
                     DAEIKGVLVQQMIESARETILGAKHDPLFGPLIMFGLGGIYVEVLKDVIFRLAPIDER
                     EAINMIESIKTAKLLKGVRGQKPSDTNALVDCLLRLSQLVTDFPEIEEFDMNPLLVLE
                     EGKGACAVDVRIGLGNK"
     gene            complement(1076..1894)
                     /locus_tag="VNB68_05045"
     CDS             complement(1076..1894)
                     /locus_tag="VNB68_05045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36748.1"
                     /translation="MMSGDGNLQEKKLRGSGGFVLAYVNDDEQKKGNLGGPELFLAGI
                     GRLPSERFVKYHCNKCDKDFEGSPAIRYDNPNEDLGEDVILVEKGEYKCHACNTIIAQ
                     YRKFDSASNPSQNNSNPHVEELQSEASTESDEAPTKILEVDNNSQPVMVSDNSKSGFV
                     SIESLLGMPAYDCDAMLVGSIKEIGLRRSTRGKMEINFKVSKDQKTNDNEPVEVSWNS
                     ISKIGDIILLGETTDEIQSQDNAGAQKVRGKCPSCSYVNETDAVYCADCGKKID"
     gene            2112..3434
                     /locus_tag="VNB68_05050"
     CDS             2112..3434
                     /locus_tag="VNB68_05050"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HVD36749.1"
                     /translation="MTSFQELGLSAEVLRALNENGFKDPFPIQELSIPLILKGMDVIG
                     QAHTGTGKTAAFSLPILNNIKRNGPIQALILVPTRELAMQVTNEIRKFSKYVGIRTLA
                     VYGGQSMSLQITQLRKGVQIVVATPGRLIDHVKRGTIQLEAAKFVVLDEADRMLDMGF
                     IDDIKFILFYVDEDRQTCLFSATIPPEISRLAQDYMKNPHEVKLNEEEISLDTIDQSY
                     LIVEERQKFKHLCNFIKSRDEKQTIVFAATKQRTQRLAIELKQQGLRAITIHGDLSQK
                     QRDDSMHRFRTGSEDILVATDIAARGIDVPAIGHVINYDIPDDPLIYFHRIGRTARAG
                     GTGKAISLVSQDRVDDFTRILKNTELPIKRLNDEMGIEVPRIQSHPRTNWRRNSGYGG
                     RYGSGGGYRNRQGSNRFSSADTSRRRYGYGARSERRPSYNQRSSYDRM"
BASE COUNT         1111 a          624 c          723 g          991 t
ORIGIN      
        1 ctgttgatat cgtaggtgat gcagattata atcggttcga aaaagtactg gaagaggtag
       61 tttcaaatcc gaacgttggc tcaattgtta ctatgtgtac tccttccgca acgcttgatt
      121 atgatgaact agctgggact atagttaaga cgactgctgg ttcaggtaaa acctcactag
      181 cttcattaat gggccttgca gaaggtacag aaaacaagca aattctctct gatggaggaa
      241 ttcctcactt tccttacgca gagcctgcta tcagaaccct aaaagcaatg tacgaatttt
      301 cggactggct gggaagaccc gaaataagga taaagcaatt caatgttgac aaggaaaaag
      361 taaggcaaat cttcattaac gtaagaaaat ctggtaggac taaccttctt gaagaggaag
      421 gatatgagat tctttctgcc tatggatttc caagacccaa gagttttgtg gccaatactg
      481 cagaagattg tgtaaaggcg gctcgagaag taggttatcc cgtagttatg aaaattgttt
      541 caaaagacat aatccacaaa tcggatgcag ggggagttaa ggtcagactt ctaaatgacg
      601 aggaagtatc acaatctttt gaagaaataa tgagtaacgc tagaaaatac aaacaagacg
      661 cagaaataaa aggcgttctt gttcaacaga tgatcgaatc tgcaagggaa acgatattag
      721 gtgcaaaaca tgatccgcta ttcggtccat taataatgtt cggactgggt ggaatttatg
      781 ttgaagtact taaggatgtt attttccggt tagctcccat agatgaacgg gaagcaatta
      841 acatgataga atcaataaaa actgcgaaat tactaaaggg agttagagga caaaaaccat
      901 ctgataccaa cgcacttgta gactgcttgc tgcgtctctc acaactagta actgactttc
      961 ctgaaattga agaatttgat atgaatcctt tgttagtatt ggaagaagga aagggggcct
     1021 gtgcagtgga tgttaggata ggtcttggaa ataaatgaag ttaagggcac aaatttcagt
     1081 ctatcttttt tccacaatca gcacagtata cagcgtctgt ttcattaaca tagctacaag
     1141 atggacactt accgcgcacc ttctgagctc cagcattatc ttgagattgt atctcatctg
     1201 tagtttcgcc aagaagaatt atgtctccta tttttgaaat gctattccat gaaacctcaa
     1261 caggttcatt atcgtttgtt ttttgatcct tagaaacttt gaaatttatt tccatcttac
     1321 cacgagttga tcttcgtaat ccgatttcct tgatgctgcc taccaacatt gcatcacagt
     1381 catatgcagg cattccaaga agtgactcta ttgaaacaaa tccgcttttg ctattatcag
     1441 ataccatgac aggttgggaa ttgttatcaa cttcaagaat ttttgttggt gcctcgtctg
     1501 actccgtaga tgcctcggat tgcagttctt caacgtgagg atttgagttg ttctgtgaag
     1561 gattagaagc cgagtcaaat tttctgtatt gtgctattat tgtattacat gcatgacact
     1621 tatattcgcc cttctcaact aagattacat cttccccgag atcttcattg ggattatcgt
     1681 atctgatggc aggagaacct tcgaaatcct tgtcacattt gttacagtga tattttacaa
     1741 atctttctga tggaagtcta cctataccag ctaagaacaa ctctggtccg cctaggttac
     1801 cttttttttg ctcatcatca ttaacgtaag cgagtacaaa gccacccgag ccacgcaatt
     1861 ttttctcctg taaattacca tccccactca tcatgttttt atagatattt tctgaagtta
     1921 tttaaaacat tcttctcacc cagtaatgtc tgttaatcct tttttagatt cgcatacctt
     1981 atatccctct attattacac tataagtata caaaggaagc acggcggatt tgtaaagtaa
     2041 tgatatttgc ttttcacgtc atccgtaact tttgttacaa atctgaagaa ataaaaaagg
     2101 aataagataa aatgacatca tttcaagaat taggtttaag tgcagaagtg ctaagggcat
     2161 taaatgaaaa tggattcaaa gacccctttc ctatccagga attatccatc ccgctgattt
     2221 taaagggtat ggatgtaatt ggtcaagctc atacagggac agggaagacc gctgcgtttt
     2281 cacttcccat tttgaataac atcaaaagaa atggaccgat acaggcgttg atattggttc
     2341 caacgagaga attagcaatg caggtaacca acgagatcag gaagttttcc aaatatgtag
     2401 ggataaggac tttggctgta tatgggggac aaagcatgtc attgcaaatt actcagttaa
     2461 gaaaaggagt gcagattgta gttgccacac ctggtagatt aattgaccat gtaaagcgag
     2521 gtacaattca gctggaagca gctaaatttg ttgttcttga cgaagcagat agaatgctag
     2581 atatgggttt cattgatgac attaaattca tactttttta cgttgacgaa gacaggcaga
     2641 cttgtttatt ttctgcgaca attcctcccg aaatatcaag gctggcacaa gattatatga
     2701 aaaatcctca cgaggtgaag ctcaatgaag aggagattag cttagatact atagatcaat
     2761 cctacctgat tgtcgaagaa agacaaaaat tcaaacatct ttgcaatttc ataaaaagta
     2821 gagatgaaaa acaaactata gtttttgctg ccacaaaaca aagaacacag cgattggcaa
     2881 ttgaactgaa acaacagggc ctcagagcaa tcacaattca tggtgatttg tcacagaagc
     2941 aaagagatga ttcgatgcac cgattcagga caggcagtga agatatcctt gtcgccaccg
     3001 atatagctgc acgaggaatt gacgttcctg ctattggaca tgtaatcaac tatgatattc
     3061 ctgatgatcc attgatatac ttccatagaa taggtagaac agctagagcg ggtgggaccg
     3121 gcaaggcaat ttctttagtt tctcaagata gagtggatga ttttaccagg atattgaaaa
     3181 atactgagct tccaatcaaa agattgaacg atgaaatggg tatcgaggta ccaagaattc
     3241 agagtcatcc aagaaccaat tggaggagaa attcgggtta tggtggtaga tatggaagtg
     3301 gaggtggata cagaaacagg caaggatcca atagattttc tagtgctgat actagcagga
     3361 ggagatacgg atatggagca cgttctgaga gacgacctag ctataatcag agatctagct
     3421 acgacagaat gtagttaaga gaaaataat
//
LOCUS       DATLQL010000494         1358 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1173369, whole genome shotgun sequence.
ACCESSION   DATLQL010000494 DATLQL010000000
VERSION     DATLQL010000494.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1358)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1358)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1358
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1173369"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..753
                     /locus_tag="VNB68_05055"
     CDS             <1..753
                     /locus_tag="VNB68_05055"
                     /inference="COORDINATES: protein motif:HMM:NF018533.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36750.1"
                     /translation="NIVISFSSGIFLRNHMMMWGKWRIYDRTAFDQGLAHPPPRSVWR
                     SKKAVINTDGSSNGNGQTIDVRKDSRVRLVLLTSNHAVVQFNGPVIQFLNNHPSSVTP
                     MCLLGPDPLKGTYDNKGVLKRLEERNERIVADLLLDQTFVAGVGNMYKSEILFQVGLC
                     PFIKTSVISKEKKVRLINQIPKTLWYGYYNIGKTRPIRDKDGQISKWTNNYWVFRRAG
                     HICWVCGKSKIQMDRKRTRRVTYWCPNCQNCS"
     gene            1008..1211
                     /locus_tag="VNB68_05060"
     CDS             1008..1211
                     /locus_tag="VNB68_05060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36751.1"
                     /translation="MNTLIYIALVIIVIIVIVVLLRFLFGVLFIIPMSIDHQVGMLPV
                     IRGIPSSSLIQYNPSASNIDNVL"
BASE COUNT          439 a          237 c          283 g          399 t
ORIGIN      
        1 aacatcgtga tttccttttc atctggcatt ttcctacgaa atcatatgat gatgtggggt
       61 aaatggagga tttatgacag gactgcattt gatcaagggc ttgcgcatcc tcctcccagg
      121 agcgtatggc gtagtaaaaa agctgtcata aatactgacg ggagttcgaa cggaaacgga
      181 caaacaatag atgttagaaa ggattctcgt gttagacttg tacttctcac ctctaatcac
      241 gcagtagtac aatttaatgg gcctgttatt caattcttga ataatcatcc atcttctgtt
      301 accccgatgt gtttgttagg acctgatcca ttgaagggaa cgtatgacaa taaaggagtt
      361 ctgaaaagac ttgaggaaag gaatgaacgg atagttgctg acttattact agatcaaacc
      421 tttgttgcag gcgtaggtaa catgtataaa tctgaaattt tattccaggt tgggctgtgc
      481 ccatttatca aaacaagtgt aatttcaaag gagaaaaagg taagactaat taatcaaatt
      541 ccaaaaactc tatggtacgg atactacaat atcggcaaaa cgaggccgat acgtgataag
      601 gacgggcaaa taagtaaatg gacaaacaac tattgggtat tcagaagagc gggacatatt
      661 tgttgggttt gcggtaagag caagattcag atggacagga aaagaacacg ccgagtaact
      721 tactggtgtc ctaattgtca gaactgttca taggtttcca tacctgccaa tggatcagta
      781 gttaacaatg atagatacaa gatagcgtat ttcgtagata ttcagccaga ttcacttttt
      841 atggtcttct tagtcttcca gtctctactg caatctacaa tcaatatcag caaatactaa
      901 gttgtattta gtataagaca taaattgact gtcagatttc gaataaaaaa atatgatata
      961 gcaaatgaaa ttgacttaaa ctttactgca taaatacgag catggtattg aacacgctca
     1021 tatacatcgc attagtaatt atcgttataa tcgtaattgt tgtcctgctt aggtttctat
     1081 tcggtgtcct gtttatcatt cctatgtcca tagatcatca ggtgggtatg ttacctgtta
     1141 taagaggtat cccttcatct tcgttaatcc aatataaccc aagtgcttcc aacattgaca
     1201 atgtactgta atgaaacgat caaggaaaat acatagcatg ccgagaggct gagatggtga
     1261 gatcaaggga ggaaatatcc aaatcaatag atacggatca tgtattcccg gggaaatgct
     1321 tccggttttt gtcaagacga ttgggaatca agaccctt
//
LOCUS       DATLQL010000495         1988 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2258330, whole genome shotgun sequence.
ACCESSION   DATLQL010000495 DATLQL010000000
VERSION     DATLQL010000495.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1988)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1988)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1988
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2258330"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..323
                     /locus_tag="VNB68_05065"
     CDS             <1..323
                     /locus_tag="VNB68_05065"
                     /inference="COORDINATES: protein motif:HMM:NF014104.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phosphopantothenate/pantothenate synthetase
                     family protein"
                     /protein_id="HVD36752.1"
                     /translation="SGRRFVDKSGILNADTVFLAIEDGDRTEVLTSLGKTVIAVDLNP
                     LSRTAQSSHVTIVDNIIRAIPNMIDFATKFAKKEISELSALVSEFDNKWNLVQSTKLI
                     RHGL"
     gene            325..1221
                     /gene="panB"
                     /locus_tag="VNB68_05070"
     CDS             325..1221
                     /gene="panB"
                     /locus_tag="VNB68_05070"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003864 - 3-methyl-2-oxobutanoate
                     hydroxymethyltransferase activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HVD36753.1"
                     /translation="MSSNDKIDINNQVPILTKLTVNDIIRKKNEGRRIAMITAYDYCM
                     SRICDYAGIDIILVGDSAATVMIGYKNTRKTTMEEMLVFCRAVSNGTKRALIVGDMPF
                     GSYQTGMDNAVINAVRFMRTGCDAVKLEGGVEVVSIVKRLTEMGIPVMGHIGLKPQTT
                     SLTRGFNSHGATVEEAVQLIEESKALEEAGAFAIVLEKVTSEVSEIITSRSHIPIIGI
                     GSGPMIDGQVLVLHDLLGLYNEFNPKFIKRYLELSKLISKAITQYCSEVREGIFPNEG
                     HTYHMQKGENEKLQKMVGRQQN"
     gene            1223..>1988
                     /gene="coaBC"
                     /locus_tag="VNB68_05075"
     CDS             1223..>1988
                     /gene="coaBC"
                     /locus_tag="VNB68_05075"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004632 - phosphopantothenate--cysteine
                     ligase activity [Evidence IEA];
                     GO_function: GO:0004633 - phosphopantothenoylcysteine
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0015939 - pantothenate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HVD36754.1"
                     /translation="MSSKGIKTIKSGDGAHPSKEIVGSESQLLRSKRIVLCITGSVAA
                     YRAIDLSRLLMRHGAEVYPVMTTTTSSKFLTEEMMQWATGNKVVTTLTSDLEHIDLAD
                     YDKSDMVIVYPCTANTIGKFVNGIDDTSVTSVLSVAFGSRIAILIAPAMHRSMYENEI
                     IRNNIDRLKSFGVFFVEPTMVENKAKVPSPNEVLDRVFEIFSYNIVHSDKKILVTAGA
                     TSERIDPVRVLTNLSSGKMGISIAEIAAKQGMEVTLI"
BASE COUNT          645 a          321 c          462 g          560 t
ORIGIN      
        1 caagtggcag gagattcgtg gataaaagtg gaattttgaa tgccgatact gtatttcttg
       61 caatcgaaga tggagacaga acggaagtgc ttacttctct tggaaagact gtgattgctg
      121 ttgatttaaa tccgctatcc agaactgcgc aatcatcgca tgttaccata gtcgataaca
      181 taatccgggc cattccaaat atgattgatt ttgccacaaa atttgcaaag aaagaaatat
      241 cagaattgtc ggcactcgtg tcggaatttg ataataaatg gaatttagta cagtcaacca
      301 aattaattag gcatggattg taaaatgtcg tcaaatgaca agatagacat caacaatcaa
      361 gtacctattt taacgaaact tacggttaat gatataataa ggaaaaaaaa tgaggggcgt
      421 aggattgcaa tgattacagc ctacgactat tgtatgtcaa ggatttgtga ctatgcaggc
      481 attgacatta ttttggttgg agacagtgct gccactgtca tgattggcta caaaaacaca
      541 agaaagacaa ctatggaaga aatgttagta ttctgcaggg cagtaagtaa tggaacaaaa
      601 agagctctta ttgttggaga tatgcctttt ggatcttatc aaactggaat ggacaatgct
      661 gttatcaatg cggtcaggtt tatgcgtact ggctgtgatg ctgtaaaact cgaaggaggt
      721 gttgaggttg tatcaatagt taaaagattg acagaaatgg ggattcctgt aatgggtcac
      781 ataggtttga aacctcagac aacctcatta actcgtgggt ttaattcgca tggagcaacg
      841 gtagaggaag cagtccaact tatagaagaa tccaaagctt tggaagaagc tggagcattt
      901 gcaatagttc ttgaaaaagt aacaagtgag gtatctgaaa tcattacaag ccgaagtcac
      961 attccaataa tcggtatagg ttcaggacca atgatcgatg gacaggtttt agtgctgcat
     1021 gatttgctcg ggctttacaa tgaattcaac cccaagttta tcaagagata tttagagcta
     1081 tcgaaattga ttagcaaggc cattacacaa tactgttctg aagtcagaga gggaattttt
     1141 cccaatgaag gtcacacata tcatatgcaa aagggagaga acgaaaaact tcaaaaaatg
     1201 gtaggtcgtc aacaaaacta acttgtcgag caaaggcatc aaaactatca aaagtggcga
     1261 tggagctcat ccatcaaagg agatagtagg atctgaaagt cagttgcttc gttcgaaaag
     1321 gattgttcta tgcatcacgg ggagtgtagc tgcctatcgt gcaattgatt tgagtaggtt
     1381 attgatgcgt catggtgctg aagtttatcc agtaatgacg actacaacaa gttcgaaatt
     1441 tttgactgaa gaaatgatgc agtgggctac gggtaataag gttgttacca cccttactag
     1501 cgatttagaa catattgact tagctgatta tgacaagtcc gatatggtga ttgtatatcc
     1561 ctgtaccgct aatacaattg gaaaatttgt gaatgggatt gatgacacgt ctgttacctc
     1621 ggtactgagt gtcgcgttcg gatctcgtat tgcaattttg attgcccctg cgatgcatcg
     1681 atcaatgtat gaaaatgaaa tcattcgcaa taatatagac agattaaaat ctttcggggt
     1741 tttctttgtt gagcctacga tggttgagaa taaggcaaaa gttcctagtc caaatgaggt
     1801 attggaccga gtatttgaga tcttcagtta caatatcgtg cattcggaca aaaagatact
     1861 tgttactgct ggcgcgactt cggaaagaat tgatcctgtc agagttttaa ctaatttgag
     1921 ctcgggaaaa atgggaataa gcattgctga gatagcggct aaacagggta tggaagtgac
     1981 acttatct
//
LOCUS       DATLQL010000496         1859 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_659925, whole genome shotgun sequence.
ACCESSION   DATLQL010000496 DATLQL010000000
VERSION     DATLQL010000496.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1859)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1859)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1859
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_659925"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..287)
                     /locus_tag="VNB68_05080"
     CDS             complement(<1..287)
                     /locus_tag="VNB68_05080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36755.1"
                     /translation="MPEIWLRYGTTDVVLDIKYENLLTQISSNMQSLSDEEIKLTLSN
                     VALTDNTLLVALSGSKSVATVVRLLAESASVKGFKDTTVDVLPDLYEALRN"
     gene            541..897
                     /locus_tag="VNB68_05085"
     CDS             541..897
                     /locus_tag="VNB68_05085"
                     /inference="COORDINATES: protein motif:HMM:NF012383.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase family protein"
                     /protein_id="HVD36756.1"
                     /translation="MTSAPPSGLVFSAALAYELEKPHTYARTESKLHGTNKTVEGYLQ
                     SGSEVLLLDDVVSIGVSISKAADIISANGGIMHNFVASINREERGRSDVELNEYLSNF
                     GIYCSNRRNSSEGISK"
     gene            complement(952..1515)
                     /locus_tag="VNB68_05090"
     CDS             complement(952..1515)
                     /locus_tag="VNB68_05090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TATA-box-binding protein"
                     /protein_id="HVD36757.1"
                     /translation="MPQTKPIVSIENVVASATVNQTVNLNLVTQIFPDVEYHPDQFPG
                     LVFRLKSPKTATLIFSSGKMVCTGAKSEEQAIKAVKNVVQKLKRGGIPIEHEPQIEIQ
                     NIVASASLGGKIHLELAARVLPRSMYEPEQFPGLIHRMLDPKTVILLFASGKLVCTGA
                     KKESEVYRAVHNLHLLLEEKNLMIYEG"
BASE COUNT          538 a          371 c          357 g          593 t
ORIGIN      
        1 ttatttcgta atgcctcgta cagatcagga agtacatcca cggtcgtatc cttgaatcct
       61 ttaacgctgg ccgattcagc aagtaatcta acaacggtgg caaccgattt cgatcccgat
      121 agagccacca gaagcgtatt atcagttaat gctacattgc ttagtgtcaa tttgatttct
      181 tcgtctgaaa gcgactgcat gttagaggag atctgagtga gcaagttctc gtatttgata
      241 tccaatacta catctgttgt accgtatcga agccagatct caggcatatc taaaaattaa
      301 tgaacagttc aaataaatct attccataat atactacatt gactactgat tttgcttcag
      361 aagttgcttg gttactacat aagagcaata ccttgcaatt tggtatattc aaactccaca
      421 gtggcaagga gagcacttac tacatccaca ttcgaatctt gcagagcttt cctgaatatt
      481 tcaagcttgc gatacatgtg ttaaaggaaa tcataacgaa ttgctcgtgc atttcatcca
      541 ttgacctcgg ctccgccttc aggattagta tttagtgctg ctttagcata tgaattggag
      601 aaaccccata cttatgcgag gacagaatca aagttgcatg gcaccaacaa gacggtcgaa
      661 gggtaccttc agtctggatc agaagtattg ttattagacg acgttgtatc aattggagtt
      721 tcaatcagca aggcagcaga tattatcagt gccaatggtg gtattatgca taacttcgtc
      781 gcttcaataa atagggaaga acggggcaga agcgatgttg aattgaatga atatttatct
      841 aacttcggta tttattgctc aaatcgtaga aattcatctg aagggattag taaatgacaa
      901 tagcatggat tcactattga cacatggatt agatagcggg cttgagccag attagccttc
      961 ataaatcatt aagtttttct cctctaagag cagatgtagg ttgtggacag ccctatacac
     1021 ctcactttcc tttttagcac cagtgcatac aagcttgccg ctagcaaaca atagaattac
     1081 ggtttttgga tccagcatcc tgtgaatcaa tcctggaaat tgttccggtt catacatgct
     1141 ccgcggaaga actcgagcag cgagctccag atgaatcttt ccgcctaggc ttgcggacgc
     1201 aacaatattc tgaatttcaa tttgaggttc atgctcaatc ggaatacccc ctcgctttag
     1261 cttctgtaca acatttttga ctgccttaat tgcttgttct tctgactttg cgcccgtaca
     1321 taccatctta cctgaactaa aaattaaggt ggctgttttt ggagatttaa gcctaaaaac
     1381 gaggccagga aattgatccg gatgatattc gacgtcagga aatatttgtg taaccaggtt
     1441 caaatttact gtttgattaa ctgttgcaga cgcaacaacg ttctcgatac tgactatagg
     1501 tttagtttgg ggcatacact agagtggctt tataaatacg aactatatat acctgcgtgc
     1561 ctaaacattc tagtagattt ctccatagat cttagtgcgt attttcttac tgattcttct
     1621 gagatgtcat atctcaacga aaatggatgt atccgtgctt tttgggctca gatagactac
     1681 atttttgtac tttaatgata agatctattc cattgtaaac agttagagtt tcagtcactt
     1741 tatgaattca attccaactt tactttttta gctagctcac tcatttcaat aggttttttt
     1801 atgaaacaat ctatctctaa ggttggaaat acttctttta atgcttgata atacacttc
//
LOCUS       DATLQL010000497         1519 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1173442, whole genome shotgun sequence.
ACCESSION   DATLQL010000497 DATLQL010000000
VERSION     DATLQL010000497.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1519)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1519)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1519
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1173442"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            104..373
                     /locus_tag="VNB68_05095"
     CDS             104..373
                     /locus_tag="VNB68_05095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36758.1"
                     /translation="MGSKYQCIYYLTDMTAIMSLHQETSTSSNDGNNFTTGQSWGALR
                     KAWKGYRIAKVHNDSAKMTEYANKIRKIQTELGISVASFPNLGIA"
     gene            complement(408..869)
                     /gene="trxA"
                     /locus_tag="VNB68_05100"
     CDS             complement(408..869)
                     /gene="trxA"
                     /locus_tag="VNB68_05100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HVD36759.1"
                     /translation="MTYEDEHDDKEIMAINQRKLSELQKLATTKSAMNNITSPIILTD
                     SNFNEEVSKYSLMLVDFWAPWCGPCRMVSPVIEQLAKEYAGRVVFGKLNIDENQRVAQ
                     SFGIQSIPTMMILKNSKVVDVIVGVLPKPQIQSKLKQHLLDSKNTIGNIYR"
     gene            1116..>1519
                     /gene="grpE"
                     /locus_tag="VNB68_05105"
     CDS             1116..>1519
                     /gene="grpE"
                     /locus_tag="VNB68_05105"
                     /inference="COORDINATES: protein motif:HMM:NF013212.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000774 - adenyl-nucleotide exchange
                     factor activity [Evidence IEA];
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_function: GO:0051087 - protein-folding chaperone
                     binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HVD36760.1"
                     /translation="MEIKGSKINEDEEKEEQVEEDKADISPPKKGEEPESKKELFQLR
                     EDLRDARESAENNLSKLRYMMADFDNYRKQTEKQLSSKVEASKAEILLKFLNIRDDYL
                     RALEMVSQSKSEAVIIEGLQGILKNFDNLLNS"
BASE COUNT          486 a          267 c          308 g          458 t
ORIGIN      
        1 ttacccagcg aatgtatact aatttaatct aaatagcatt aattttgttc agaattctct
       61 catagtttta cttctttaac tcaggaattt gataaagttg acaatgggtt ctaagtatca
      121 atgcatttac tatctcacag atatgacagc tataatgtca ctacatcagg aaacctcaac
      181 gtcgtctaat gacggaaata acttcactac tggccagagt tggggagccc taagaaaggc
      241 gtggaaaggc tacagaattg caaaagtcca taacgatagc gcaaagatga cagaatacgc
      301 gaacaaaatt agaaagatcc agacagagct tggaattagc gttgcatcgt ttccaaatct
      361 agggatcgcc taaccccaac tgttttttat tttattcaat tctattttta tctatagata
      421 ttgccaatgg tatttttcga atctaataaa tgctgtttta gctttgactg aatttggggt
      481 tttggcagga caccaactat aacatccact acttttgagt tcttgaggat catcattgta
      541 ggaatacttt gtatcccgaa ggactgtgct actctctggt tctcgtcgat gttcaacttt
      601 ccaaaaacta ccctgccggc gtattccttc gctaattgtt ctatcacagg ggataccatt
      661 ctacaaggac cacaccaagg ggcccagaaa tcaaccaaca tgagggaata tttcgaaacc
      721 tcctcattaa aattcgaatc tgttagtatt atgggactgg ttatattatt catagctgat
      781 ttcgttgttg cgagcttttg caattctgag agttttctct ggttaattgc cattatttct
      841 ttatcgtcat gctcatcctc ataggtcata gattgaaatc tcattctttt agccataata
      901 tatttctagg caggtgaatg gagatgttcg ggagttattc ctccagaaaa cgctccaaat
      961 ttcaacttcc tagggaatgc tccgtatcac gggatatttg gatatatagg cgatagtcga
     1021 tagacgatat gtaattatct ggcttccgct gatttctgtt gaattaataa attgaatgat
     1081 ggaggaagta tcggtgacca aggaggagga actagttgga aataaaaggt tctaaaatta
     1141 acgaggatga ggagaaagag gaacaagttg aagaagacaa agcagatata tctcccccca
     1201 aaaaaggtga agaaccagag tcaaaaaagg agttattcca actaagagag gacctcaggg
     1261 atgctagaga atctgctgag aacaatctta gtaaattgag gtatatgatg gcagactttg
     1321 ataattatcg aaaacagaca gaaaagcaac tttcttctaa ggttgaagca agtaaggccg
     1381 agattctgtt aaagttcttg aatattagag atgattacct aagggccctt gaaatggtta
     1441 gtcagagcaa gtcagaagca gtcattattg aaggattaca aggtattttg aaaaattttg
     1501 ataatcttct taactcgga
//
LOCUS       DATLQL010000498         1730 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1723247, whole genome shotgun sequence.
ACCESSION   DATLQL010000498 DATLQL010000000
VERSION     DATLQL010000498.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1730)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1730)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1730
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1723247"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..595
                     /gene="truD"
                     /locus_tag="VNB68_05110"
     CDS             <1..595
                     /gene="truD"
                     /locus_tag="VNB68_05110"
                     /EC_number="5.4.99.27"
                     /inference="COORDINATES: protein motif:HMM:NF013322.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HVD36761.1"
                     /translation="QNYQSVLRNMPRGMDIERLILTALVNGKKHISALREIPINIRRL
                     FVHAYQAYLFNKCLSTGIKEGENVTECKVGNLCFEIEDQSNLGKLQKFVDSMNPDNVV
                     PATQLAGYSLCKFKDRFEEILFGILSEEGLTPNNFFLREMQELSVEGGFRQLPLMVKD
                     IDYEKTGGLKFRLPIGAYATILLRELMKPSNPIKAGF"
     gene            822..1466
                     /locus_tag="VNB68_05115"
     CDS             822..1466
                     /locus_tag="VNB68_05115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36762.1"
                     /translation="MLGSRDYPKLIQDKLMHIYFGGIKPKQLDSDTIDVAEAIQCNRL
                     SYYERTEPENDALPQIIQRISKLGFRDAMGSKAAEYKVENLTLIVTPDLVFEKDFVVN
                     IYPVSTLPDSVLPGEMLYTNACLFALDREVGVVVYVTPDGQLTQFFVGKSNRMFEQVV
                     RRARILSILLGERKTPVIEPSPYCLTCKYNDRCFPQQKDNSPQLLEGLFGLGKK"
BASE COUNT          559 a          313 c          366 g          492 t
ORIGIN      
        1 acaaaattat cagtctgtat tgcgaaatat gcctcgcgga atggacatag aacggctgat
       61 tttgactgcg cttgtgaatg gaaaaaagca catttcggcc ttgcgagaga taccaatcaa
      121 cattaggcga ctatttgttc atgcgtacca ggcatatctt ttcaataagt gcttgagtac
      181 tggcataaag gagggggaaa atgttaccga atgtaaagtc ggaaatttat gttttgagat
      241 tgaggatcaa tctaatttag gaaagttaca aaaatttgtt gatagcatga atcctgataa
      301 tgtggttcca gccacacaac ttgctggtta ctcgctgtgc aagttcaagg atagattcga
      361 agaaatactg tttggaatac tatcagagga aggcttgacg cccaacaact tcttcttaag
      421 agagatgcaa gaattgagtg ttgaaggagg ttttagacag ttacctctta tggtaaaaga
      481 tatcgattac gaaaagactg gaggattaaa gtttaggtta ccaataggtg catatgcgac
      541 aatactatta cgagaactaa tgaaaccatc aaatccgatt aaggccggct tttaggctag
      601 aacgacaaag atggtttcca gatctaaaat tagatgattg agtttagaag ttagacggtt
      661 agatgattga aagaaaggga aatacctcgt attcactgat tcgctgtcat aagttggctt
      721 gatgctagct agatacacgt tgttcgacct gacaccaaaa tcgaatacta gacgcaattt
      781 gtaccaaaca taaatatcac taaatgcacc ttattttatt tatgcttggc agtagagact
      841 atccgaagct aatacaagat aaattgatgc atatttactt tggtgggatt aagcctaaac
      901 agttggactc ggatacgatt gatgtagcag aggcaatcca atgcaataga ttatcttatt
      961 atgagaggac cgagcctgaa aatgatgccc ttccccagat aattcagaga atttcaaaat
     1021 taggctttcg agatgcaatg ggaagtaaag ctgcagaata caaggtggaa aatctaactt
     1081 taattgtgac tcctgaccta gtttttgaaa aagacttcgt cgtcaatatc tatcctgttt
     1141 cgactcttcc cgattcagtt cttcctggcg aaatgctcta tacaaacgca tgtttgtttg
     1201 ctcttgaccg agaagtagga gtagtagtct atgtcacacc agatggacaa ctaacgcaat
     1261 tttttgtagg aaaaagcaac cgaatgtttg aacaggtcgt aagaagggca agaattctta
     1321 gtatattgct gggcgaacga aagacgccag tcatagagcc aagtccatat tgtcttactt
     1381 gcaaatacaa tgataggtgt ttcccgcaac aaaaggacaa cagcccccaa cttctggaag
     1441 gcctctttgg tttgggcaag aaatagcaac aggagtattg ccagtatcag aggttgaggc
     1501 agcaggatta cccaaaacag taagagaatg attgtggtgc ttatccattg ttctgaatca
     1561 aacttcttaa ttacctctgt tcccactata attcaggaat tgggcgatag ccctaaattt
     1621 ttctgttgat tatatcttct acttcttgca ccaaagacta cccctcctaa tataacaaac
     1681 attaatgctg ttattgcata agttatcaac agatcggcca tgcacaatct
//
LOCUS       DATLQL010000499         1769 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_125727, whole genome shotgun sequence.
ACCESSION   DATLQL010000499 DATLQL010000000
VERSION     DATLQL010000499.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1769)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1769)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1769
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_125727"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..487)
                     /locus_tag="VNB68_05120"
     CDS             complement(<1..487)
                     /locus_tag="VNB68_05120"
                     /inference="COORDINATES: protein motif:HMM:TIGR00227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HVD36763.1"
                     /translation="MSVDGKIATRSGDSAISSIVDLKRVHRLRTTVDAIMIGIQTVLT
                     DDPMLDVRFAKTKKKNPARIIIDSTARISLDSRILKTANEIHTIVAVTTRASIAKIHK
                     IESTGAQVLVTGEKIVNIRSVFRHLERLGFNRILVEGGGEINWSVLNLGMIDEMIVMV
                     SS"
     gene            complement(512..>1769)
                     /locus_tag="VNB68_05125"
     CDS             complement(512..>1769)
                     /locus_tag="VNB68_05125"
                     /inference="COORDINATES: protein motif:HMM:NF005552.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HVD36764.1"
                     /translation="LLLENDLEFINCGYIVIGKDGLISHAGQGDFRNTNKHDKVFDGE
                     GLLACPGFVNAHTHIGDSIGKDIAIDIDLDLDQMIHPLHGLKKKILDNSDRDHIITFI
                     KSSARSMLKRGIVAFADFREGGSEGIKLLNDALFDTPIKYVTLGRPEYYFTIHPSSDG
                     EKVDRYPYKSPKETLSTNFNKTSHKILEVCDGFGISGANENSDESLNQYRKVAYGYRE
                     KSRRNIIVAIHAAESEQTVTFSVSATGKSEVQRILLNLMPDFVVHMTNASDEDITRVA
                     EQGVGIVVCPRSNGVLGVGFPRVAKMLRLGCQVGIGTDNVMINSPDMFREMDYLWKMS
                     RTIDDEFLSARDVLKMATVNGGKILKIKSGSIAPNMSADMIFFKKDHIDLAPLHNPYA
                     AIVHRADMDSIHNVMINGRLIDGEEF"
BASE COUNT          485 a          412 c          286 g          586 t
ORIGIN      
        1 ttgacgaaac cataacaatc atctcgtcga tcattccgag gttcagtact gaccaattaa
       61 tctccccacc accttcaacg agtattcggt taaaacccaa tctttccaaa tggcgaaata
      121 cactgcgaat atttactatc ttttctcctg taacaagcac ctgggcgcca gtactttcga
      181 tcttgtggat ttttgcgatt gaagctctag ttgtcactgc cacaatggta tgaatttcgt
      241 tagcagtttt cagaattctc gaatcaagcg atattcttgc agtggaatct attattattc
      301 tcgcaggatt cttcttttta gtcttggcaa atctgacatc caacatcgga tcatcagtaa
      361 ggacagtttg tatccctatc ataattgcat ctactgttgt ccgtaatctg tgaacacgtt
      421 taagatcaac aatagatgaa atggcagaat ctccacttct agtagctatt tttccatcca
      481 ctgacatcgc cgcgttgaga attacatgca attagaattc ttctccatca attaacctgc
      541 cattaatcat aacattgtga atcgaatcca tgtctgctct atgtacaatc gctgcatacg
      601 gattgtgcag aggcgcaaga tcaatatgat cctttttgaa aaagatcatg tcagcagaca
      661 tatttggggc gattgatcct gattttatct taagtatttt ccctccattt actgttgcca
      721 tcttcaatac atctcttgca gaaagaaatt catcatctat tgttcttgac attttccata
      781 ggtaatccat ttctctaaac atgtctggtg aattgatcat gacattgtcg gttccgattc
      841 caacttgaca tcctaatcgt aacatttttg cgactctagg aaagcccact cctaataccc
      901 catttgatcg tgggcatact actatcccga ctccttgctc agctactctg gtaatatcct
      961 cgtcagaagc attggtcata tggacaacga aatcaggcat gagatttaga agaattctct
     1021 gaacctcact cttccccgta gcagaaactg aaaatgttac agtctgttct gactctgctg
     1081 catggattgc cacgatgata tttcttctcg atttctctct atacccataa gctacttttc
     1141 tatactggtt cagggactcg tctgaatttt cattagcacc gctgatgcca aaaccgtcac
     1201 atacctccag tattttatga gacgttttgt taaaattggt ggacagtgtt tctttcggac
     1261 tcttgtacgg atacctatcc accttttccc catcactcga tgggtggata gtgaaataat
     1321 attcaggacg acctaacgtt acatacttta tcggtgtatc aaataaagca tcatttagca
     1381 acttgattcc ttcacttcca ccttctctga aatctgcaaa agcaacaatt cctctcttca
     1441 acattgatcg agcactgctt ttaatgaacg tgataatgtg gtctctatca ctattgtcca
     1501 aaattttttt cttaagccca tgtaatggat gaatcatttg atccagatcc agatcaatat
     1561 ctatagctat atcctttcca atcgaatcac cgatatgtgt gtgggcgttc acgaatcctg
     1621 gacatgccaa taatccttct ccgtcaaaca ccttatcatg cttgtttgta ttacgaaaat
     1681 caccttgtcc tgcgtggcta attagaccgt cttttcctat aactatatat ccacaattta
     1741 tgaattcgag atcattctct agtaataga
//
LOCUS       DATLQL010000500         2147 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2259039, whole genome shotgun sequence.
ACCESSION   DATLQL010000500 DATLQL010000000
VERSION     DATLQL010000500.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2147)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2147)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2147
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2259039"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            202..>2147
                     /locus_tag="VNB68_05130"
     CDS             202..>2147
                     /locus_tag="VNB68_05130"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose synthase family protein"
                     /protein_id="HVD36765.1"
                     /translation="MSETGGILFIIFMIIAWVMTIYTLNFHYLSYRSRRNIGHEKLAN
                     QTLNLISNSHFPDVTIQLPIYNEKYVATRLIQAVCRIDYPKDKMELQVLDDSDDETSE
                     IIDSAVEAYMRQGYNIKIIRRNSRTGFKAGALQEGMKTAKGEFIAIFDADFIPPSNFL
                     SRVLPYFGNTNIGLVQCRWGHINETFSVLTGAQAVSIDLHFLIEQKAKSTSHLFMNFN
                     GTAGIWRASCIVDSGGWHIGTLVEDLDLSYRAQLKGWKCIFVEDLIVDAELPVQMNAA
                     KRQQFRWAKGSVQVASKLLMKVICHGGISLDTKIQAFIQLTKHIINPLFLIQFLIFPI
                     LLVMNYKIQSSAWSPVLGIIIYLLIGPATYIFMIRKIWGTSWRNKALQYLFLIFFATG
                     ISINNTIAVFDALIGKKNEFLRTPKFGIVQKNQKWNNKSYIIPFTKTTLLEIFFSVYG
                     CIALLISFFSGNALLMPVIGIQTLGFIYVAYISFVQSRGKYDKKRSLHQFQFPNENNP
                     YTSTKNDGESYAKGEDVINTRSYSKSLVHTSVSRQREPSMDRKQSKLIGIGLVFFVLA
                     SGIIAYVGYQNTVYPIDKAVAYLGRAETTQTPDLFVDYVNLARQNLPREGNPVWPFAT
                     AKTDFSSIQTELDALILRGRLVSYL"
BASE COUNT          693 a          395 c          432 g          627 t
ORIGIN      
        1 tgagtggcta gacacccctg gacatccagc ctcggataaa aagccattca tgattcggga
       61 gaaagactgt atattctgta tggcctgtga aaatgtgtgt ccgcctcaat gcgtaaaaat
      121 cttcacaaaa tgatcatatt atagtttttt tcggtgacta taaatagtta ctgtactttt
      181 ttactgagag gctatctagg aatgtcagaa accgggggaa tcctgttcat cattttcatg
      241 attatagcgt gggtaatgac gatatatacc cttaactttc attatctgag ttatagatcc
      301 agacgaaaca taggccatga gaagctagca aaccagactt taaatttaat ttcgaattca
      361 cattttccgg atgtaaccat ccagcttcca atttacaatg aaaagtacgt agctactagg
      421 ttgatccaag ctgtgtgcag gattgactat cctaaagaca aaatggaact acaggtgctg
      481 gacgattccg acgacgaaac atcggaaata attgattctg cagttgaagc atatatgcga
      541 caagggtata acataaaaat tattcgtagg aactccagaa ccggctttaa agcaggggca
      601 ttgcaagaag gtatgaagac cgccaaagga gaatttatag cgattttcga tgcagatttt
      661 attccaccga gcaactttct ttcaagagta ttaccatact tcggcaacac caatatagga
      721 ttagtacaat gtcgttgggg acatattaac gaaacttttt cagttttgac aggtgctcaa
      781 gctgtatcta ttgatttgca cttcctaatc gaacaaaagg ccaaaagtac atctcatctg
      841 tttatgaatt ttaatggaac cgcagggatc tggagagctt cttgcatagt tgactctgga
      901 ggatggcata ttggtacact cgtcgaagac cttgatctga gctatagagc tcagctgaag
      961 ggatggaaat gcatttttgt agaagatcta atagtggatg cagagcttcc tgttcaaatg
     1021 aacgctgcta agcgacagca gttcaggtgg gctaagggat cagtacaagt tgcatcaaaa
     1081 ttattgatga aagtcatctg tcatggaggg atatcattgg atacaaaaat acaggcattc
     1141 attcagctga caaagcatat tatcaacccc ttgttcttga tacaattcct catttttcct
     1201 attttattgg tcatgaacta taaaatccaa tcttcagctt ggtctcctgt actaggaata
     1261 attatctact tgctaatagg accggcaacc tacattttca tgataaggaa gatatgggga
     1321 acaagctgga ggaataaagc attacaatat ttgttcttga tttttttcgc cactggaata
     1381 tcaattaaca ataccattgc cgtatttgac gccctgattg ggaaaaaaaa tgaattcttg
     1441 agaacaccaa aatttggtat cgtacaaaaa aatcaaaagt ggaataataa atcctatatc
     1501 attccattta caaaaactac actgctagaa atattttttt ctgtgtatgg gtgcatagca
     1561 ttattaatat cattcttttc aggcaatgct ctccttatgc cagtgattgg aatacaaacg
     1621 ctaggattca tctatgttgc atacattagc ttcgtgcaat ctagagggaa gtatgacaaa
     1681 aagagatccc tgcatcagtt ccaatttccg aacgaaaata atccctacac ttcaacaaag
     1741 aatgatgggg agagttatgc aaaaggagag gatgttataa atacaagaag ttactcaaaa
     1801 tcattggtcc atacttcggt gtctagacaa agggaaccct caatggatag aaagcaatca
     1861 aaattaatcg gtataggact tgtatttttt gtgttagcaa gtggcatcat cgcttatgta
     1921 ggataccaaa ataccgttta tccgatagat aaagcggttg catatcttgg aagagcagaa
     1981 acaacacaga ctcctgactt gtttgtagat tacgtcaatc ttgcgagaca aaatctgcct
     2041 agggaaggaa atcccgtgtg gccttttgcg actgccaaga cagactttag ctcaatacag
     2101 accgaacttg atgctttgat tttacgcgga agactagttt cttatct
//
LOCUS       DATLQL010000501         2221 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1902393, whole genome shotgun sequence.
ACCESSION   DATLQL010000501 DATLQL010000000
VERSION     DATLQL010000501.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2221)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2221)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2221
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1902393"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(683..>2221)
                     /gene="glmS"
                     /locus_tag="VNB68_05135"
     CDS             complement(683..>2221)
                     /gene="glmS"
                     /locus_tag="VNB68_05135"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004360 - glutamine-fructose-6-phosphate
                     transaminase (isomerizing) activity [Evidence IEA];
                     GO_process: GO:0006040 - amino sugar metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HVD36766.1"
                     /translation="HGGIIDSNAHPHSACTTNLAIVHNGVIENHQELKEELLKKGHVF
                     KSETDSEVIAHLLEHYWALKNDIKEAMMNTCNRLRGSFAFVAVFDDSTLCAARYDEPL
                     IIGITAGGYFISSDVLGFLDYTDRAIFLDNRDIVLLEGNNLSIINFDGEKVERTPTQV
                     AWELADSDKGKYAYFTLKEIYEQSHTIFKSMQQKKESVETFCDIITNARDVFVTGSGT
                     SYHSALLAKHILSKYSQIRVETVVSSEFQYSSELLDENSVLIAISQSGETADVLQSVK
                     AAREKGAKVLSIVNVTTSSLARLSDCFLEVKCGPEIGVAATKSFTGQLSIIYYIADTI
                     GGNLTGISTNRMELSNAIEKSLELESKIAEFAAQIKDAKDIYILGRSNHFPICLEGAL
                     KIKELAYIHAEGIAAGELKHGPLALIDKNSVVIILNPDDSTYIDTLSNAHVVKSRGAR
                     LIGITNKPHPIYDYCIPIPYVKESLLPMLEVIPLQILAYHLALHNNANPDYPRNLAKC
                     VTVR"
BASE COUNT          639 a          443 c          407 g          732 t
ORIGIN      
        1 tttattgtta cattgaatat acctttatcc gatattttct gaatcagagg tgaacttaat
       61 cctatatttg agagtgcctt cttttcagaa gggttgtcca cgctgagctg cgccaaggcc
      121 acgtttgttg taaataatgc atatagtatc aacagtgtaa cgaacaacat tttgtgcatt
      181 aacataaaat agtcacaatg aaatataacc gttcaataag taaagttcaa atcgccctca
      241 tgatacatct ttagataaat attttagacc acaaaagaac tcggcaaatt gtattccata
      301 atcccaaccg accgtaaatg agattttttg ctgattccat atttgacatt ctttataaca
      361 tggccttgaa tttttgtaaa tagaatcaaa cccttatgta cccttaaaaa acatgagtcc
      421 cttgtatatc atgtcgggag atttgcttcc ctttttgagg agaaatattt ttggagcaga
      481 tggcgttgga ataggcttgg tagatgttta tcgcactcaa acatccacaa tacaacgaga
      541 tatttgctag gctatcgagg ggtcactaat tctctagcaa cagagtagtt atcgtcagtc
      601 agggctgttt gaaattcgcc atcgaattga attcctagat tatcttgaca gctgctgtcc
      661 aaatcttcag gtattaaagc tcctatctta cagtaacaca tttagccaag ttgcgtggat
      721 agtctgggtt ggcgttatta tgaagtgcta gatggtacgc caaaatctgt agtggtatca
      781 cttcaagcat tggcaataat gattctttga catatggtat aggtatgcaa tagtcatata
      841 tggggtgggg cttgtttgtt atgccaatta gtctagcgcc tctggatttt actacatgcg
      901 cattagagag agtatcgata taagtcgaat catcgggatt caaaattatt acaacgctat
      961 ttttatcaat taaggctaga ggcccgtgtt tcagttcacc cgctgctata ccttcggcgt
     1021 gaatataagc aagttctttg atcttaagag caccttctag gcagatcgga aagtgattag
     1081 aacgaccgag aatgtatatg tcctttgcat ctttaatctg tgctgcaaac tctgcaatct
     1141 ttgattcaag ttctaaactc ttttctatcg cgtttgacag ttccattcta tttgttgaaa
     1201 tgcctgtcaa gttaccgcca atagtatcag ctatatagta tattattgat aactggcctg
     1261 taaagctctt cgtggcagcc actcctattt caggcccgca tttcacttct agaaaacaat
     1321 cgctgagtct tgcaagagat gatgtagtta catttactat tgaaaggact ttagcccctt
     1381 tttctctcgc tgccttcact gactgtaata catctgcagt ttcaccactt tgggaaatag
     1441 caattaatac agaattttca tctaatagct cagaagagta ttggaattcg cttgacacaa
     1501 cagtttctac acgtatctgt gagtatttag ataggatgtg ttttgctagc aatgctgaat
     1561 gataactagt cccactacca gtgacgaaaa catccctcgc atttgttatt atatcgcaaa
     1621 atgtctctac gctttctttc ttttgctgca tacttttgaa gatagtgtga ctctgttcat
     1681 aaatttcctt gagagtaaag tatgcgtatt ttcctttatc actatctgcg agttcccatg
     1741 caacctgtgt tggagttcgc tcgacttttt ctccgtcaaa attaattata gaaagattgt
     1801 ttccttctaa caatactata tccctattgt ctaagaatat agcgcgatcg gtgtaatcca
     1861 gaaagcccaa tacatcacta gaaatgaaat agccaccagc ggtaattcca attataagtg
     1921 gctcatcata tcttgctgca catagggtcg aatcgtcaaa cacggcaaca aaagcaaatg
     1981 aaccccttag tcggttacat gtattcatca tggcctcttt aatgtcattt tttaatgccc
     2041 aataatgttc taagaggtgc gctataactt cactgtctgt ctcactcttg aagacatgac
     2101 ctttctttag caactcctcc tttaattcct gatggttttc gataacgcca ttatgaacta
     2161 ttgccaaatt ggtagtacaa gcagaatgtg gatgagcatt ggaatcaata attccgccat
     2221 g
//
LOCUS       DATLQL010000502         5143 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_126074, whole genome shotgun sequence.
ACCESSION   DATLQL010000502 DATLQL010000000
VERSION     DATLQL010000502.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5143)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5143)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5143
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_126074"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(241..2310)
                     /locus_tag="VNB68_05140"
     CDS             complement(241..2310)
                     /locus_tag="VNB68_05140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="minichromosome maintenance protein MCM"
                     /protein_id="HVD36767.1"
                     /translation="MAEQQTTAALSNQLELFLRGFKDKDDNYKYFDRINHMMASNSTS
                     LIADYIDLDVANPEIAKLITYRPDETLEAFNEAVVSILREIHFDYAEEIKEKIKVRIG
                     NYTVQKGLRDINAEVIDKLIGVSGMVVRSSEVKPLAKKIGYRCLNCDAINEAQLKGLS
                     LRKPTKCINCSEKELEMDPENSIFTDFQLVRLQELPEDLPAGQLPHYVEVTVMDDLVD
                     RCRPGDRVLLTGIVRIEHEQIAPQAKTNLFRLRMEGNNIEYLGGLAGTKDTRTLERMA
                     ISGEDEKQIFAIAGKPDAYDKLIASFAPHIYGHEIIKEAILLLIVGSVTKKLDDGSTR
                     RGDINIFLVGDPGTAKSEMLKYAAKIAPRGLYTSGRGTTAAGLTAAVIRDKSGIMMLE
                     AGAVVLGDQGLVCIDEFDKIKPEDRSSLHEVMEQQTCSVAKGGIVATLNARTSILSAA
                     NPMYGKYDVFKNITENVNLPIPLLTRFDLIYVIRDTPEREKDSRIAGHILEIHRDVEH
                     AAQPAIEMDLFRKYLAYAKQIEPKLTIEVINALRDYYMKMRNVDSEGMITVTPRQLEG
                     LIRLATARARLLLQDNVKIEDAERAIYLVQRMLETAGVDVNTGKVDLGVLHGKPHSEI
                     SKLKLFMEVFNGISGQDKNDVEEKNFINELVKTGKFSEDEARTYIKKAMQNGQIYERR
                     SGFYAKA"
     gene            complement(2303..2842)
                     /locus_tag="VNB68_05145"
     CDS             complement(2303..2842)
                     /locus_tag="VNB68_05145"
                     /inference="COORDINATES: protein motif:HMM:NF017704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36768.1"
                     /translation="MVTDRLTSSIFEDIHSIYDLAYLMEEVRIMYKRDIKVSNDNIQI
                     DAKEGDISSIRRWIAKILSQHKLVEIQDSEISSYVSRALNRERIARPHDLSKIDIDFY
                     VRVDDYLSGLKERDRENLMISLNSFVAARLEKIDKLAAASPLAAETEEKLSAEESLLY
                     TLVHDSTSLFKQQVLRKNG"
     gene            3056..4048
                     /locus_tag="VNB68_05150"
     CDS             3056..4048
                     /locus_tag="VNB68_05150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication factor C small subunit"
                     /protein_id="HVD36769.1"
                     /translation="MTSESQNLSNLMWVEKYRPKKLDDIVNQKEIINSLKNLAKKPKE
                     MPHLLFAGPAGVGKTTTGLCLARELLGENWREDTLELNASDERGIKMVRERVKEFAGV
                     IKLDLGNKNDKLFRLIILDEADEMTSEAQTALRRIIEDSSKTTRFIIICNYLSQIIDP
                     IQSRCVVYRFKRITTEDLEEYLKLLCKKEGVKYEEKAIASILESTQGDMRHSINVLQG
                     AAVMGSVSTTTVQTSLGLSGKAKVADVIKLAIAGKFNEARIKLLELTMVYGMSEFDFL
                     KYANQIGYSMKLSHPEDFAALMAEYDHRLTTGAHPEIQLAALLAQLGKLGLKPN"
     gene            complement(4189..4461)
                     /locus_tag="VNB68_05155"
     CDS             complement(4189..4461)
                     /locus_tag="VNB68_05155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36770.1"
                     /translation="MASTIFRLQSHKFSSDNIQTTLVCSKCDEVFSKEFPLDLEGQTI
                     EFKCPVCGAPGETDLPYKSAEEREEFEEDFEEVEEEEGGEEFEEEY"
     gene            complement(4713..>5143)
                     /gene="folE"
                     /locus_tag="VNB68_05160"
     CDS             complement(4713..>5143)
                     /gene="folE"
                     /locus_tag="VNB68_05160"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HVD36771.1"
                     /translation="HMNSELDISFNEETDSIIARDIQFYSMCEHHMLPFFGKIHIAYI
                     PSGKVFGISKLVRLVEKYSRRLQIQERLTKEIADEIMRMDVKGVMVVAEGEHLCMKMR
                     GVRNNGIITTVANRGIVVQNEAREHLLALIYNSKSQTRGI"
BASE COUNT         1502 a         1034 c          934 g         1673 t
ORIGIN      
        1 gaaggtaatg acgagattta tgaaatacta aattcaacga acttacatgt agtaacatgt
       61 atatctacaa tgcaatagaa cgttatcgaa gaatacaata gacaaatagt tagattctct
      121 tctaaagacg tacaattgaa aattacataa gaatgtatta tgagatattt gaaaaagctt
      181 tcaaatatta ggcaaaggtg aagtaaaaaa tgtgagtatt gtcagcagat ctcttctctt
      241 ctatgcctta gcatagaatc cggatcttct ttcatatatt tggccgttct gcatagcttt
      301 cttaatgtat gtccttgcct catcttcaga aaacttacca gttttgacga gttcgttaat
      361 gaagttcttc tcttcaacgt cattcttgtc ttgaccggaa atgccgttga atacttccat
      421 gaacagcttg agctttgaga tttcactatg aggctttcca tgtaatacgc caaggtcgac
      481 ttttcctgta tttacgtcta ctccggctgt ttccaacatt cgttgaacta gatatatggc
      541 ccgttcggca tcctcaattt taacgttatc ttgaagtaat aatcttgccc ttgcagttgc
      601 tagccttatc agtccttcca actgacgagg ggtaacagtt atcattcctt cagagtcgac
      661 gtttctcatc ttcatatagt agtctcttaa tgcattgatt acttcgatgg tcaatttcgg
      721 ttcaatctgt ttcgcatatg cgagatattt tctaaataag tccatttcaa ttgctggttg
      781 tgcagcatgt tccacatctc tatgaatttc aaggatgtga ccagcaatac gactatcttt
      841 ttctctttcg ggtgtatctc taattacgta tattaggtca aaccttgtta gtagtggtat
      901 aggcaggttc acattttcag taatattctt aaacacatca tactttccat acattggatt
      961 agcagctgat aatattgagg ttctcgcatt caatgtagct actataccac ccttagcaac
     1021 agaacacgtt tgctgttcca ttacttcgtg caatgatgat ctatcttctg gttttatttt
     1081 gtcaaattcg tcaatgcata ccaaaccttg atctcccaaa actactgcac cggcttcaag
     1141 catcattata ccagacttgt cacgtattac ggctgcggta agacctgctg ctgttgttcc
     1201 ccttccagag gtataaagac ctctaggggc tatcttagcc gcgtatttta gcatctcaga
     1261 ttttgctgta cctgggtctc ctacaaggaa gatgttaata tctcctctac gggtcgagcc
     1321 gtcatccagt ttcttagtga ctgaaccaac tatcagtaat agtatggctt cctttattat
     1381 ttcatgtcca tagatatgtg gagcaaatga cgcaattaat ttatcgtagg catcaggttt
     1441 gcctgcgata gcaaagatct gtttttcatc ttcaccacta atggccattc tttcaagagt
     1501 tctggtatct ttagttccag caagaccacc taggtattct atattatttc cttccatgcg
     1561 caacctgaac aaattcgtct ttgcttgtgg agcaatttgc tcatgttcaa ttcttacaat
     1621 accggtcagc aataccctat cgccaggacg acagcgatca acaagatcat ccataacggt
     1681 aacttctaca taatgaggga gttgacctgc tggcagatcc tcgggtaatt cttgaagtct
     1741 aacaagctga aaatcagtaa atatactatt ttcaggatcc atttcaagct ctttttccga
     1801 acagtttata catttggtag gttttctcaa tgaaagtccc ttaagctgtg cctcgttgat
     1861 tgcatcgcaa ttaagacagc gatatccaat cttttttgca agtggcttga cttcggaaga
     1921 tcttaccacc atgccagaga ctccaatcag cttatctatc acttcggcat taatgtctct
     1981 aagacccttc tgaaccgtat aatttccaat cctaaccttt atcttctcct taatttcttc
     2041 tgcataatca aaatgaattt ctctaagaat agaaactact gcttcattga atgcttccag
     2101 cgtctcatcg ggtctgtaag ttattagctt tgcaatctcg ggatttgcaa catcgagatc
     2161 gatataatct gcaataaggg aggtagaatt tgaggccatc atgtgattaa tacgatcaaa
     2221 atatttgtaa ttatcatctt tatctttgaa ccctctcaga aataattcaa gctgattaga
     2281 tagggctgcg gtagtttgtt gttcagccat ttttccttag cacttgttgt ttaaataaac
     2341 tggtagaatc atggactagg gtgtatagga ggctttcttc ggccgataat ttttcttccg
     2401 tttccgcagc gagtggagaa gcagctgcaa gtttatctat tttctctagt ctggctgcaa
     2461 caaatgaatt aagtgagatc ataagatttt ctctatccct ttctttcaaa ccgctaagat
     2521 aatcatctac ccttacgtaa aaatcaatgt ctattttaga caagtcatgt ggccttgcga
     2581 tcctttcccg attaagagca cgtgaaacat aacttgatat ctcgctgtcc tgtatttcaa
     2641 ctagcttatg ctgggacaat attttagcta tccatcgtcg tatagatgag atgtctccct
     2701 ctttagcatc tatttgtatg ttgtcatttg atacttttat atcccgtttg tacattattc
     2761 tcacttcttc cattaggtaa gcgagatcgt agatagaatg aatatcctca aatatgctcg
     2821 aggtaagtct atcggttacc atcttgaggt ataaagcttt gtaatctgtt atatcttttg
     2881 gcaggacaat tatttttaag cttcaagtat acatgaatac gccaaggtgg ccttctaaat
     2941 attttccata ataattcggt acattttcaa aactcacgca attttcttgt ttgtgagtca
     3001 gaaaaggtgc attgagaact gaatttatat tgtgattaac gatatcattt gtcttatgac
     3061 gtctgagagt cagaatttgt caaacttgat gtgggtagaa aagtatcgac ctaagaaatt
     3121 agatgatatt gtcaatcaaa aagagataat caatagcctg aagaatttgg cgaaaaaacc
     3181 taaagagatg ccacatttgt tatttgcggg tccagctgga gttggcaaaa ctaccacggg
     3241 tttatgttta gcaagagagt tgcttggtga aaattggaga gaggatacgc tagaactcaa
     3301 tgcttccgat gagagaggta taaaaatggt gagagaaaga gtaaaggaat ttgctggggt
     3361 tattaagctg gacttgggca ataaaaatga caagctattt agactgataa tactggacga
     3421 ggccgatgaa atgacctccg aggctcaaac agccttacga agaatcatag aagatagctc
     3481 taaaaccacc cgattcatta taatttgcaa ttatctttct cagataatag atccgattca
     3541 gagccggtgt gtcgtatacc gtttcaaaag aatcacaacg gaggacctag aagagtatct
     3601 aaagctgtta tgcaagaaag agggagtaaa atacgaagag aaggctatcg ctagtatttt
     3661 agaatcgaca cagggcgata tgcgtcactc gatcaatgtt cttcaggggg ccgccgtaat
     3721 ggggtctgtt tctacaacca cagtgcaaac ctcattaggt ctttctggga aagcgaaagt
     3781 tgcagacgtt attaaattag caattgcggg gaaatttaac gaagcgagaa taaaattact
     3841 tgaacttacg atggtatacg ggatgtccga atttgatttc ttaaaatacg ctaaccagat
     3901 agggtactct atgaagctga gtcatcctga agactttgct gcattaatgg cagagtatga
     3961 ccacaggtta acaactggag ctcaccctga aattcaatta gcagcacttc ttgcacaact
     4021 tgggaaacta ggtttaaaac caaattaact aattcggctg gctaaaccat aaacccacac
     4081 tatattcaag actcatttaa tctgtaaaag aggcaatttt agcacagatt ctccaactag
     4141 ccatatatcc ttgccttaag tgataaaaaa ttttctaaat gaatttgatc agtattcttc
     4201 ttcaaattct tctccgcctt cttcctcttc gacctcttca aagtcctctt caaattcttc
     4261 tctctcctct gcgcttttgt agggtagatc tgtttcacct ggagcaccac agacaggaca
     4321 cttgaattca attgtttgac cttctaggtc caatggaaat tccttggaga aaacctcgtc
     4381 acatttagaa caaactagtg tcgtttgtat attatcagaa ctaaatttat gtgactgcag
     4441 tctgaatatg gtactagcca ttcttcttac ctataggaat attccttttt tataagcctt
     4501 atcatgaatt tgctatctta gaaaatacac atgtaagcca cgtaaatagt accaaaatat
     4561 ggtaatttta atacgtctta ttataaacat taattcaagt tagtcattcg ttccatactc
     4621 ggagggacct ggagtcgcca gaatccgagc caaggtagat attcagagca atgatttgtt
     4681 acagtttaag attaacagtg gtattgattt aattatattc cacgagtttg tgatttagag
     4741 ttataaatca aggccagtag atgctcccgc gcttcattct ggacaactat ccccctgttc
     4801 gcaactgtcg ttattatgcc attattccta actccacgca ttttcataca aagatgctct
     4861 ccctcagcca caaccataac tcctttaaca tccattctca ttatttcgtc tgcaatttct
     4921 ttagtcaatc tctcctggat ctgaagtctt cgagaatatt tttctaccaa acgtacgagc
     4981 tttgaaatac caaaaacctt accagaaggg atgtacgcga tgtggatctt accaaagaat
     5041 ggtagcatgt gatgctcgca catactgtaa aattgtatat ctctagctat aatagaatct
     5101 gtttcctcat tgaagctgat gtccaattca gaattcatat gat
//
LOCUS       DATLQL010000503         1065 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2082773, whole genome shotgun sequence.
ACCESSION   DATLQL010000503 DATLQL010000000
VERSION     DATLQL010000503.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1065)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1065)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1065
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2082773"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(117..728)
                     /locus_tag="VNB68_05165"
     CDS             complement(117..728)
                     /locus_tag="VNB68_05165"
                     /inference="COORDINATES: protein motif:HMM:NF013003.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HVD36772.1"
                     /translation="MEALKQVAVIAAFSVGLIFSVITIGSAAFAQQENATSSSPPSTT
                     GQITKGDIMKGEIKGGNITKGTVQNETVTGADIKGANITGAEIVGVDVSKVQNSSSQS
                     SSPSQNASSVIGQLDGGQISSGKISGGNLTKGTVTGGQIQGDKVTGANITEAEVNMAD
                     VTGANLTGAKLKTGSEEASKEGEGPLAKVPVIGETLEKINPLK"
BASE COUNT          293 a          228 c          177 g          367 t
ORIGIN      
        1 tggaagcttt tggtgagcta tggaagtctg agattatctt cctcacaaaa aatggaaaag
       61 atggagtccg ctttacggat cttaacaaat cagagaagaa tgttatcctc ttctgattac
      121 tttaaagggt taatcttttc cagagtctct cctataacgg gtactttagc taatggtcct
      181 tctccttcct tacttgcttc ttcactacct gttttcagtt tagctcctgt caaattggct
      241 cctgttacat ctgccatatt tacctctgct tcagtaatat tagctcctgt aactttatct
      301 ccttgtatct gaccacctgt aacagtgccc ttagttagat tacctcctga tatcttacca
      361 gaagatattt ggcctccgtc tagctgtcca atcactgagc tagcattttg acttggagaa
      421 gaagattgtg aactagaatt ctggactttt gatacatcca ctccaactat ctcagcacca
      481 gttatattag ctcctttaat atctgctcca gtaactgttt cattctgtac tgttcccttt
      541 gtaatattac ctccttttat ctcccctttc attatgtcac ctttagttat ttggccagta
      601 gttgatgggg gcgatgagga tgttgcgttt tcctgttgtg caaaagccgc tgaaccaatt
      661 gttattacag aaaaaattag tccaacagaa aatgctgcta ttacagctac ctgttttaga
      721 gcttccatta tgttgataag ctaatatgct taataaagcg tttaacctag tatgtcacat
      781 ctaagccgtt tttatgatag atgcaggcag tagtaataga ggaatcaaaa acaggaaata
      841 tcgatccctg gtatgctttt atctctcatc aaagagacta cgacatactt ctatcctcta
      901 tcctactatg tatttgtaca aaatacaata tacgagtttg gaaccgaatg tcgcgataca
      961 gcctgatata acccgctgaa cgccactttt ctgtgaaaac attcctgcca gattgtcaat
     1021 attcatggca tttatgtacg aaaaatatta tttatcaatt acata
//
LOCUS       DATLQL010000504         2411 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_660868, whole genome shotgun sequence.
ACCESSION   DATLQL010000504 DATLQL010000000
VERSION     DATLQL010000504.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2411)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2411)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2411
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_660868"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..385)
                     /locus_tag="VNB68_05170"
     CDS             complement(<1..385)
                     /locus_tag="VNB68_05170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin B12-binding domain-containing protein"
                     /protein_id="HVD36773.1"
                     /translation="MSSRQTVQRRRVRVLVSKLGLDGHDRGALVICRALRDAGMEVIY
                     SGLFCTPEQVTKIAIDEDVDAVAMSLLNGAHLTIFPKVARLLKEQKGDDILLIGGGII
                     PEKDKKLLEEQGINGNFGPGTPLKEI"
     gene            533..1483
                     /gene="meaB"
                     /locus_tag="VNB68_05175"
     CDS             533..1483
                     /gene="meaB"
                     /locus_tag="VNB68_05175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA];
                     GO_process: GO:0015819 - lysine transport [Evidence IEA];
                     GO_process: GO:0015822 - ornithine transport [Evidence
                     IEA];
                     GO_process: GO:1903826 - L-arginine transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl Co-A mutase-associated GTPase
                     MeaB"
                     /protein_id="HVD36774.1"
                     /translation="MLPIVEGILKGDKRSISRAISIIDNDEPDSRGIIQEIFNKTGGG
                     RTIGFTGAGGAGKSTLIGKLAHEFQKMGHKVAVLAVDPSSPITGGAILGDRVRMISSI
                     DNGIYMRSMASRGAEGGVSDSLRNVIRILDAAGYDTILVESVGAGQLEIEISRVVNIT
                     VVLFTPNTGDGIQAIKAGLTEIGDFYLVNKSDLEGSSFMYSILLELIAEGSKKQVLKC
                     SAKTGKGIRELAMLLHQSLNQEKYVQKERIMVESELQDMILNIMKEKSMEIMLQSKQY
                     SEYIKKILKKEIDPYSAAAKFSDTLLLCEGSVGNKKWSKK"
     gene            1468..>2411
                     /locus_tag="VNB68_05180"
     CDS             1468..>2411
                     /locus_tag="VNB68_05180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016866 - intramolecular transferase
                     activity [Evidence IEA];
                     GO_function: GO:0031419 - cobalamin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase family protein"
                     /protein_id="HVD36775.1"
                     /translation="MVEEVKKTDSGIPIKKVFSGQDLKKYKSNKEKPGRYPYTRGLYP
                     SMYRERLWTMRQYSGFGSAEETNRRFKFLLDHGQTGLSLAFDLPTQTGRNSDDPYSEG
                     EVGRTGVAISSIDNMMACFENIPLNKVSASMTINSTASTLLALYIAVAESQGVSPAML
                     RGTTQNDILKEYIARNTYIYPPRPSMRIIGDMIEYCSKNVPQWYPISISGYHMREAGS
                     NASQEVAFTFANAIEYIDTCIRRGLSIDQFAPRLSFFFCCTMEFFEEIAKFRAARRIY
                     AKILKEKFHARNSKSWHLRFHVQTSGESLTAQQVDNNVV"
BASE COUNT          794 a          445 c          516 g          656 t
ORIGIN      
        1 ttatttcctt gagaggagtg ccgggaccaa agttaccgtt aatcccttgt tcttccaaga
       61 gtttcttatc cttttcaggg attattcctc caccgatgag caatatatca tcgccctttt
      121 gctctttcaa tagccgcgca acctttggaa agattgttaa atgtgcgcca tttaacaaac
      181 tcatagcaac agcatccaca tcctcatcta ttgcaatctt tgtaacctgc tctggagtac
      241 aaaataaacc ggagtatatg acttccattc ctgcatctct taaagctctg catattacaa
      301 gagcacctct atcgtgacca tcaagcccta gctttgaaac caatactctt acacgtcttc
      361 tttgtaccgt ttgacgcgag gacatataca tacgaataga ttcagaatag cttttaaaat
      421 ctttatcaat atcgatctaa aagacagtga gacttttttt actatatcgg aatcataagt
      481 gtgtaagacc actcgggaag tatttaatac gctaaatcaa caattaaaat gaatgttgcc
      541 tattgtagaa ggcatcctga aaggcgataa gagatcaata tcaagggcca tttcaataat
      601 tgataatgat gaaccagatt cgcgtggaat aatacaagaa atattcaaca agacaggtgg
      661 aggtagaaca attggtttca ctggtgcggg gggtgcgggt aaaagtactc ttattggaaa
      721 attggcgcac gaattccaaa agatgggtca caaggtcgca gttcttgctg tagacccttc
      781 tagccccatc actggcgggg ctatcctggg ggacagagtt aggatgatct cttccataga
      841 taacggaata tatatgagaa gtatggcttc gcgaggcgcg gaaggtggag tttctgattc
      901 gttgaggaat gtaattagaa tcctagatgc cgcagggtat gatacaatac tagtggaaag
      961 cgttggggca ggacagctag aaattgagat atcgagggtc gtcaatatca ctgtagttct
     1021 ttttacacca aatacaggcg atggtataca ggcaataaag gctggattaa ctgaaatcgg
     1081 cgatttctat ctagtgaata aatctgacct tgaaggatcg tctttcatgt atagcatcct
     1141 gttggaattg atcgccgaag gtagcaaaaa acaagttcta aaatgctctg ccaaaactgg
     1201 taagggaatc agggaattag caatgctttt gcaccaatca ttaaatcaag aaaaatatgt
     1261 tcaaaaagaa cgtataatgg ttgaatccga gttgcaagat atgattttaa atataatgaa
     1321 agaaaagtct atggaaataa tgttgcaaag taagcaatac agtgaataca ttaaaaagat
     1381 attaaaaaag gagattgacc cgtatagtgc ggctgcaaaa ttttcagata cgctgctatt
     1441 gtgcgaagga agcgttggaa acaagaaatg gtcgaagaag taaaaaaaac tgactctggt
     1501 atccctataa aaaaagtatt tagtggacaa gatctgaaaa aatacaaatc aaataaagag
     1561 aaaccaggaa ggtatccata caccagagga ctgtatccct ctatgtacag agaaagatta
     1621 tggacaatga gacagtacag tggatttggt agcgctgaag agaccaatcg gaggtttaag
     1681 ttcctgctcg accacggcca aacggggttg tctcttgcat ttgatcttcc tacgcagact
     1741 ggaagaaatt cagacgatcc ttattcagaa ggagaggttg gaaggacagg agtagcaatt
     1801 agttcgatag ataacatgat ggcttgtttt gaaaatatac ctctcaacaa ggtaagtgcc
     1861 tctatgacaa taaattctac tgcatcgacc cttttagcac tatacattgc agttgccgaa
     1921 tctcaaggtg tatcaccggc catgttaaga ggaacgacgc aaaacgacat attaaaagaa
     1981 tacattgcaa ggaacactta catctatccc cctcgaccat ctatgcgaat tattggggac
     2041 atgattgaat actgctctaa aaatgtaccc cagtggtatc caataagtat ttcagggtat
     2101 cacatgcgtg aagctggttc taacgccagt caggaagtag cctttacttt tgccaatgcg
     2161 atagaatata tcgatacgtg catcaggaga ggattaagta ttgatcaatt tgcacctagg
     2221 ttgtcttttt tcttctgctg taccatggaa ttttttgaag aaatagcaaa atttagagct
     2281 gcacgtagaa tttatgctaa aatattaaaa gaaaagtttc atgcaaggaa ttcaaagtca
     2341 tggcatcttc gctttcacgt gcagacaagt ggtgaatcgc tcacggccca acaggtcgac
     2401 aataatgtag t
//
LOCUS       DATLQL010000505         2501 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2259451, whole genome shotgun sequence.
ACCESSION   DATLQL010000505 DATLQL010000000
VERSION     DATLQL010000505.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2501)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2501)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2501
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2259451"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1349
                     /locus_tag="VNB68_05185"
     CDS             <1..1349
                     /locus_tag="VNB68_05185"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HVD36776.1"
                     /translation="ITERAEIFIIVFTGILTILVLASFPLWHFVSPALARAKITTEVQ
                     NLTDSSLKSQLITRGIKAPSAMAFIGPNDILVTEKNRGNVQRITNGIISSQPLLHVDT
                     TKKDERGLLGLATSRNIDIEKINVFLYYTEAQLNDSGSPTPDPLGNRVYRYELVDNKL
                     VNPKLLLDLPALPGPRHNAGKMAIGPDDNLYVSIGDVDGSFKGIGTETKAQNYEDGPA
                     PDGRAGILRTTQNGLPVGEGILGNTPVLNLYYAYGIKNSFGFDFDPITGKMWDTENGP
                     TFGDEINVVEPGFNSGWVKVQGIWKMDVDPLEEPEKGEIATNGSLDLVDFGGKGRYSS
                     PEFTWSNTVGPTALRFFSSDKLGEKYKNDIFVGDIKYGNIYHFKLNKDRTGFILNGAL
                     ADKVASGEDGTEQIEFAEGFGGITDLEIGPDGFLYVLIYDSEDGRIYRISPVTSSQ"
     gene            complement(1477..2214)
                     /locus_tag="VNB68_05190"
     CDS             complement(1477..2214)
                     /locus_tag="VNB68_05190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36777.1"
                     /translation="MATLFLIVTQEKVFAADSFTIDSQTNTQDLKGPIKLKVITSANG
                     ETTAKKTSTISEPNLGTIDIPFHFKKVNDVVTVGFHDEYFVCGYILDAKTGLTTSYVC
                     NEGDLQSPDVTNAASLSSFLTVAEGKDSKANDVKLNILVPYYDKLDGEKIKVVAMIKG
                     EFQSKIIDEDRTKANIIDPEGTNGKRISVMFTFDRNTDIGKIQPGDEFFACVSANALN
                     PPSGTACEKRHIKTFDEPNILATGHIR"
     gene            complement(2287..>2501)
                     /locus_tag="VNB68_05195"
     CDS             complement(2287..>2501)
                     /locus_tag="VNB68_05195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36778.1"
                     /translation="ISDCPVQRTATTEKSGPCTEMWTRTRLDNSFDNNMVKSQTAMDK
                     NSEPTPIHSNLASSLEQVDPLGPISK"
BASE COUNT          753 a          444 c          519 g          785 t
ORIGIN      
        1 tgataacgga aagggctgaa atattcataa tcgtatttac aggaattctt accatcttag
       61 ttcttgcttc atttcctttg tggcactttg tatccccagc gcttgctagg gcaaaaatta
      121 caactgaagt tcaaaatctc acggattcta gtctaaaatc ccaattaata acaagaggca
      181 ttaaagcgcc aagtgctatg gctttcattg gcccaaatga tatcttggtt actgagaaga
      241 ataggggaaa tgtccagagg ataacaaacg gtataatttc gagtcaacca ttgcttcatg
      301 ttgatactac aaaaaaagat gaaagaggac tgcttggact ggccacttca cgaaatatag
      361 atattgaaaa aataaatgtc ttcttatact atacggaagc tcagctaaac gattcaggaa
      421 gtccaacccc agatccattg ggtaaccgag tttatcggta tgaattagtc gataataaat
      481 tagtaaaccc aaaattactt ttggacctac ctgcgttacc aggaccaaga cataatgctg
      541 ggaagatggc aattggtccg gacgacaatc tatatgtttc gattggagat gtggatggtt
      601 cattcaaggg tatagggact gaaacaaaag ctcaaaatta tgaagatggt ccagcacctg
      661 atggaagagc aggtatactc aggacaacac aaaacggact tcctgttggt gagggtattt
      721 tgggtaatac gccagtcctt aacctatatt atgcctatgg aataaagaat agctttggat
      781 ttgattttga ccccatcaca gggaagatgt gggatactga aaatggtcca acatttggtg
      841 acgagattaa tgtcgttgag ccaggattca atagtggatg ggtgaaggtt caaggaattt
      901 ggaagatgga tgttgatcct ctagaggaac cagaaaaggg ggaaattgcg acaaatggat
      961 ccttagatct tgtagatttt ggcggcaagg gtagatacag ttctccagaa tttacatgga
     1021 gcaatactgt ggggcctaca gccttaagat tttttagttc agacaaatta ggagagaaat
     1081 acaagaatga catttttgtt ggagatataa aatatggtaa tatttatcac ttcaaactca
     1141 ataaagatag aactggtttt attctcaacg gggcactcgc ggataaagtc gcaagtggcg
     1201 aagatggaac tgagcagatt gaattcgctg aaggatttgg agggatcacg gatctggaaa
     1261 taggaccaga cggtttttta tatgtcctta tctatgacag tgaagatgga aggatatata
     1321 gaatatcacc agtcacttct tcgcaataga aacaattgaa tcaagttaga tactactgac
     1381 gttattgtta gtttgaaagt tcaggtaatc tctgctgcct tacccaatat tttggatcat
     1441 agttaataat taatgttttt ttgacagatt aatgtcttat cttatatggc cagtagccag
     1501 aatatttggt tcatcgaaag ttttaatatg tcttttttca catgctgttc ctgatggtgg
     1561 attgagcgca ttagccgata cacatgcaaa aaattcgtcc cctggttgta ttttaccaat
     1621 gtctgtattt ctgtcaaaag taaacataac acttattctt ttgccattcg taccttctgg
     1681 gtcgattatg ttagcttttg tccggtcttc atctattatc ttagattgaa attcaccttt
     1741 aatcattgcc actaccttaa ttttttcccc gtctagttta tcataatatg gtaccaaaat
     1801 attgagtttg acatcatttg ccttcgaatc ctttccctcg gcgacagtta aaaatgaact
     1861 caagctggcg gcgtttgtta catctggact ttgaagatct ccttcattac agacatagga
     1921 cgtcgtcaaa ccagttttag cgtctagtat atatccacac acaaaatact catcatgaaa
     1981 gccgacagtg actacatcat ttactttctt gaagtgaaac ggaatgtcta ttgttcccaa
     2041 attgggttca gatatagtac ttgtcttttt cgctgtagtt tcaccattgg cagaggttat
     2101 cacctttaat ttgattgggc ctttcaaatc ttgtgtgttt gtctgagaat caatggtgaa
     2161 cgaatctgca gcaaatactt tttcttgagt aacaattaaa aataaagtag ccactaggga
     2221 aatgcatgct attaaggttg acaccgaagt gatatggata ggggttttca cgaattttca
     2281 ccctctttat tttgaaatag gtcccaatgg atcgacttgt tctaagctac tagctaagtt
     2341 agagtgaatt ggcgtaggtt ctgaattctt atccatcgca gtttgagact ttaccatgtt
     2401 gttatcaaag ctgttatcca gtctggttct tgtccacatc tctgtacaag gaccactctt
     2461 ctcggtggtt gcagtccttt gtactggaca atcagaaatt t
//
LOCUS       DATLQL010000506         1243 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_839787, whole genome shotgun sequence.
ACCESSION   DATLQL010000506 DATLQL010000000
VERSION     DATLQL010000506.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1243)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1243)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1243
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_839787"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1054)
                     /locus_tag="VNB68_05200"
     CDS             complement(<1..1054)
                     /locus_tag="VNB68_05200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase family protein"
                     /protein_id="HVD36779.1"
                     /translation="MSSNEQGIEGVIKFIALKNAAEYNGKARVETVIAKAFAARQDLR
                     GSVKSLIPKIKAIVHDINLLSSVEQQALLEEIAPDEEKKVEVQSHQRSTSIQKLPPLP
                     SAVLGQVVTRFPPEPNGYPHIGHAKAAIIDEEYARMYNGKLILRFDDTNPLNEKEEYY
                     DAILEGLEWLRVRPNIVKNTSDDILKLHELGKKLVQLDGAYVCTCSQTTIHDLRSKGL
                     PCQCRADSNTSLDLLQKMFDGSFDKNAAIIRFKGEMADQNTAMRDPTLFRIIDADHPK
                     IGTRIRVWPTYDFASPIEDSLDGVSHAMRTKEYELRNELYFEILDRLGLQKPFMMEFS
                     RLELDGIPVSKRKIKPL"
     gene            complement(1063..>1243)
                     /locus_tag="VNB68_05205"
     CDS             complement(1063..>1243)
                     /locus_tag="VNB68_05205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HVD36780.1"
                     /translation="SMDLKEAVKIISEIGIDVEIRKAAKEHIRRAIRSIEFYKESDAK
                     RALEASANFIVERSL"
BASE COUNT          322 a          278 c          216 g          427 t
ORIGIN      
        1 caagtggttt tatctttcgc ttagaaactg gtatcccatc caattctaac cttgaaaatt
       61 ccatcataaa gggtttttga agacctagtc tatcgagtat ttcgaagtat aactcgtttc
      121 tcaattcata ttcctttgtt ctcatagcat gactaactcc gtctaagcta tcttcaatag
      181 gggatgcaaa atcatatgta ggccatacac ggatccttgt ccctattttg ggatgatctg
      241 catcaattat tctgaataac gttggatccc tcatggcagt attttggtcg gccatctctc
      301 ccttgaatct aattattgct gcattcttgt caaaggaacc gtcaaacatt ttttgtaaca
      361 aatctagaga ggtattggaa tcggcgcgac attggcaggg aagtcccttt gaccttagat
      421 catggattgt tgtctgacta caagtacaga catacgctcc atccagttga actagttttt
      481 tcccaagttc gtgtagtttt aaaatatcat cagaagtatt tttcacaata ttcggcctta
      541 ctcgtagcca ttctaaaccc tctaggatag catcataata ttcctctttt tcattcaaag
      601 gatttgtatc atcaaaacgt aaaatcaatt tcccattata catacgcgca tattcttcat
      661 cgataatggc tgccttagca tgccctatgt gaggataacc gtttggctca ggagggaatc
      721 gtgtaaccac ctgtcctaaa acggcagacg gcaatggcgg taacttttga atggaggtac
      781 ttctctgatg agattgaacc tcaacctttt tctcttcgtc tggggcaatc tcttcaagta
      841 aggcttgttg ttctacactg gataacaaat taatgtcgtg gactattgct tttattttag
      901 gaatcagact tttcacactg ccacgcagat cttgtctagc tgcaaacgct tttgcgataa
      961 cggtttcgac cctggcctta ccgttgtatt cagcagcatt tttcagtgcg ataaatttta
     1021 tgactccttc aataccctgc tcattactac tcacttttta gattacagac tcctttccac
     1081 aataaaattg gcagaagctt ccagtgctct tttagcatca gattctttgt aaaattctat
     1141 tgatcttatt gctcgtctga tatgttcttt cgcggctttt ctgatctcta cgtcaatccc
     1201 gatctcagag ataatcttga ctgcttcctt caagtccata ctt
//
LOCUS       DATLQL010000507         2488 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_126528, whole genome shotgun sequence.
ACCESSION   DATLQL010000507 DATLQL010000000
VERSION     DATLQL010000507.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2488)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2488)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2488
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_126528"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(45..263)
                     /locus_tag="VNB68_05210"
     CDS             complement(45..263)
                     /locus_tag="VNB68_05210"
                     /inference="COORDINATES: protein motif:HMM:NF039193.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5679 domain-containing protein"
                     /protein_id="HVD36781.1"
                     /translation="MLVQVQPSIVTIILYTASFILLTSCFGMEAYCVKCKAKRLMRDD
                     KKVTMKNGKPATQGICTVCGTKMFRIGK"
     gene            complement(849..1787)
                     /locus_tag="VNB68_05215"
     CDS             complement(849..1787)
                     /locus_tag="VNB68_05215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HVD36782.1"
                     /translation="MMPKKIAFGENAAKEFNYPKNSLIITTTTHDIYSKWLEYMGITN
                     YDIYDKVTPDPAIEAVEAIKKEYEGKNISAYIGLGGGSSMDVCKYLGKLTGIPKILIP
                     TTFGTGAEMTTYAVISFEHRKKLLQDEAFLADAAIVDPYFLPGTPFNIMRNSACDAAS
                     QASEGYDSKLANPLTKLFCREAFDILEDAIVNDKPNLLPYGAMLSGIGFGNSSTTLGH
                     ALSYVFSNEGVPHGYALSSCTTVAHKFNRSIYYERFKRICQKLKFEPLKLKQPLDQAA
                     DVIIPDRGHLDNNPIPVTKQHIIKVLSEIVNGNPWE"
     gene            complement(1898..2368)
                     /locus_tag="VNB68_05220"
     CDS             complement(1898..2368)
                     /locus_tag="VNB68_05220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0016653 - oxidoreductase activity, acting
                     on NAD(P)H, heme protein as acceptor [Evidence IEA];
                     GO_process: GO:0006784 - heme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="COX15/CtaA family protein"
                     /protein_id="HVD36783.1"
                     /translation="MMLLKILSFASVFCLFILIFIGGYVSASGVGLTCPKWPLCPAGL
                     VPMDEFIIEYFHRSVAVTTSILIIVTMAFTLKLRNITPNGMKISSLIAAAAAVGQITL
                     GAIVIAERLHAVLVTVHLGLGLVLFSMTLMTALYSYKIPSDKSKKVAKELQKQR"
BASE COUNT          747 a          491 c          453 g          797 t
ORIGIN      
        1 atcatatccc caacaatagg gtagggaaga gtgaaaacag caggttactt gcctatccta
       61 aacatcttag ttccacacac ggtacaaatt ccttgagttg cgggcttgcc attcttcata
      121 gtgacttttt tgtcgtctct catcaatctc ttcgccttac atttaacgca atatgcttcc
      181 atgccaaagc aagaagtaag caaaataaaa gatgcggtgt ataaaatgat tgtcacaatg
      241 ctcggttgta cttgtaccag cattaggatg cgtagataca agtttacatt aaatcttcca
      301 tatttttgta tatttagtag gtattattct aatctcgtta taaataataa gattctatta
      361 ttgctaatag aaaattctta tcaaaaaagt atcatagtga tgcaagtacg caagtacgag
      421 atatactgcc aagccatttt gaagaatggc taacccactc ctccagacat ccacatcgtt
      481 ctagttgtag caataagcca gtgtaaattt attgctctca ttaggtcaaa ctattttagt
      541 tattattttc tctttgcact gtcttctctt ggtcttgtac ttgtagttac atgcaagctt
      601 tagaaggaat taggacgatc cgaggctttg tgtcatggaa gcaggaaata gctcctttgc
      661 agtagacttg aaagttttcc ttgcatttac attaggtcta ggtatgtttg gagcgtactt
      721 ttttttatca gaaagtcgtc tgactaaata tgtaacagtg acttggagtc ttccctataa
      781 attaataaat taaagcctta attgaccgcg attaatctag ataaaaaata agattacaga
      841 ataaaacgtc attcccatgg attaccgttt acgatttcgc tcaaaacttt gataatatgc
      901 tgcttagtaa caggaatagg gttgttgtct aaatgtcccc gatcagggat aattacatca
      961 gctgcttgat caagtggctg ctttaatttg agcggctcaa attttaactt ctgacagatc
     1021 cttttgaacc gttcataata tatggaccta ttgaacttat gtgccacggt agtacatgat
     1081 gataaggcat atccatgtgg aactccttcg tttgaaaaga catatgacag agcatgtcct
     1141 agtgtagtag atgagttccc aaatccaata cctgaaagca ttgcaccata aggcaacaga
     1201 tttggtttat cgtttactat agcatcctcc aatatatcaa aggcctccct gcaaaaaagt
     1261 ttcgtaagtg ggttagcaag cttgctatca tagccctctg atgcctggga agcagcatcg
     1321 catgccgaat ttctcattat attaaacggg gtgccaggta ggaagtacgg atcgacaata
     1381 gctgcatcgg ctaggaatgc ttcgtcttgt aataacttct tcctatgttc aaaacttata
     1441 actgcgtatg tagtcatttc tgctcccgtt ccaaaggtcg tagggataag tattttagga
     1501 attccagtca acttacctag atatttgcaa acgtccatag aacttcctcc tccaaggcct
     1561 atatatgcag aaatattttt tccttcatac tcttttttta tagcctctac agcttcaatt
     1621 gccggatcag gggtaacctt atcgtatata tcataattgg ttattcccat atactctaac
     1681 cacttgctgt agatatcatg agtggtggta gtaataatta aggaattttt tgggtaattg
     1741 aactcctttg cggcattctc tccaaaggct attttcttcg gcatcattac cttccacata
     1801 aaaaagtggg taatggttta cagctattat gtcttactga aagtaaacaa ataacatttg
     1861 gtcatcacac ctcgaagctg attctgtact tctttagcta gcgttgtttt tgtaactctt
     1921 ttgcgacttt tttactttta tctgatggta tcttataaga gtataatgca gtcattaaag
     1981 tcatcgaaaa cagtacaaga cctagtccaa gatgtacagt aactagtaca gcatgtaagc
     2041 gctctgctat tacaattgca cccagcgtta tctggccaac tgccgctgca gcagcaatca
     2101 atgacgatat cttcattccg ttcggagtta tattccttaa cttcagagta aaagccattg
     2161 taacgataat tagtatactg gtggttacag ccaccgatct atgaaaatat tcaattataa
     2221 actcgtccat gggtacaagc cctgcaggac agagaggcca tttagggcat gtcaaaccaa
     2281 ctccagaagc gctaacatat cctcctataa agattaaaat aaaaagacaa aaaacactag
     2341 caaaagaaag aattttgaga agcatcatta tttcttttat attctactgt acctttagtg
     2401 tcccagtcat ataaggatgg atcgtacaat gataggggta ttcgcccgca gtcaacttgg
     2461 ttgtagggac tttagctgat tctccgcc
//
LOCUS       DATLQL010000508         1124 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_839870, whole genome shotgun sequence.
ACCESSION   DATLQL010000508 DATLQL010000000
VERSION     DATLQL010000508.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1124)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1124)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1124
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_839870"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            273..1025
                     /gene="pcn"
                     /locus_tag="VNB68_05225"
     CDS             273..1025
                     /gene="pcn"
                     /locus_tag="VNB68_05225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030337 - DNA polymerase processivity
                     factor activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proliferating cell nuclear antigen (pcna)"
                     /protein_id="HVD36784.1"
                     /translation="MVFNAKTKSPDEWKAVTSAISTLVDEATFEATTEGLSFRGMDPS
                     HVALIDISWPNSAFDAYESDSALKFGVRIDEFSKLIKRADKKDLVEISIGDDSMLHVR
                     ISNGYVRGYKMRLIESTASSTPLPKLTFNSKVVMSPAAFDKILSDVQVFSEYITIDSE
                     ENKVSFFGKGDSGEVDIVLESDSEGLEELNVKENSKATYSLDYLSKITKAISASGGSV
                     IAEFSTKMPLRLEFRVANVGRIHFYLAPRVQD"
BASE COUNT          321 a          193 c          245 g          365 t
ORIGIN      
        1 tagtatgctt tgcatttgta ttgttctgtg ttcttaatac tctggtctgg cgtcgcgttg
       61 agttgatgtg cgagtaggtg aagtgggctt tcagtccgta ctttgtaaat cattcagtaa
      121 tattttagag tatgattggt acacttttat ggctaccatt gccatagtat tgggcttctt
      181 ccctaaagtt tcgtactgcc tagctgaatt acttatctga cacttagagg aatgcttaat
      241 atctctctct tgctcccaaa taatcgatac atttggtttt caatgccaaa acgaagtctc
      301 cagatgaatg gaaagccgtg acttctgcta tttccacact tgtggatgag gctacgtttg
      361 aagcaactac agaaggtctc tccttcaggg gaatggatcc ttctcatgtg gctttaattg
      421 atatcagttg gcctaactcg gcttttgatg catacgagtc tgactctgca cttaagttcg
      481 gcgtcaggat cgatgaattt tcaaagttaa taaaaagagc ggataagaaa gatctagtcg
      541 aaattagtat tggggatgat agcatgttgc atgtaaggat ttcaaatggc tacgtccggg
      601 gatataaaat gaggctgata gaaagtactg caagttctac cccactaccc aagttaactt
      661 tcaattctaa agtggtaatg agccctgctg cttttgataa aattctttct gacgtgcaag
      721 tgttttcaga atatattact attgactcgg aagagaacaa ggtatcattt tttggtaaag
      781 gtgattcagg tgaggtcgat atagtactag aatcggacag cgaaggattg gaggaactta
      841 atgtaaaaga aaatagtaaa gcgacgtaca gccttgacta tctttcaaaa attacaaaag
      901 caattagtgc aagcggtggg tcagtgatcg cggaattttc tactaaaatg ccgttgagac
      961 tcgaatttag agtggcgaat gtgggccgta ttcatttcta tcttgcacca cgtgtacaag
     1021 actgaactaa gatcaaggag aattatgtta ttttatatta aattatattt tcaagccatg
     1081 cttctaggaa atcatgattt tctcattact tagtcgcaat tctt
//
LOCUS       DATLQL010000509         1179 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2259634, whole genome shotgun sequence.
ACCESSION   DATLQL010000509 DATLQL010000000
VERSION     DATLQL010000509.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1179)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1179)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1179
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2259634"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..811
                     /locus_tag="VNB68_05230"
     CDS             <1..811
                     /locus_tag="VNB68_05230"
                     /EC_number="2.5.1.141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008495 - protoheme IX farnesyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0048034 - heme O biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="heme o synthase"
                     /protein_id="HVD36785.1"
                     /translation="VFTAFAAALTASLLFDVYVSPLTWVLIIGGVAAGSAAADTLTSF
                     NDRDIDAIMDRTKGRPIPTGRISPKNALMFGLILTIISLVLAWLINIWAFALMVFGLF
                     DNIVVYSKWLKRKSQTNIILGGFSGGAPALIGYVAVTTQNLEIGLVMASLVFLWIPTH
                     IWSLALHAKKDYAKAGIPMLPVISGERKSVRIIAGTTLLMVIFSILPFFFGQFGLIYL
                     ITASIFGVVMVLLSIWLLVRPSEKMSWTVFKFSSPYLAALFIAFIIDALFH"
BASE COUNT          311 a          225 c          244 g          399 t
ORIGIN      
        1 agtcttcaca gcgtttgctg ctgcactcac tgcatcttta ttgtttgatg tgtatgtttc
       61 tccattgact tgggtgttaa ttattggtgg agtagctgca ggctctgctg ctgctgatac
      121 actcactagc tttaacgacc gtgatataga cgcaattatg gatagaacta aaggaagacc
      181 tattcctacg ggaagaatct cgcctaaaaa tgcattaatg tttgggttga tattgacaat
      241 aatctcatta gtcctcgctt ggctaataaa tatctgggcc tttgctttaa tggtctttgg
      301 actatttgac aatattgtgg tatacagtaa atggttaaaa agaaaaagtc aaacaaacat
      361 tatccttgga ggtttttcag gtggcgcacc cgctctaata gggtatgttg cggtgactac
      421 acaaaacctc gagatcggtt tggtgatggc cagtcttgtt tttctttgga tacccactca
      481 catctggagt cttgcattgc atgccaaaaa ggactatgca aaggccggta tccctatgct
      541 acccgtaatt tccggtgaaa ggaagtcggt ccgcataatt gccgggacaa ctttgttgat
      601 ggtcatattt agcattcttc catttttttt tggtcaattt ggattaatat atttgattac
      661 agctagcatc tttggtgttg taatggtctt actatcaata tggttgttgg taagaccaag
      721 cgaaaaaatg tcttggactg tcttcaaatt ctctagtcca tatttagcag cactatttat
      781 tgcttttatc atagatgctc tattccacta gtttagttat tcatgaaata atgaaagaag
      841 ttgtttcgag acatggtttt gttagcgacg cagggtatat agttcgctag ataatagcac
      901 catttagact caatcttatg ttatttgtag gatatccctc tagtcctgtt aaccttttaa
      961 tgttggctta tatcgcctat attaactagt aacaataaag cgacagtcgt ccagtttcgt
     1021 ccaggacgtc agatgtccaa tctggaaacc caggtgcaaa tcctggctgt cgcactgaat
     1081 tagtcattca attgtgtccc atctttgtat tcgatatccc aagaccattc actgttacct
     1141 cggaggtcag aattatctgg gcgtagctgc ataagaatt
//
LOCUS       DATLQL010000510         1173 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1550294, whole genome shotgun sequence.
ACCESSION   DATLQL010000510 DATLQL010000000
VERSION     DATLQL010000510.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1173)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1173)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1173
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1550294"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..235)
                     /locus_tag="VNB68_05235"
     CDS             complement(<1..235)
                     /locus_tag="VNB68_05235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36786.1"
                     /translation="MEKVSVEDVMKAVSDSKSLDIFRSIAKGGVESEVLKETKGLSKK
                     QYYFRMKQLLNAGVVQRNKGRFSLTCFGAVVNHA"
     gene            398..>1173
                     /locus_tag="VNB68_05240"
     CDS             398..>1173
                     /locus_tag="VNB68_05240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36787.1"
                     /translation="MHQQTVPVLAEDVFAILGDKQSAEILTAASAGLRSSSNGIGSQT
                     KKQYYVRLKRLVDMGFMEKHQSVYKLTSFGSIVYENHLKTMDKIIPNYWQVKSIDVLK
                     SRPDFPPEQKEKIMNEYIESTKLKDVINTTHLTSFNVVNQFDDLIVEVLKVLDNAESE
                     VYFATRYHDPHVSTKIFEKLAKGVTIHILDGNPDQISVENRLAAIIRTPPNRETAEMV
                     KKITRSSRFDLKRLPELPLSFMVVDGIQVVYDTMNFINPE"
BASE COUNT          392 a          213 c          221 g          347 t
ORIGIN      
        1 gtgcatgatt tacaacagct ccgaaacaag taagtgaaaa acgaccttta ttcctctgta
       61 caactccagc attcaacagt tgtttcatcc taaagtaata ctgtttcttg gataatcctt
      121 ttgtctcttt taacacttca ctctcgacac ctcctttggc aattgagcga aatatatcca
      181 atgacttgct gtcagaaaca gctttcatta cgtcttccac agagactttt tccatgtgtg
      241 taacttacct tcgatcttct cttgtattga atatctattt atagaaactt tagcaagcct
      301 gagtaatatg taaagataag tgtccaaaat aggcaaaaat tggctatatt cctagatagg
      361 ttattaatga ccatagataa taatatgtca ttcgttaatg caccaacaga cggttccagt
      421 actagctgag gatgtattcg ctatattggg agataaacag tctgcggaga tcctcacggc
      481 tgcatctgct ggattacggt catcgtctaa cgggataggt agtcaaacta agaagcaata
      541 ctatgtgaga ttgaaacgcc ttgtagacat gggctttatg gaaaaacacc aatctgtata
      601 caaattgaca tcgtttggtt caattgtgta tgaaaaccac ctgaaaacga tggataagat
      661 tattccgaat tactggcagg taaagagtat tgatgtttta aaaagtagac ctgattttcc
      721 tcctgaacag aaagagaaga taatgaatga gtacattgaa agtacaaagt tgaaggatgt
      781 catcaataca actcatctaa caagctttaa tgttgtaaac cagtttgatg acctcattgt
      841 agaagtcctg aaagtattgg ataatgctga gagcgaagtt tacttcgcaa ccagatacca
      901 tgatccgcat gtttcaacca aaatctttga gaaactagct aaaggtgtta ccattcacat
      961 actagatggc aacccagatc agataagtgt tgaaaataga cttgccgcga taatcagaac
     1021 gccacctaat agagaaactg cagagatggt gaagaagatt actagatctt caaggtttga
     1081 tttaaaaaga ctacctgaat tgccactcag ttttatggta gtagatggaa ttcaagtagt
     1141 gtatgatact atgaatttta tcaatccaga aca
//
LOCUS       DATLQL010000511         1336 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1369177, whole genome shotgun sequence.
ACCESSION   DATLQL010000511 DATLQL010000000
VERSION     DATLQL010000511.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1336)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1336)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1336
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1369177"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            546..1118
                     /locus_tag="VNB68_05245"
     CDS             546..1118
                     /locus_tag="VNB68_05245"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HVD36788.1"
                     /translation="MRSDVAILEADMTTDDAIEAMQEKNARNVLVSVRGEIVGIISKT
                     DILFKVTSQGRNPSKVKLREIMNSPVLAVNPQATVKEALSIMEKKKVRQLMVHAYAAV
                     LGMINREDVLERIEQISLSLEDTALSGTPACIIDTKTISYMKDTSKVKFPCPYCGSPF
                     DDKEALSRHIDRLHEETGILEGDYRKIIGQ"
BASE COUNT          455 a          229 c          301 g          351 t
ORIGIN      
        1 tgttttcagt taggttttag ggtttccttt gaaaggcttg agagagatat aataacccct
       61 gaattttaac gtatatataa gcaggccctc agaagagggg atttcggaaa aacattcaaa
      121 atatgaaccc agataccgtg gaaatttaat gctgtattct tgcatcctca atctaaaaaa
      181 gactgcatgc tggagtgagt cgattgtgaa ctaccatcat ccacaaaaaa taagatcttg
      241 ccgtctcaat aggaagattg cctgtattac tacaagctag gcatataatt tgggatacgg
      301 aaatttacta atcgtgggta aaaagtgcaa aattagtaag aatctttcat gtttatgaaa
      361 agggtatatt cttttatagt cgtttaagga atactaatag agatgtttaa tagcgatgtg
      421 tatgtaagca gaagaatgga tattcaacag aaaggaggct cgaaagcata attagcaatc
      481 ttggtgtcaa tgaccccggc ctctcaaatg tagggactct actgggatct ccagttggtg
      541 aaattatgag atcagatgtt gctatcctgg aagcagacat gacaacggat gatgccatag
      601 aggcaatgca ggaaaaaaat gcacgtaacg tccttgtttc tgtcagaggt gagattgtag
      661 gcattatcag caagacggac attcttttca aggtgacatc gcagggaaga aatccctcga
      721 aagtaaaact acgagaaatc atgaatagcc ctgtattggc cgtcaaccct caggcaaccg
      781 tcaaagaagc cctttcgata atggagaaaa agaaggtgag acagcttatg gttcatgcgt
      841 acgcggccgt cttaggaatg attaatagag aggacgtatt agagcgtatc gaacaaattt
      901 cactatcatt agaagataca gcattatctg gtacaccagc ctgcatcatt gatacaaaga
      961 ccatatctta catgaaggat acgagcaaag tgaaatttcc atgcccatat tgcgggtcac
     1021 cgtttgacga taaggaagcg ttatcaagac atattgacag acttcatgaa gaaaccggga
     1081 tactagaagg ggattatcga aagattatag gtcaatgagc cgtaccataa ctacttgtaa
     1141 aaaatggatg gaatagagct tgtgcgtacc cggttagtag tatactacta tatgcccaat
     1201 tcatgtagat tattccattc agttgaagta ctctgactga ataacagagc tgaaaccgat
     1261 aatagagtgt ggttaggtgt agaggcactg tgttacacac caaagaagaa tgactcagac
     1321 agatttagga aaacaa
//
LOCUS       DATLQL010000512         1046 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_126781, whole genome shotgun sequence.
ACCESSION   DATLQL010000512 DATLQL010000000
VERSION     DATLQL010000512.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1046)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1046)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1046
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_126781"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..684)
                     /locus_tag="VNB68_05250"
     CDS             complement(<1..684)
                     /locus_tag="VNB68_05250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HVD36789.1"
                     /translation="MDIREVFILSFDALKERKVRSILTILMVMAGSSLLVAVNGFGAG
                     FEEFFNNQFNNLAPNILFVSSVQQAQNGSPVGGAGTPAAPKITLNAAVIERLSSLPFI
                     DEVIPSYQADITLESQGESKSNAVLSIDPQKIFVIAPTLELIDGSTLRQNDPSAMVVA
                     ENVAVPPGETTPFITLGQSVRAKYSFVDDVTGKSKEELKNFVVTGVMKSTGNPTIDNS
                     VIINTDAGNA"
     gene            complement(710..>1046)
                     /locus_tag="VNB68_05255"
     CDS             complement(710..>1046)
                     /locus_tag="VNB68_05255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36790.1"
                     /translation="SYRDNLRILHEITMNESVDFKPLQQTIREGQSIFGIGSIGGHDT
                     SNSSIIAILIMLAIGIIIATIAVLRIRRSESKLKIIGSHRDRLKKEEGEEDIHSLLDG
                     PNDKERRND"
BASE COUNT          285 a          215 c          170 g          376 t
ORIGIN      
        1 tgcatttcct gcatccgtat taataatgac agagttgtct atggtaggat ttcctgtaga
       61 tttcataact cctgttacaa caaaattctt taattcttct ttagacttgc ctgttacgtc
      121 atctacaaaa gaatactttg ctctgacgct ctgacccaaa gttataaagg gtgttgtttc
      181 tcctggtgga acggctacgt tctcagctac aaccatggca gaaggatcat tttgtcttaa
      241 tgtggaacca tctataagtt ccaatgttgg ggcaattaca aatatttttt gaggatctat
      301 ggataaaacc gcattgcttt tagactcacc ctgagactct aatgtaatat ctgcttgata
      361 ggaaggaatt acctcatcta taaacggaag tgaacttaat ctctctatga ctgcagcgtt
      421 caatgtaatt tttggtgctg caggtgttcc tgctcctcct acaggtgaac cgttctgcgc
      481 ttgctgtaca ctgcttacga atagtatgtt cggtgcgaga ttattaaatt gattgttaaa
      541 aaactcttcg aatcctgccc caaatccgtt aactgcaact aatagactgc tccctgccat
      601 caccatcaaa atagtaagta tggatctgac ttttctttcc ttaagggcat caaatgataa
      661 tatgaaaact tctcttatat ccattattat ctatcctttc tttcttttat caatcattcc
      721 ttctttcttt atcgtttggt ccgtccaaaa gagaatgaat gtcttcttct ccttcctctt
      781 tttttaagcg atctctgtgc gaccctataa tcttaagttt tgattctgat ctccgtattc
      841 tgagaacagc tatagtcgct attataatac ctattgctag cattatcaat atagcaataa
      901 ttgaagaatt gcttgtatca tgaccaccaa tactaccgat tccaaagatg ctttgtcctt
      961 cacgaatagt ttgttgtaaa ggtttaaagt ctactgattc attcattgtt atttcatgaa
     1021 gaatccttag attgtctcta tatgaa
//
LOCUS       DATLQL010000513         1110 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_126921, whole genome shotgun sequence.
ACCESSION   DATLQL010000513 DATLQL010000000
VERSION     DATLQL010000513.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1110)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1110)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1110
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_126921"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(73..498)
                     /locus_tag="VNB68_05260"
     CDS             complement(73..498)
                     /locus_tag="VNB68_05260"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HVD36791.1"
                     /translation="MAQEQSIGAIIKYQSSLENFASPEFLLLKNRRGFWGFPQGHKER
                     GESDIETLRREVSEETGIVYLDIQSYVGKIRYSYFKADGMKSEKEVTFYFATTSTREI
                     KISEEHEGYRWHAFHDALSILDHRQLKSILLKGHRRGLY"
     gene            594..667
                     /locus_tag="VNB68_05265"
     tRNA            594..667
                     /locus_tag="VNB68_05265"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:628..630,aa:Ala,seq:ggc)
     gene            complement(697..>1110)
                     /locus_tag="VNB68_05270"
     CDS             complement(697..>1110)
                     /locus_tag="VNB68_05270"
                     /inference="COORDINATES: protein motif:HMM:NF014054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate pyruvate-lyase family protein"
                     /protein_id="HVD36792.1"
                     /translation="SASKLSLSKKVFLAELNTVEQLMSILSRSETEIKILKQTEEDSL
                     IERHVIIISKRTNDKLVYAKSYIFPENLPPGIVDKIKRKDQGIGNIIASSELETFRRL
                     LKIGYEPKTRAVFRIYEILCKKKVAMEIKETFMLK"
BASE COUNT          292 a          221 c          215 g          382 t
ORIGIN      
        1 ttcatagttc gaatagggaa tagtataaat ctattgcgat atggttgaag caagtaaagc
       61 agcctgctca gctcagtaga gaccccgtct gtgaccctta agcagaatag atttcagctg
      121 tctatggtct agtattgata gagcgtcatg gaatgcatgc catctgtacc cctcatgttc
      181 ttctgagatt ttgatctctc gagttgacgt tgttgcaaag taaaaggtaa cttccttttc
      241 tgatttcatt ccatctgcct taaaataaga gtaacgaatt ttcccaacat acgactgaat
      301 atcgagatat acgatccctg tctcctcgga tacttccctt cgtagggtct cgatatccga
      361 ttctcctctt tccttatgtc cttgtggaaa accccagaag cctcttctat tttttagtaa
      421 tagaaactca ggagacgcga aattttctaa agatgattga tattttatta ttgcgcctat
      481 agattgctcc tgagccactc taccgatact tgacagagag taggataatt ataatattgt
      541 gtatttgtgt taaacctatt aatatcgaga gccaagtctt ttgagatacg ccagggccgg
      601 tcgtctagcc tggtaggata cggcattggc attgctgagg tcgtgggttc gaatcccacc
      661 cggtccatct atttcaaagt ttgacaatca tgattattat tttagcatga aggtttcttt
      721 gatttccatt gcgacttttt ttttgcatag gatttcgtat attctgaaga cagctctagt
      781 ttttggttca tagccaattt taagaagtct tctgaaggtt tcaagctccg aagaagctat
      841 gatgttgcct atcccctggt ccttcctttt gatcttgtca acaattcctg gaggcaggtt
      901 ttcaggaaaa atataagatt ttgcataaac caatttgtca ttcgttcttt tgctgataat
      961 aatcacgtga cgctcaataa gactatcttc ttcagtttgt tttagaattt ttatctcagt
     1021 ttctgaccta gacagaatac tcattagttg ttcgacggta ttaagctcgg ccaaaaatac
     1081 cttcttggac agagataatt tgctagctga
//
LOCUS       DATLQL010000514         1100 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_485706, whole genome shotgun sequence.
ACCESSION   DATLQL010000514 DATLQL010000000
VERSION     DATLQL010000514.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1100)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1100)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1100
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_485706"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(340..903)
                     /locus_tag="VNB68_05275"
     CDS             complement(340..903)
                     /locus_tag="VNB68_05275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methane monooxygenase/ammonia monooxygenase
                     subunit C"
                     /protein_id="HVD36793.1"
                     /translation="MAQMPALIPKEVEIQRLKKIYIMVIMLGSIAASVEVDNFVDGSL
                     HQTAIRDSAFTPAHWWLYSHFVALPLGWGFVAMYDRRVPILRGPANSMNTGLKITIIG
                     YLATMFTIGVNEMWHFWFVEEIFSVPNHWMFNMGVVVAFMGALAYVVRVYARLVELGA
                     ETPAKNPYVAEMYKLALEGKLYSRSIP"
BASE COUNT          343 a          219 c          197 g          341 t
ORIGIN      
        1 ataattcggt agttgattga ctgatcacct ctataagatc accatctgag acattcatct
       61 gacacatgac atctggatct aatcgcgcta tttttcgagc attatcttgg atctcatttt
      121 ccgctacgat caaaggtctc gtatcaacaa tcttatccat aataaataac aaatgaatga
      181 gataatataa gaatattatt gattggcgtc gagttacaaa tagcgaatac gtcagcaact
      241 aagtaattat ccgctaaacg taatacacta acacatgctg aaaatataaa aaaaggagaa
      301 gttgactgtt ttttgggttt ctttatgttt gtctttgttt tatggtatgg acctactgta
      361 cagctttcct tcgagtgcta gcttgtacat ctcggctacg tatgggttct ttgctggagt
      421 ttcagcacct aattcaacta gacgtgcata tactcttacc acataagcaa gagcgcccat
      481 gaaagctact acaactccca tgttaaacat ccagtggttt ggcaccgaaa agatctcctc
      541 gacaaaccag aagtgccaca tttcatttac accaattgta aacatggttg caagatagcc
      601 tatgatggtt atctttagac cagtgttcat cgagttggca ggacctctca gtataggtac
      661 ccttcggtca tacattgcca caaatcccca tccaagtgga agggctacga agtgactgta
      721 caaccaccag tgagctggtg taaatgcact atccctaatt gcagtctgat gtagtgatcc
      781 atcgacaaag ttatctacct ctacggatgc tgcgattgac cccagcatta taaccatgat
      841 atagatcttc tttagtctct ggatctctac ttcttttggt atcagagccg gcatttgtgc
      901 catattagtc gaggtatgtt tcgtggatgt actataataa cacattgtaa gtaatatagc
      961 aatattattt gtagtaatat cacaaaaata tgcaatacaa ctgcagtttg ctaatattat
     1021 gaattgttta atatagaaaa tacatacaat gcaagattag cagtaatgat aagcaattat
     1081 gatatacata acgctgtata
//
LOCUS       DATLQL010000515         1483 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_840326, whole genome shotgun sequence.
ACCESSION   DATLQL010000515 DATLQL010000000
VERSION     DATLQL010000515.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1483)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1483)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1483
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_840326"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1483)
                     /locus_tag="VNB68_05280"
     CDS             complement(<1..>1483)
                     /locus_tag="VNB68_05280"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HVD36794.1"
                     /translation="LVVTLVAIEEGDNEKLAMLAVNVIKKYMNTVKSRNLIIYPYSHL
                     SSNLASPIVAFELLKSIERIAKESIEHVHRAPFGWTKALTINVKGHPLAENFKVITEL
                     DSSSDLHPIDSDSTGVPSDTRADHEEKISSAIGAEERLQSQWYVLQPDGEMIPSDKYQ
                     FRREEENLRLLANYEIAKRRSSDEAPPHVRLMKKMAIADYEPASDVGNIRFYPKGRLM
                     KSLIEQYITRQVMEYGGMEVETPLMYDSKHPAMESYFNRFPARQYNIITDNNKQFFLR
                     FAACFGQFLMAKDFQISYKHLPLRLYELTRYSFRREKSGELVGLRRLRAFSMPDCHAL
                     CKNMDQAKEEFLKRFRLSVRVIEALGLSTTDDVEMAIRFTEDFYKENVAFVNELVKMF
                     GRPVLVELWKDRFFYFTLKWEFNYIDNLGKASALSTDQIDVENGQRYQIEFIDEDGSK
                     KNPIILHNSPSGAVERVIYALLEKCAKISKLGFKPSLPLWINHT"
BASE COUNT          421 a          319 c          274 g          469 t
ORIGIN      
        1 gagtatgatt tatccataga ggcagagaag gtttgaagcc caatttagaa atcttcgcac
       61 atttctcaag tagtgcgtat atgacacgtt ctacagcacc actaggagaa ttatgtaaaa
      121 taataggatt cttcttactt ccgtcttcat caataaattc gatctgataa cgctgaccat
      181 tctcaacgtc tatttgatcc gtcgacagcg cagaagcctt cccaaggttg tcgatataat
      241 taaactccca cttgagagta aagtaaaaga atctatcctt ccacagttca actaaaacag
      301 gcctaccaaa cattttcact agttcgttca caaaggcaac attttcttta taaaaatctt
      361 cagtgaaacg gatggccatt tcaacgtcat cagttgtgga caatccaagt gcctctatta
      421 ctcttacaga taatcgaaat cgcttgagga attcctcttt tgcctgatcc atatttttac
      481 ataatgcatg acaatctggc atactaaatg cccttaggcg tctaaggccc accagttctc
      541 cgcttttttc ccggcggaag ctgtagcgag taagttcgta tagccttaac ggcaaatgct
      601 tgtatgatat ctggaagtct tttgccatta agaattggcc aaaacacgcg gcaaatctca
      661 aaaaaaattg tttattattg tctgttataa tattatactg acgtgcagga aaccgattaa
      721 aataactctc catagcagga tgtttggaat cgtacattag aggtgtttca acctccattc
      781 ccccgtattc cattacctgt ctcgtaatgt attgttcaat tagcgatttc attaatctgc
      841 ctttagggta gaagcgaata tttcctacat ctgatgcagg ttcataatct gcaattgcca
      901 tcttcttcat tagcctgaca tggggagggg cctcatctga cgagcggcgt tttgctattt
      961 catagtttgc tagtaaacgc aaattctctt cttctcttcg gaattgatat ttatcagagg
     1021 gaatcatttc accgtcgggt tgtaaaacat accactgaga ctgtaatctt tcctctgctc
     1081 ctatagcaga ggatattttt tcttcatgat ccgcacgagt atccgagggg accccagtcg
     1141 aatcactatc gatagggtga agatcggaac tagaatctaa ctctgttatc accttaaaat
     1201 tttccgctaa tggatgtcct ttgacattga ttgtaagggc ctttgtccat ccaaacggtg
     1261 ctctatggac gtgttcgatc gactcttttg caattctctc aattgatttt aagagttcaa
     1321 atgcaactat cggagaagca agattggaac ttaggtgtga ataaggataa atgattaaat
     1381 tccgactctt tactgtattc atatattttt taatgacgtt aaccgcaagc attgccagct
     1441 tttcattgtc gccctcttcg attgcaacga gcgtaacaac gag
//
LOCUS       DATLQL010000516         1067 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_661728, whole genome shotgun sequence.
ACCESSION   DATLQL010000516 DATLQL010000000
VERSION     DATLQL010000516.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1067)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1067)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1067
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_661728"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(164..>1067)
                     /locus_tag="VNB68_05285"
     CDS             complement(164..>1067)
                     /locus_tag="VNB68_05285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36795.1"
                     /translation="TIVLVASAGILNSYMNKSWAYAPLTLDDILKNYYIKIQDKSEND
                     LEISSEVGQDSEGDNQTGSDLTGHALSGEEDSEDDNQTSTEATGSQALSGEEDSEDNN
                     QTSTQTTGDSESNQNINQTIETQQQIQNNQTVNIQNNIQMKQKLEIAISEEEGEAPIP
                     LEQQNRIESSDRVIVTQHKGLAGPDCKTGNVLAGASNEEDLRVLSECQDATGIVMHTK
                     KMDDGDFKFFLKLDDKFKFLANEKNNDKTDGFLVVEIVPPDQGKNGVILPKEGDRVHV
                     WGSWVTDKPKGWHEIHPTWKVVNE"
BASE COUNT          277 a          227 c          180 g          383 t
ORIGIN      
        1 atatttccag taggctgcgc atatgtgaag ttagtagtta ttagatgcaa aaggatacag
       61 gaaataatag tcacgataac cataataggt gttctatcaa tcttagattc gccatctaaa
      121 gtgcgaattt tttgctggac attctgtgaa gtatgtcttg atactattcg ttaacaactt
      181 tccaggtagg gtgtatttca tgccatcctt ttggcttgtc tgtaacccat gatccccata
      241 catgcactcg gtcaccttcc tttggaagaa ttactccgtt tttgccttga tcaggtggaa
      301 ctatttctac caccaagaat ccatctgttt tatcattatt cttttcattt gctaggaact
      361 tgaacttatc atctaatttc aagaaaaact tgaaatcgcc atcatccatc tttttagtat
      421 gcataacaat ccctgtagca tcttgacatt cactcaggac cctcaagtct tcctcatttg
      481 aagcaccagc tagaacgttt cctgtcttac agtcaggacc ggcaagtcct ttatgctgtg
      541 ttacaataac gcgatctgaa gattcaattc tattctgctg ttctaacgga ataggtgcct
      601 caccttcctc ttcggatata gcgatttcta atttctgttt catttgaatg ttattttgga
      661 tattaaccgt ctgattattc tgaatttgtt gttgagtttc tattgtttgg ttaatatttt
      721 gattcgattc actatcacct gttgtctgag ttgaggtttg attgttgtct tcagaatcct
      781 cttcaccact caaggcttga ctaccggttg cctcagttga tgtttgatta tcgtcttcag
      841 aatcctcttc accactcaag gcatgaccgg tcaaatcact gcctgtctga ttatcacctt
      901 cagaatcttg accaacttca gaagaaatct ctagatcatt ctcagattta tcttggattt
      961 taatataata gttctttaat atatcgtcca aagtcagagg tgcgtaagcc catgatttat
     1021 tcatgtaact gtttaagatt cctgccgatg ccaccaacac aatagta
//
LOCUS       DATLQL010000517         7076 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_127570, whole genome shotgun sequence.
ACCESSION   DATLQL010000517 DATLQL010000000
VERSION     DATLQL010000517.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 7076)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7076)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7076
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127570"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..594
                     /locus_tag="VNB68_05290"
     CDS             <1..594
                     /locus_tag="VNB68_05290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36796.1"
                     /translation="IIGSLLSHLIFWDRLAAIFVIYFLSVGVSAHAADNLGSRKTKPW
                     GNYFTRSELIVMIITGISIAYIIWIYYMVQSVPLLWPIAIAEGFFLVAYNFELFSGFF
                     HNNMWFAISWGSLPLLAGYVIQTNSISEVSVIAASIAFVISYLEIRISRVYKELRRGS
                     EETNHESARLESQLKVISLGTVIFALFCICLKYFELF"
     gene            591..1112
                     /locus_tag="VNB68_05295"
     CDS             591..1112
                     /locus_tag="VNB68_05295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36797.1"
                     /translation="MNLASKSMKHLITIDLNGSTYVTPDSMRTLETKCGHVFSFQEKI
                     FLANLGTTQQLLEILVNSQTYVRVTKQFEKADFIKRKVEILAKKKDDVLVLATAKIYK
                     NELPQKVVEEVRSRNNGIGVILSRHHLWIHRKIKRIGYDIDRSGLFRSYELLYNKHVA
                     ADITEILLKQGIS"
     gene            complement(1126..1199)
                     /locus_tag="VNB68_05300"
     tRNA            complement(1126..1199)
                     /locus_tag="VNB68_05300"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1163..1165),aa:Ala,seq:ggc)
     gene            1965..3539
                     /locus_tag="VNB68_05305"
     CDS             1965..3539
                     /locus_tag="VNB68_05305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HVD36798.1"
                     /translation="MIAGKRIVLTADRSLMTNYRGNFLYGFIACGPYELVPEFVFDKL
                     FCPSVETDKNSGEVKVAQCGLRRIESALLEDYSRNEIMIAHPEMLDRCIGPDTKVLGV
                     NVMDPLGMAPVTTTMSPEKLSYVAMKFKKMCASIIQLKKKYGFKVVVGGNGSWELAKP
                     DRMKIHGIDTVVIGEADELALDLFHDLENGDAPEVLHTFVRNIENIPVIKGPTVNSLV
                     EAMRGCGRGCDFCDVNKRSKKDIPLERLQAEAKINLNYGFDSIWLQSDEMLLYGCDNK
                     DFVPNADAIIDLWKGLKLVGANFVGTTHMTLSAVASSPDLIKKLSGINDMESNGRWLA
                     TNLGVETVAPRLVKKHLGVKTKPYQPDEWGSVVREGCKILNQNHWFPALTLIIGWPDE
                     TPDETQYTIDLIEDFKEMRMRGLVAPLLYQDFSEKNSMHFANLNEAQFTLFWKCWQHN
                     LRVINDIIPIIIRNKTYGPPMKLFMAILIKAGTWAIMRYLRGLAKQLFNGQVPEDVVE
                     RYSRNRSVTASVPQHL"
     gene            complement(3572..3934)
                     /locus_tag="VNB68_05310"
     CDS             complement(3572..3934)
                     /locus_tag="VNB68_05310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36799.1"
                     /translation="MKFEFEEFSTVEEVFLYLISVAPYMKQVLPVSSYRGYIFSIVPL
                     TPLSGDVLMMIYSKGKMDPGMIEFDISTKKYKNVLSVERADKNYFVILTPKSATVADK
                     AIELIESLSKQKPNESIH"
     gene            complement(3991..4833)
                     /locus_tag="VNB68_05315"
     CDS             complement(3991..4833)
                     /locus_tag="VNB68_05315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HVD36800.1"
                     /translation="MAVDNKGMVSYVRVLKEDLAIFKIKPSEGSVPDFKAGQFVTIGL
                     DVPSEGKIVRRAYSIASPPEQKNWFELVIRWVRKPVPGRLTTELFNKREGDEVLWLKP
                     TGPFTINEKMPDGSPDNRRMVLIGGGTGLAPFIAYSLHLKAIGSKREIVVLHGASYVD
                     ELSYRELLTDLENESLDQGKDKWNFRYRASISRPQEWFNRSWNGQKGRVESFLRPKLG
                     TDRSPLEELVGDRITTENTMFYVCGWQGTVDGALDYLVPKGFVTERNKRKDGTYDVKF
                     ESYG"
     gene            4954..5223
                     /locus_tag="VNB68_05320"
     CDS             4954..5223
                     /locus_tag="VNB68_05320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36801.1"
                     /translation="MRSRHLHEIEDLERIISENSTEQKTLSEHFKISMNKFAGDRSVE
                     TCLDALNVSIQLASIRRKLMEAYEQYARLLEGEIIRLRRLCEDKV"
     gene            complement(5265..6134)
                     /locus_tag="VNB68_05325"
     CDS             complement(5265..6134)
                     /locus_tag="VNB68_05325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HVD36802.1"
                     /translation="MKIARVWSDKLGDTYGIISEDGNRLVSKSDFQEQTGIPIPHSIK
                     EFLFKGWIDEVTKNLPIIRFSHQVEEVHLLTPIPDPSKIICLAFNYYDHARDAGLAPS
                     DEPVIFIKPRTALNDPFNDIICPSFVKRLDYEAEIAVIIGKDVKKVEPENALECVFGY
                     MIMHDVSARDIQFKDKQFTRGKSIDTFAPCGPWITTKDEVEDPQNLGIVTKVNGEIRQ
                     NSSSSKMVISIKNIISSLSRIMTLEAGDIISTGTPAGVAMSMKEPKYLKDGDIVEISI
                     ENLGMIRNRIVFE"
     gene            complement(6145..>7076)
                     /locus_tag="VNB68_05330"
     CDS             complement(6145..>7076)
                     /locus_tag="VNB68_05330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glutamate--tRNA ligase family protein"
                     /protein_id="HVD36803.1"
                     /translation="HPLLGSKVRVWPTYDLAAPIEDSMDGVTHALRTKEYELRNELYY
                     SILSKLKMRSPILIEFSRLEFDGMPVSKRKIKPLLEDGIISSWDDPRLPTLIALHHRG
                     FVPEAIRKFILGLGITLAETKPPFETLESINRKMIDPISLKLFFVSSPVELRVEGGKF
                     GKIELRNHPTQDLGIREVEIANKFYITSPDAEDLQIGQKVRLMELYNIKILEVRYENN
                     KKVLIGSYEGDRVIQNMKKIQWVAENDAVEFSVKVPKELFIGDKYNPNRLELKTGYAE
                     SLVSKLKAGTLVQFIRFGFCSLLNGKSATYTHR"
BASE COUNT         2160 a         1388 c         1393 g         2135 t
ORIGIN      
        1 atcatagggt cacttttatc tcatctaata ttttgggacc gacttgcagc tatttttgtt
       61 atttattttc tatccgttgg ggtatctgct cacgcggcgg acaatctagg atccaggaaa
      121 actaaaccat ggggaaatta ctttacgaga tcagagctta ttgttatgat aataactggt
      181 atttctatag catatattat ctggatatac tatatggtcc agtcagttcc gctgctttgg
      241 cctatagcaa tcgccgaagg attttttctg gtcgcatata attttgaact ctttagcgga
      301 ttctttcata ataatatgtg gtttgcaata tcatggggaa gtcttccact cttggcagga
      361 tacgttatcc aaacgaattc tatatcagag gtatcagtta tcgcagcctc aattgcattc
      421 gttatatctt atctagaaat ccgaatatct agagtctata aagaattaag gagaggaagt
      481 gaagaaacca atcatgaatc agcaaggctt gaatctcagc taaaagttat tagcttgggt
      541 acggttatat tcgctctatt ctgtatatgc ctgaagtact ttgagttgtt ttgaatctcg
      601 catcaaaaag catgaagcat ctaataacaa ttgacctgaa tggatccacc tatgtaacac
      661 cagacagcat gcgtacgttg gaaacgaaat gtggtcatgt gttttcattt caagaaaaaa
      721 ttttcttggc aaatctgggc acaacacagc aattacttga aattttagtg aattcgcaaa
      781 catatgtcag agttacgaaa caattcgaaa aggcagattt cataaaaaga aaggtggaaa
      841 tactcgcaaa gaaaaaagac gatgtattag tattagcaac tgctaagatc tacaaaaatg
      901 agttgcctca gaaagtagta gaagaagtaa gatctcgtaa taatggaatt ggggtaatac
      961 ttagtagaca tcatttgtgg atccatagaa agatcaaaag aatagggtat gacatagata
     1021 gatctggact ctttaggagt tatgaactgc tttataataa acatgtagca gctgacatca
     1081 ccgaaatcct tctcaagcaa ggaatatctt gatggataaa attagtggac cgggtgggat
     1141 tcgaacccac gacctcagca atgccaatgc cgtatcctac cggactagac gaccggccct
     1201 cttgtttcgt ttttagtcag gatattaaag tctttaaggt tgtaattaga attttagagt
     1261 tactaaatta acctacaagt aaaagcacac tgattactga tgtccatcta cttatagatg
     1321 atgactttgc cgtgctggac attttaacac tttttttgtg ccttcctgta tttccgatcg
     1381 agcctcgatt ccacaataac aataaattat aattatcgga atcattcgat ttacttgtcg
     1441 agcagaactg gagcaatcaa ttggtgcagt tataaaatac attcctatcc ttacagaata
     1501 ccaagtccct ctattcctag tactaaaaaa taggcgagga tattggggct ttcctcaagg
     1561 tcacaaagaa agaggagaaa cagagattca gacacttact agagaagtga gggaggaaac
     1621 cggtatacga ggtattgatg tcctatctta tataggaaca attcggtatt catattttag
     1681 ggccgacggg atgaagagtg aaaaggaagt aaaattctac tttgcaacga cttcaactaa
     1741 aaatatagtg atctcatacg aacatgaagc gtataagtgg gtcacctttg ccgatgctct
     1801 aaatatgttg gatcataggc aattgaggtc aatatttatc aaaggccaca agaaaggatt
     1861 ttattgaaat attcacattt caaagtcatt cacataagat ttgtacccta tagtaataga
     1921 tttataccca attggcaaac gaactaaaga ggatttagat aaaaatgatt gctgggaagc
     1981 gaatagtgtt aacagcagac cgcagtctga tgacgaatta tagagggaac ttcctttatg
     2041 ggtttattgc gtgcggtcca tacgagttag ttcctgaatt tgtatttgat aagttgtttt
     2101 gtcccagtgt ggaaactgac aagaatagtg gtgaagtaaa ggttgcccaa tgcggactaa
     2161 gaagaatcga aagcgccctt ctggaagact acagcagaaa tgagattatg atagctcacc
     2221 ctgaaatgct cgatcgctgc attggacctg acacgaaggt gctgggagtg aacgtcatgg
     2281 acccattagg gatggcccca gtaactacga caatgtcgcc agagaagcta tcctatgttg
     2341 caatgaaatt caagaagatg tgtgcctcca taattcagct gaaaaagaaa tatggattca
     2401 aggtagttgt aggaggaaat ggatcttggg aattggccaa gccagatcgg atgaaaattc
     2461 atgggataga tacggtagtc atcggcgaag cagacgagct agctctcgac ctcttccatg
     2521 atttggagaa cggtgatgca ccggaggtac tgcatacttt tgttagaaat atcgaaaaca
     2581 ttccagtcat caaaggcccc acagttaatt ctttggtcga ggcaatgaga ggctgtggaa
     2641 gaggatgtga tttctgtgat gttaataaga gatccaagaa agatattcca ctcgagaggt
     2701 tgcaggcgga agcaaaaatt aatctgaact atgggtttga ttctatatgg cttcagtcag
     2761 acgaaatgtt actgtatggt tgcgacaata aggattttgt acccaatgca gatgcaataa
     2821 ttgacctatg gaagggatta aaattggtag gagcaaattt cgtgggtacg acgcatatga
     2881 ccttgtctgc agttgcttcg tcacctgatc taatcaagaa attatctggt ataaatgata
     2941 tggaatcaaa tgggcgatgg ttagcgacta atcttggagt ggagacagtt gctccgcgat
     3001 tagtaaagaa acaccttggt gtcaagacca aaccttacca accagatgaa tggggctctg
     3061 tcgtaagaga aggatgcaaa atactgaatc agaaccattg gtttccggcg ttgaccctta
     3121 ttattggatg gcccgacgaa accccagatg agactcaata caccatcgac ttgatagagg
     3181 atttcaaaga aatgaggatg cggggacttg ttgcccctct gttataccaa gacttttctg
     3241 aaaagaattc tatgcatttt gcaaatctaa acgaagctca atttacatta ttctggaaat
     3301 gctggcagca taatcttcgc gttattaatg atatcattcc aataatcata aggaacaaaa
     3361 cttacggtcc gcctatgaag cttttcatgg ctatattgat taaggcaggt acctgggcaa
     3421 taatgaggta tcttcgggga ttagcgaagc aattgtttaa tggacaggtc ccagaagatg
     3481 tggttgagcg atattctcgg aaccgctcgg tgactgcgtc tgtgccacag cacctatgag
     3541 aaatatctcc tctgcttgat gaaatattag tttagtgaat tgattcgtta ggtttttgct
     3601 tggataaact ctcaattaat tcaatcgcct tgtctgccac agtggctgat ttaggagtca
     3661 aaatcacaaa ataattcttg tctgctctct ctaccgaaag cacattctta tatttcttag
     3721 tcgagatatc aaattctatc attccagggt ccatcttgcc cttggaataa atcatcatca
     3781 atacgtcacc tgaaagaggg gtaaggggta ctatggaaaa tatgtaacct ctgtaagaac
     3841 ttactggaag aacttgtttc atatatggtg caacggatat aagatataaa aaaacctcct
     3901 ctacagttga aaattcttca aattcaaatt tcatatgctt aattgcttat ccgtcagtga
     3961 tataagtata aggtttgagt ctcgatacct ttaaccatat gattcaaatt tcacatcata
     4021 agttccatct ttccttttgt ttctttctgt tacaaagccc ttcggaacca agtaatccaa
     4081 agctccatca acagtgccct gccaaccaca aacataaaac atggtatttt cagtagtaat
     4141 cctgtccccg accaattcct ctaaaggaga tctatcagtt ccaagcttcg gtctaagaaa
     4201 agactcgact cttcctttct gcccgttcca acttctatta aaccactcct gaggtctact
     4261 gatactagct ctataacgaa agttccattt atccttcccc tgatcaagac tttcgttttc
     4321 taaatcagtt agaagctctc tgtagcttaa ttcgtccaca taactggcac cgtgtaaaac
     4381 aactatttcc ctcttactgc caatcgcctt cagatggaga gagtatgcaa tgaatggcgc
     4441 caaaccagtt cctcctccaa taaggaccat ccgcctatta tctggtgaac catcaggcat
     4501 tttttcattt atagtaaatg ggccagttgg tttcaaccac aaaacttcat ctccttctct
     4561 cttgttaaac aattcagtgg tgaggcgacc tgggacaggt tttctaaccc atcggataac
     4621 caattcgaac caattttttt gttctggtgg tgaagcaata gaataagctc ttctgacaat
     4681 cttgccttca ctaggaacat cgaggccaat agtaacaaat tggcccgctt tgaaatcagg
     4741 gacagagcct tctgaaggct taattttaaa tattgctaaa tcttctttca gaacacggac
     4801 atacgaaacc attcctttat tgtccactgc catacaggtt tgaaaatcca tctacgtaaa
     4861 taaatacatt gtcaatttgg gttcaatcat gacctatttc ggttaaatat gttgaaccat
     4921 aagtaataga ctatgcccga ctggattaaa aacatgagaa gcaggcactt acatgagatt
     4981 gaagatttgg aaagaatcat tagtgaaaat agcactgaac agaaaacact gtcagaacac
     5041 ttcaaaattt ccatgaataa atttgctgga gatcgatcag tcgagacttg ccttgatgcg
     5101 cttaatgtct caattcagtt ggccagtata agaagaaaat tgatggaggc ctatgaacaa
     5161 tatgcgagat tattagaagg agagataatc aggttaagaa gactttgcga agataaagta
     5221 tgatctactt cctcgaataa catacttcat tcgatatctt aagcttactc aaatacaatt
     5281 ctatttctta tcatacctag attttctata gaaatttcca caatgtcacc atctttgaga
     5341 tactttggtt ccttcataga cattgccact cctgcaggcg ttccggtgga tataatatcg
     5401 cctgcttcaa gagtcataat cctgctaaga gatgaaatta tgtttttgat agagatgacc
     5461 attttactac tcgaagaatt ctgtcttatt tcaccgttga ctttagtcac tatccctaaa
     5521 ttttgcgggt cttcaacttc atcttttgtt gttatccaag gtccacaagg tgcaaaagtg
     5581 tcaatgctct ttccacgcgt aaactgctta tctttgaatt gaatgtccct agccgaaaca
     5641 tcatgcatga tcatatagcc aaacacgcat tcaagcgcat tttcaggttc aacttttttt
     5701 acgtcctttc ctataatcac ggcgatctcg gcttcgtagt caagcctctt tacaaaactt
     5761 ggacaaatga tatcattgaa cgggtcgttc aaagcggttc tgggttttat gaaaataact
     5821 ggttcatcgg atggtgccag acccgcatca cgagcatgat cataataatt aaaggcaaga
     5881 caaattatct tagacggatc tggaattgga gttaatagat gcacttcttc gacttgatgc
     5941 gaaaacctga ttattggtaa attcttagta acctcatcaa tccagccctt gaagagaaat
     6001 tcctttatgc tgtgaggtat tggtattcca gtttgctctt gaaaatcaga tttggaaacc
     6061 agccgatttc cgtcttccga aataatccca tacgtgtcgc ccaatttgtc actccaaact
     6121 cttgctatct tcattttttt gcttctacct atgtgtatat gtggcagact taccgttgag
     6181 aagactacaa aatccaaacc taataaattg cactaaagtg ccagctttca gtttcgaaac
     6241 taatgattcg gcatatcctg ttttcaattc taatctgttg ggattgtatt tatcacctat
     6301 gaatagttct tttggaactt tgacgctgaa ctcgactgca tcattctctg caacccattg
     6361 aattttcttc atattctgaa tcacgcggtc accttcatag gacccgatta agactttttt
     6421 attattttca tatctgactt ctaatatctt gatgttatat agttccatta gtctaacttt
     6481 ctgcccaatt tgcaggtctt ccgcgtctgg ggatgtaata tagaacttat ttgcaatttc
     6541 tacttctcta atgccgagat cttgcgtggg gtgattacga agctctattt tcccgaactt
     6601 acccccttca actcttaact ccacgggaga agacacaaag aacaatttca gcgaaattgg
     6661 gtctatcatc tttctgttga ttgattctaa cgtttcaaac ggtggtttgg tttctgctag
     6721 agtgatacca agccctagga tgaattttcg gatagcctct ggaacaaagc ctctgtggtg
     6781 caaggcaata agtgttggta aacgcggatc atcccacgat gaaatgatac cgtcttctag
     6841 taaaggtttg atcttcctct tagaaacagg cattccatca aattccaatc tagaaaactc
     6901 tatgagtata ggacttctca ttttaagttt cgacaaaata gaatagtata attcgttgcg
     6961 tagctcatat tcctttgtcc gaagtgcatg ggtaacgccg tccatactgt cttctatcgg
     7021 cgcagccaag tcatacgtag gccaaacacg caccttcgat cccaataatg ggtgtg
//
LOCUS       DATLQL010000518         1341 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2613421, whole genome shotgun sequence.
ACCESSION   DATLQL010000518 DATLQL010000000
VERSION     DATLQL010000518.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1341)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1341)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1341
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2613421"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            192..1286
                     /gene="radA"
                     /locus_tag="VNB68_05335"
     CDS             192..1286
                     /gene="radA"
                     /locus_tag="VNB68_05335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair and recombination protein RadA"
                     /protein_id="HVD36804.1"
                     /translation="MIDKRASTPENESDNITNDVSSQASSTTPVVIDLEIQDIEGVGP
                     TTARKLKEAGIVSVMDLAVTSADELAVDLNSSKETAATFIMAAQRLLRESNILEKEFV
                     TAESALEKRKSLIRCSTGSRALDELLLGGIETQAVTEFYGEFGSGKSQVCHTLSAIAT
                     QPTEAGGLNGSVIYIDTEGTFRPERLNQIARARELDPSHVLKNVAVCKVYNSSHLELI
                     IKDLGKYVNDFNAKLVVIDSIISLHRAEFAGRGTLADRQQRLNTLLHKVIRLAEIFNI
                     AVVITNQVQSSPDTFFGDPTKAAGGNVLGHASTYRIYLRKSGENRTARMIDSPYHPYS
                     DTKFTLNEKGTDDLEDELSSLKKKNKKVEE"
BASE COUNT          466 a          236 c          267 g          372 t
ORIGIN      
        1 taagcaattc acagatattt gattagacaa aaatgattag aaagtatggc ccatactctc
       61 cgaatctata gcttttacat gattagaaag tataagttag ccgcaggaga ctcaaaaaat
      121 ggtgagcaac tccccctccc ctattcagac cttctcatat taatatacct agtcgataag
      181 aacttatgga tatgatagat aaaagagcat ctactccaga gaacgaatca gataacatta
      241 caaacgatgt atcatcccag gcttcgtcaa ctactccagt tgtcattgac ctagaaattc
      301 aagatatcga aggtgtcgga cctactacgg ctagaaaact caaagaagca ggtattgttt
      361 cggtaatgga ccttgctgta acaagtgctg atgaattagc tgtcgatctc aattcttcga
      421 aagaaactgc agcgaccttt ataatggcag cccagcgact gttacgagag tctaacattc
      481 ttgaaaagga atttgtaact gctgaatctg ctctcgaaaa aaggaaatca ctaataagat
      541 gttctacagg ttctcgtgct ttagacgaac tattgctagg gggcatagaa acacaggctg
      601 ttacagaatt ttatggagag ttcggatcgg ggaaatcaca agtatgtcat actttatctg
      661 caatagcgac tcaaccgact gaagcaggtg gattaaatgg gagcgttata tacatagata
      721 ctgagggaac gtttagacca gagagattaa atcagatagc aagagcaaga gagcttgacc
      781 cttctcacgt actaaagaac gtagcagtat gcaaagttta caatagttct catttggaac
      841 ttataattaa agatcttggc aaatatgtca atgactttaa tgcaaagtta gttgttatag
      901 atagcattat ttctttacat agagcagaat ttgctggtag aggaacgctt gcagatagac
      961 aacagagatt aaatactcta ttgcataaag ttatcagact ggctgagata ttcaatatag
     1021 ctgttgttat aacaaatcag gtgcaatctt ctcctgatac attttttgga gatcctacaa
     1081 aagcagccgg tggaaacgta ttaggccatg cttcaaccta tagaatatac ctcagaaagt
     1141 cgggtgaaaa caggacagca aggatgatag attctccata ccatccatat tctgacacta
     1201 agtttacctt gaatgaaaaa ggaacagacg atttagaaga tgagttatct tccttaaaga
     1261 agaagaataa gaaagttgag gaataagaat aatatgattt agcatacagt aatcagtttc
     1321 tcctcaattt ttttatttgg a
//
LOCUS       DATLQL010000519         2947 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2261142, whole genome shotgun sequence.
ACCESSION   DATLQL010000519 DATLQL010000000
VERSION     DATLQL010000519.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2947)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2947)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2947
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2261142"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(298..1248)
                     /locus_tag="VNB68_05340"
     CDS             complement(298..1248)
                     /locus_tag="VNB68_05340"
                     /inference="COORDINATES: protein motif:HMM:NF028479.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-bladed beta-propeller"
                     /protein_id="HVD36805.1"
                     /translation="MVSVLGFMILLNATNISQNSIAMPGQESYQFVRSWGGQGSNDGQ
                     FLLPHSLAIDASGNIYVTDTGNNRVEKFSPNGTFISKWGSIGTGDGQFVRLHDINVSP
                     DGKFVYTVELSNHRVQKFTSNGIFVTKWAYENTGGEGASRQPHQLAVDSFGNVYLTDR
                     ANSEILVFDGNGKFLTRWGSKGTEAGEFIKPHGIVFNSKDQMYITDMGNSRVQEFYKN
                     CTFIKMWGSLGQEEQGKFSDSIPGIAVDRLDNIYVIDRLQSVIQKFDGNGTFIKMWGS
                     KGSTNGTMKKPEDLAINSMTENVYVTDTKNSRIQEFSEVR"
     gene            complement(1278..2537)
                     /locus_tag="VNB68_05345"
     CDS             complement(1278..2537)
                     /locus_tag="VNB68_05345"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HVD36806.1"
                     /translation="MKLLGVLSLILFLYSISFLIYGNNFTLNAQSDLRTTKHRDIVID
                     LGNKIKTNAQLTLPDIGKGPFPGVLLITGSGAEDMNETAGFIRIDNKTGDRTYPPVPF
                     FQIADYLSERGFTVLRYDKRGIGTNHTILDSNIWGNLTLDDITQDANKALAVLIHQSE
                     VDPKRINIIGHSEGTMIAPRVAMDNPDKVDNIVLMGAVDNQSKILEFQTVALPLLYAK
                     EVLDKNHDGTLSVLEASRDITFERLVGGNLSLILTQNVENGTKTPKVEYNANNDTHIN
                     IESELKPVLVNHSKSLFAPSKSAPSETSGKCTNLEGCPMYSSSFLKFEPNLSNIGSVP
                     TNTSILILNGENDTQTPVQGALVLRQKLTELRHPDHILITYPNLGHEFYPSTQWLTQN
                     GPIEQYVLRDLYSWLEAHSGLTSLSTR"
     gene            complement(2733..>2947)
                     /locus_tag="VNB68_05350"
     CDS             complement(2733..>2947)
                     /locus_tag="VNB68_05350"
                     /inference="COORDINATES: protein motif:HMM:NF018893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1428 family protein"
                     /protein_id="HVD36807.1"
                     /translation="GIANIAKTIAADDDEEVWLELILYRDRKHKDEIGTKMRNDESMG
                     SLYQQSLDLVTPGTGFILGEFTRLMI"
BASE COUNT          836 a          590 c          531 g          990 t
ORIGIN      
        1 agagtttgag gtaagcttta gaatttaagt cgggccctca aatagggtaa attttgtcac
       61 caattcgacc agctatatat aatttatctt tgacgtcaga gtaatatttt tgggtctcaa
      121 aatcatgaca aatttgattc acaaacggcc aggcttcaaa ttgtcaatca ccatgagcat
      181 acgattgtaa gaatcgacgt ttatgaaacg cggatgtttt agttttgggt caatgaatgc
      241 taatcaaata ttctttcatc aaagtaaatg ctgccgaact tggtcaccta cttctatcta
      301 ccgaacttca ctgaattctt gaatccgtga attttttgta tctgtaacat acacattctc
      361 tgtcattgag ttgattgcca agtcttctgg tttcttcatt gttccattag tagaaccttt
      421 ggatccccac atttttatga atgtaccgtt accgtcaaat ttctgtatga cagattggag
      481 tctatctatg acatatatgt tatctaatct atcgacggct attcccggta tactatctga
      541 aaattttccc tgttcttctt gccctaagga tccccacatt ttaatgaagg tacagttttt
      601 gtaaaattct tgcactcgtg aatttcccat atcagtaatg tacatctgat ctttagaatt
      661 gaagacaatt ccatgaggtt ttatgaactc ccctgcttca gttcctttcg aaccccacct
      721 tgttaagaat ttgccatttc catcgaacac taggatttca gagttagctc tatcagttaa
      781 gtagacgttg ccaaatgagt cgacagccaa ctgatgaggt tgtcttgaag ctccttctcc
      841 gccagtgttt tcatatgccc actttgttac aaaaatacca tttgaagtaa acttctgaac
      901 acgatggttg ctcaattcaa cggtgtaaac aaatttgcca tctggactga cattgatatc
      961 gtgtagccga acaaattgtc catcccctgt tcctatcgag ccccatttag agataaatgt
     1021 accattagga ctaaactttt caacacgatt atttcctgta tcagttacat agatatttcc
     1081 agatgcgtca atggctagac tatggggcag aaggaactgt ccatcattac ttccttgacc
     1141 accccatgat ctcacgaact gatagctttc ttggccaggc attgcgatag aattttgtga
     1201 aatgttagtt gcatttaata aaatcataaa tcctaaaact gaaaccaaac agagcgacat
     1261 cgttgaccga gacaattcta acgagtagaa agagacgtta accctgaatg agcttcaagc
     1321 catgaataaa ggtctcttag gacatattgc tctattggac cattttgagt tagccattgt
     1381 gttgatggat aaaattcgtg tcctaaatta ggatatgtaa tcaagatatg atcaggatgc
     1441 cttaactctg taagcttttg ccgcaacact aaagctcctt gaactggagt ttgtgtatca
     1501 ttttctccgt tgagtattag aatgctggtg tttgtaggaa cactgccaat attacttaaa
     1561 ttaggctcaa acttaagaaa agagctcgag tacatcgggc aaccttccag attagtacac
     1621 ttacctgatg tttcagatgg tgctgatttt gagggtgcaa agagtgactt ggaatgattc
     1681 actaatactg gcttcagttc tgattctatg ttaatgtgag tatcgttatt ggcattatac
     1741 tctacttttg gagtcttagt gccattttcg acattctgtg taagaatcaa gctgagatta
     1801 ccaccaacga gacgctcaaa agtaatatct ctggaagctt ccagaactga gagtgttcca
     1861 tcatgattct tgtccaatac ttcttttgcg tatagaagtg gcaaggctac ggtttgaaat
     1921 tcaagtattt tcgattgatt atccactgct cccatcagca caatgttatc taccttatct
     1981 ggattgtcca tcgcaactct tggagcaatc attgttcctt cactatgacc gattatattt
     2041 atccttttag ggtcaacttc agattgatgt attaatactg ctaaagcttt gtttgcatct
     2101 tgtgttatat catcaagcgt cagatttccc caaatgttac tatctagaat tgtatgattt
     2161 gtacctattc ctctcttatc atatctaaga actgtaaatc ctctctcgga tagataatca
     2221 gctatttgga agaacggtac cggaggatat gtcctgtctc ctgtcttatt gtcaatacga
     2281 ataaaacccg cagtttcatt catatcttct gctccagatc cagttataag gagaacacca
     2341 gggaatggtc ctttgcctat atcaggaaga gttaattgag cattagtctt tattttgtta
     2401 cctaaatcta taactatgtc tctatgtttt gttgtccgta agtctgattg agcattgagc
     2461 gtaaaattat taccataaat taagaaggat atcgaataaa gaaaaagaat taatgacaga
     2521 acccctagta atttcaatgt ggaaggtcac atatgtgaag tatataagaa tagcgtccta
     2581 ttttgggatc aattctgtca cgcgttctaa attattttgt attatttcat tttccaggtt
     2641 ggccttagta atgtttccaa tctgtcattc taacaacaag ccaacctcca gttagtaaaa
     2701 tttccaagtt tttcgattcg atctcctttt gtctatatca tgaggcgggt gaactcgccc
     2761 aggatgaagc ccgttcctgg agtgacaaga tccaaggatt gttggtaaag tgagcccatg
     2821 ctttcgtcat ttcgcatctt tgttccgatt tcgtctttat gtttacgatc ccgatacaat
     2881 attagctcca gccaaacttc ttcatcatca tcagcagcaa tagttttggc aatattggct
     2941 ataccat
//
LOCUS       DATLQL010000520         1268 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2084895, whole genome shotgun sequence.
ACCESSION   DATLQL010000520 DATLQL010000000
VERSION     DATLQL010000520.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1268)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1268)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1268
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2084895"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..636)
                     /locus_tag="VNB68_05355"
     CDS             complement(<1..636)
                     /locus_tag="VNB68_05355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HVD36808.1"
                     /translation="MLEGIMKNIDPVVAHILNEALDSKDISIKQAVELFDTSGLEINA
                     ITMVADILRKCSVGDFVTYVVNRNINFTNVCIKKCGFCAFSRDFRNEEGYFLPVEEII
                     RRTTEAWKLGATEVCIQAGLPPKMDGNLYVDICEEIKKAHPEIHIHAFSPEEVQYGAY
                     CSGKPVEEYLKMLKDAGVGSLPGTAAEILNQEIRDIISPGRISAKEWIHVIM"
     gene            complement(642..>1268)
                     /gene="cofG"
                     /locus_tag="VNB68_05360"
     CDS             complement(642..>1268)
                     /gene="cofG"
                     /locus_tag="VNB68_05360"
                     /EC_number="4.3.1.32"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7,8-didemethyl-8-hydroxy-5-deazariboflavin
                     synthase CofG"
                     /protein_id="HVD36809.1"
                     /translation="ERLLGKNMPHEFAPSKNPKARKKILENAGDLKIPMTTGILIGIG
                     ETVEEIIDSLYMMKEINERYGNIQEVIIQNFVPKSTTEMGEIPRPPLNYFIRIIAISR
                     IIMPDMNIQVPPNLSPNNYGLYVDAGINDWGGISPLTIDHVNPESPWPDIKELMDVTK
                     NSGYILRPRLPIYPEFILDKNEFIHDNLWKFIRALSGSDGLVKEDYLN"
BASE COUNT          348 a          286 c          219 g          415 t
ORIGIN      
        1 catgatgacg tgtatccact ctttggcaga tattcttccg ggagaaatta tatcacgtat
       61 ttcttgattc aatatctctg cagctgtacc aggtaaactt cctacacctg cgtctttcag
      121 catcttaaga tattcctcaa caggctttcc cgaacaatag gctccatatt gtacctcttc
      181 aggagaaaaa gcgtgtatgt gaatctctgg atgtgctttt tttatttcct cgcatatgtc
      241 aacatacaga ttaccgtcca tcttaggtgg aagtccggcc tgaatgcaaa cctcggtcgc
      301 tcctagtttc catgcctcag ttgtccgcct tatgatttct tcaacaggaa gaaaatatcc
      361 ttcttcattc ctaaagtccc tactgaaggc acagaatcca cacttcttga tacaaacatt
      421 agtgaagttt atgtttctat tcacgacgta tgttacaaag tccccaacag aacactttct
      481 aagtatgtct gcgaccatcg taattgcgtt tatttctagt ccactagtat caaataattc
      541 aactgcctgt ttgatggaaa tatctttcga atctagagct tcattcaata tatgggcaac
      601 aaccggatct atgttcttca ttatcccttc cagcattgat gtcaattcaa atagtcctcc
      661 tttaccagtc cgtctgaacc agaaagcgct cttataaatt tccacaagtt gtcgtgtatg
      721 aactcattct tgtcaagaat gaattctgga tatatcggta gcctaggcct caaaatatag
      781 cctgaattct tggtaacgtc catcaattct ttgatgtcgg gccaaggtga ctcgggattc
      841 acatggtcga tggtaagcgg agagatacca ccccaatcat taattcctgc atcgacgtac
      901 aacccataat tattagggct taaattggga ggtacttgta tattcatatc gggcataata
      961 atcctcgaaa tggcaataat cctaataaaa taattaagcg gaggccttgg aatttcgccc
     1021 atttcggtag tagatttcgg gacaaaattc tggataatga cctcttggat attaccatat
     1081 ctttcattaa tttctttcat catataaaga gaatcaatga tctcttcaac tgtttcccct
     1141 attccaatca agatccctgt agtcattggt attttgagat cccccgcatt ttcaagtatt
     1201 ttctttcttg cttttggatt tttgctaggc gcaaattcgt gaggcatatt cttaccaaga
     1261 agacgctc
//
LOCUS       DATLQL010000521         1401 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_662467, whole genome shotgun sequence.
ACCESSION   DATLQL010000521 DATLQL010000000
VERSION     DATLQL010000521.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1401)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1401)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1401
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_662467"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(991..1176)
                     /locus_tag="VNB68_05365"
     CDS             complement(991..1176)
                     /locus_tag="VNB68_05365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36810.1"
                     /translation="MSTSKDRIYSCRHCGAEYIAYPPDDVHSESDVNQVPDSIAIPYH
                     CIKCDKENKLYWTRPVP"
BASE COUNT          401 a          284 c          255 g          461 t
ORIGIN      
        1 aaatgttgta ttaggggttg taatgtgcac tatatggtgt tttagctaaa gatttgttca
       61 ttgaatgttt cttgaccatt atcataccca aagatacgtt ctgtcgagtc tcctaaggtt
      121 ttctttggac gtacataccc actgagatat gcactgcaag tagctgtcac taaatatgtt
      181 atttccaatg atatagaggg tcaagactat cgatcatcat acttccaggt aggccctaga
      241 ctcaacgact tgctaaccta tgaaaccatt cattcgttga gtttcctgcg gcatgttatt
      301 cactcttaaa tattgcttcc ctcagttctc ttgttctatc gaagagaatc ttgctcgctt
      361 ctatcatctc tacaggacag ccaacacagt aaaataatag acaacaaata agactacagg
      421 actagcggtc tagctaaata cgattctcct taccatctat cagacctaaa ccatgtatgt
      481 gattacggcg gcaggagggc cagactcatt atcttccatt tgtggtactc ttgagtctcc
      541 tgcggcttta cttatatcat atattttcca ataatatatt gactcggagg ataacttcaa
      601 cacccatctt acccggagag tgttgtcgac caactaacca tcgggttatt ctccgagtct
      661 atttttctac agttgtacca taactcgtac tttaactcca cacctttcca tttccttaaa
      721 tgatccaggt agtttttctt ttccataggt tgaagataag tctttattgt attaggattg
      781 aaaccaaagg cattttatct cctatattat cgccaagtga atctgcgact acatcggggg
      841 tttcaaatcg attccctcga ttcactttat gcttgtttgg ataacgctaa agataacgct
      901 ataagtagat gctaacagaa agaaaaaaga aagtacagaa ggcattgaga ctaaatggct
      961 actatctaac aaaaaaataa gaataaggat ttatggcact ggcctggtcc aatatagttt
     1021 attttcctta tcacatttta tgcaatggta tggtattgca atactgtctg gaacctggtt
     1081 gacatcactt tcggaatgaa cgtcgtctgg tggataggct atgtattcag caccacaatg
     1141 acggcacgaa taaattctat cttttgaagt agacatctaa acccacctag ccttcttttc
     1201 tctttaaagt ttgcatgatt aaaatttgtt tgtagctaac ttggcgcgat ctatgaatga
     1261 tctataacaa gaggtttctg acttggtatc aagtcattca tctgtcgtcc tttgcagcta
     1321 gtatgacgaa tccttttttc ctaatagtga ctttgctgga gactgaatag aaagactctg
     1381 gtgatgaagt gttgcgtcaa t
//
LOCUS       DATLQL010000522         1482 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2613713, whole genome shotgun sequence.
ACCESSION   DATLQL010000522 DATLQL010000000
VERSION     DATLQL010000522.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1482)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1482)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1482
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2613713"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..391
                     /locus_tag="VNB68_05370"
     CDS             <1..391
                     /locus_tag="VNB68_05370"
                     /inference="COORDINATES: protein motif:HMM:NF013936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HVD36811.1"
                     /translation="SKLVQVEDNIKNNAVKQATEIIQSISDRITRHAVEEEARLMRVI
                     MRKAKTESSESIKIMQEHNWVIDFLKSNLLFFARARSHSSSLSSDSKDFKDAKKNINE
                     FVINLRKHFEEEEQIVFPLTLRAEATN"
     gene            480..1022
                     /locus_tag="VNB68_05375"
     CDS             480..1022
                     /locus_tag="VNB68_05375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin family protein"
                     /protein_id="HVD36812.1"
                     /translation="MPIDSDFPTNHKVIGKHSHADGEHFHFVWGPGRSDAETSTKPEV
                     QETYKARGEDYVPLGFHGTMVAVDWDSCYADGACIEACPVQVFQWYRTEQDVPAIQMA
                     NATSAGTGQDHEKDGRVDYSDKSDPIREHDCIWCMACVSVCPPQAIKVDQSNLEYHEK
                     SAGTFNEDLARGSAPPPHAH"
     gene            complement(1177..>1482)
                     /locus_tag="VNB68_05380"
     CDS             complement(1177..>1482)
                     /locus_tag="VNB68_05380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36813.1"
                     /translation="EARLKLENTVEFTKMANESPIFKERFALVDSPSEYYVIVSFLDL
                     FEYVFHLNQTKMIDKLVWNRWRILTETIMTIPKFASVWSKTKESHPDKDFRDFIDSL"
BASE COUNT          505 a          272 c          295 g          410 t
ORIGIN      
        1 atccaaactg gttcaagtag aagataatat aaaaaataac gctgttaaac aggcgacaga
       61 aataatacag agtataagcg accgaatcac tcgtcatgca gttgaagaag aagcaaggct
      121 tatgcgtgtt atcatgcgta aagcaaaaac tgaatcatcc gaatctatca agattatgca
      181 agaacataat tgggtgattg attttttaaa gagtaatctt ttattttttg caagagcaag
      241 atcgcatagt tcatcactat catcagactc caaagatttc aaagatgcaa aaaagaatat
      301 taatgaattt gtaattaacc ttagaaaaca cttcgaggaa gaagaacaga ttgtgtttcc
      361 tttaacatta agagctgaag ccacaaatta gtacggatta tgatcatcgc aaaaagtagc
      421 aataggtacg tgtaatgaat gaatgaataa atagcattga aactatattt tattatagca
      481 tgcctataga ctcggacttt ccaacgaacc ataaggtaat agggaaacac agccatgccg
      541 atggtgaaca ctttcacttt gtttggggcc cgggacggtc agacgctgaa acatcaacaa
      601 agcccgaagt tcaggaaact tacaaagcaa gaggagaaga ctatgtacca ttgggctttc
      661 acggtacgat ggttgcggtg gattgggatt cttgttacgc tgacggtgca tgtattgaag
      721 catgtcctgt acaggtattc caatggtaca gaacagaaca agatgttcca gcaatacaaa
      781 tggctaacgc gaccagtgct ggaacaggac aggatcatga aaaggatgga cgtgtggatt
      841 attctgataa atcggatccc atacgagaac acgactgtat ttggtgcatg gcctgtgttt
      901 ctgtttgtcc tccacaagcg atcaaggtag atcaaagcaa tcttgagtac catgaaaaat
      961 ctgcgggcac ctttaatgaa gatttggcaa gaggtagcgc acctcctcca catgcacact
     1021 agacaaatta atactccatc acaacacgaa ctaaaaaaga agcaccaaac taatcagttg
     1081 tacagtttaa ttccagttta gattttaatc tttgtaccca gagcaattat tcaaaggtag
     1141 aagaatgttt ggtagactct aaaactaata cccactttat agtgaatcga taaagtctct
     1201 aaaatcctta tctggatgtg attcttttgt cttggaccac acgctagcaa atttcggtat
     1261 agtcattata gtttctgtaa gaattctcca gcgattccac accaatttgt ctatcatttt
     1321 ggtctgatta agatggaaaa cgtactcaaa caagtcaaga aatgatacta tgacgtagta
     1381 ttctgaggga ctatcaacca gtgcaaaacg ttccttaaaa attgggcttt catttgccat
     1441 ttttgtaaat tctaccgtat tttcaagctt gagtcttgct tc
//
LOCUS       DATLQL010000523         1090 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_128601, whole genome shotgun sequence.
ACCESSION   DATLQL010000523 DATLQL010000000
VERSION     DATLQL010000523.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1090)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1090)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1090
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_128601"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            681..1055
                     /locus_tag="VNB68_05385"
     CDS             681..1055
                     /locus_tag="VNB68_05385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HVD36814.1"
                     /translation="MHAEPMDGEAPRCVLTRVWGALGRRWSLHILYILTTKEVIRFNE
                     LKRSLPGISSTVLSERLLELEREGLVTKKIFPEVPPRVEYSMTLRARELNVILKELGH
                     WAEKWKSPVSMKTPSMAAQKNN"
BASE COUNT          366 a          194 c          238 g          292 t
ORIGIN      
        1 ttcaggctaa accgttaaaa tctggtaagg tcagcttgat ctacagcacg cagtcagaaa
       61 atatatgatg actcaaaaag gaaaataatt ttgcactatc caaaaaagaa atcagcaaaa
      121 tcacggaaga ttatgataag caccgattcg aagtatccag aaataacatg ttggggttgg
      181 atgagatgct aaagaaaaaa actgtggaca attgcagatt cgccaaagac agacagtaaa
      241 gagaagataa aggcaattgt gttgattggt cagtacttag agagagatat attgcagttt
      301 attagaaatg aatcatgtct taatgagcca gtgaagcata tatagcacat taagcggtgg
      361 tcatcctatc aaactagtac ttcaagttgg taactatcat atgctatcgt tctaatgcca
      421 aaggacgaat ggtttgtatg aaggatggac taaaacgagc tcaagttatc aaatctaaaa
      481 tatcttcgct ctcttagtgg ttttccctat ctgattaatg ttgtattatt ttataatatt
      541 ctgactcttc tcaattatca gtatctcagg agagaggcag cgttctcgga aaaatcttgg
      601 aaccatctcc ccaacatcat ctgatgcata actaaaatgt cgcaataatt ttattagtaa
      661 gtcaatattt actgctaggt atgcacgcag aaccaatgga tggagaggcc cctcggtgtg
      721 tacttacccg tgtctgggga gcacttggaa gacgttggtc actccatata ttgtatattc
      781 tcactacaaa agaagtgatt aggtttaacg aattgaaaag atcattgcca ggcattagca
      841 gcaccgtttt atcagagcgc ctactggaac tagagcgtga aggtttggtt actaaaaaga
      901 tctttccgga agtgccgcca agggttgaat acagcatgac tcttagggcg agagaactta
      961 atgtgatatt aaaagagctg ggccactggg cagaaaaatg gaagagccca gtaagcatga
     1021 agacgccctc gatggctgcg cagaaaaata actagtgcag caactggaat tacttatcct
     1081 gcgctatgac
//
LOCUS       DATLQL010000524         1087 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1726474, whole genome shotgun sequence.
ACCESSION   DATLQL010000524 DATLQL010000000
VERSION     DATLQL010000524.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1087)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1087)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1087
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1726474"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(593..892)
                     /locus_tag="VNB68_05390"
     CDS             complement(593..892)
                     /locus_tag="VNB68_05390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36815.1"
                     /translation="MTEPLSPADEINAERREVFKDSVKINEMIEDEIKVLKEKEDEEG
                     LPQDFRLSDYASDHLKFKVWTLMQKGQSKEVIDHLIDAYCVGYYDGIYDAHLREQ"
BASE COUNT          270 a          231 c          201 g          385 t
ORIGIN      
        1 agaagaccaa agaacggcac ggtgtccctg taggaaggtg tccttgtccc tagaatgtcc
       61 ctgaagtggt gatcaaaaaa agaatgagtt tcagcatcag aatgtttaat atctgtcctt
      121 tggaaaataa cgctagtcaa actgcaacta gaacctcgct attgcgtgct ctactcatat
      181 ttaggcgggt tatagttatg ggccttgact tcgacttcct cttgcctgtg ttggtgggct
      241 ttggtaatgg ggccccaaca ctattcttat tttttatcaa tctcaatcct ttgcagactg
      301 ctccttcagt ttcaataatt catttatcaa atcatcataa ctttggcgcc ttgttgatgc
      361 atctttgagt ctctcccgtg tcggtcgctt taactctatc acacagacat ttcggtctct
      421 tctaatcctc gttttcgtgg aaatagacat agtaggcatg gacacttata agcaaggttc
      481 aaaagactaa aaggattacc ttagtaagtg aaatgattta cttagtcagt tagtttgagt
      541 gaaactaata cgaatattac aaagggtaac ggttgttcac taagtgacgg acctactgct
      601 cgcgtaagtg agcgtcgtat attccatcat aataaccaac acagtaagca tctatcagat
      661 ggtcaatcac ttctttactc tgaccctttt gcattagtgt ccaaactttg aatttaagat
      721 ggtcactagc atagtctgat agtctaaaat cttgagggag gccttcttca tcttcttttt
      781 cttttagaac ttttatttca tcttctatca tttcatttat ctttacggag tctttgaaca
      841 cttcacgtct ctcagcatta atttcatcag ctggtgataa tggttctgtc attttctgat
      901 tctcctattg taaaccaagt tacttttctt tcttacctgt ttcgtcagtc caaaatttgg
      961 ctattgaagc gtcttgctgt cttatttttt ctaattctgc taaaagctcc ttctcacggc
     1021 tgcgtcttat tttgcgacgt gtttgactgc ggtgtagtgc tagctctacc tccttctctg
     1081 tcaaggg
//
LOCUS       DATLQL010000525         1149 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_842056, whole genome shotgun sequence.
ACCESSION   DATLQL010000525 DATLQL010000000
VERSION     DATLQL010000525.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1149)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1149)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1149
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_842056"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            326..>1149
                     /locus_tag="VNB68_05395"
     CDS             326..>1149
                     /locus_tag="VNB68_05395"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HVD36816.1"
                     /translation="MTFGEDWGSMLLGASKEEAKKIFDLFVSKGGNFIDTANVYQNGT
                     SEKYVGEFISSEREKFVLATKYTLTTNPDDPNASGNHRKNLVQSVDASLRRLKTHYID
                     LLWVHVWDSMTPVEEVMRSLDDLIRSEKILYIGISDAPAWVVSHANAIAELRGWSSFI
                     GIQIMYSLIERSAERELLPMATTLDIGTTAWSPLGGGVLSGKYNRQNSNESKRFNVNN
                     AMSASFVNERNISIATEVQAIAKEINKTPSQIALSWIRQQQKDKDKGVIIPIVGART"
BASE COUNT          389 a          184 c          257 g          319 t
ORIGIN      
        1 tacaattgca gaaaaggaat atctaacgtt ttagctgacc tagccattga gaagcatgtt
       61 ctagtgaaac agaattattt gaaaaacttc ttgaatgtga tatagaaaca atgcatagag
      121 gtcccaatcg cggcttaatt tgaaactcca atcaaagaaa gaaaagaagg ttatatgtaa
      181 gaggcattga gtgatgtact gataatttgt aacatttgta aacctgctgt cttattaatg
      241 acatagcatc tcatgattgt tgtatatgag atacaaactc cttggaaaaa gcggactgcg
      301 agtttctgag ctatgcctag gcgccatgac gtttggagaa gactggggtt cgatgttact
      361 tggagcttct aaggaagaag ctaagaaaat atttgactta tttgtgagta agggtggaaa
      421 ttttattgat accgcaaatg tctaccaaaa tggcactagt gagaaatatg ttggtgaatt
      481 catttcctct gaacgagaga agtttgttct agctactaaa tacacgctca caacaaatcc
      541 agatgaccct aatgcaagtg gaaaccatcg caagaatctg gtccaatctg ttgatgcaag
      601 tcttagacgg ttaaaaactc actacataga tctcctttgg gtgcatgtat gggattctat
      661 gaccccagtt gaagaagtta tgagatcgtt agatgatttg ataaggtcag aaaaaattct
      721 atacataggt atatctgatg caccggcttg ggttgtttca catgcaaatg ctattgcgga
      781 gctgcgtggc tggtcatctt tcataggaat tcagataatg tacagtttga ttgaaagatc
      841 agctgaaaga gagttattgc ccatggccac tactttggat attggaacaa cagcatggtc
      901 tccattaggt ggcggggttc tttcgggaaa gtataacagg caaaatagta acgagtcaaa
      961 aagattcaat gtcaataatg caatgagtgc ttcatttgta aatgaaagaa atatttcgat
     1021 tgcaacagaa gtacaggcga tagcaaagga aatcaataag actccttcac aaatagcctt
     1081 gagttggata aggcaacaac agaaggacaa agacaaagga gttataatac ccattgtagg
     1141 agctagaac
//
LOCUS       DATLQL010000526         3022 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1905380, whole genome shotgun sequence.
ACCESSION   DATLQL010000526 DATLQL010000000
VERSION     DATLQL010000526.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3022)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3022)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3022
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1905380"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..402)
                     /locus_tag="VNB68_05400"
     CDS             complement(<1..402)
                     /locus_tag="VNB68_05400"
                     /inference="COORDINATES: protein motif:HMM:NF014037.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mut7-C RNAse domain-containing protein"
                     /protein_id="HVD36817.1"
                     /translation="MKSVEEIPPNNIGQKYVVDSMFGGLARKLRILGIDSYYASDLRD
                     EDVIQIGLEQNRTIITADRELFSRTVNKKVPAVLLTSSDDLHNAAMILKYHHKEIKFD
                     PSSARCSKCNGILINVSKEMIREKIKEGVYNN"
     gene            complement(371..973)
                     /locus_tag="VNB68_05405"
     CDS             complement(371..973)
                     /locus_tag="VNB68_05405"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HVD36818.1"
                     /translation="MDSIDNVAKKQLREHVDANMTTRVLVRDIMNSPVISASPEDTLR
                     DIALKMSDQKVGSIVISKNELPLGIVTDWDIVYNGVIKDIKPGLIKASEIMKPIHTIE
                     SEESITEAARVLRKNNIKRLGVIYKGRLVGIISASDVIAVTPELVDVVSEKAGIIRGE
                     IGRPASNVSGYCDECGEWSDLLMYSEGTFTCEECRGDTTQ"
     gene            complement(1100..>3022)
                     /gene="rqcH"
                     /locus_tag="VNB68_05410"
     CDS             complement(1100..>3022)
                     /gene="rqcH"
                     /locus_tag="VNB68_05410"
                     /inference="COORDINATES: protein motif:HMM:NF041120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome rescue protein RqcH"
                     /protein_id="HVD36819.1"
                     /translation="VSDIIPVTQSALLFKLHHSREPDIMLMISTQGLWITNTRFKTIE
                     ENPMVNILTREIERSKIVTLEQMGSERIFIVKFKRNDDTERILVVEIFGNGNMILCDA
                     AMTILGLQRAIEVRHRTLRVGLKYVFPPKRGEDVFNVSLEHLLTSKHTVQSDESNVAK
                     WLGACTSMPKKFVDAVIRRSSIQPTAPVNQLTDFEMQSIYTNIMEVVSDVVTGKNHDP
                     AVLTDSSGNALDAFPIRIYDDKNPEIRKVSTFMDAIDYVLGNQILKFAKSQKTMNLDK
                     QMADIKHDLEQQEKAKEEVIIRANSLRNLAKDLMALSQQGFFKLEDTEFDTVLAKHHS
                     RIIKERGKQYLEVADQFIPVTPSFPTLASYLFTRAKELERGIDTIEEASQKIRSKIQQ
                     LHDKTIDVEKKIEFRKQEQKEWYERYHWCFTSDGLLIVGGKDASSNSAIIRKHLTDGD
                     IVFHAEIHGSPFFLLKNGKDKLDSTVDIRQVAQATVSFSRAWKEGLSTADAYWVFPSQ
                     IKKGAPSGQYLPKGSFVIEGKKNFVKNIDLKLAIGLTRLGNSRYSIICGPNEAVPERS
                     VVHAILIPGAVDVVGLAKKIKSEFAKILAQSEPSLVSYIKQITIDDLIKILPTGSSKI
                     LSVGKGRSFDLVQDPS"
BASE COUNT          802 a          690 c          518 g         1012 t
ORIGIN      
        1 attattataa actccctctt tgatcttttc cctaatcatc tctttcgaca catttatcaa
       61 tatgccatta cacttggaac atcgcgctga actcggatca aattttattt ctttatgatg
      121 atattttaga atcatggcag cattatgcag atcatctgat gaagtcaaca agactgctgg
      181 gaccttctta tttaccgttc tagagaacaa ttctctatca gcggtgataa tagttctgtt
      241 ttgttcaagc cctatttgaa tcacatcctc gtcccttaaa tctgatgcat aataggaatc
      301 aataccaagt attctcaatt ttctagccag gccaccaaac atagaatcaa caacgtattt
      361 ttggcctata ttattgggtg gtatctcctc tacactcttc acaagtaaat gtgccctcac
      421 tatacattaa caaatcagac cattctccgc attcgtcaca atatccagat acgttggaag
      481 caggtcggcc aatttcaccc ctgataattc ctgctttttc tgataccacg tccactaatt
      541 ctggggtaac tgcgatgaca tctgatgccg aaatgatacc aaccaatctt cccttataaa
      601 tcacacctaa tcgttttata ttattttttc tcaaaacacg tgcagcctct gtaatacttt
      661 cctctgattc gattgtgtga attggcttca ttatctctga ggcttttatc aatcccggtt
      721 taatatcttt aataacgcca ttataaacga tatcccagtc agtcacgatc ccaagaggaa
      781 gttcattttt gctgatgact atgcttccca ctttctggtc gctcatttta agggcaatat
      841 ccctcaacgt gtcttctggg ctggcagaga ttacagggct attcatgatg tctctaacca
      901 aaactctggt agtcatattc gcatcaacat gttcccttag ttgttttttt gccacattat
      961 caattgaatc catctcttta attgctttac tgattggcag tggaaaactg caagctagtg
     1021 tgaaaatatc aatcaagaac ttatttcgat tggacataaa tcatgatatg ctattagcaa
     1081 aatagcggag ctgttttact taggacggat cttgaaccaa gtcgaatgag cgtccctttc
     1141 ctactgacaa aatctttgaa gaacccgtgg gaagaatttt tattaaatca tctattgtaa
     1201 tttgcttaat ataactgacc aagctgggtt ctgattgcgc aagtatcttt gcaaattcac
     1261 tttttatttt cttggccaat cccactacgt ctactgctcc aggaatcagt attgcatgaa
     1321 caacgcttct ctctggaacc gcttcattcg gaccgcaaat tatcgaatat ctagaattcc
     1381 caagccttgt tagaccaatt gctaatttca aatcaatatt tttgacaaaa ttctttttac
     1441 cttctataac aaaggatcct tttggcagat actgtccact gggagcacct ttttttattt
     1501 gcgaagggaa cacccaatat gcgtccgccg tagacagacc ctctttccag gccctactga
     1561 acgagacggt ggcctgagca acttgcctta tatccacagt ggaatctagt ttgtctttgc
     1621 cgttttttaa tagaaaaaat ggagagccgt ggatctcggc atgaaataca atgtccccgt
     1681 cagtcagatg tttccttatt atcgccgaat tagatgatgc atcttttcca ccaacgataa
     1741 gcaagccatc agaggtaaag caccaatgat atctttcgta ccattccttt tgctcctgtt
     1801 tcctgaattc tatctttttt tctacatcta ttgttttgtc atgcagctgt tgaatctttg
     1861 acctaatctt ttgactcgcc tcttcgattg tgtcaattcc acgttccaat tcttttgccc
     1921 tagtgaaaag atatgaagca agtgtcggga aactcggagt tacagggatg aactgatctg
     1981 cgacttctaa atactgtttc cccctttcct taataatccg cgaatggtgt tttgctagga
     2041 ctgtgtcaaa ttctgtatcc tctaatttga aaaaaccttg ttggctcaga gccattaaat
     2101 ccttggctag atttctcaga gaatttgcac gtatgattac ctcttccttc gccttttctt
     2161 gctgttccaa atcgtgcttt atatctgcca tttgtttgtc caagttcata gtcttctgac
     2221 tctttgcgaa tttcaaaatt tgattaccga gaacatagtc aattgcatcc atgaaagtag
     2281 aaaccttcct tatctcagga tttttgtcgt cataaatacg aatgggaaat gcgtctagag
     2341 cgtttccaga gctatccgtc aatacagcag ggtcatgatt ctttcctgtg accacatcgc
     2401 ttacaacttc cataatattt gtgtaaatgg actgcatctc aaaatcggtc agttgattca
     2461 ctggtgctgt tggctgaata cttgaccttc taattactgc atccacgaac ttctttggca
     2521 ttgaagtaca ggctcctagc cacttggcca cgttagactc gtcagactgg actgtatgtt
     2581 tactagttaa gagatgctcc agtgacacat tgaaaacatc ctcaccgcgt ttcggcggaa
     2641 agacatattt taaaccaact ctgagagtcc tgtgcctaac ttcgatggcc cgttgtaagc
     2701 ctagtattgt cattgcagcg tcgcagagta tcatattgcc attcccaaat atctctacaa
     2761 caagtatcct ctctgtgtca tcgtttcttt tgaacttcac aatgaatatt cgttcacttc
     2821 ccatttgctc taaagttaca atcttgcttc gttcaatttc tcgggttaaa atgttcacca
     2881 tcggattttc ctctattgtc ttgaacctgg tattcgttat ccacaggcct tgggtagaga
     2941 tcattagcat tatatcaggt tcgcgagaat ggtgtaattt gaataaaaga gccgattgcg
     3001 tcaccggaat gatgtcactc ac
//
LOCUS       DATLQL010000527         1148 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_663280, whole genome shotgun sequence.
ACCESSION   DATLQL010000527 DATLQL010000000
VERSION     DATLQL010000527.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1148)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1148)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1148
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_663280"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..335)
                     /locus_tag="VNB68_05415"
     CDS             complement(<1..335)
                     /locus_tag="VNB68_05415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36820.1"
                     /translation="MEPEKIVGLFAIGILLYSVISFTHTNTKAEPLGIKITSPAKGQR
                     IPIDNHNLTVAGISTYNASMNCQVSILMNEMKPYKQATAKGENGTMDYSTWKYIFTSK
                     DFLIKEGDN"
     gene            complement(445..>1148)
                     /locus_tag="VNB68_05420"
     CDS             complement(445..>1148)
                     /locus_tag="VNB68_05420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HVD36821.1"
                     /translation="VEHLIAERKKLINGFYGHSKNDKKRLDESLLPSHYAISLSGEPT
                     MYPKLPQLIKYLKSLSETRSIFLVTNGQEPHMLERLADEEALPTQLYLSTNACNKRMF
                     HQINRPRYKNAWERWWESLHFIAKAKTRTVVRITLIRNYNESPKYMPEFADILSQGNP
                     HFVELKSYMNIGMSTNRLKKNDMLEMEEVKYFATGLNGLMPAFSLMDESEISRIVVLQ
                     NQRRYVERMINFAGS"
BASE COUNT          315 a          219 c          218 g          396 t
ORIGIN      
        1 ctattgtcac cttctttaat gaggaaatct tttgaagtaa atatatactt ccaagttgag
       61 taatccattg tgccattctc acctttcgct gttgcttgtt tgtatggttt catttcattc
      121 atgagaattg agacttgaca attcatcgaa gcattatacg tggatatacc agcaactgtt
      181 aaattatggt tatcaatcgg aattcgttgt cctttggcag gtgatgtaat ttttattccc
      241 aacggttctg ccttagtatt cgtatgagta aatgagataa cagaataaag taatatccca
      301 atagcaaaca atcccacaat tttttccggc tccacttgga taaaccttcg attggtttgt
      361 tgtgcaggag tataaaatat aggttgtaat tagaatttgt catagtacaa aaataactta
      421 acaaggtcac tttgaatata catatcagct tccagcgaaa tttatcatcc gctctacata
      481 ccgacgctgg ttttgtagaa ctactatcct tgaaatttca ctctcatcca tcagggaaaa
      541 tgccggcatt aagccattga gtcccgtagc gaaatacttg acttcctcca tttcaagcat
      601 atcatttttt ttgagacgat ttgttgacat acctatattc atgtaggatt ttaactcgac
      661 aaagtgtgga ttgccctgcg atagaatgtc agcaaattca ggcatgtact tcgggctttc
      721 attgtagttt cttatgagtg taatacgtac tactgtgcga gtttttgctt tagcaatgaa
      781 atgcaaactt tcccaccatc tttcccaggc atttttgtaa cggggtcgat ttatttggtg
      841 aaacattctc ttattgcagg cgtttgttga taagtataac tgtgtaggta aagcctcctc
      901 atcagctaat cgttccagca tatgtggttc ttggccgttg gtcactagaa agatagatct
      961 ggtttcgctc aaacttttca agtatttaat caactggggc agtttaggat acatcgtagg
     1021 ctctcccgac aaggaaatgg cgtaatgtga gggcaatagg gattcatcaa gtcttttctt
     1081 gtcgttcttg gaatgcccgt aaaacccatt gattaatttt tttctttcag ctatcagatg
     1141 ctcgacga
//
LOCUS       DATLQL010000528         1973 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1371200, whole genome shotgun sequence.
ACCESSION   DATLQL010000528 DATLQL010000000
VERSION     DATLQL010000528.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1973)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1973)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1973
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1371200"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..562
                     /locus_tag="VNB68_05425"
     CDS             <1..562
                     /locus_tag="VNB68_05425"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HVD36822.1"
                     /translation="EKSSESGIVDPSWDLEKIFSTLKTNGLNAKYILNTHTHFDHILG
                     NEQVAAVTGAKIIQHENSTSYKDIAVKDGQVITIGTISVRVLFTPGHSNDSISLIVDE
                     DSILSGDTLFVGNCGRTDLPGSNSVAMYDSLYNKIWNLKESMVLYPGHDYGSSTTSTI
                     YAEKMKNPVLGFKSKDSFLKYLNSDD"
     gene            565..1692
                     /locus_tag="VNB68_05430"
     CDS             565..1692
                     /locus_tag="VNB68_05430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00303 family protein"
                     /protein_id="HVD36823.1"
                     /translation="MSSIDIDAKSSGPHKASVTDFSGKNPIFVCVTSYTETSQIPGIT
                     IAGANPELIPCTPAADAEFLYYGQCKSISGVPATPDGIPTPALITRAALRRSRIPILI
                     VDAGSKIKPQLPAISFGIKYGRDIRNQRALERADVERAFEFGKMIGIQLAMSNDILII
                     GESIPGGTTTALAVLTALGIDAKNKISSSMSVNPHELKNEVVSTAMRGLEDQILQLRN
                     DPIDLVSRIGDPMIPSVAGIASGAISQKTRVMLAGGTQMTAVLCLLKAMKIPLDGICI
                     GTTSYVKNDKSSDILKLVRSICDNVPILSVELGLEFSVKKGLRMYNSGIAKEGVGAGG
                     AAITSILKSKGNLDSTSLLHSIEIEYEISIESQRVGSLQNS"
BASE COUNT          643 a          367 c          403 g          560 t
ORIGIN      
        1 tgagaagtct tcggagtctg gaatagtgga tccttcatgg gatctggaaa aaatattttc
       61 gacattgaaa accaatggat tgaatgccaa gtatattcta aacacacata cacattttga
      121 ccacatactt ggaaacgaac aggtagccgc tgtgactgga gcaaaaataa ttcagcatga
      181 aaattctact tcgtacaagg acatagcagt taaggacggt caagttataa cgattggaac
      241 tatatccgtt cgagttctgt tcaccccggg tcattcaaac gatagcatta gcctcatagt
      301 tgatgaagat tccatactta gtggcgatac cttgtttgtc ggcaattgtg gaagaacaga
      361 ccttcctgga agtaattcgg tggcaatgta cgatagtctg tacaacaaaa tctggaactt
      421 gaaagaatcc atggtacttt accccggtca cgattatggg tcttctacca cctcaaccat
      481 ctatgctgaa aaaatgaaaa atcctgtgtt aggcttcaaa tccaaggatt catttttaaa
      541 atatcttaat agcgatgatt aattgtgtct tcaatcgata ttgatgcaaa aagttctggc
      601 cctcataaag catccgtaac tgattttagc ggtaaaaatc ccatatttgt gtgcgtcaca
      661 tcttataccg agactagcca gattcctggc attacaattg caggtgcaaa tcctgaatta
      721 atcccttgca cccctgcagc cgatgctgaa tttttatact atggacaatg taaatctatt
      781 tctggggttc cagcaacccc tgatggcatc cccactccag cattgataac gcgggcagcg
      841 ttacgaagat ctcgaatacc aattttaata gttgatgcag gatcgaaaat aaaaccacaa
      901 ttgcctgcca tttcattcgg catcaagtac gggagagata taagaaacca aagggcattg
      961 gaacgggccg atgttgagag agcatttgaa tttggaaaaa tgattggaat tcaacttgct
     1021 atgtctaatg atatactaat cattggagaa agtatacctg gcggtaccac aacagcttta
     1081 gcagtattaa cggctctagg catagatgcg aaaaataaga ttagtagtag catgtcggta
     1141 aatccacacg aattaaaaaa tgaagttgtt tctactgcta tgcgtgggtt agaagatcag
     1201 attttgcaac tacgtaatga tcccatagat ttggtatcca ggataggaga tcctatgata
     1261 ccttcggtag caggaattgc aagtggtgca atatctcaaa aaacaagagt tatgcttgca
     1321 ggaggcacac aaatgacagc tgtactatgt ttgctgaaag ccatgaaaat accgctagac
     1381 gggatatgca ttggcactac atcctacgtc aaaaatgaca aatcgtccga tatcttgaag
     1441 ctagtcagat ctatctgtga taatgtacct attctgtctg ttgaattagg tttggagttc
     1501 tccgtaaaga aaggactaag aatgtataac agcggaattg caaaggaagg tgttggtgct
     1561 ggtggagctg caataacatc aattttaaaa tctaagggga atttagactc cacctcatta
     1621 ttgcattcta ttgaaattga atatgaaatt agtatcgaaa gtcaaagagt tggaagtctt
     1681 caaaatagtt aagtagcata tcatgtgttt ttgactctta atgataagtc ttttttttag
     1741 taaccaaaga aaatgaactg attttcccct taacatggcc tgatgaccta gatccaagtc
     1801 ctaaaattaa ggagtttaca atatgattcg agatattcca caattcatgt gaatctttcc
     1861 ttacaaagcc aagatcgaca aactaatgct gttgtagcct cataattacg gagaggcaac
     1921 ttgtgtccgt ctggcgacca aataatagac ttgttgaaat aaagtaaaca cga
//
LOCUS       DATLQL010000529         1127 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2262440, whole genome shotgun sequence.
ACCESSION   DATLQL010000529 DATLQL010000000
VERSION     DATLQL010000529.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1127)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1127)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1127
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2262440"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..999)
                     /gene="purK"
                     /locus_tag="VNB68_05435"
     CDS             complement(<1..999)
                     /gene="purK"
                     /locus_tag="VNB68_05435"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009320 - phosphoribosylaminoimidazole
                     carboxylase complex [Evidence IEA];
                     GO_function: GO:0034028 - 5-(carboxyamino)imidazole
                     ribonucleotide synthase activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HVD36824.1"
                     /translation="MTHNQRARLVIENPYTVGIIGGGQLGKMICQEAKRMSLDIIVLD
                     PDPCCPASRVCSKQIIADFTDEAAIKKLASRSDVITYEIELANSAALAKLKADNYTVN
                     PSPQTLYLIQNKFRQKSFLSKNKIAVPMFHLIESPAHLSELSNKYSYPLMMKACEDSY
                     DGRGNFLLTSRDRIPQALSYFNGKECMLEELLQFKKEISVMVARNRKGQIESFPVAEN
                     IHIDNILDTTIVPARISNKVAMIAMKIAKKTIAAFDGAGVFGIEMFVTVNENVLVNEI
                     SPRPHNSGHYSIEACSVSQFEQHLRAVLDFPLSRPELLSPVVMVNILGPEDYVGPYI"
BASE COUNT          324 a          238 c          201 g          364 t
ORIGIN      
        1 aatgtacgga ccgacataat cttcaggtcc tagtatgttt accatgacaa caggagacaa
       61 caattccggt cttgagagcg ggaaatcgag caccgctctc aaatgctgtt caaattgtga
      121 cactgaacat gcctcgattg aatagtgacc agagttatgc ggtcttggag aaatttcgtt
      181 gaccaacaca ttttcattta ctgtaacaaa catctcaatt ccaaataccc cagctccatc
      241 aaaagcggct atagtctttt ttgctatttt catcgcaatc atggcaactt tgttgctaat
      301 ccttgccgga acaatggtag tatctagaat attatcaatg tgaatatttt ctgctacagg
      361 aaaagactca atctgacctt tacggttcct tgctaccatg actgatatct cttttttaaa
      421 ttgtaataat tcctccaaca tgcactcttt tccattaaag taagataatg cttgcggtat
      481 cctgtccctc gatgttaaca agaagttacc ccgaccgtca taggaatctt cacatgcctt
      541 catcataagt ggataactgt acttgttaga tagctcgctc agatgagctg gtgattcgat
      601 caggtgaaac atcggaacgg ctattttatt tttgctaaga aacgactttt gtctgaattt
      661 attttgaatc aaataaagag tctggggtga aggattgaca gtataattat cggcctttaa
      721 ctttgccaat gcagccgaat ttgcaagctc tatctcgtat gtaatcacat cagatctact
      781 agcaagtttt ttaatagctg cctcgtctgt aaaatcagcg ataatctgtt tactgcagac
      841 acgcgacgca ggacagcaag ggtcgggatc aagaacaatt atatctaatg acattcgttt
      901 cgcctcttga caaatcatct taccaagctg gccccctcct atgattccta cggtataggg
      961 attttcaatt acaagtctgg ccctttgatt atgcgtcatt tttcctatca cttatctgaa
     1021 aatactggat tgtagctctg ttccgaatat gatctcaaca attcgtattt tatatctata
     1081 tatatataat attctccatt tcatgaggca ttaacataat ggtggtt
//
LOCUS       DATLQL010000530         1216 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2614993, whole genome shotgun sequence.
ACCESSION   DATLQL010000530 DATLQL010000000
VERSION     DATLQL010000530.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1216)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1216)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1216
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2614993"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..325)
                     /locus_tag="VNB68_05440"
     CDS             complement(<1..325)
                     /locus_tag="VNB68_05440"
                     /inference="COORDINATES: protein motif:HMM:NF024867.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006302 - double-strand break repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HVD36825.1"
                     /translation="MILKNITLENIRSYKDKTVIHFPYGRTLFQGDIGSGKSTILSAV
                     EFALFGLGDIDANHLLRVGATTGSVFLEFESNKQRYKVFRSLSRRRDKIIQNEGYLYE
                     NETKSS"
     gene            complement(352..1182)
                     /locus_tag="VNB68_05445"
     CDS             complement(352..1182)
                     /locus_tag="VNB68_05445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36826.1"
                     /translation="MDRDGLELEGGFKILLLHKGISELTTDKALIKDCIPLSYLPRGF
                     DYYGGGHIHKRMEGNMGESKIVYPGPIFGSTFEDLEQTAKGERRGFYIITFDKKLTGY
                     EFIEIKVAEIISRELQADGMSPSELDRTLTEAISSIDVKDKIILIKLVGSLHGRRSDI
                     DFGKFSANLHARDALVPILNINNLTTINDTGNLEVRGTTRVEIESSIFKECVSKFKTD
                     TNISLAAREKMAMLCEDSEMALKLLETFKMEKIENETAGIYDERISTLAKSVLCLTEY
                     "
BASE COUNT          331 a          277 c          208 g          400 t
ORIGIN      
        1 aagaagactt tgtctcattt tcgtacaaat acccctcatt ctgaataatt ttgtcgcgac
       61 gccgcgaaag tgaccggaat accttgtaac gctgcttatt gctctcaaac tccaggaaca
      121 cagaacccgt tgtggccccg acgcggagaa gatgattggc atctatgtca cctaatccaa
      181 ataatgcaaa ttcgactgcg gataatatgg tcgattttcc agatcctata tcaccttgga
      241 ataatgttct gccgtaggga aagtgaatta ctgttttatc cttgtaactc cgtatgttct
      301 ctaaagtaat attctttaaa atcatttgga aatcatctat ctatccatta atcaatactc
      361 agtaagacac aatactgact ttgccaaagt cgatatgcgc tcgtcgtata tgccggctgt
      421 ttcattttcg attttttcca ttttgaacgt ttcaagcaac tttaaagcca tctcgctgtc
      481 ttcacagagc attgccatct tttctctagc agcaagtgaa atatttgtgt cagtcttgaa
      541 ctttgataca cattctttga aaatggagct ctcgatttca actctagtcg tgccccgtac
      601 ttccaaattg cctgtatcat ttattgttgt caaattattg atattcaaaa tgggtactag
      661 cgcgtctctt gcatgtaaat ttgcgctgaa tttgccaaaa tctatatcag agcgtctacc
      721 atggaggctg cctacaagtt tgatcaagat tattttatcc ttaacatcta ttgaagagat
      781 tgcctccgta agggtgcggt ccagctccga aggagacatg ccgtctgctt gaagctctct
      841 tgaaataatc tctgctactt tgatttctat gaattcatat ccagttaatt tcttgtcaaa
      901 ggtgattata taaaatccac gcctctcccc ctttgccgtt tgttctaaat cttcaaaagt
      961 ggaaccaaaa atgggaccag gatatactat tttactttcg cccatatttc cttccatcct
     1021 cttatgtatg tgtcctccac cgtaataatc aaaacctcga ggaagataac taagggggat
     1081 gcaatcttta atcagcgcct tatcggtggt aagctcactg atacctttgt gaagaagcag
     1141 gatcttaaac ccgccttcta attcaagtcc gtccctatcc aagttttaat aaatctcttt
     1201 atccagtccc atcttt
//
LOCUS       DATLQL010000531         2766 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_843361, whole genome shotgun sequence.
ACCESSION   DATLQL010000531 DATLQL010000000
VERSION     DATLQL010000531.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2766)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2766)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2766
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_843361"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            734..928
                     /locus_tag="VNB68_05450"
     CDS             734..928
                     /locus_tag="VNB68_05450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36827.1"
                     /translation="MRKLSGSSSKPLPGAMDLKITDIPVRGTFSHNLDHLILPIVPEN
                     LPLYYGYVIMTIQAYAAHEA"
     gene            complement(986..2545)
                     /locus_tag="VNB68_05455"
     CDS             complement(986..2545)
                     /locus_tag="VNB68_05455"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HVD36828.1"
                     /translation="MQKEEKPATSPWITLAILSSLGVIAMSAETMVLPAIPDFIADLD
                     ISYQDSSWILAAILVTGAVMTPIAGKLSDIYGKKKVLLIIFSVYILGLLLGAIATNFL
                     SLVTARVIQGIGISMFPIAFSILRDKFPPEKLAIAQGIFSSTLSGGAVIGLIIGGSIV
                     DSFGWRATFAFMVPIAIILFAIITKFVYVKGIEQKQLISNKASEFCCRFTHVRQDILL
                     TENTSTYASSTSNDNTDSKQIVSKSIDIKGAITLSAAIISFLVTLQLLEKAGSNNLIQ
                     IITFSVASIVSLFIFIAVEKKAPFPLIDFKLLKNRIILSSNIINMTVGLTALMVVYQS
                     LPILIRSPLPVGFGGDASSIAIVQLPYMIVSLIFSVASGFVVSKFGNLRPTTLGTIIT
                     TIGFFVLFFFHSTEASIAAGLVIVAIGLALMQIGSVNVVLTSTPKQFSGISLGMNLLI
                     YLIGSSVGPVIAGIYLQTNQVFVESISASFPSPESYNLIFLTAALISVSSIAFAILLN
                     RSMSKRSGVPA"
BASE COUNT          911 a          547 c          511 g          797 t
ORIGIN      
        1 tgaaaaaaat atacttcatt ttactaaagt gagtccatct tttcaacaaa taaaatcagt
       61 aaatgatgaa caaaataata ctgggtcaac atttgtcacg cagatacctc aaggaagtaa
      121 cgatcctttc tcctgaccag atagacaaga acgtcatatt gcccatcttc atttagatac
      181 gaatccattg aaatcttggt cctctaacat ttattttatt tccacaacct gattgaccga
      241 cggaaacgct ccaatcagat tcaactcaca aatcaaaaga cagaatgata accttattct
      301 aaattaattt ttatactaca atgacaatat attatactgt tagaatttat ttccgaaaat
      361 tggttaatat cctaaaatat agccatggat gaaaagttaa cgtttgatta gtgaagaaac
      421 tatattagat gctagaagta gagacgatac catgaaacac tttgacggta ggagaagttc
      481 ttcttgaagt acatgatcag ttggttcgaa cgcccacaag gttcgcctac agaatacgag
      541 aatgcccaga agcgaatact tgaagtattc actaaatgga aggcgcccgc aaatttcaag
      601 atcgagttgt tcgtagtgcg agtgggcgaa tggggtgggc atatgttggt ggactgcgac
      661 gatccagcga ccgttcacaa ggcatgctca accttccctg cattcgaatt ccaggtgcga
      721 ccggtgattc ctgttgagga agctgtcagg gtcgagctcg aagccattac ctggcgcgat
      781 ggacttaaaa ataactgata tcccagtgag aggaacgttt tcccacaact tggatcatct
      841 tatccttcca atcgttcccg aaaatctacc tttgtactat ggatatgtca tcatgactat
      901 tcaagcatat gctgctcatg aagcatagta tttcaagaaa tattgttact cgctaatact
      961 acgatgcaaa tcacataggc attagttagg ctggaactcc actccgtttt gacatacttc
     1021 tatttagaag aattgcaaat gcgatagatg atactgaaat taaggcagcc gtaagaaaga
     1081 ttagattata cgactctgga gatgggaatg aggctgaaat actttctaca aatacctggt
     1141 ttgtttgcaa atatatgcct gcaatgacgg gtcctaccga ggatccaata aggtaaatta
     1201 gaagattcat tcccaatgat attccactga attgctttgg ggtcgaagtc aggacaacat
     1261 tcacagaacc gatctgcatt aatgccaatc caatagctac tataacaaga cccgcagcta
     1321 tcgaagcttc cgttgaatga aagaagaaaa ggacaaaaaa gcctatggta gtaatgatgg
     1381 ttcccaatgt agtgggtctt agatttccaa atttagatac tacaaaacca gaagctacag
     1441 agaatatcaa tgatacgatc atatagggca gttgaacaat tgctatactt gatgcgtccc
     1501 caccaaatcc tacaggtagt ggacttcgta tcaaaatagg aagactctga tacacaacca
     1561 tcaatgcagt tagccctacg gtcatgttaa ttatatttga agaaagtatt atcctgtttt
     1621 tcaacaactt gaaatcaatc agtggaaacg gcgccttctt ctccacggct atgaatatga
     1681 atagtgagac aatcgatgca accgaaaaag tgataatctg tatcaagtta ttagatccgg
     1741 ccttttccaa aagttgaagt gtaacaagaa aagagattat tgcagcagac agtgttatgg
     1801 cgccctttat atcaatgctc ttgcttacta tctgtttact atcggtgtta tcgttactag
     1861 tgctacttgc atatgtactt gtattctctg ttaataatat atcttgtctt acatgagtaa
     1921 acctacaaca aaactcagaa gctttatttg aaattaactg tttctgttct attcccttaa
     1981 cataaacaaa tttggttatt atggcaaaga gtattatcgc aatgggtacc atgaaagcga
     2041 atgtagcacg ccatccaaag ctatcaacta tacttccacc tattatcaaa cctattactg
     2101 caccaccaga tagtgtagaa ctaaatatac cctgagctat tgcaagcttt tctggaggga
     2161 atttgtctct tagaatacta aaggctatgg gaaacataga gattccgatg ccttgtatta
     2221 ctctagcggt aacaagagaa agaaagttag ttgctatcgc tcctaataaa agacccaaaa
     2281 tataaaccga gaaaattatt aacagtacct tctttttacc atatatatct gacagtttgc
     2341 ccgcaattgg agtcataaca gctcctgtga ccagaatcgc ggccagtatc caagatgaat
     2401 cttgatatga aatatcaaga tctgcgatga agtctggaat ggccggcagt accatagttt
     2461 cagcagacat agcaataaca cccaaactgc ttagaattgc aagggttatc catggagaag
     2521 tggctggctt ctcttctttt tgcatactca tacttttgtc gtgattttac ctcagaccta
     2581 taattaaatg gactgaaaat gcgccggctc caagaacaat aactactatt gaatgaataa
     2641 gatatcttat atcaatttca tatgaagctt tgcgggcggg gatcaatgta cactgcattc
     2701 atctttcttc cttttccatt atcacgtttg caatcataaa aataataaaa aatagtccaa
     2761 ctactg
//
LOCUS       DATLQL010000532         1448 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1906839, whole genome shotgun sequence.
ACCESSION   DATLQL010000532 DATLQL010000000
VERSION     DATLQL010000532.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1448)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1448)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1448
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1906839"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            130..>1448
                     /locus_tag="VNB68_05460"
     CDS             130..>1448
                     /locus_tag="VNB68_05460"
                     /inference="COORDINATES: protein motif:HMM:NF012492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HVD36829.1"
                     /translation="MLVAPTGSGKTEAAVIPIFSMLSHNKTSNSYKGKIRVIYVTPLR
                     ALNNDVLRRIVKYAESEGLRVEIRHGDTNTKTKRRIVENPPEILITTPESLGVILTSQ
                     KMLLALQDLEWVIIDEVHELISNERGAHMSLSLERLQSLSSKTITRIGLSATLSSLAE
                     TGKFVAGLKRKCAILVDNSIREYDIDLKFVNGPLTKVATFIADYIKKNQIAGSILLFT
                     NTRDEAEYLGAILRNRDEANVDVHHGSLSRDLREETENRLRAGSAGVVVCTSSLELGL
                     DIGSVQLVIHYGSPRQVSKLIQRIGRSRHRQAKSAKGLIVINNPDDEIEALAILRRMK
                     TRSIEEQVIHKDPLDVLAHHLVGLAIQTKSLVSLESAFKMFVKAYPFSTLCYQNMIAT
                     IELLHSQGIIRYDQIAQSYRRTIRAYKYYFDNLSTIPEVLKFEVVDI"
BASE COUNT          491 a          258 c          294 g          405 t
ORIGIN      
        1 tcctctcaaa gtgatttata gacgaatttt gatcaattaa tttttgagaa attcaaaaag
       61 catggattca catccaccac aacaattcaa accaaagcgg ttcctgtaat tgcgagaagg
      121 attaattgtc tgttagtagc tcccacaggg tcagggaaaa cagaagctgc ggtcatacct
      181 attttttcga tgctatcaca taacaagacc tcaaactctt acaaaggaaa aattcgagta
      241 atttatgtta ctcccttaag agctctcaat aatgatgtcc tacgaagaat agtgaaatat
      301 gcagaatccg aaggtcttcg tgtagaaata agacatggtg atactaatac taaaactaaa
      361 aggagaatag ttgaaaatcc tcctgaaata ttgattacaa ctccagagtc ccttggagtt
      421 attcttacaa gtcagaaaat gttactggca ttacaagatc tggagtgggt aataatagat
      481 gaggttcacg aacttatctc gaatgagcgt ggagctcata tgtcactaag tcttgaaagg
      541 ttgcaatcac tgtcgtcgaa aaccatcaca agaattggac tttctgctac attgagcagc
      601 ttagccgaaa ctggcaaatt tgttgcaggc ctaaaaagaa agtgtgcaat actagtcgat
      661 aatagcataa gagaatatga tatagatcta aaatttgtca acgggcctct aactaaagtt
      721 gctacgttta tagctgatta tataaaaaaa aatcagatcg ctggttcgat acttttgttc
      781 acaaatacta gagatgaggc agaatatttg ggtgctatat tgaggaaccg tgatgaagct
      841 aacgtggatg ttcaccacgg atccttatct agggatttgc gcgaagaaac cgaaaatagg
      901 ctgagagctg gttcggctgg agttgttgtt tgcacctctt ctctagaatt gggattggat
      961 attggctcag ttcaacttgt aatacattac ggatctccga gacaggtttc aaaattgatt
     1021 cagagaattg ggagaagcag acataggcaa gccaagtctg ccaagggttt aatcgtaata
     1081 aataatccag acgatgaaat agaagcacta gccatcttaa gaagaatgaa aacgcggtct
     1141 atagaggagc aagtaataca taaagaccct ctagatgtgc tagctcatca tctagttggt
     1201 ctggctatcc aaacgaaaag tttagtcagc ttagaatcag ccttcaaaat gttcgtaaag
     1261 gcgtacccgt ttagtacact ttgctaccaa aatatgatcg caactataga gcttcttcat
     1321 agccaaggta ttataagata tgaccaaatt gctcaatctt atcggcgaac tataagggct
     1381 tacaagtatt actttgataa cctttctacg ataccagaag ttctaaaatt tgaagttgtt
     1441 gacataat
//
LOCUS       DATLQL010000533         1511 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_843611, whole genome shotgun sequence.
ACCESSION   DATLQL010000533 DATLQL010000000
VERSION     DATLQL010000533.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1511)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1511)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1511
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_843611"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..553)
                     /locus_tag="VNB68_05465"
     CDS             complement(<1..553)
                     /locus_tag="VNB68_05465"
                     /inference="COORDINATES: protein motif:HMM:NF040245.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufD"
                     /protein_id="HVD36830.1"
                     /translation="MSKYLSLPSEVSPLYAKYSDVNRIRPEQIYLPNPVEKIVSHAKP
                     HEELQHRLNELGREDTSIVQIGSSVNQIIVPEKILNQGVIISDLRESLLKYNDLIKNW
                     LLANELQYSEDKFLALEAAAFRSGVFIYIPKNALLTDPIRIISSLADDGTSLISQNII
                     IADAGSKATVVQEIYSPLYNDRLE"
     gene            complement(732..>1511)
                     /gene="sufB"
                     /locus_tag="VNB68_05470"
     CDS             complement(732..>1511)
                     /gene="sufB"
                     /locus_tag="VNB68_05470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HVD36831.1"
                     /translation="ENIGQFERTLIIADEGSEVHYIEGCTAPVYTTESLHSAVVELIA
                     KKGAKIRYTTIQNWSKDVYNLVTKRAYAYENASVEWIDGNFGSKLTMKYPGVYMLGRN
                     AHAEVVSVAFSGSGQHQDAGAKAVHLAPNTTSRITSKSVSKDSGRTTYRGLLHVAKGA
                     TGVKSNVRCDALLLDENSRTDTYPYVEVNEEDATISHEATVGKIGEDQIFYLMSRGFS
                     ESDALSLIVGGFMEPFAKELPMEYAVELNKLVKMEMEGSVG"
BASE COUNT          406 a          312 c          276 g          517 t
ORIGIN      
        1 tctccagcct atcgttatat agtggggagt agatctcttg gactacagtt gctttagagc
       61 cagcgtcagc aatgattata ttctgtgata ttaaagaggt tccgtcgtct gctagcgagc
      121 ttatgattcg aatgggatca gtgagtaatg cattttttgg aatgtaaata aatactccgg
      181 atctaaaggc agctgcctct aatgcaagga acttatcctc actatattgt agctcattgg
      241 cgagtagcca attttttata aggtcattgt atttcaatag tgattctctt agatcagaaa
      301 tgattactcc ctgattcaat attttttcgg gaacgataat ttgattaacc gacgagccaa
      361 tttggactat gctagtatcc tcacgcccta attcatttag cctgtgttga agctcttcgt
      421 ggggtttggc atgtgagaca atcttttcga caggattggg aagataaatc tgctcgggtc
      481 ggatacgatt tacatcagag tattttgcgt atagtggaga cacttctgaa ggaagagata
      541 aatatttgga caatgccttt tgtcgtaatg ctgcaagcca cttaggatcc ttattttctt
      601 tgattataga ttcaatatag ttatctgaaa tagaggataa acttatcaga gtctaaacac
      661 ttctcttctt aaaaaaattc aaaggaatat aaaatgatcc cttttttgta gttggatgtt
      721 ttctctagcg tctatcctac tgatccttcc atttccattt ttacaagttt gttcaattct
      781 actgcgtatt ccatcggtaa ttcctttgca aagggctcca taaaccctcc aactatcaaa
      841 gatagtgcat cagattcgga aaatcctcta ctcatcagat aaaagatttg gtcctctcct
      901 attttcccta cagttgcttc gtgagagata gtggcgtctt cttcatttac ctctacgtat
      961 ggatatgtgt cagtccttga gttttcatct aatagtagcg catcacatct aacatttgac
     1021 tttacacctg tagccccctt tgcaacatga agcaatcctc tatatgttgt tctacccgaa
     1081 tccttactaa ctgatttgct tgtaatccgc gaagttgtat ttggtgcaag atgtactgcc
     1141 ttggcccctg catcttgatg ttgaccagag ccagaaaatg caaccgatac aacctctgcg
     1201 tgagcattcc ttcccagcat ataaacacca gggtatttca tagttagttt gcttccaaaa
     1261 tttccatcaa tccattcaac tgaagcattc tcatacgcat atgctctctt cgttactaaa
     1321 ttgtacacat ctttgctcca attttggatc gtggtatatc tgatcttggc acctttcttt
     1381 gcgattaatt caacaactgc agaatgtagt gattcagttg tatagactgg tgcagtacat
     1441 ccttcgatat agtgaacttc agaaccctca tcggcaatta ttaatgttct ttcaaattgg
     1501 ccgatatttt c
//
LOCUS       DATLQL010000534         2289 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1906966, whole genome shotgun sequence.
ACCESSION   DATLQL010000534 DATLQL010000000
VERSION     DATLQL010000534.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2289)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2289)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2289
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1906966"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(183..>2289)
                     /locus_tag="VNB68_05475"
     CDS             complement(183..>2289)
                     /locus_tag="VNB68_05475"
                     /inference="COORDINATES: protein motif:HMM:NF017964.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="amylo-alpha-1,6-glucosidase"
                     /protein_id="HVD36832.1"
                     /translation="WTWMGAKYDNGGLYVPPARAFGRIIVEVSVDDGVRKRLPNFVVA
                     SKHEGGILYTRHEVAGIEVKRTLFVPINSKGFIMKLEFHFDKISGDLVGLIPDNKLYS
                     KRKIRVHFLIDGNITSYGLAAISQSNVSKYYKSENCLQIRTFAKKDVAHYFGTIGVAP
                     KSMKPFRILTDSFDNDLELSYDLDLEEGLTKEIALVGVGSFTSPRDCLNEFKFMRENY
                     TKLFDDTRNHYVQFSENTLKVSSTSNSDLLIIKLIKAFEKAKNSLEYLKADYDKLGPG
                     ISAGLPRFPNYWARDTGWSLRGYLSLGEFDFAFQVIENFLKHQAKSNSKQALKGELPM
                     IISGKYFLHNTTYGSADSTFLFPWAIKQYVYGTGDVAYLKRRWKTITDLINWGFLKDV
                     DKDGLVEHGFSGTAEKLPIQDSTWMDHIDRRKNANDVQGLFYESLMSGSELAGIVGDL
                     VSKKKWDKAAYKLKSKIDKEYWEPKIGYYYDTIRRDGSKDDSIRPNPLIFVLTGAVSE
                     TEKIRSVLNRVEGEDVTTSWGIRTLSSLDPKYHPSLYHDGAVWPLVTGWAAISEIMSS
                     RTEKAVQYLSSMADRILSENGMFAETYRGDRPEPFNSCILQAWSVAMYVYAFRELMVG
                     SKMNMIDNKVEINPQIPESLRSSSMEITFEQYFHTQNGKKKIKIGIQPDRQRIVVNRI
                     EGSGIMPDFLSGSYSVSTE"
BASE COUNT          658 a          516 c          378 g          737 t
ORIGIN      
        1 agaaatctca tgaacaatac gacaactcac aggtcatgat tacgaaaatg tgtaaagacc
       61 ctcccttgat cgtcgatact atcttcgagt ctcactttag tgaatcgatc atgatttaat
      121 atataaatga ggataaaaga atctacagta atatatcgag ttagttttca gatagttcgt
      181 aactactctg tgctaacgga ataggaacca ctcaaaaaat ctggcatgat cccagagccc
      241 tcaattcgat ttaccactat tctttgtctg tcgggttgaa ttcctatctt aattttcttc
      301 ttgccatttt gagtatggaa gtattgctca aaagttatct ccatagagct tgacctaagt
      361 gattccggaa tttgcggatt tatctccacc ttattgtcaa tcatattcat tttgctccct
      421 accattagtt cacgaaaagc gtacacgtac attgccacgg accaggcctg aagtatgcaa
      481 gaattgaacg gttccggcct atccccacgg tacgtttcag caaacattcc attttcagaa
      541 agaattcggt ctgccatgga agagagatat tgaacagctt tttcggttct tgaagacatg
      601 atttcgctaa tggccgccca tcctgtaaca agcggccaaa cagctccatc gtggtataaa
      661 gaaggatggt atttaggatc aagggagctt aatgttctaa ttccccaaga tgtggtcacg
      721 tcttctcctt cgactcggtt taaaactgat ctaatttttt cagtttcaga tacagctcct
      781 gtcagaacga atatcaacgg atttggccga atactgtcat ccttagatcc gtctcttctt
      841 atggtatcgt agtaataccc aatttttggt tcccaatatt ccttatctat ttttgacttt
      901 aatttatatg ccgctttatc ccacttcttt ttactcacta gatcaccgac aattcccgct
      961 aactcgcttc ctgacatcaa actttcatag aacaaacctt ggacatcatt cgcattcttt
     1021 cttctgtcga tatgatccat ccatgtggaa tcttggattg gcagtttttc agctgttcca
     1081 gaaaaaccgt gttccaccag tccgtcttta tcaacatcct tcaaaaatcc ccagtttata
     1141 agatccgtaa ttgtcttcca tcttcgtttt aggtatgcca catctcctgt tccataaacg
     1201 tattgcttta ttgcccaagg aaacaagaaa gtggaatctg cggatccgta tgtcgtatta
     1261 tgaagaaaat attttccact tattatcata ggaagttctc cttttagggc ttgcttagaa
     1321 ttagattttg cttgatgttt caaaaaattt tcaataactt ggaaggcaaa atcaaattca
     1381 cccagggaca aatatcctct taatgaccat cccgtatctc ttgcccaata gtttggaaat
     1441 cgaggtaaac ctgcactaat cccaggtcca agtttatcat agtcagcttt caaatattct
     1501 agactattct ttgctttctc gaacgcctta atcagcttaa ttatcaggag atctgaattg
     1561 gaagtactac taaccttcag agtattttct gaaaattgaa cataatggtt cctcgtatcg
     1621 tcaaaaagtt tcgtatagtt ttcgcgcata aatttaaatt catttaaaca atctcgtgga
     1681 ctggtaaaac tacccacacc gactagtgca atttcctttg tcagcccttc ttcgaggtcc
     1741 agatcatacg ataactctag atcgttatca aaagaatctg taagaattcg aaacggtttc
     1801 atggatttgg gagctacccc gatagttcca aaataatgcg ccacatcctt cttcgcgaat
     1861 gtcctaattt gtaagcaatt ctcagattta taatactttg aaacattact ctgagagatc
     1921 gccgctagtc cgtaactcgt tatattcccg tcgatcaaaa aatgaacgcg tatcttccgt
     1981 ttggaataca atttattatc cggaataaga cctaccaagt cgccgctaat cttatcaaaa
     2041 tggaattcaa gtttcatgat aaatccttta ctgtttatcg gtacgaacaa agttctctta
     2101 acttctattc cagctacttc atggcgtgta tagagaatgc ccccttcatg ttttgatgca
     2161 actacaaagt tgggcaatct tttacgaaca ccatcatcaa ctgacacttc tacaattatt
     2221 ctaccgaagg ctctagcggg aggtacgtaa agacccccat tgtcatattt agctcccatc
     2281 catgtccaa
//
LOCUS       DATLQL010000535         1232 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1907055, whole genome shotgun sequence.
ACCESSION   DATLQL010000535 DATLQL010000000
VERSION     DATLQL010000535.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1232)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1232)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1232
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1907055"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(396..1046)
                     /locus_tag="VNB68_05480"
     CDS             complement(396..1046)
                     /locus_tag="VNB68_05480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HVD36833.1"
                     /translation="MNEKNQLGFIHKFIPSNKKERLEGRVKVPTFLLLHGTGGNEEDL
                     IPIGHEIASEAAILSPRGKVLEDGMPRFFRRLAEGVFDIEDLKFRTNELADFVKAAST
                     AYGFDMQHIIAVGYSNGANIASSMLLLRSEILSAAILFRAMVPLVPEVLPNLTDKRIF
                     MSSGLHDPIVPKREVESLSSLFKKVGAKVSLYWQNSGHELRIEEVKKAKAWLNSSF"
BASE COUNT          370 a          242 c          234 g          386 t
ORIGIN      
        1 gattttcgat gccgcgtggt aggctaataa tatccgtgat tataatctta ggttggatga
       61 tttgtgataa gagaagttcc ggaagtcgag gtttgaaaag atgtatcata tgaatatatg
      121 actgaggtca gctatctaac attttcctta taactttgta tagtgctagc agatcaggca
      181 gcgttgctat ttcataatag gtaaaataat gttgaatgga atggaccttt cttatatgca
      241 ttgagactac catgagggat caaaaaaagg cagtagtata tacatacagc tcaataagga
      301 taacatcgat aagagattta catcaagtat aatgagccac cacctgcgtt gaaccagttc
      361 atgggtcttg tccgcaaata gatattattt gacaatcaaa aagaagaatt tagccatgcc
      421 tttgctttct taacctcctc tattcttaat tcatggccac tgttttgcca atataatgat
      481 actttggcac ccactttttt aaataaactg gaaagactct ctacctctcg ctttggaacg
      541 attggatcat gtagtccaga ggacatgaaa atacgtttgt ctgtaagatt tggcaatacc
      601 tccggaacaa gtggaaccat agcacgaaaa aggatagcag cagaaagtat ctctgaacga
      661 agtaacagca tactggatgc tatgtttgca ccgttagaat agcctacagc tattatatgt
      721 tgcatatcaa aaccataagc cgttgaggca gctttcacaa aatctgccaa ttcatttgta
      781 cgaaatttta gatcttctat atcgaaaaca ccttcagcta gccgtcgaaa aaatctaggc
      841 attccgtcct ccaagacctt accgcgagga ctaagtatag cagcttctga agctatctca
      901 tgcccgattg gaatcagatc ttcctcattt cctccagtgc catgaagcaa aagaaaagtt
      961 ggtaccttta ctctgccttc tagtctttct tttttattcg aagggataaa cttgtgtata
     1021 aatccaagtt ggtttttctc gttcaattct ctttctttta attctcctgt cccttaagaa
     1081 agtcatgacc ccttagtagt attttgtatt tcattcttct taggaattcg tacagagggc
     1141 agaattttta gtaggtcttt gcgcataggt tcaagccaag gaggaagcac aagatgcgtc
     1201 cctagttcgt cggctttttc atctaccata aa
//
LOCUS       DATLQL010000536         1020 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_489628, whole genome shotgun sequence.
ACCESSION   DATLQL010000536 DATLQL010000000
VERSION     DATLQL010000536.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1020)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1020)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1020
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_489628"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..138)
                     /locus_tag="VNB68_05485"
     CDS             complement(<1..138)
                     /locus_tag="VNB68_05485"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HVD36834.1"
                     /translation="MEKQALESSLKVSNKVALITGSGTGIGQSIAKRFAENGANIIIM
                     GR"
     gene            526..>1020
                     /locus_tag="VNB68_05490"
     CDS             526..>1020
                     /locus_tag="VNB68_05490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36835.1"
                     /translation="MAKQVGPSEAKFKINIKEGIVEIEGNDMFVERHLEKFEEICKTA
                     IQDVVKRRIDNVRNTDGIFFPRQNVQQREFTTLTTSHSMKTSNKHGNRQQASLSPLPV
                     DLKGNDNKIGLREFYDQKRPVSHYEKTAVFVYFLTKFNKHFEVKLGEILSCYEEVGEK
                     KPSII"
BASE COUNT          344 a          191 c          204 g          281 t
ORIGIN      
        1 ccttcccatg ataataatat tcgcaccatt ttcagcaaac cttttagcga tcgactgccc
       61 aatgcccgtg ccactaccag taattagagc aaccttgtta gaaactttta aagatgattc
      121 aagagcttgc ttttccatga catatgaaga tttcgtgcgt tattaaagtt aacttttgag
      181 ccaaccgaaa caacccaaat cataatgtat gttttagtaa gactacgttt tattattttt
      241 ctagaacatg cctttgtgaa tttggataac attcagcccg accgccgacc tggttgctcg
      301 atctttaaag aattttgcac ccaagttgca tcgcatgatt agggtcactt cgtcgtatca
      361 aagacaagcc tattgtagcc tatagacaac acaaacctat tgtagaatta aaattcgttt
      421 aaacgttgtt tatcgcttca cgcgatccta ttcagtcagc aattacaaaa cgtggcgctc
      481 attcaaatac ggtattgtac cgacaagtta attagagtct gcagtgtggc taaacaggtg
      541 ggcccctctg aagcgaagtt caagataaat attaaggaag gtatcgtgga gattgaaggc
      601 aacgatatgt ttgttgagag gcacctggag aaattcgaag aaatatgcaa gactgcgatt
      661 caagatgtcg taaaaaggag gattgataat gtgagaaata ctgatggaat attttttccc
      721 agacaaaatg ttcagcaacg agaatttacg acactaacca catcacattc aatgaagacg
      781 agcaataaac atggaaacag gcagcaagca agtcttagtc ctttaccagt agacttaaaa
      841 ggaaacgaca ataaaatcgg gttgagggaa ttttacgacc aaaagagacc agttagccac
      901 tatgaaaaaa cggcagtgtt tgtttatttt ctgacaaaat ttaacaagca ttttgaggta
      961 aagctggggg agatactctc atgttacgaa gaagtaggtg aaaagaaacc aagcattatt
//
LOCUS       DATLQL010000537         2430 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_490240, whole genome shotgun sequence.
ACCESSION   DATLQL010000537 DATLQL010000000
VERSION     DATLQL010000537.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2430)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2430)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2430
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_490240"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..496
                     /locus_tag="VNB68_05495"
     CDS             <1..496
                     /locus_tag="VNB68_05495"
                     /inference="COORDINATES: protein motif:HMM:NF015325.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HVD36836.1"
                     /translation="ACIFPCSISEIDKEDQMLEIYEKVILWSDVVIVSTPIRWGNASS
                     LYYQMIQRMNCVQNQSVTHNQYRIRDKAAAFIITGGQDNIQHVAGEMLSFWSQLGFVF
                     GKFPFVGWSRGWYAEDMENNYDDMMSANESPMKKDIIRTVMGAVEMANLVKKNKYDEH
                     VLTL"
     gene            988..1770
                     /locus_tag="VNB68_05500"
     CDS             988..1770
                     /locus_tag="VNB68_05500"
                     /inference="COORDINATES: protein motif:HMM:NF013488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HVD36837.1"
                     /translation="MALTILTTLIYVQMGSLNRLESNHLVTAAETGTETAEEQAHEEN
                     PNVQDGFSPAGHPPNITQVANNSVIPNEFALSSLVAQGSPVFGDQSAAVTIIEFGDLQ
                     CHFCGRFAMQTEPSLNSTYFQTGKANLVFKHFVTHGPDSFSSAMASQCANDQGKFWNF
                     YETLYNNQGEENSGWASANNMKKFAAGIPGMDTQKFDSCLDSQKYKSLVENDTNLAFG
                     SGFQGTPTFIIQKNNGSDREVLLGAHPFPSFQAIIDKKISGD"
     gene            1779..2318
                     /locus_tag="VNB68_05505"
     CDS             1779..2318
                     /locus_tag="VNB68_05505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36838.1"
                     /translation="MTNKKTMPITTSWQDSLILSFRTVFSNWSYLLITGGTATVFWIV
                     FNVFDQLLFFSPIVIFYLPDDAVIGFILATLTAILLGIVVSMNVYVFRHSKLKIGLAA
                     FFSGSTVSVLSSTCASCSSLGFLLVSVFGGTGVAASSFLSNYQTPLRIISIALLTWAL
                     FSISNKLTSSCVIKYDSSK"
BASE COUNT          737 a          445 c          487 g          761 t
ORIGIN      
        1 agcttgcatt tttccttgtt caatttctga aattgataag gaggaccaga tgttagagat
       61 ttacgaaaag gtgatactat ggtcagacgt agtgatagtt tctacaccaa tcagatgggg
      121 aaatgccagt tcattgtatt atcaaatgat tcaaaggatg aattgtgtgc agaatcaatc
      181 ggttactcat aatcaatatc gtatcagaga taaagccgct gcgtttataa ttactggggg
      241 acaggacaat attcaacatg ttgccggtga gatgttgtcg ttttggtccc agttaggatt
      301 tgttttcggt aaatttccat ttgtggggtg gagcagaggg tggtatgccg aagatatgga
      361 gaataactat gacgacatga tgagtgctaa cgagtcgccc atgaaaaaag atatcatacg
      421 gaccgttatg ggagcagtag agatggccaa ccttgttaag aaaaacaagt acgacgaaca
      481 tgttctaacg ctctagaaca aacattatat ctctaagcta gaccatcata catcgttagg
      541 gaagaacaat aggtcaatcc atgggactaa attgatggga agactattct ggtctactta
      601 ttttgagagg tcttctgctt tgagactagt tccacaccta cgacaagaat atgttcttac
      661 actttcctgt gtttcggaga caattactgt attgggactc agttccgttt cacaatttgg
      721 acatttggct gacacagttt aattttgttc cgcggagaaa atttaaactt atgttttaga
      781 attgacaata tgtctatttc ttacaaactg gtagaggggg cttcaagtac aaattcacac
      841 cagaactgcg tacatttgac atatatgtac agatatcttc ttcccggtat aaaactagga
      901 ttataactta gttattacac tcttcttata cttggaattg ttaactcact actaatgtcc
      961 aatagattga agggtttcta tactgttatg gcattaacca tacttactac tttaatttat
     1021 gttcagatgg gttcgttgaa caggttagaa tcaaatcatc tagtaactgc agccgaaaca
     1081 ggaactgaaa ccgctgaaga acaagcacat gaagaaaatc ccaatgtgca ggatggcttt
     1141 tctccagctg gccatcctcc gaatataaca caagtagcaa acaactctgt catacccaat
     1201 gagtttgctc tctcgagtct agtagctcaa ggctcgcccg tttttggaga tcagtctgca
     1261 gccgttacaa taatagaatt cggagatttg caatgtcact tctgtgggag atttgcaatg
     1321 caaactgagc cctcgcttaa ttcgacatac tttcagacag ggaaagcaaa tttggtcttt
     1381 aaacattttg tgacacacgg tcctgactca tttagctctg cgatggcctc gcaatgtgcc
     1441 aatgaccaag gaaagttttg gaacttttat gagacattgt acaataatca aggagaagag
     1501 aattctggct gggcaagtgc aaataatatg aagaaattcg ctgcaggaat tcctgggatg
     1561 gatacccaaa aatttgattc ctgcctcgac agccaaaaat acaaatcatt ggtggaaaat
     1621 gatactaacc ttgcgtttgg atcaggtttc caaggcactc cgactttcat aatccaaaag
     1681 aataatggtt cagaccgaga agtgttacta ggtgctcatc cattcccatc atttcaggca
     1741 ataattgata agaagatttc tggagattaa gctggtgtat gacaaacaaa aaaactatgc
     1801 ctataacaac ttcttggcaa gattcactaa ttctatcctt tagaacggtc ttttcaaatt
     1861 ggtcatattt gttaataaca gggggaacgg caacagtatt ctggattgtc tttaatgtat
     1921 ttgaccaatt gctattcttt tcgcctattg taatatttta tctaccagat gatgcagtaa
     1981 taggcttcat tcttgcaaca ttgaccgcaa ttcttttggg aatagtagtc agcatgaatg
     2041 tatatgtgtt tagacattca aaactgaaga taggacttgc cgcttttttc tctggctcaa
     2101 ctgtaagtgt gctttcaagt acatgtgcca gttgttcctc attaggattc cttcttgttt
     2161 ccgtctttgg aggaacaggt gttgctgcat cgagtttttt gtctaattat cagacgcctt
     2221 tacgtatcat ttcaattgca cttctgacat gggcattatt ctcaatatct aacaagttaa
     2281 ccagtagctg cgttatcaaa tatgactctt caaaataacc aattcatttg tggaaattga
     2341 aggatgtcct tagaacgtta ctcaaagaca atagtccata atcattcaat aaatttgaaa
     2401 tgtcacttga tttgtatgta ttagattatt
//
LOCUS       DATLQL010000538         1097 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2265027, whole genome shotgun sequence.
ACCESSION   DATLQL010000538 DATLQL010000000
VERSION     DATLQL010000538.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1097)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1097)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1097
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2265027"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            77..907
                     /gene="trpA"
                     /locus_tag="VNB68_05510"
     CDS             77..907
                     /gene="trpA"
                     /locus_tag="VNB68_05510"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HVD36839.1"
                     /translation="MSFEENNRINKKFTDLKSRGESALICYVVGGYPDFSHSEKIISA
                     LVSGGADIIEIGIPFSDPIADGPTIQDASFKALTKGMTPHKCLLLTSKIRKKFPNLPI
                     LAMTYSNIPFKKGFKEFMCRAKITGIDGFILPDMSIEESEDYVKFAKELGLATVFLVS
                     PNTTRDRIKKIIKHSSGFVYVVSVFGTTGVRSSFAKYSITSIRNIKTIAGPTRNVAVG
                     FGISTSLHVKQMIDAGADAVIVGSAIIEKIKLDIYSDNMEIKLKLYATTMKRPCRKSH
                     "
BASE COUNT          381 a          201 c          221 g          294 t
ORIGIN      
        1 actctttcag gaaggggaga caaggatatc gaagaggtaa tgagatttac taaattcaag
       61 aggtagaaca taaaaaatgt ctttcgaaga aaataatcga ataaacaaaa aatttactga
      121 cctaaagtca aggggagaaa gtgcactcat ttgttatgtg gtgggtggat atcctgattt
      181 tagccacagt gaaaaaataa tatctgcatt ggtaagcggg ggcgcagaca tcatagaaat
      241 aggaattcca ttttcagatc caattgcaga tggacccaca attcaagatg cgtcatttaa
      301 agccttgaca aaagggatga ccccacataa atgccttcta cttacatcga agatacggaa
      361 aaaatttcct aacctcccta tcctcgcaat gacttactcg aatattccat tcaagaaagg
      421 ctttaaggaa ttcatgtgcc gtgcgaaaat cacagggata gacggtttca tactcccaga
      481 tatgtcaatc gaggaatccg aggattacgt aaaatttgca aaagaacttg gcttagcaac
      541 agtatttctt gtgtctccaa ataccacacg agataggata aaaaaaatca ttaagcattc
      601 ttcaggcttt gtgtatgtcg tttcggtttt tggaacaaca ggggtaagga gttcgtttgc
      661 gaaatattct attacctcga tcaggaacat aaagaccatt gcgggtccca caaggaacgt
      721 ggcagtagga tttgggatca gcacttcgtt gcacgtgaaa cagatgatag acgctggcgc
      781 agacgcagtc attgttggaa gcgctattat agagaaaatt aagctggata tatacagtga
      841 taatatggaa ataaagttaa aattgtacgc aacaaccatg aaaagaccat gcagaaaatc
      901 tcattgaatg attttaaata atccacctgt tttgaatcaa gaccgaaatg atccaaccaa
      961 ttctacaatc atcaccaaaa tacgatgcct gattgatcat ttgcaaatag catgttgttg
     1021 atactgactt gaaaccttct tccccatgtc tccacgataa cttctatgtt atcaagtgat
     1081 tcagaagttt gagaatt
//
LOCUS       DATLQL010000539         1387 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1729587, whole genome shotgun sequence.
ACCESSION   DATLQL010000539 DATLQL010000000
VERSION     DATLQL010000539.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1387)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1387)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1387
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1729587"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(231..1208)
                     /locus_tag="VNB68_05515"
     CDS             complement(231..1208)
                     /locus_tag="VNB68_05515"
                     /inference="COORDINATES: protein motif:HMM:NF013324.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005743 - mitochondrial inner membrane
                     [Evidence IEA];
                     GO_component: GO:0035632 - mitochondrial prohibitin
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prohibitin family protein"
                     /protein_id="HVD36840.1"
                     /translation="MRNPFKRQGNPYGRRTPEGEPLEGHPRSFLSNKLKILAGIVTFI
                     VIVIVMAESVVIVQAGHRGVVLYLGAVENRVLGEGVHFIVPFAEQVIQLEVRTLKFQA
                     ESSAASNDLQEVQTVIALNYHIDPNDANVIYQQLGENYADRIIAPTIQESVKASVAKF
                     NAEELITKRETAKGVIANTIRNTLSARNIIVETVFITDFKFSQSFADQIEAKVVAFQK
                     FLTEQNNLKAIQVVANQTVVQAQAQARANVAKAGGESQAIKIITEQLRQSPQYLQWQA
                     INRWNGQMPYALGSSGFPFFQLPTIPQSSQPQQQQQQQQQPLLQQNQTR"
BASE COUNT          372 a          255 c          276 g          484 t
ORIGIN      
        1 cgattgcggt ctgaaactcc aatgcttcta atggcatctc aaatgctagt tgtccattat
       61 catccgaaag ccaatagaaa atcaagagct attgagccga ttagacagaa tattaaatag
      121 ctgatgagct gctagcggtt agaaaaatgg atttatctct tttgaactat gcacaatatc
      181 aaaaaacttc tgtttctggt agcgttgcaa gggagggaag ttgtttgcaa ttatcttgtt
      241 tgattttgct gcagcagcgg ctgttgctgt tgttgttgtt gctgttgtgg ttgtgatgac
      301 tggggtattg ttggcagctg gaaaaaagga aatccactac taccaagagc atagggcatt
      361 tgaccgttcc atctattgat agcctgccat tgcaagtatt gtgggctttg tcttagttgc
      421 tcagtaataa ttttgattgc ttgtgattca ccaccagctt tagctacatt tgctcttgct
      481 tgtgcttgag cttgtacaac tgtttggttt gcgactactt ggatggcctt tagattattc
      541 tgctctgtca gaaacttttg gaatgctact acttttgctt cgatctgatc agcaaatgac
      601 tgtgagaatt taaagtcagt tataaatacc gtttcaacga ttatatttct ggctgataaa
      661 gtattacgaa tagtattggc tataacacct ttagctgttt ctctcttagt tatgagctcc
      721 tctgcattaa attttgcaac acttgcttta actgattctt gtatagtagg agctattatt
      781 ctatctgcat aattttctcc aagttgctga tatattacgt ttgcatcatt tggatcaata
      841 tgatagttta aagctataac agtttgtacc tcctgtaggt cattagatgc agctgatgat
      901 tcggcttgaa acttgagtgt acgtacttct aattgtatta cttgttcggc aaatggaaca
      961 atgaagtgta ctccttctcc aaggacgcga ttttcgactg cacctaaata aagaactaca
     1021 cccctatgtc ctgcttggac tataactact gattcagcca ttactatgac tataactata
     1081 aacgtcacta tgcctgcaag gatctttaat ttattagata gaaatgacct tggatgtcct
     1141 tcaagtggct ctccctctgg cgttctccta ccatacgggt taccctgtct tttgaaggga
     1201 tttctcataa aaccagcttc tcgatgatat attagtattg aaaggcaatt taaattgttg
     1261 taaacgagta tatgtaaaac tagtaatatt agtgagtgat tctttagcta ggcatagcat
     1321 tagtccccct actccgtttc attattataa tcatgccctt tgaagagggt gcaaagaagt
     1381 gacagtt
//
LOCUS       DATLQL010000540         1061 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_490592, whole genome shotgun sequence.
ACCESSION   DATLQL010000540 DATLQL010000000
VERSION     DATLQL010000540.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1061)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1061)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1061
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_490592"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1061)
                     /locus_tag="VNB68_05520"
     CDS             complement(<1..>1061)
                     /locus_tag="VNB68_05520"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004748 - ribonucleoside-diphosphate
                     reductase activity, thioredoxin disulfide as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobalamin-dependent
                     ribonucleoside-diphosphate reductase"
                     /protein_id="HVD36841.1"
                     /translation="YNPSIIAKGGPLRATNPCGEQSLYPYESCNLGSINLANFVKRRA
                     DGSFEFDWQRYEQAIRLSTRFLDNVIDMNNYPVEEIDINSKLTRRIGLGIMGMADLLF
                     LLRISYNSRDGYEFMNKLAEAISYYSMEESVAVAKSRGSFPLFSETDYVRGKIPIAGY
                     YELPKEKHAFDWDSLIGKIQKYGIRNSWTSTIAPTGTLSMIADTSNGVEPMFAVVFEK
                     RVTVGRFFYTNKIFESTLKENGLYNDDILTKIANNYGSVRGLSEIPEWIQKIFVTAID
                     VHWTDHIMAQAVWQKWISNAIAKTINMPGDTTAEDVKSAYLLSHELGLKGVTVYRDGS
                     RHEQVLHINGNDTKERKFIV"
BASE COUNT          308 a          237 c          171 g          345 t
ORIGIN      
        1 acgatgaatt tcctttcctt tgtatcatta ccattaatat gaagaacttg ttcatgacga
       61 gaaccatctc tgtataccgt cacaccttta agaccaagtt cgtgcgataa caaatatgcg
      121 gattttacat cttctgcagt agtgtcacct ggcatattaa ttgtcttcgc aatcgcatta
      181 cttatccact tttgccacac tgcttgagcc attatatgat cggtccaatg tacatctatt
      241 gcagtaacaa atatcttctg aatccattct gggatttcgc tcagacctcg taccgaacca
      301 tagttatttg caatcttggt cagaatgtcg tcattatata atccattttc cttcagagta
      361 ctctcaaaaa tcttattggt atagaaaaat cttcctactg taacacgttt ctcaaatact
      421 accgcaaaca ttggttcgac accgttagag gtatcagcta tcattgatag agtacctgta
      481 ggggcaattg tcgatgtcca agaatttcta atcccatact tttggatctt tccaattagt
      541 gaatcccaat caaatgcatg tttttccttc ggtagctcat agtatcctgc gatgggaatt
      601 ttacctctaa cataatcagt ctcactaaat agagggaatg aacctcttga ttttgcaaca
      661 gcaacacttt cttccatact gtaataggat attgcctctg ctaatttatt cataaattca
      721 taaccgtccc ttgagttata ggatatcctc aataagaata gtaaatctgc catccccata
      781 ataccaaggc cgatccttct tgtcagtttt gaattaatat caatctcttc cacagggtaa
      841 ttgttcatat caattacatt atccaagaaa cgagttgata gtcgaattgc ctgttcatac
      901 ctttgccagt caaattcaaa agacccgtca gctctacgct ttacaaaatt tgcaagatta
      961 atcgatccta gattacagga ttcgtagggg taaagcgatt gttcaccaca ggggttcgtt
     1021 gcccgaagcg gaccaccctt tgcaatgatt gacggattat a
//
LOCUS       DATLQL010000541         2116 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_132125, whole genome shotgun sequence.
ACCESSION   DATLQL010000541 DATLQL010000000
VERSION     DATLQL010000541.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2116)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2116)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2116
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_132125"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(275..466)
                     /locus_tag="VNB68_05525"
     CDS             complement(275..466)
                     /locus_tag="VNB68_05525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36842.1"
                     /translation="MKWAEGEALQSLRRREGLLKEGALNAQRLLGSTSADRWATKFMN
                     VLDVCPSFISTNCSQRLEN"
     gene            797..1684
                     /locus_tag="VNB68_05530"
     CDS             797..1684
                     /locus_tag="VNB68_05530"
                     /EC_number="2.5.1.141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008495 - protoheme IX farnesyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0048034 - heme O biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme o synthase"
                     /protein_id="HVD36843.1"
                     /translation="MNVADYIEVSKPRIVIVLVITAITSALAATRFDSTPYLPWDVPL
                     FKLLSLGVAGALASMGSSALNHYYDRDIDAKMPRTAKRPIPSGRVRARNVFAYGVSLC
                     ALSLILSLFTLNLVTTGMIGLGIFFYVIIYTSWLKRNNVSNIVIGGFAGSAASMAGWS
                     VATGSVDTLGFLVGWLVFMWTPPHFWCLAMKTREEYESVNVPMLPVLVGNKKTSQYIL
                     TSTAILLPYSISLYFLGLGLVYLTVAIIAGSLMLFYHYKLTKCPTPSFAWKAYKVTAP
                     YLVIIFIALAFDALFYYRL"
     gene            complement(1893..>2116)
                     /locus_tag="VNB68_05535"
     CDS             complement(1893..>2116)
                     /locus_tag="VNB68_05535"
                     /inference="COORDINATES: protein motif:HMM:NF012939.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="elongation factor 1-beta"
                     /protein_id="HVD36844.1"
                     /translation="SVAERLSTSIPVGMKLLSHVTEPIAFGLNSLIADFTLDDSEGQM
                     DLLEESIKKDKGVGEIEVINVSRQSVRIN"
BASE COUNT          611 a          410 c          400 g          695 t
ORIGIN      
        1 ttcataatat ttggttaagg tttgcatctt taaaaagaga tgtgatttca aaacccgctg
       61 ttttcactaa tatgtcgtag gcgtctatct cgtaagcgtc gtgtgatcat caatatgagt
      121 tttgaatgtt actataattt aataaaataa aaatagcatt gatccagttt taactgaatg
      181 ttatctgctc gcaatgatag aagagtgatg atgtataaca cacgagatta tacttgaagt
      241 aatggcagtg catgagccat gaatttgacg attgtcaatt ttcaagtctc tgactacaat
      301 tcgtcgatat gaaacttgga catacatcca gtacattcat aaatttcgtc gcccacctgt
      361 ccgccgacgt tgaacctaac aatcgttgtg catttagggc accttccttc aacagtcctt
      421 ctcttcttct gaggctttgc agcgcttctc cttctgccca tttcataaag aaagccattc
      481 accgttttat aaaccacatg aattctaatc acgtctgtag caaagcccgc attttattat
      541 cgaagataaa cactagttcg gaaacaagca gatgtaataa ggaatcaatt atagtccatc
      601 ctgttcttga actgaaaatt catactgatt atttgcttta acttcaatct ctgcgagtta
      661 agtggaaata gcaggaatta agaatatacg ggattagaat cgaattacat tagtaaactt
      721 gccagccttg ccttttgagc ctattcggaa tattatcgaa taaattaaat gctagacacg
      781 gatcatcact tcggctgtga atgtagcaga ctatattgaa gtttcaaaac ccagaatcgt
      841 gatcgttcta gttatcacag ctattactag cgctctcgct gctactagat ttgactccac
      901 accctacctg ccatgggatg tgcctctatt taagctccta tcattaggag tagccggagc
      961 gcttgcatca atgggatcta gcgccttgaa tcattattac gatcgagata ttgatgccaa
     1021 aatgccaaga actgcaaaaa gacccattcc ttcaggaaga gttcgagcga ggaatgtgtt
     1081 tgcctatggt gtgtcactct gtgccttgtc cttgattttg tcattattca cattgaatct
     1141 tgttacaacg ggcatgatag gattaggcat tttcttctat gtaataatat acaccagttg
     1201 gctcaaaaga aataatgttt ctaatattgt tatcggtggt tttgctggaa gcgcagcttc
     1261 tatggcaggt tggtccgtcg caaccggatc agtggataca ttaggttttc tagttggatg
     1321 gttagtgttt atgtggactc caccgcattt ctggtgtctt gcgatgaaga ctagagaaga
     1381 atatgaaagt gtgaatgttc caatgctgcc agttttggtg ggtaataaaa agacttctca
     1441 atatattctt actagtactg cgattctatt gccgtattct atctccctat attttcttgg
     1501 cttggggtta gtatatttga cagtagcgat aatagcgggc tcgcttatgc tgttctacca
     1561 ttataagtta acaaaatgcc ccactccatc ttttgcgtgg aaggcctaca aagtgactgc
     1621 cccctatcta gtaataatct ttattgcgtt ggcattcgac gcacttttct attatcgatt
     1681 atgataggct tttgctttgt tagtactaac agaattttga taggcatatt tgacagagaa
     1741 catatcagca ccaagacaaa tggaagacct gctagtcgcg tgttgattaa tttcgtaatt
     1801 caaatttata atagcatatc tcgttgcgag tagtatattc ggtacgataa atttaactag
     1861 atacttatat gaaaacagga attcgtcaga atctaattga tcctaacaga ttgtctgctc
     1921 acatttatta cttctatttc tccgactcct ttgtctttct ttatggattc ttctaataaa
     1981 tccatttgac cttcagaatc atcaagtgta aaatcggcaa tcaatgaatt caaaccaaat
     2041 gcgataggtt ctgttacatg cgataacaat ttcataccga caggaataga cgtagataat
     2101 cgttcggcaa ccgatt
//
LOCUS       DATLQL010000542         1164 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_845594, whole genome shotgun sequence.
ACCESSION   DATLQL010000542 DATLQL010000000
VERSION     DATLQL010000542.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1164)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1164)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1164
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_845594"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(74..>1164)
                     /locus_tag="VNB68_05540"
     CDS             complement(74..>1164)
                     /locus_tag="VNB68_05540"
                     /inference="COORDINATES: protein motif:HMM:NF018479.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="low temperature requirement protein A"
                     /protein_id="HVD36845.1"
                     /translation="VVSQLSENLSHNISLVGILSFVALYIPVWFAWIGATFFATRFGT
                     DDLAHRIFTLLQMMGAAAMAVNVSHGLGGTSAGFALSYAAIRFLLVIEYVRIGRRIPS
                     TKPLTERYSVGFASSAVLWTVSAFVPPPLRFILWGIGLTIDFITPFLAGQLAIKFAPH
                     ISHLPERMGLFVIIVLGESILGIVVGLAGHEWDIYSSVSVGLGLSIPFSLWWIYFDNI
                     GGSAIRAATEKGRRGIYYIWLYVHFPLVVGLTAIGIGIKQAASSNHEIPLPFSDLWLI
                     CGSISGCLFVQAILHLVAVEDPDIEPKTRRKWATYRIISGTVIISIAILGLKLYPAVL
                     MLILAFICALQIVLDLRDHPHHRIFRLW"
BASE COUNT          419 a          245 c          201 g          299 t
ORIGIN      
        1 ctaagtgtga aagaataata gaatccataa tagaatccga tcctagaact ctgctactcc
       61 ttcagctaga tagctaccac aatctaaaaa ttctatgatg aggatgatct cttagatcaa
      121 gaacaatttg aagagcacat ataaatgcta aaataagcat caatactgct gggtataact
      181 tcaaacctag aattgctata gaaattatga cagtaccaga aataatcctg tacgttgccc
      241 attttcttct ggtcttaggt tcaatatccg gatcttcgac cgctaccaaa tgaagtattg
      301 cctgaacaaa taaacagccg gatattgaac cacaaataag ccaaagatct gaaaaaggta
      361 aagggatttc atggttactt gatgctgctt gttttatgcc aataccaatt gctgtaagcc
      421 caactactaa agggaagtgt acgtacagcc aaatatagta tatacctctt ctaccttttt
      481 ccgtagctgc tcttatagca gagccgccta tattatcaaa atatatccac cacagactaa
      541 atggaatact aagtcctaag cctacagaca ctgatgaata aatatcccat tcatgaccag
      601 caagaccaac aactattcct aaaattgatt cccctagtac aataataaca aagagtccca
      661 tccgctctgg taaatgggat atatgaggtg cgaacttgat ggctaattgt ccagctaaaa
      721 atggtgttat gaaatctata gttaagccta ttccccataa aatgaatcgt aaaggaggtg
      781 gtacaaacgc agatactgtc cataatacag ctgatgacgc gaaaccgact gaataccttt
      841 ctgtcaacgg cttagtagaa ggaatgcgac gacctatacg aacatactct attacaagaa
      901 gaaatctaat tgcagcataa gaaagtgcaa aaccagctga agttccaccg agtccatgag
      961 aaacatttac agccatagcc gcagctccca tcatctgcag caaagtaaat attctgtgcg
     1021 ctaagtcatc agtgccaaat cttgtagcaa aaaaggtagc accaatccat gcaaaccata
     1081 cagggatgta aagagcaaca aaacttagta taccaaccaa agaaatatta tggcttagat
     1141 tttctgataa ttgggatact actg
//
LOCUS       DATLQL010000543         1135 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_132974, whole genome shotgun sequence.
ACCESSION   DATLQL010000543 DATLQL010000000
VERSION     DATLQL010000543.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1135)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1135)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1135
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_132974"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..324
                     /locus_tag="VNB68_05545"
     CDS             <1..324
                     /locus_tag="VNB68_05545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36846.1"
                     /translation="FKDIKDDTLRVFQWHGDTYDLPVTSTIMASSKLYPQAFRIGNLF
                     GIQFHLEVTEKMIRSWSQEYKQEIEDEHLRPEELFSNRSTEIEKSKENCRVVYSNFSK
                     VIKEN"
     gene            497..>1135
                     /locus_tag="VNB68_05550"
     CDS             497..>1135
                     /locus_tag="VNB68_05550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia channel protein"
                     /protein_id="HVD36847.1"
                     /translation="MLISTGLVMLMIPALGFFEAGLIRSKNSLSVIVQTFSGLAILSI
                     LWLVIGFTLVFAPSHGGIIGGLNWILFNNVPFDKPLVYAPTIPGVSFASYQMMFAIIT
                     PLLITGAFAERLKFSSFVIFIVLWSIIVYYPLAHWVWGKGWLANIGVVDFAGGIVVHT
                     SAGVSSIAAALILGRRRNFGPDIFRPHSVPLAAIGAALLWIGWFGFNAGSALT"
BASE COUNT          317 a          201 c          248 g          369 t
ORIGIN      
        1 ttcaaagata taaaagatga tactttacgc gtttttcagt ggcacggaga tacctacgat
       61 cttccggtta catcgacgat aatggcatca tcaaagctat accctcaagc attcagaatc
      121 ggaaatctat tcggtatcca atttcacctt gaagtgactg aaaaaatgat tagaagttgg
      181 tcgcaggagt ataaacaaga aatagaggat gagcatttaa gaccagaaga gcttttttct
      241 aatagaagta cggaaattga aaaatcaaag gagaactgta gagtagttta ttccaacttt
      301 tcgaaagtca ttaaggagaa ctgaaatttt ataatgacga cggctttata atatagcgat
      361 acagtatcat aatctttctg gtgctcacgc aaacacaata aagtacaata aaggaaatta
      421 atctaggata aaattttatc tagtgtgcgt actgttctgc ataactatgg cgataagttc
      481 gggtgacact tcatggatgt taatatcgac tggattagta atgctgatga tacctgcttt
      541 gggctttttt gaagctggcc taattcgaag caagaattcc ctttcagtaa ttgtacaaac
      601 tttttcaggt ctagcaattc tctcgatcct gtggttagtc ataggattca cattggtctt
      661 cgctccatcg catggaggta ttatcggagg tcttaattgg atattattta ataatgttcc
      721 ttttgataag ccattagttt atgccccaac tattcctggg gtgagctttg cttcctatca
      781 gatgatgttt gcaataatta ctcctctctt gattacaggt gcatttgctg aaagattaaa
      841 gttcagttcc ttcgttattt ttatcgtttt atggagtatt atcgtatatt atcctctggc
      901 gcactgggtc tggggcaaag gatggcttgc aaacattggt gttgttgatt ttgccggggg
      961 aattgttgtc catactagcg ctggtgtatc ctcgattgct gctgcactta tccttggtcg
     1021 gaggaggaat tttggccctg atatattcag gccacacagt gtacccctcg ctgcaattgg
     1081 agctgcatta ttgtggatag gctggttcgg attcaacgca ggtagtgcct tgacg
//
LOCUS       DATLQL010000544         1123 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_311572, whole genome shotgun sequence.
ACCESSION   DATLQL010000544 DATLQL010000000
VERSION     DATLQL010000544.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1123)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1123)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1123
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_311572"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(54..740)
                     /locus_tag="VNB68_05555"
     CDS             complement(54..740)
                     /locus_tag="VNB68_05555"
                     /EC_number="5.1.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-hydrate epimerase"
                     /protein_id="HVD36848.1"
                     /translation="MNPKEASISSRQMYQIENNGSSLLGMHKSYMMENAGHGLADFII
                     SKMGSALSGKSIVSLCGTGNNGGDAIVASRHLAGYYGAKVTVIILGNPDEISTEECSA
                     NWNLIKKMRSIRIFSGTNVLESAAEEISNGDIIIDGIFGTGIKGNIREPHSSAIDMIN
                     NSKGYIVSVDIPSGLDPDTGMTHDKCVKADATVTFHRIKNGLIGRQEYTGQLHLEKIG
                     IPIEAEDNVL"
     gene            complement(807..>1123)
                     /locus_tag="VNB68_05560"
     CDS             complement(807..>1123)
                     /locus_tag="VNB68_05560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36849.1"
                     /translation="SDNLYVPSDQIERCIQIKKMFGVYRTSHAILAFKFMRKKRVLQN
                     GEKTYINRKLQEYYKIADKYAGPSPPNIRCTYDGKTYEIRGDKTRKCHLVDYPMPFQS
                     QR"
BASE COUNT          288 a          246 c          202 g          387 t
ORIGIN      
        1 tttgccattt gtcctactga aagttgaatg attttcatgg ttccaccccg agattaaagg
       61 acgttatctt cagcttcaat cggtattcca atcttttcca ggtgcaattg gccagtgtat
      121 tcctgcctcc ctattaaacc atttttgatt ctgtggaagg tgacagtagc atcagccttt
      181 acacatttat cgtgagtcat gccggtatca gggtcaagtc cagagggaat atcgaccgat
      241 actatatacc ccttggaatt gttgatcata tcaatagcag aagaatgtgg ctcgcgtata
      301 ttacccttaa tccccgtacc gaaaattcca tctattatta tatctccatt tgaaatttct
      361 tctgcagcgc tctccaatac gttggttcca gagaagattc taatcgatct cattttctta
      421 atcaagttcc aatttgcgct gcattcttca gtgctaattt catctggatt ccccaagatg
      481 attactgtaa cctttgcacc gtagtaacct gcaagatgtc tggatgcaac aattgcgtcg
      541 ccgccattgt ttcctgttcc acatagcgaa acaatgctct tccctgacaa agcagatccc
      601 atttttgata tgatgaaatc ggccaatccg tgtcctgcat tttccatcat gtaggacttg
      661 tgcattccta aaagggaaga accattattt tcgatctgat acatttgtct agatgaaatg
      721 gaggcttctt ttggattcat agtagaatct atctcaccgg attctaaaat aaaagctata
      781 cgcatccacg caagtctaga agttgatcat cgctgggatt ggaatggcat gggataatct
      841 acaagatggc attttcttgt tttatctcct cttatttcat acgtttttcc atcataagta
      901 catcttatat taggtggact tggaccagca tatttgtctg ctattttata atactcttgt
      961 aatttcctat tgatgtatgt tttctctcca ttttgtagga ctctcttctt tctcataaac
     1021 ttgaacgcta ggattgcatg gctcgtcctg tagactccaa acatcttttt aatctggata
     1081 catctttcta tctggtcaga gggcacataa aggttgtcac tgg
//
LOCUS       DATLQL010000545         1512 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2090476, whole genome shotgun sequence.
ACCESSION   DATLQL010000545 DATLQL010000000
VERSION     DATLQL010000545.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1512)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1512)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1512
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2090476"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1052)
                     /locus_tag="VNB68_05565"
     CDS             complement(<1..1052)
                     /locus_tag="VNB68_05565"
                     /inference="COORDINATES: protein motif:HMM:NF018332.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HVD36850.1"
                     /translation="MSSTAVIKPPEEISFDAWKTILILSGTIVIFLYLNTAMSPALPS
                     IAEDFQISTSLSSWVMTSYMVCGAVMTVIMGRLSDLIGAKKMLMIMMVCFTVGTILAP
                     FAPNISTLLALRVLQGIAVASTPISTKLIRDKVPISKFPIGLSIYLSAYSGGMALGAV
                     LGPVVAASAGWQGNFYFCAPIAVVLLFVCWKFIHSDESKKIHEHDLADKESSSDIPTK
                     AKKQDKKLHMDFMGIITLTVTLVSFLIAITFSGSIATNLVAFVVPLIIGVISLVLFIK
                     VEKRVKSPLVNLKLVFHPVILTGNIMMLMFGILQYFVITGIPQLGSAPPPSGLGLEPL
                     KVGFLQLSFGLSMMIFG"
     gene            1290..>1512
                     /locus_tag="VNB68_05570"
     CDS             1290..>1512
                     /locus_tag="VNB68_05570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36851.1"
                     /translation="MISSCTKVDLNISIGNGYLYGEASTLYGSYKINIQEGTDNIAIL
                     PSDLDVVAGLTMISFHAGSEDEIPFRCEVT"
BASE COUNT          501 a          298 c          286 g          427 t
ORIGIN      
        1 ccaaagatca tcattgatag accaaaagac aactgtagaa atcctacctt taatggttct
       61 agtcctaacc ctgatggagg aggagcagag cccaattgtg gtatgccggt tataacgaag
      121 tactgtaaaa taccgaacat caacatcatg atgttcccag ttaaaatgac tggatgaaac
      181 actagcttca ggttaactaa tggagatttt actcgctttt ccactttgat gaaaagtaca
      241 agagagataa ctcctatgat gagaggaact acaaatgcta ccaaattagt ggcaatcgac
      301 ccgctaaatg ttattgctat tagaaaactg acgagtgtaa cagtcagcgt tataatcccc
      361 ataaagtcca tatgcagttt tttatcctgc ttcttggcct ttgtaggaat atcacttgaa
      421 gattctttgt ctgcaagatc atgctcatgt atcttcttac tttcatcact atgaataaac
      481 ttccagcata caaataacag aactactgca ataggagcac agaagtagaa attaccctgc
      541 catcctgcgc ttgcagctac aactggtcct agcacggcgc ctaatgccat gccaccagaa
      601 taggctgaga gatatatact caagccaata gggaatttgc ttattgggac cttatctctt
      661 attaacttag tcgaaattgg ggtactagcc acggcgattc cttgaagtac tctaagggca
      721 agaagagtgg atatgttagg agcaaacggc gccaagatag ttcctacggt aaaacatacc
      781 atcattatca ttagcatttt cttggctcca ataagatctg ataaccttcc cattataaca
      841 gtcatgacag ctccacaaac catgtacgat gtcatcaccc atgacgaaag agatgtagaa
      901 atttgaaagt cttcagctat actcggaaga gccggtgaca tcgccgtatt aagatagaga
      961 aatatcacga tagtaccgct taatattaga atagttttcc acgcatcaaa ggagatttct
     1021 tctggaggct tgataacagc agtagaagac aattaatagg ataaccaaga tagcacacgt
     1081 atttaaaatt atgctacgat cattaagcat ctataaataa aaaataatga tatatatact
     1141 atagcgagga aaatggcaca catctgataa agataatctt tgatgtggtc ggtattttca
     1201 agagttattg acaatctgac atcctccttt ctattgctac aattgcaata caattttgac
     1261 ggttcaaaat taaagataaa tattagcaat tgatatcttc ctgtacgaaa gtcgatctaa
     1321 acatatcaat tggaaacggt tacctatacg gcgaggcgtc taccctttat ggatcttaca
     1381 agattaacat tcaagaagga acagataaca tagctattct tccaagtgat ttggatgtcg
     1441 ttgcaggtct taccatgatt tcctttcatg caggcagcga ggatgagatt ccttttcgat
     1501 gtgaggttac ga
//
LOCUS       DATLQL010000546         1631 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2266907, whole genome shotgun sequence.
ACCESSION   DATLQL010000546 DATLQL010000000
VERSION     DATLQL010000546.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1631)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1631)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1631
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2266907"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..515
                     /locus_tag="VNB68_05575"
     CDS             <1..515
                     /locus_tag="VNB68_05575"
                     /inference="COORDINATES: protein motif:HMM:TIGR00405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transcription elongation factor Spt5"
                     /protein_id="HVD36852.1"
                     /translation="PHTESNSNIHPDSQVQAHTEIPISDSKFFAIRTTGGQEHVVVNM
                     AQNKINSKKIPVRSILLLDSFKGYIIIEAPDSNIAYEALAGIRHVKGQIRGELPYKDI
                     EGYLVKRPVVTELNIDDTVEVIAGPFKSMKAKITRVDYEKQEATVLLLDSPYQIPVTV
                     DSNYLKKIAQ"
     gene            654..1136
                     /locus_tag="VNB68_05580"
     CDS             654..1136
                     /locus_tag="VNB68_05580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HVD36853.1"
                     /translation="MGEKKSISALVSGGEASAGPPLGPALGPMGINVLQVVNTINEKT
                     MDFHGMKVPVRVEVDPETKKFTVEVGIPPTTALIAKEANITKGSGTAGKDYVGNITME
                     GIVKVARMKMDVSYGNDVRSVAKEIIGSCVSNGIKIDDKPAKEIYSDLSSGKYDHLFS
                     "
     gene            1244..>1631
                     /locus_tag="VNB68_05585"
     CDS             1244..>1631
                     /locus_tag="VNB68_05585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TCP-1/cpn60 chaperonin family protein"
                     /protein_id="HVD36854.1"
                     /translation="MSIQQGSAGGVPVLILKEGATQTKGRDAQKNNITAAKLIAEVVA
                     SSLGPRGMDKMLVDSLGDVTITNDGATILKEIDVQHPAAKMMVEISKATDNEVGDGTT
                     SVVVLAGALIEKAEELISKDVHPTIIV"
BASE COUNT          575 a          283 c          357 g          416 t
ORIGIN      
        1 aaccacatac agaaagtaat tccaatatcc accccgactc tcaagtgcag gcccacactg
       61 aaataccaat ttcagattca aagttttttg cgatacgaac aacaggtggt caagaacatg
      121 ttgttgtaaa tatggctcaa aataaaataa actcgaagaa aatccctgtt cggtctatat
      181 tactacttga tagtttcaaa ggctacataa taatcgaagc tcccgattca aatattgcat
      241 atgaggcgtt ggctggcatt cgtcatgtaa aagggcaaat tcgcggagaa ctcccttaca
      301 aggacataga ggggtatctg gtcaaacgac cagtagtcac cgaattaaat atagatgata
      361 ctgtagaagt tatcgcaggt ccattcaagt ctatgaaagc aaagattaca cgagtcgatt
      421 acgaaaaaca agaggcaaca gtattactat tggactcccc ttatcagata cctgtaactg
      481 tggattcaaa ctatttgaaa aaaatagcac aataaacaaa ttcattcacc tatgtgtaat
      541 aaatttcggt attccacatt gcattgaagt aatatttcaa tctctccatt tcttgttcca
      601 taaaacgaac tattaaatta aaggagggta tcaactatga agattattct acaatgggcg
      661 aaaagaaatc catttctgca ctagttagtg ggggagaagc aagcgcagga ccacctctgg
      721 gtcctgcatt gggtccaatg ggcataaacg tattgcaggt tgtgaataca ataaacgaaa
      781 aaacaatgga ttttcacggg atgaaagtac cagtaagggt ggaagtagat ccagaaacca
      841 agaaatttac cgttgaagtg ggaattcctc cgacaacggc attgatcgca aaggaggcta
      901 atatcactaa ggggtcgggt actgcaggca aagattacgt cgggaatata acaatggaag
      961 gcatagtcaa ggtagcgagg atgaaaatgg atgtgtctta tggtaatgat gtcaggtcgg
     1021 tagcaaaaga aataattggc tcttgtgtaa gtaacggaat aaaaatagac gataaacctg
     1081 caaaagagat ctattctgat ctttcaagtg gaaaatatga ccacctattt tcgtgacttc
     1141 atgcaaatat taacttctat cccgtgttag acaagttcca atagtaagtt taaaatacct
     1201 aaactttaca tttattttcg aaaatttagg agaaaagtga aaaatgtcaa tacaacaagg
     1261 ttctgctggc ggtgtaccag tattaatatt aaaggaaggt gcgacccaaa ctaaaggtcg
     1321 agatgcacag aaaaataata ttaccgctgc aaaattgatc gcagaggtag tagcgagctc
     1381 cttaggtcct cgtggaatgg ataagatgtt agtggatagc ctaggagatg tgacgataac
     1441 aaatgacggg gcaacaatcc tcaaagaaat tgatgttcag catccggctg ccaaaatgat
     1501 ggttgagata agcaaggcaa ctgataatga ggtaggggac ggtacgacat cagtggtggt
     1561 tctcgctggg gcattgatag aaaaggctga agaattgatt agtaaagatg ttcatccaac
     1621 cataatagtt g
//
LOCUS       DATLQL010000547         1236 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_312409, whole genome shotgun sequence.
ACCESSION   DATLQL010000547 DATLQL010000000
VERSION     DATLQL010000547.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1236)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1236)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1236
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_312409"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(161..523)
                     /locus_tag="VNB68_05590"
     CDS             complement(161..523)
                     /locus_tag="VNB68_05590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36855.1"
                     /translation="MSEDHQRLEQTASAIEDLIYMGAIRLADKVDRALLSPQLSLVVS
                     NMMSSMKIDEGADSTEIMKLMYYSLLIYMSEYLKVPKSFMMALGNDLEKNRDNMESGT
                     LVNTYVTVLTEIWIHNRQ"
     gene            complement(552..935)
                     /locus_tag="VNB68_05595"
     CDS             complement(552..935)
                     /locus_tag="VNB68_05595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36856.1"
                     /translation="MSDSIDYILQLPQRKIIVAENDVFLDKKIRNDIFILMVEESVGS
                     AGGRAAGFGHRRVERIYGFSCYESGECTKFFDTTKQGEIDQFDIPYSAVAMDIRLSDG
                     TPYTLQGIVDRDSVATYRSVVGNVK"
BASE COUNT          359 a          259 c          224 g          394 t
ORIGIN      
        1 gagatctatt ttctttggaa tacagcctca atggcatcgc aagagtggca atgataataa
       61 taaaaataaa aggataggaa aacccccatc acagagatgc aaaaatcttg cttgattttt
      121 ataattgcaa tagtcaccct gacatttttc ccttatgctg ctactggcga ttgtgaatcc
      181 aaatctccgt taatacagta acataggtat tgaccagtgt tccagactcc atgttgtccc
      241 gatttttttc tagatcattt ccaagcgcca tcataaaaga cttgggcacc tttaggtact
      301 cgctcatgta aataagtagc gagtaataca tgagcttcat tatctccgtg ctatcagcac
      361 cctcatcaat tttcatactc gacatcatgt ttgaaactac aagtgataac tgaggtgaca
      421 acagtgcgcg gtctaccttg tcggcaagcc tgattgctcc catgtaaatt aaatcttcta
      481 ttgcggaggc ggtctgctcc aggcgctggt gatcttctga cattattgtt gattgttctt
      541 ggtcggcaag cctattttac attgcctacc actgaacggt aggtcgcaac agaatcccga
      601 tctactatcc cctgcaatgt gtatggcgta ccgtctgaga gcctaatatc cattgcaaca
      661 gcactatatg gtatatcgaa ttgatcgatc tcgccttgct tagtggtatc aaagaacttt
      721 gtacattcgc cgctttcata gcatgaaaag ccatagatcc tctcaactct tctgtgtcca
      781 aatccagctg ctcttccacc tgcagaacca accgattctt ccaccattaa aatgaaaata
      841 tcgtttctta ttttcttgtc caagaaaaca tcattctcag ctacaatgat tttgcgttgt
      901 ggaagctgta agatgtaatc aatcgaatct gacatttgtg tatcagggta gaggaggtag
      961 taaataataa ttatttgttc aagctctttt ctctgctcta ttcaactttt tttgattatt
     1021 gaagcaaata tagaaacaac tgcaattgat accttacatg ctagaaagag aacttacacg
     1081 atgagattga ttgacattgt tgctatttct gcatgcagtg gcccaaatag tccacagcat
     1141 tattattatt attgaagatg acattttggc atatgaattg ttttgtgata aatatataat
     1201 actacaaatt gcatgattta gcatggtcaa gactgc
//
LOCUS       DATLQL010000548         1357 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1732108, whole genome shotgun sequence.
ACCESSION   DATLQL010000548 DATLQL010000000
VERSION     DATLQL010000548.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1357)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1357)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1357
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1732108"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(293..>1357)
                     /locus_tag="VNB68_05600"
     CDS             complement(293..>1357)
                     /locus_tag="VNB68_05600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36857.1"
                     /translation="NLGSQLIGNRTALILSLFALSAFSFHLENDILAASYPFIFFDPF
                     GKSSSSPLHASLDEICNDGQDNNGDGLVDENCSNSQTGKESDNNHPPAIPQKDPDRSG
                     IREIYPTKPNGQEWFIRPSHPEEDPRFSPQTGLIPNSDGSFKIKSTKVRMGVFTSSGY
                     KPNLIQTLDHSKIASKGYMQSPNDWRDVEITGYIKLNSGSGDNFAWYARGGRHTGFGS
                     PEGCEGVAYKGDLYFDGQTRWTKEQWHTGGYVFSDYLKGTGSIKGKWVGFKSIMYNFD
                     HSGKTSVKLEIWLDKENTNQWIKVNERVDTGGWGNNGRECGGTPDQIITWGGPIASFR
                     WDSASDVDIRDFSVREIAPT"
BASE COUNT          373 a          306 c          234 g          444 t
ORIGIN      
        1 cgttatgtct acaacgtaga gcataaaata gacttttgca ataagtacgg atcctatcgc
       61 tgcaagtaat aagaatctga caaacgatat tctccttttt tgttcaatat tctgtgtaac
      121 tttctgtaag ctcattcatg gtcactggtt aattcaaata tttcatcatt tgatttcact
      181 tcaatattag taggccgcat ctatacgtga tctatctagt tattttctta ttaacattat
      241 gaatatatag tcatgtctac tgttgtcaaa aagatcagat ctgatattag tgctatgttg
      301 gggcaatttc cctcacgctg aaatctctta tgtccacgtc gcttgcactg tcccatctga
      361 atgatgctat aggtcctccc catgtaataa tttgatcagg cgtaccacca cattctctac
      421 cattatttcc ccaaccacca gtatctaccc gctcattaac tttgatccat tggttagtat
      481 tctctttgtc aagccatatc tctaacttta cacttgtttt gcctgagtga tcaaaattat
      541 acataattga cttaaatcct acccactttc ccttgatgga acccgttccc tttagataat
      601 cactgaagac ataccctccg gtatgccact gttcttttgt ccatcgtgtc tgaccatcaa
      661 aatagagatc acctttgtag gcaacgccct cacaaccttc aggagaacca aatcctgtat
      721 gccgcccgcc ccttgcatac catgcaaaat tatctccaga tcccgaattg agcttaatat
      781 atccagtaat ctccacgtcc ctccaatcat tcggagactg catgtacccc tttgaagcaa
      841 ttttgctgtg atcaagtgtt tgaatcagat taggcttata tccactagat gtaaataccc
      901 ccatccttac tttggtagat ttgattttaa aggaaccatc agaattagga attagtcccg
      961 tctgtggcga gaatcgagga tcctcttctg gatgtgaggg tcgaataaac cattcttgtc
     1021 catttggctt tgttggataa atctctcgaa tcccagatct atcaggatcc ttttgaggta
     1081 tggctggggg atgattatta tcactttctt tgccagtttg agaatttgaa cagttttcat
     1141 ccactaaacc atctccgtta ttgtcctgac catcattgca tatctcgtca aggctggcat
     1201 ggaggggact gcttgaagac tttccgaacg gatcaaaaaa tataaaggga taagaagctg
     1261 ctaaaatgtc attctctagg tggaagctaa acgctgataa ggcaaaaagc gatagtatta
     1321 atgcggttct gtttccaatt agttgtgaac ctaaatt
//
LOCUS       DATLQL010000549         1305 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1911105, whole genome shotgun sequence.
ACCESSION   DATLQL010000549 DATLQL010000000
VERSION     DATLQL010000549.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1305)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1305)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1305
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1911105"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..640
                     /locus_tag="VNB68_05605"
     CDS             <1..640
                     /locus_tag="VNB68_05605"
                     /inference="COORDINATES: protein motif:HMM:NF012722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HVD36858.1"
                     /translation="LSFEPYDKVFLSSNSLRLEGIAMSIVLALAATLISLLLHKSFRS
                     LNSLTTKLHKSNEELISKENELKTAKQSLEEKNKELEEANEQLLQRERTQKDFINVAA
                     HELRTPIVPILNLAELLHSKLKKQSAGLIGIEDGRKNERGKIEEIVQVIVRNAYRLYQ
                     LTEDILDVTKIETQSLKLRIEQLDFNQIVSSAVSDFRKNNETRNNVEIKFAN"
     gene            656..1003
                     /locus_tag="VNB68_05610"
     CDS             656..1003
                     /locus_tag="VNB68_05610"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HVD36859.1"
                     /translation="MRGDKGRLVQVITNLLGNALKFTKEGQITVTLTCDNNNQVMIIV
                     KDSGTGIDQEIYPRLFSKFATKSEEGTGLGLYISKKIVEAHGGKIWAQNNPDGKGTTF
                     YFTLPIQSPESLR"
     gene            1005..>1305
                     /locus_tag="VNB68_05615"
     CDS             1005..>1305
                     /locus_tag="VNB68_05615"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HVD36860.1"
                     /translation="MSGDKPMHERKILLVDNEPDVTYAIESVLEDNGFEVDSFNDPVL
                     VCDTYKSNYYDLVILDIKMPKMDGFQLYDCIRQKDRKTKICFLTASEMFYESLRQA"
BASE COUNT          461 a          209 c          275 g          360 t
ORIGIN      
        1 attatctttc gaaccttatg acaaagtatt cttatcttca aactccctcc gattggaagg
       61 aatcgctatg agcattgtcc ttgcattagc ggcaacttta atctcactac ttcttcacaa
      121 gtcatttcgc tctttaaata gtctaactac aaagcttcat aaatctaatg aggaactgat
      181 ttccaaagaa aatgaactca agactgcgaa acagtctttg gaagagaaaa ataaagaact
      241 tgaagaggcg aacgagcagc tattacaaag agaaagaacg cagaaggact ttatcaatgt
      301 tgctgcccat gaacttcgaa cgccaattgt accaattctt aatctggcag aattattgca
      361 ttcgaaacta aaaaaacaaa gtgctggttt gatcggcatt gaggatggga gaaaaaatga
      421 aagaggaaaa attgaggaaa ttgtacaggt tattgttaga aatgcctata gactgtacca
      481 gctcacagaa gatatactag atgttactaa gatcgagact cagtcactta agcttcgcat
      541 tgagcaacta gatttcaatc agatcgtaag ttctgccgtc agcgatttta ggaaaaataa
      601 cgaaactcgg aacaacgtgg aaataaaatt tgcgaactag gcaaatggag tatcaataag
      661 gggcgataaa ggaagacttg ttcaggtgat tacaaattta cttggtaatg ctttaaaatt
      721 tacaaaggaa ggtcaaatta cagtgactct cacatgtgat aataacaacc aagtgatgat
      781 aatagttaag gattctggta cgggtattga ccaagagatt tatccaagat tattctcaaa
      841 atttgccacc aagtccgaag aaggaactgg acttgggtta tatatatcta agaagatcgt
      901 ggaagcacat ggaggtaaga tttgggctca gaacaatccg gacgggaaag ggactacttt
      961 ttattttact ttgcctatac aatcgccaga gagcctaaga taaattgagt ggtgataaac
     1021 caatgcatga aaggaagatc ttgctggtag ataacgagcc agatgtaacg tatgccatag
     1081 agagtgtttt agaggataac ggatttgaag ttgattcctt taatgatccc gttctagtgt
     1141 gtgataccta taaatcgaat tattatgatt tggtaatttt ggatatcaag atgccgaaga
     1201 tggatgggtt tcaactttat gattgcatta gacaaaaaga ccggaaaacg aaaatatgtt
     1261 ttttaactgc aagtgaaatg ttttacgaga gtcttagaca agcac
//
LOCUS       DATLQL010000550         1298 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1911320, whole genome shotgun sequence.
ACCESSION   DATLQL010000550 DATLQL010000000
VERSION     DATLQL010000550.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1298)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1298)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1298
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1911320"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(128..>1298)
                     /locus_tag="VNB68_05620"
     CDS             complement(128..>1298)
                     /locus_tag="VNB68_05620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36861.1"
                     /translation="ERQNGVWKYEVNSGRFNFFPIPESPKDFGTTYPVAIAFDEKDNI
                     YFAGIRSQSIWFGNVTEMQNNSSIGINSIPLPIAGFKGIDPTLISTGSLQIDNKRNVI
                     WASMLAFGIKGELYKYDVKSNVSWTYGLPANLNSPVGIVLDENGNPWVSDHGTSIFFL
                     LNATNGKVTKFTTAPASPRISPGTDKDSNAYTLPYWIRKDSNGSFWFNEHTGNKIGKF
                     DPKNRILNEYWIPTQNPLWARCELPATTACGISNALQFSIGKNNELWFSEWTENKLGM
                     LNTSSPIPFKVSIAEANITIKRGESKEIPVLVSTDKQVDLRMIASSTLTPTGGFGNST
                     TSFSQDSVSVQPGEEKKISFLITPSMDTTPDDYTFMIGVENDQVSYMKAISVKIV"
BASE COUNT          360 a          246 c          252 g          440 t
ORIGIN      
        1 tttatcttca ttaattggag ttaaattttg cttcaatgat gttaattgtt gaagtgactt
       61 ggtgtaatac cataattcct aaaatcgaga aatatgaaat taaggtaatt cagttttcaa
      121 tagtagatca tacaattttt acgctaattg ccttcatata tgaaacttgg tcgttttcta
      181 ccccgatcat gaatgtataa tcgtcagggg ttgtgtccat tgaaggagtg atcaaaaagg
      241 atatcttttt ttcctcgccg ggctgcaccg aaactgaatc ttggctaaag gaagtagttg
      301 aatttccaaa tcctcctgtc ggagtgagag ttgaagaggc gatcattcta agatctacct
      361 gcttgtcagt agagactaaa actggaattt ctttactttc tcctcttttt atagtgatat
      421 tcgcttcagc tatactgact ttgaatggaa taggggacga tgtgtttagc atacctaatt
      481 tattttccgt ccactcactg aaccacaatt cgttattttt tcctatcgaa aattgtagtg
      541 catttgatat gccacaggct gttgtcgcag gcaactcaca tcttgcccaa agtgggtttt
      601 gcgtgggtat ccagtattca ttcaagatgc ggttctttgg atcaaatttg ccgattttgt
      661 ttccagtatg ttcattgaac cagaatgagc cgtttgagtc ttttctaatc cagtaaggga
      721 gagtataggc gttgctatcc ttatctgttc caggtgaaat cctcggtgac gcgggagctg
      781 tagtaaattt tgtaactttg ccatttgtgg catttaatag aaagaaaatg ctagtgccat
      841 ggtctgaaac ccatgggttc ccattttcat ctaaaacaat ccctacagga gaattcaagt
      901 ttgctggcaa gccataagtc caacttacat tactttttac atcatatttg taaagttctc
      961 cttttatacc aaatgccagc atcgaagccc aaatcacgtt tctcttattg tcaatttgaa
     1021 gagaccctgt gctaataaga gtgggatcta ttcctttgaa gccagcaatt ggcaatggaa
     1081 ttgaatttat tccgatggat gaattattct gcatttcggt aacgttgcca aaccaaattg
     1141 actgagaacg aatacctgca aagtatatgt tgtctttttc atcaaaagct attgccacgg
     1201 gatatgttgt tccaaaatcc tttgggctct cagggatagg aaagaaattg aatctacccg
     1261 aatttacttc gtacttccaa acgccatttt gtctctca
//
LOCUS       DATLQL010000551         1072 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2621053, whole genome shotgun sequence.
ACCESSION   DATLQL010000551 DATLQL010000000
VERSION     DATLQL010000551.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1072)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1072)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1072
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2621053"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..744)
                     /locus_tag="VNB68_05625"
     CDS             complement(<1..744)
                     /locus_tag="VNB68_05625"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HVD36862.1"
                     /translation="MKLQGFNIIILILSGVSVAYIAYPLVTIVTFVEPSKLLDSLARP
                     AVGDAFILSLISATISTLLVALFGIPLAYLLARHNNFPGKFLLRLIVIIPLVLPPLAS
                     GALLLGVFGPYSPLVQVVRGVEFTQSPLGVIVAQTYVASPFMILASQAAFESVDESYE
                     KIARVLGKNRAETFLKISLPLAKTGIIIGFIMSWVRAVGELGATMMMAYNPHTISIQI
                     FEDNAIGGIRQAIPGIMLVILLAIIALIAF"
BASE COUNT          342 a          213 c          208 g          309 t
ORIGIN      
        1 gaacgcaatt aaagctatta ttgctaaaag gatcactaac ataatacctg gaatagcctg
       61 cctaattcca ccaatcgcat tgtcttcaaa gatctgaatt gagatggtat gcggattgta
      121 tgccatcatc atagttgctc cgagctctcc cacggcccta acccatgaca ttataaaacc
      181 tataattatt ccagtcttag ccaacggaag tgaaatcttt aagaaggttt ctgctctatt
      241 cttacccaaa actcttgcaa tcttctcata ggactcatca actgattcaa acgctgcctg
      301 acttgcaaga atcatgaacg gggaagcaac ataagtttgt gctactataa ctccaagtgg
      361 agattgtgtg aattcgactc cacgaactac ttggaccaaa ggcgagtagg ggccaaatac
      421 gcctaagaga agagcaccac ttgcaagtgg aggcaaaact aacggaataa taacaataag
      481 cctcaagaga aacttacctg ggaaattatt gtgtctggct aacaaatagg caaggggtat
      541 cccaaagaga gctacgagta atgtagaaat tgttgctgat attaagctta gaatgaaggc
      601 atcgccaact gcaggtctcg ctagagaatc taacagcttt gaaggctcta caaaagtcac
      661 gattgtaaca agtggatatg caatgtatgc tacagatact ccagacaaaa tcagtatgat
      721 gatattaaat ccttgaagct tcatgcctat ttcaccccaa atactatcac tagtatcgtg
      781 cttgttagat gtttgttatt attatcttac catttttcac tatgatttct gttttatcgg
      841 ttctagaata ttccttatag aagcgggcac cttctctatg tctccttcga tgagcggttt
      901 gaggtagttt aatccttggg tttttaagat acgttctcca ttgctatatc gcaaaggtcg
      961 atcttgcagt tgcagctgac gtaacggagg taatgatcag aatatgacca aagagtaaaa
     1021 aaaagaacat ctcattaaaa tagatttttt tggtttgcaa aataatagtc tg
//
LOCUS       DATLQL010000552         1150 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_135652, whole genome shotgun sequence.
ACCESSION   DATLQL010000552 DATLQL010000000
VERSION     DATLQL010000552.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1150)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1150)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1150
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_135652"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..636
                     /locus_tag="VNB68_05630"
     CDS             <1..636
                     /locus_tag="VNB68_05630"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HVD36863.1"
                     /translation="FSVGGDMSNLKEICNIAKEFDALTVVDDAHGDFIYGPEGAGVPS
                     YFKVDGLIDLHVSSLSKALGCFGGYVATSEDIREYLINKSRQFIFTSALPAHLCVAAN
                     TALNIARKGNLQEVLFRNVNLFTGLLRKHGFNIGNSRSQIIPLFIGSEEKAVRFAEML
                     LENSIFVHPMRFPVVKKGSSVIRISLTASHTKTELITALQIIEEIAEELLA"
     gene            800..1114
                     /locus_tag="VNB68_05635"
     CDS             800..1114
                     /locus_tag="VNB68_05635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36864.1"
                     /translation="MATERQCEEISRYFSFLNTESLIAGLKFAYNRQIAKDKGYLMLG
                     RKSKVKRETNVLTAGQAKWRLSNWKSMIKTYRDKGYSYPTISRIKKEIGKIALGRNSL
                     SY"
BASE COUNT          374 a          201 c          255 g          320 t
ORIGIN      
        1 ttcagtgttg gcggagatat gtctaatttg aaagaaatat gcaacatagc aaaggaattt
       61 gatgccctaa cggtagttga tgatgctcac ggcgacttta tatacggacc agagggagcg
      121 ggcgttccgt cgtatttcaa agtagatgga ctaatcgatt tgcacgtgag tagtcttagc
      181 aaggcgctag gttgttttgg aggatacgtt gccacttcag aagatatccg agaatatcta
      241 ataaataagt ctaggcagtt tatatttacc tccgctctcc cggcccatct ttgtgttgca
      301 gcgaatactg cgttaaatat tgcaagaaaa ggaaatttac aagaggtcct atttagaaac
      361 gtaaatttgt tcactgggct actaaggaag catggattta atataggaaa ttcccgaagc
      421 cagattattc cacttttcat agggtccgaa gaaaaagcag ttagatttgc ggaaatgttg
      481 cttgagaata gcattttcgt tcacccaatg agatttcccg ttgtaaagaa aggttcttct
      541 gtgatcagga tttcactgac agcatcgcac acgaagacgg aactaataac agcattacaa
      601 ataattgaag aaattgctga ggaactactt gcgtaaagaa catgaaatac ccactgtcct
      661 tcgccttccg ccttccattt tgtttgttag ttgcataatg tatgacagaa ccacaatatt
      721 tcaaaattcg aatttagaaa tatttatttg ttgtccaggc ataggaaagt tattgcagag
      781 ggagcttaac ttcaaattaa tggcaacaga gcgccaatgt gaagaaataa gtcgctattt
      841 ttcattccta aatacggaat cacttatcgc cggactcaag ttcgcttaca atagacagat
      901 tgcaaaagac aaaggttatt tgatgttagg gagaaagagc aaggttaaga gagaaactaa
      961 tgtgctgacg gcgggccaag caaaatggag gctctccaac tggaaatcga tgatcaagac
     1021 ttacagagat aagggttata gctatcctac cattagtagg ataaaaaaag aaattggaaa
     1081 aattgcgctt ggtcgaaata gtctcagtta ctagtataga gtatcgtgac agatagtact
     1141 gccactcttg
//
LOCUS       DATLQL010000553         2195 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2449084, whole genome shotgun sequence.
ACCESSION   DATLQL010000553 DATLQL010000000
VERSION     DATLQL010000553.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2195)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2195)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2195
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2449084"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..375
                     /locus_tag="VNB68_05640"
     CDS             <1..375
                     /locus_tag="VNB68_05640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HVD36865.1"
                     /translation="KAILQSDGKWKPSPGLIYPMLGRLLEEGLISETDSGKYRITSKG
                     LEIVDVDSVRSIMQKQLDVMLRVGNVGKFMTMDLIDRMSTLGSTLSSNLDKMTAQERD
                     KYKQFLLSEIKKLQEQEKLKNE"
     gene            428..772
                     /locus_tag="VNB68_05645"
     CDS             428..772
                     /locus_tag="VNB68_05645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36866.1"
                     /translation="MKGNYSERIDLLVARMKVMEEDIDKEIELLKQYYLEAGNLMSES
                     QNYFLNGIQAGPIAKSYLLTRRGIEVIGEEVIPIPSFIDSVIRFANYPKRKIEVLVAL
                     AKHLEKIDESRT"
     gene            918..2090
                     /locus_tag="VNB68_05650"
     CDS             918..2090
                     /locus_tag="VNB68_05650"
                     /inference="COORDINATES: protein motif:HMM:NF016027.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family protein"
                     /protein_id="HVD36867.1"
                     /translation="MARAYFTPYGVGLGHASRLVTIASRLNRDKVSVRFSSYGEAASY
                     VQMHGFKCNSVPAVELAWSDESGFSTKSSIGNIPSWFTNFSRQVAHETRNLVSFGPDV
                     VVSDSRLSPLVSAKMLGIPSISILNQVKLLLSPRLRKLIVARIFEKMNGEFMGGLWNM
                     SEKVLIPDLPPPYTISEHNIWDCDSIKKKLEFVGFTTSRPNVDKERANHAIKHLSLDA
                     SRPLVFIHISGPYKTRNSLISTIIEALSNHGTEIQYIISEGKPNGRTEPRRLSHSGWY
                     YEWCPVRDEIFEKSDLIVMRGGHTAISHAIQFGKPIVTIPIQNHGEQLGNSDKVAKLG
                     IGIKLDPLSINPRKIISAVQEVLSNNHYLENVQRVKKVADNFDGIENVLKIIRSYF"
BASE COUNT          747 a          382 c          467 g          599 t
ORIGIN      
        1 aaagccattt tgcaaagtga cggaaagtgg aaaccgtccc caggcttaat ttatccaatg
       61 ttgggtaggt tactggaaga aggactaata agcgaaacag acagtgggaa atatcgtatc
      121 acgtcaaagg gattggaaat agtcgatgtt gattcagtac gtagtataat gcaaaaacaa
      181 ctagatgtta tgcttagggt agggaatgtt ggtaaattta tgacaatgga tctaatcgac
      241 cgaatgtcga ccttaggttc tacattaagc tcgaacctcg ataagatgac cgcacaagag
      301 cgtgacaagt acaagcaatt cctcctcagc gaaataaaga agttacaaga acaagaaaag
      361 ctaaaaaacg aataaaagta atgtgagcaa tataattact aagcgtttag gatttgtgtg
      421 aaattcaatg aagggtaatt attctgaaag aatcgatctc ctggtagcgc gaatgaaagt
      481 aatggaagaa gatatcgaca aggaaataga gttgcttaaa caatattatt tagaagctgg
      541 taatttaatg tcagaatccc aaaactactt cctcaatggc attcaggccg gtcctatagc
      601 caaatcgtac ctgcttacaa gaaggggcat agaagtcatt ggggaggaag tcataccgat
      661 accttcattc attgacagtg taattcgctt tgctaattat ccgaaaagga aaatagaggt
      721 gttagtggcc ctggcaaaac acctagaaaa aatcgatgaa tcacgaacgt aacagatagt
      781 gaattgcaat gttgataagg agtctgcgga aaatgccttt ttgccagaag gagatttttc
      841 aaagtattac tacctaaaat cggtgttatc aatgtcacca atttattagt ctgcgttcaa
      901 aagtcgttgg tatattgatg gccagagctt attttacgcc ctatggtgta ggtctgggcc
      961 atgctagtcg tctggtaacg atcgcttcac gtcttaatcg cgacaaagtg tccgtaagat
     1021 tttcatctta tggagaagcg gcgtcgtatg tgcaaatgca cggatttaaa tgtaattctg
     1081 tccccgctgt agaacttgct tggagcgatg agagtggctt ctcaactaag agtagtatag
     1141 ggaatattcc atcttggttt actaatttct ccaggcaagt ggcccatgaa actagaaatt
     1201 tggtatcatt tggtccagat gtggtggtat ccgattcacg actctcgcct cttgtatcag
     1261 ccaaaatgtt ggggattccc tcaatatcaa ttcttaatca ggttaaattg ttactatcgc
     1321 caagactgag gaaattaatt gtagcaagaa ttttcgaaaa aatgaacggg gaattcatgg
     1381 gtgggctttg gaacatgtca gaaaaggtgc tcataccaga tcttcctccc ccatatacaa
     1441 tatcagagca taatatttgg gattgcgact ctataaagaa aaaactggaa ttcgtaggat
     1501 tcactacttc aagaccaaat gtcgataaag aaagagcaaa tcacgcgata aagcatctat
     1561 ccctggacgc atcgaggcct ttggttttta ttcacattag tggtccttat aaaacgcgaa
     1621 attccctaat ttcaactatt atagaagcgt taagcaatca tggaactgag atacaataca
     1681 tcatttctga gggaaaacca aatggaagaa cagaacctag aagactctcc cactcagggt
     1741 ggtattatga atggtgccct gttagagatg aaatattcga aaagtccgat ttgatcgtaa
     1801 tgcgcggagg gcatacagcc atctctcatg ctattcaatt tggaaaaccc atcgtcacta
     1861 taccaattca aaaccatggc gagcagcttg gaaattctga caaagtagca aaattgggaa
     1921 ttggtatcaa attagatcca cttagtatca atccccgcaa gataataagt gcagtacaag
     1981 aagtgttgag taataaccat tacttagaaa atgtccaaag ggtaaaaaaa gttgcagata
     2041 atttcgatgg aatcgagaat gtattaaaaa taattaggtc ttatttttga aaaaacgtct
     2101 ttgataatca tcatctattt tattgatcca cgtttcaatt tgaacagcta atctttcaag
     2161 ggagctaaaa aaatggaaaa gaagaagaaa aattc
//
LOCUS       DATLQL010000554         1466 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2621316, whole genome shotgun sequence.
ACCESSION   DATLQL010000554 DATLQL010000000
VERSION     DATLQL010000554.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1466)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1466)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1466
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2621316"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(562..1452)
                     /locus_tag="VNB68_05655"
     CDS             complement(562..1452)
                     /locus_tag="VNB68_05655"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025033.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HVD36868.1"
                     /translation="MDGDEKMSSKNRVKVDFEKELRTNFRGYNTNLTRWWNIRSCNKS
                     HCIAYRNIANYVTTHVDLIPSLVIDYGCGTGRLLGEIAVRFVDTKFIGIDGSSAMLKT
                     AKTYLKNKAPDLLNRIKLLKAPLPIRLLLGKRADLVTFTFPHILSNLYDLDLNSFLEL
                     LTYSEIENAMILAEDRGMEEVSNEYNDEDPDLLQSLLVNRVISKNLRSLVKRGSYCLR
                     VELANARREEFPEIFQKRFSFQEGSLDKSFADESLQQPFELVRSEYHRSKVMEDAYEQ
                     TGDESDRKGGYWISLLRALG"
BASE COUNT          444 a          298 c          271 g          453 t
ORIGIN      
        1 ttgatacagt ttcaatcctt caaaggtcga agtatgacga tcgttttggg taggcggaaa
       61 cagtaggttt aactgctttc tatttctgcc acgaagtcat cttcttccta tatcttataa
      121 tactatgtcg tactataata atgaatggga acgttcatat acgttggtaa ttatgcgcgg
      181 aaaacattct tcctcatcac tcttcaagat gagatgtacc taaacgacaa acacaatgta
      241 tcatagatag ttaagtagaa aataaagttg aagtcgtgcc gtgagttgcg tatttgcata
      301 agagatgctc aaaagatcgg tcaatcgttc tagtcaaaaa aaagtcgtta accaatgtac
      361 ccggtatcaa tgcaatgttg aagaaaggtt gaccattatg ggtatcaagt ataggagcag
      421 acagggggga atacccagta tactttcgcg gttatttgag gtagttaaag acgaactgca
      481 aataaccctc agatatattt caaaattaag ttactggctc atgaaacgaa cgaaggatgt
      541 tgtcgtgttg gagagatcag ctcagcctag tgccctaagc agactaatcc aatatccccc
      601 ttttctgtca ctctcgtcac ctgtctgttc gtatgcgtct tccattacct tcgaacgatg
      661 gtattcagac cgcacgagtt cgaagggctg ctgtaaactt tcatcagcga aagacttatc
      721 taacgatccc tcttgaaatg aaaatcgctt ttggaatatc tccgggaatt cttctcttct
      781 tgcattggct aattccactc gtaaacagta actacctctc ttaactaacg agcgcaaatt
      841 ctttgagatg actctgttca ctagtaacga ctgtaatagg tcaggatcct catcattgta
      901 ttcattgctt acttcttcca tccctctatc ttcagccaaa atcattgcat tttcaatttc
      961 actgtacgtt agaagctcga gaaaagagtt aagatctaaa tcgtagaggt ttgaaagaat
     1021 atggggaaag gtaaaggtaa ctaaatctgc cctttttccg agtaataatc tgatagggag
     1081 aggagccttc aatagtttta tcctattgag aagatcaggc gctttgtttt ttaaataagt
     1141 ctttgcagtt tttaacattg cagaggatcc atcaattcca ataaacttcg tatctacaaa
     1201 tctaacggca atctcgccaa gtaatctacc agtcccacat ccataatcta taaccaaaga
     1261 aggaataaga tcgacgtgag tggtaacgta atttgcgata ttcctgtagg caatgcaatg
     1321 ggatttatta caggaccgaa tattccacca tcgagtaaga ttcgtattat atcctctaaa
     1381 attagtccgt aattccttct caaagtcaac ttttactctg tttttagaag acattttctc
     1441 gtccccatcc attcaacttt atcttc
//
LOCUS       DATLQL010000555         2407 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1184189, whole genome shotgun sequence.
ACCESSION   DATLQL010000555 DATLQL010000000
VERSION     DATLQL010000555.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2407)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2407)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2407
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1184189"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(94..456)
                     /locus_tag="VNB68_05660"
     CDS             complement(94..456)
                     /locus_tag="VNB68_05660"
                     /inference="COORDINATES: protein motif:HMM:NF015610.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36869.1"
                     /translation="MTDKQPLYAGLLIGELGKQFSPSIQMSQIIAKEGKNFPSIKVNS
                     KGETMVVYGRDVFVDSIIEHNTHRENEMVIILNQRNEAIGIGRTRNKSNHIANKGKIA
                     VTTIADIGQYLREEDLDV"
     gene            complement(602..1501)
                     /locus_tag="VNB68_05665"
     CDS             complement(602..1501)
                     /locus_tag="VNB68_05665"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RsmB/NOP family class I SAM-dependent RNA
                     methyltransferase"
                     /protein_id="HVD36870.1"
                     /translation="MTSRFIEIIPDTQKLLEALASKPRRYIRINTLKTNVKDLVERLL
                     AIGFDIKQTILPEVFEITREKFSLGSTIEYLLGYYYIQDLSSCLAVEELDVLAEQRVL
                     DMACAPGGKTTYLAQKMNNNGVLIALDPSRKRIRSTFFNLMRCGVRNTLVYQMDATNV
                     FRLGIRYDRVLLDAPCSCEGVISKDRSLLDNHYPGLINKCAERQRALIRAAIKVTKPG
                     GLIVYSTCTFAPEENEIAINSILDSYDNIEIEPVAIGENGLTTFGRFTLNSSLKDTKR
                     LYPHIHGTLGFYIAKLRVKNVSL"
     gene            complement(1647..1930)
                     /gene="rnpB"
                     /locus_tag="VNB68_05670"
     ncRNA           complement(1647..1930)
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="VNB68_05670"
                     /product="RNase P RNA component"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00373"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="archaeal type; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00373"
     gene            complement(2032..>2407)
                     /locus_tag="VNB68_05675"
     CDS             complement(2032..>2407)
                     /locus_tag="VNB68_05675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type II glyceraldehyde-3-phosphate
                     dehydrogenase"
                     /protein_id="HVD36871.1"
                     /translation="QMTVRFKSAAPDKESFLDIYEKEFGVAILSNARGTGDIRKKAID
                     LGFEHGDTNMVHIHSDTIRTQDDTLKLLYSDDQTGMVIPENYLLFQSMLYGRPARDAY
                     RRTDAIFHIDKKRKTLEEEFKA"
BASE COUNT          669 a          503 c          426 g          809 t
ORIGIN      
        1 ttacaacggt taagtaatat aataattaag caacttatta cctaatatat taagcaatgt
       61 agtaattaag taatgtagta attaagtaat ggtttagaca tctaaatctt cctctctaag
      121 atactgacca atatccgcaa tagtagtaac agctatcttg cctttattcg caatatgatt
      181 tgatttattt cgtgttcttc caattccaat ggcctcgttg cgctgattta aaattatcac
      241 catctcgttc tcccgatgag tgttgtgttc aataatagaa tctacaaata cgtctctacc
      301 atagacaacc attgtttccc ccttggagtt cacttttatg gatggaaagt tcttaccttc
      361 tttcgcaatt atttgagaca tttgtataga cggcgagaac tgttttccca attcacctat
      421 aagcaaccct gcgtacagcg gttgcttgtc tgtcactata atttctgaag gtaaaaaaaa
      481 tatttgtttt ctgtcaacat tattggttct tacatagatt aacttatctt tgaaatattc
      541 aaatacatcc cattttgaaa atgctcgtct aagaacagtg cgctcatgga gtgaagtctt
      601 tctataaaga cacatttttt acccttaatt ttgcgatgta aaatcctaat gttccgtgta
      661 tatgaggata taatctcttt gtgtctttca gagacgaatt caaagtgaat cggccaaaag
      721 ttgtcaggcc attttcgcca atggctaccg gctcaatttc tatattgtca tagctgtcga
      781 gtatactatt tatagcaatt tcattctctt cgggcgcgaa cgtacaggta gaataaacta
      841 ttaaacctcc tggtttggta acctttatcg cagcacgaat taacgcacgc tgtctttcag
      901 cacacttatt tatcaatccg ggataatgat tatccagtag tgacctgtct tttgatatga
      961 caccctcaca actgcatggc gcatcaagta agacacgatc atacctgatt cctaaacgaa
     1021 aaacatttgt agcatccatt tgatagacga gtgtgttcct cacaccgcac cgcattaaat
     1081 taaagaatgt gcttctgatc ctttttctac ttggatcgag agcaatcaat acaccattgt
     1141 tattcatttt ctgggccaag tacgtagttt tgccacctgg cgcacatgcc atatcaagca
     1201 ctctttgttc agctaaaaca tctaattcct cgacagcgag acatgaactg agatcctgta
     1261 tgtaataata acccaaaaga tattcgattg tagagccaag agagaacttt tctcttgtaa
     1321 tttcaaaaac ttcaggaagg attgtctgtt ttatatcaaa tccaatagct aaaagccttt
     1381 caacaaggtc cttgacattc gtttttaatg tatttatcct gatgtatctt ctaggctttg
     1441 atgctagcgc ctctagcaac ttctgtgtgt cgggaatgat ctctataaat cttgaggtca
     1501 tccatgttgg ataaccatat ttctttgata attcaagaga tcggggtgaa tcacaaaata
     1561 gaaacggcaa taccatgctg aagacttgaa gtcctccatt ttaacttatt acaatacctt
     1621 gccaaggttg atcaatagaa aaaaacgtgt gctagccgta accctccttc tgttttagac
     1681 gggattccgc tcagcggccg acctgggcac atataggaat gtttcaccct gtttggcctt
     1741 gctccacccg ggtcgacggt ttcattccag catcagtatc ttcaggctat ttgccatcac
     1801 tatcatcttt gactgactgg atttcctttc tgtttcgttg cccgctgtct ccagctaatt
     1861 atcactaatt cgagtgccta ttatgaggga ggagtttcct ctctttcgag taacccgtgc
     1921 actagctcac gtgaataata aaaattaaac gttaaataaa tttgcttcct gtgcatgtac
     1981 cttgttgtaa taggtgattt gtgagtcaat aaatgtcgca gcgtatcttt cttaggcttt
     2041 gaattcttct tcaagtgtct ttcgtttttt atctatgtga aaaattgcgt ctgttcgacg
     2101 gtaagcatcg cgggcaggcc ttccatataa catggactga aaaagaaggt aattttcagg
     2161 gattaccatt cctgtctgat cgtcagaata tagaagtttc agtgtatcat cttgtgttct
     2221 gattgtgtcg gagtgaatat gtaccatatt agtatctccg tgttcaaatc caagatctat
     2281 tgctttttta cgaatgtctc cagtccctct tgcattacta aggatcgcga caccaaattc
     2341 tttctcgtag atgtccagaa atgattcctt atctggcgcg gcactcttga atctaactgt
     2401 catctga
//
LOCUS       DATLQL010000556         1103 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_494894, whole genome shotgun sequence.
ACCESSION   DATLQL010000556 DATLQL010000000
VERSION     DATLQL010000556.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1103)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1103)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1103
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_494894"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..554)
                     /gene="cobI"
                     /locus_tag="VNB68_05680"
     CDS             complement(<1..554)
                     /gene="cobI"
                     /locus_tag="VNB68_05680"
                     /EC_number="2.1.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030788 - precorrin-2
                     C20-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-2 C(20)-methyltransferase"
                     /protein_id="HVD36872.1"
                     /translation="MKLTCVGCGPGDPDLLTLKAVERIKDADTIFAPTSKLGKPSIAL
                     SIVRKYIIEESTSMVNLLFPMTKDKETLKLQWKSNADNIARAVLEGKRVVYLTVGDPS
                     LYSTWIYIHREIIENYKEIEVEIIPGIPSMVAFAATAKMSLAEGDQTLGIVPACYDVE
                     RIKRTAGSCDTVIFLKDGRYFDGV"
     gene            complement(742..>1103)
                     /locus_tag="VNB68_05685"
     CDS             complement(742..>1103)
                     /locus_tag="VNB68_05685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="precorrin-6Y C5,15-methyltransferase
                     (decarboxylating) subunit CbiT"
                     /protein_id="HVD36873.1"
                     /translation="IELTQRNLMKFGVKAELILSNAQDALPSLPLVDAIIIGGTNGEP
                     EEIIRQCTQHLKSKGRIVIDTILIETVFKVLTAIKKEKLTDMDITQVTISKSKTVSTG
                     TMLTARNPVTIISATKI"
BASE COUNT          300 a          230 c          195 g          378 t
ORIGIN      
        1 atcaccccat caaagtatcg tccgtcctta aggaaaatca ctgtatcgca ggaaccggct
       61 gtgcgtttta tcctttcaac atcataacaa gcaggtacta ttcctagtgt ctgatcgcct
      121 tctgcaaggc tcatttttgc agtagctgcg aatgcaacca tagagggtat ccccggtata
      181 atttcaactt cgatttcctt gtagttctcg attatctctc tatgaatata gatccaagtg
      241 ctatagagtg aaggatctcc tacagtcagg taaacaactc tttttccttc taaaactgca
      301 cgtgcaatgt tgtcagcgtt actcttccac tgtagcttaa gcgtttcctt atcctttgtc
      361 attggaaaca acaaatttac catcgaagta ctttcttcga ttatgtattt acgaactata
      421 gaaagagcaa tactaggctt gccgagttta gaagttggtg cgaagatagt atccgcatcc
      481 tttattcgct cgactgcctt tagtgtaagg agatcagggt ctccaggacc acatcccaca
      541 cacgttaatt tcattacccg aattcataat taatgcgtta tttaaattcg aggatcttga
      601 tgctgaaatc accgcatacg ttgcgtacga tgaaatttat attctagttc aaattggtga
      661 tgagcaagat attatcaaag cgatatacct atgaatcggc ttattatttg aattattgtt
      721 aatattagat aataatattg gttagatttt tgttgcagat attatcgtta caggatttct
      781 tgcagttaac atcgttcctg tactcacggt cttagatttg cttatggtta cttgtgtaat
      841 gtccatatct gtcaatttct ccttttttat agctgttaat actttaaaga cagtttcgat
      901 caaaattgtg tcaatcacaa tcctaccctt actctttaaa tgctgagtac actgtctaat
      961 gatctcttca ggctcaccat ttgtacctcc gatgataatt gcatctacga gcggaagcga
     1021 gggcagtgca tcttgggcat ttgagagtat caactcggcc tttaccccaa atttcattaa
     1081 atttctctgc gtcaattcta ttg
//
LOCUS       DATLQL010000557         1053 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1913274, whole genome shotgun sequence.
ACCESSION   DATLQL010000557 DATLQL010000000
VERSION     DATLQL010000557.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1053)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1053)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1053
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1913274"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..292
                     /locus_tag="VNB68_05690"
     CDS             <1..292
                     /locus_tag="VNB68_05690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36874.1"
                     /translation="DAIKNGAIKTPSWPLYFFITTNDVKKSFDLTMKKSEAYLNEAKL
                     TLDMLPQDFDYKPFLEFLFLTVSHYNQYWYNDLNRRDLYPLLHKNLSLPFKM"
     gene            354..>1053
                     /locus_tag="VNB68_05695"
     CDS             354..>1053
                     /locus_tag="VNB68_05695"
                     /inference="COORDINATES: protein motif:HMM:NF012234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HVD36875.1"
                     /translation="MMWSDVYRPARIEDMVGNEEARMDVVKWLLKWIDGTKPLFLIGP
                     PGVGKTTIVKAMANQLNYDLIEMNASDTRNKNILTETILPILRNRSLIAEKTMLFLDE
                     VDGISARQDVGGIESLIALIKEPTVPIIMAANKKDTKLKAQIKLCKVVEFDRVHPSLL
                     LLYLNHVLQQENKKMDFKEKTNVMRNANGDIRSLLNVAQSKISGYDSTRDFSVGIDIS
                     DAVTDFFSSLTVEGA"
BASE COUNT          346 a          194 c          214 g          299 t
ORIGIN      
        1 ggatgccata aaaaatggtg caataaaaac gccttcttgg cccttgtatt tttttattac
       61 cactaatgat gtaaaaaagt catttgatct gacaatgaaa aaaagtgaag cctatctgaa
      121 cgaagccaag ttgacattag acatgttgcc tcaagatttt gactataaac catttttaga
      181 attcctgttt ttaaccgtca gtcattataa ccaatactgg tacaacgatc ttaacagaag
      241 agatctctat cctctactac acaaaaatct cagcttgcca tttaaaatgt agaacctgtg
      301 gttaggtcaa gtttcttctc aatagttgta acaccgatta gtgaaatatc ttcatgatgt
      361 ggtctgatgt ctaccgacct gccaggatag aagatatggt tggtaacgag gaggctagga
      421 tggacgttgt aaagtggctt ttgaaatgga tcgacggtac gaagccctta tttctcatcg
      481 gtcctccggg agtaggtaag accacgatag taaaggcaat ggcaaatcaa ttaaattatg
      541 acctaattga aatgaatgcg agcgacactc gaaacaagaa tattctcaca gaaacaattc
      601 tccccatact cagaaacagg tccttgatcg cagagaaaac tatgctgttt ttggacgagg
      661 ttgatgggat ttctgctcgg caagatgttg gtggaataga gtctctaata gcgctcatca
      721 aagagccaac tgttcctata attatggccg ctaacaaaaa ggacactaag ctgaaagcgc
      781 aaatcaagtt atgcaaagtg gtagaatttg atagagtaca tccaagttta ctactgcttt
      841 atctcaatca tgttctgcaa caagagaaca agaaaatgga tttcaaagaa aaaaccaatg
      901 tcatgagaaa cgctaatgga gatatcagat cgttattaaa cgtcgctcaa tcaaagattt
      961 caggttatga ttcgacgcga gacttttctg ttggaattga tatatctgac gcggtcaccg
     1021 attttttttc atctcttacg gttgaagggg caa
//
LOCUS       DATLQL010000558         1135 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2450789, whole genome shotgun sequence.
ACCESSION   DATLQL010000558 DATLQL010000000
VERSION     DATLQL010000558.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1135)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1135)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1135
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2450789"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1125)
                     /locus_tag="VNB68_05700"
     CDS             complement(<1..1125)
                     /locus_tag="VNB68_05700"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HVD36876.1"
                     /translation="MSKKDLLWHELIKKEKSYCTPELVESTHPLYILYTSGTTGKPKG
                     VLHSTGGYLTHIYATAKWVFDYKEEDIFLCTADIGWVTGHSYMVYAPLLHGVTNVIFE
                     GTPDFPTPDRYWALVEKHRATILYTTPTALRIYMKYDLSIPNSFDLSSLRLLGTVGEA
                     INPDVWLWYFRIIGKEKCPIVDTWWQTETGGIMISQCLGIDTIAMKPGSATFPVPGVD
                     IGIVDENGIDVNPDNKGYLVIKRPWPGMLMTLWNNDDKYINTYWNKFQGFYYSGDFAL
                     IDPDNYIWLLGRSDDVLKIAGHRLGSMELESAFVAFKAIAEAAVISKPDKEKGEAIVA
                     FLVLKSGYIESPELKTDLVNHIRKTVGPIAAPNEIHFTNKL"
BASE COUNT          310 a          243 c          209 g          373 t
ORIGIN      
        1 caatttattg gtaaaatgta tttcattcgg agcagcaatt ggtccaactg tctttcgaat
       61 atgattgaca agatccgttt ttaattctgg agattctatg tatccactct taagaactag
      121 gaatgcgact attgcctccc ctttttcctt atcaggttta ctgattacag ctgcttcggc
      181 tatagctttg aatgctacaa atgcgctctc taattccata ctgcctagtc gatgtccagc
      241 aattttgagt acgtcatcag accttcctag taaccagata tagttatccg ggtctatgag
      301 tgcaaaatca cctgaataat aaaatccttg aaatttgttc cagtatgtat taatatattt
      361 atcatcgttg ttccatagtg tcattaacat acctggccat ggtcttttga tgaccaaata
      421 acctttatta tcggggttta catcgatccc attttcatcg actatcccaa tgtctactcc
      481 tggaactgga aaagttgcgg accccggttt catggcaatt gtatcaatgc ccaggcattg
      541 acttatcata attccgcctg tttcagtctg ccaccatgtg tcaacgattg gacatttttc
      601 ttttccaata attctaaaat accataacca cacatcaggg tttattgctt cacctactgt
      661 gcctaaaaga cgcaatgatg ataaatcaaa actattaggg attgacaagt cgtatttcat
      721 gtatatacgc aatgctgtag gggtggtgta tagaattgtg gctctatgtt tttcgactag
      781 tgcccaatat ctatcggggg tagggaaatc aggagttccc tcaaagataa cattcgtcac
      841 tccatgtaat agaggtgcgt agaccatgta actatgtccc gtgacccatc cgatatctgc
      901 agtgcataaa aaaatgtcct cttctttata atcaaaaacc cattttgccg ttgcatagat
      961 atgtgtaaga tatccgccgg tactatgcag cacacccttt ggttttccag tggtgcccga
     1021 agtatacaag atgtaaagag ggtgagtact ttcgacaagt tcaggcgtgc agtaggactt
     1081 ttcttttttg atcagctcgt gccacaaaag atctttttta ctcattttca tctca
//
LOCUS       DATLQL010000559         1056 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_315417, whole genome shotgun sequence.
ACCESSION   DATLQL010000559 DATLQL010000000
VERSION     DATLQL010000559.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1056)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1056)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1056
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_315417"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(202..969)
                     /locus_tag="VNB68_05705"
     CDS             complement(202..969)
                     /locus_tag="VNB68_05705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36877.1"
                     /translation="MAYMLLAEEILLIASSSLAGVLSAIALGRISKIKKSSSAKNREK
                     LMKTSDAAKSELQLLVFEKSLASEAIAHSYEAAQKRKIDLAERNKLLLKYRQQISFYN
                     KKIEELQSVADLVELSQGRDRLVSLIETKITAIDSKLFELSQRLGISLEAFKRHQTNF
                     VKEESLPHDLATPSDVTVKTSTPKDAQIASRSIERSIGDMQEEVIKALAGLEKASSDD
                     YRVFEPKTGETISGTTPVAINMKRDALANLYSSQIEV"
BASE COUNT          303 a          218 c          190 g          345 t
ORIGIN      
        1 gtcagagcat cagcaatcat caaatcacgt acgctaaggt tactattggc ataaagcaca
       61 aaagcacaac taatttttag atactgataa aagattcttc aaagatccat taattgtaca
      121 agaacaataa tactggtaat atgacatcaa agttctgttc acaaatccag gcgagacaat
      181 tctctaaatg gttcattaat cttaaacttc tatttgcgag ctgtacaaat tcgctaaagc
      241 gtccctcttc atatttatag ctacaggggt tgttccagat attgtttccc ctgtcttggg
      301 ttcaaaaacg cggtaatcat cactactagc tttctctaac ccagctaatg ccttaatgac
      361 ttcttcttgc atgtcgccta tacttctttc tatacttcga cttgcgatct gtgcatcctt
      421 aggagtagat gttttcactg tgacatctga cggtgttgct agatcatgag ggaggctttc
      481 ttccttaaca aaatttgtct gatgtctttt gaaggcctcc aaagatattc cgagtcgctg
      541 tgagagttcg aatagcttgg aatctatagc cgtaatcttc gtttctatta acgaaacaag
      601 cctgtcacgt ccctgggaaa gttcgactaa atcagccact gattgcaatt cttcaatttt
      661 tttgttataa aagctaattt gttgccgata ttttaacaat aacttgttac gttcagccag
      721 atcaatttta cgtttttgag ctgcctcata agaatgtgca atggcttcgg aggctagact
      781 tttttcaaag actaataact gaagctcgga ctttgcagca tccgatgttt tcattaactt
      841 ttctcggttc ttggcggatg aacttttttt aattttagag atccttccaa gagctatcgc
      901 tgataggaca ccagccaggg aagaactcgc tatcagaagg atttcttcag ccaatagcat
      961 atatgccatg ataaaggcgc catccaaaca gttaagtctt tttactgaat ttactgcttg
     1021 gaagaaagtt tggatccaga attcctaaat cctaga
//
LOCUS       DATLQL010000560         1829 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2450900, whole genome shotgun sequence.
ACCESSION   DATLQL010000560 DATLQL010000000
VERSION     DATLQL010000560.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1829)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1829)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1829
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2450900"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            200..814
                     /locus_tag="VNB68_05710"
     CDS             200..814
                     /locus_tag="VNB68_05710"
                     /inference="COORDINATES: protein motif:HMM:NF012464.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HVD36878.1"
                     /translation="MKYALAYLRVSTEEQSVINQKLALQRWSDEQGYQIIDFFEDAAV
                     SGKIPAVQRRSFQDMLELIKSASVDAVLVYELSRVGRTFWDTLDAIKAIEEFAPLISC
                     SPRETFLQTTEPSVRKLMIGILTWVAEREREMLVQRTRDGMARARATGKDIGRPQKVI
                     DRDHLIKLLLDNMPRTKIAKHLGVSKATLYKVLRQIPHNNLHRS"
     gene            complement(800..>1829)
                     /locus_tag="VNB68_05715"
     CDS             complement(800..>1829)
                     /locus_tag="VNB68_05715"
                     /inference="COORDINATES: protein motif:HMM:NF012428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HVD36879.1"
                     /translation="KVFYSDNGSTAIEIGLKIAFQYWRNKGIRNRTKFISLKNGYHGD
                     TIGAMSVGYIRDFFSPYEPMLKKVLKVPSPSLSSCKHYDANEDTEACLQETEDLLLKN
                     SSRCCALIMESGAQIANRARIYPKKYQKKISDLCKKYDVLLILDEIATGFGRLGNMVE
                     YLAQDSFPDIVCFGKALTAGYCPLAVTLVTEELFTAFLGEYGQARQFYHGHTFTGHPL
                     ACAAALANLDAYKKYNLMNQIDSNSRYLSTRLKAIQGLSVVKDIRHKGLLAGIDLAID
                     GKPIKFLKNKHPVSYYIMSESLKMGVFLRPLGNTILIIPPLAINRKDFKFLMDVIYRI
                     SDKILTAV"
BASE COUNT          549 a          367 c          353 g          560 t
ORIGIN      
        1 gaatttaggc tgaaacgatt ttcgttacaa tttcatttag agaagtatgt tcataaaccg
       61 accctttttt agaccgtact taaattacct ccctttattt acctataaaa ttgctcaata
      121 tgtatcagta ccctttttga acacttactc gtatcttatt gacaccaagg tagttaagtg
      181 atgcacaaac agacatatcg tgaaatatgc attagcctat ctgcgcgtaa gtaccgaaga
      241 acagtcagtt ataaatcaaa aactggcttt gcaaaggtgg tctgatgaac aaggttacca
      301 aatcatagac ttttttgaag atgcggctgt tagtggcaaa attcccgccg tgcaaagacg
      361 ctcctttcaa gatatgctcg aactgataaa atctgcatcg gttgatgccg ttttagtata
      421 tgagctgtca cgagtgggaa ggacattctg ggataccctt gatgctataa aagcgatcga
      481 ggaatttgct ccgcttatct catgttcacc tagagaaact ttcttacaaa ctactgagcc
      541 tagcgtaagg aaattgatga ttggaatatt aacatgggtt gcagagagag aacgcgaaat
      601 gctggtccag aggacaaggg atggaatggc gcgagcaaga gcaaccggca aagatatagg
      661 aagaccacaa aaggtaatag acagggatca tttgattaaa ctgcttttag acaacatgcc
      721 ccgcacaaaa atcgcaaaac atttaggagt atccaaagca actctgtata aagtgctccg
      781 gcaaatcccc cacaacaatt tacaccgcag ttaggatttt gtctgatatt cgatagatta
      841 cgtccattag gaatttaaaa tctttccggt tgattgccaa aggtggaatg attaagattg
      901 tattacccaa tggtctaagg aagactccca ttttcaatga ttcactcata atgtaataac
      961 tcactggatg tttatttttt aggaatttta tgggctttcc atctattgcc aaatctattc
     1021 cggccaagag tcccttatgt ctaatatctt taactaccga taagccctga atagctttca
     1081 atcttgtgct caaatatctg ctgtttgaat caatctgatt cataaggtta tattttttat
     1141 aggcgtccag gttcgccaaa gcagccgcac atgcaagagg atgtcctgta aaagtatgcc
     1201 catgatagaa ctgcctggcc tgaccatatt cgcctaaaaa tgcagtgaat agttcttctg
     1261 ttactaaagt cactgccaag ggacagtatc ctgcagttaa tgcttttcca aaacagacaa
     1321 tatctgggaa cgagtcctgt gctaaatact ccaccatgtt tcctagcctt ccgaatcctg
     1381 ttgcaatttc atcaaggatt aaaagaacat catatttttt gcagaggtca gaaatttttt
     1441 tttggtactt ttttgggtaa atcctggcgc gatttgcaat ctgtgctcca ctttccatta
     1501 tcagtgcaca acatcgtgag ctattcttta acaaaagatc ttccgtttct tgtagacagg
     1561 cttctgtatc ttcattggca tcatagtgtt tgcaggaact caatgaaggg gatggaacct
     1621 taagtacttt ttttagcata ggttcataag gactaaaaaa atctctaata tagcctaccg
     1681 acattgctcc gattgtgtcg ccgtgatatc catttttcag tgagataaat ttcgtccggt
     1741 ttcgtattcc tttatttcgc caatattgaa atgcaatttt caggccaatt tcaatcgcgg
     1801 tagagccgtt gtcagaatag aaaacctta
//
LOCUS       DATLQL010000561         1228 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_137671, whole genome shotgun sequence.
ACCESSION   DATLQL010000561 DATLQL010000000
VERSION     DATLQL010000561.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1228)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1228)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1228
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_137671"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1206
                     /locus_tag="VNB68_05720"
     CDS             <1..1206
                     /locus_tag="VNB68_05720"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HVD36880.1"
                     /translation="HPTSMVFLGQDDFLVLEKDKGTVQRVSNGTIHDQPLLDLNVDNE
                     GERGMLGISTMKSSDGRTFVFIYYTKSSKDGGDTRYTGIPVGNVLYKYEFVGGRLINP
                     KILFDFPESRHSAHNGGKILTGPDDNLYLVVGDGDSCVDRSQKINGKYVCSDANLDYI
                     LNSQSSNVINGVRPFGKGGILRMTVDGKAVGEGLLGQDNPLNMYYAYGIRNSFGIAFD
                     PLTGNLWDTENGPGFGDEINLVVPGFNSGWLKVQGFWPVFTYNPVPIKKGYFNNTSNN
                     ITRDLVDFDGRGTYRDPKFAWNITVGPTALTFLNSAKWGGHYENDLFVGDINKGRIYH
                     FDLNENRTELVLEGDLKDKVANNNKESRDAIFAGGFGGITDIQVGPDGNLYVLSYPYG
                     KIFRIVSVE"
BASE COUNT          406 a          202 c          275 g          345 t
ORIGIN      
        1 catcccacga gcatggtatt tttaggccaa gatgactttt tagttttaga aaaagacaaa
       61 ggaacagttc aaagagttag caatgggact atccatgatc agccattact cgatttgaat
      121 gtggacaatg agggtgaaag gggaatgcta ggcatcagta ccatgaagtc ctcagatgga
      181 cgaacatttg tatttattta ttatactaaa tcatcaaaag atggtggcga tactagatac
      241 accggaatac ctgttggaaa tgtactctat aagtatgaat tcgtaggcgg cagactgata
      301 aatccaaaaa ttctatttga ttttccagaa agcagacatt ctgcacataa tggtgggaag
      361 atcctaacgg gcccagacga taacttatat ctcgtagttg gtgacggcga tagctgcgta
      421 gacaggtcac aaaaaatcaa tggaaaatat gtatgttctg atgccaattt agattacatt
      481 ctgaattctc aaagctcaaa tgtaattaat ggagtccgtc cttttgggaa gggtggtata
      541 cttagaatga ctgtagatgg taaggcagta ggagaaggat tacttggtca ggataatccg
      601 cttaacatgt attacgctta cggaattcga aacagttttg ggatagcctt tgatcctctc
      661 actggtaatc tctgggacac tgaaaacgga ccaggatttg gtgacgagat aaatcttgta
      721 gtaccaggct ttaatagtgg atggctcaag gtccagggat tctggccagt ttttacctat
      781 aatccagtac ctattaaaaa aggatatttc aataacacgt caaacaacat tactcgtgat
      841 ctagtagact ttgatggaag gggaacttat agagatccaa aatttgcatg gaatattacc
      901 gttggaccaa ccgctttgac atttcttaac tctgctaaat ggggaggtca ttatgaaaac
      961 gatctttttg taggtgacat aaataaggga cgaatatacc atttcgacct taacgaaaac
     1021 agaacagaac tggtcctgga aggtgactta aaggataagg tggccaataa caataaagaa
     1081 tcacgagatg cgatttttgc aggaggattt ggaggaataa ccgatatcca agtgggccct
     1141 gatggaaacc tatatgtatt gtcttatcca tatggtaaga tctttagaat agtatcagtt
     1201 gaataatgat ctaaaaaatt gccatata
//
LOCUS       DATLQL010000562         1101 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1736090, whole genome shotgun sequence.
ACCESSION   DATLQL010000562 DATLQL010000000
VERSION     DATLQL010000562.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1101)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1101)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1101
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1736090"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..283)
                     /locus_tag="VNB68_05725"
     CDS             complement(<1..283)
                     /locus_tag="VNB68_05725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36881.1"
                     /translation="MCALWSNGFIFHPVYAPPPIGIESVQVFKNLNLLQGQKSSINVM
                     CPQGMIATGGGYTTGGLPNVEVTIAAPSGPVNGPATSYLFGAHNKNTNTN"
     gene            complement(445..906)
                     /locus_tag="VNB68_05730"
     CDS             complement(445..906)
                     /locus_tag="VNB68_05730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36882.1"
                     /translation="MSEIGLVEIFSMAEAAALIATLFVIVYYSKKQAQSLSVDIETKV
                     LNDLAQRMHAQVEILVERPELTKVLSKVDAESPEMAYAYDILFTFAHAFHMRQRKVLN
                     DNEWTGWVRWYKSAFNQGSLMEIWQKTIEMEKWFDPAFHDFINREIVSVTR"
BASE COUNT          312 a          257 c          188 g          344 t
ORIGIN      
        1 cgttagtatt cgtatttttg ttgtgagcgc caaacagata actggttgct ggtccgttaa
       61 caggtccgct tggagcggct atcgtcacct ccacattagg gagaccaccc gtagtatatc
      121 cacctcctgt tgctatcatt ccttgcgggc acattacatt aatagaactt ttttgtcctt
      181 gcaataaatt taggttcttg aatacctgaa cactttctat tcctattggg ggaggcgcat
      241 aaacaggatg aaaaataaaa ccatttgacc acagcgcaca cacctcccaa tctttcccct
      301 gagctttcca tccatatctt cggctttgtc ggcaattatt acactattac ggaaattaca
      361 caaatatgga gagtatcacc cgctatatgc ataacaggat tctaccaaag aatctatctg
      421 ctatctttct tattcagttc gatcctagcg agtcacagaa acaatttctc tatttatgaa
      481 atcatggaat gctggatcaa accatttttc catttcaata gtcttttgcc atatttccat
      541 taaagaccct tggttgaagg cacttttata ccaacgaacc caaccagtcc attcattgtc
      601 gtttaatact tttctctgac gcatatgaaa tgcatgtgca aacgtaaata aaatatcata
      661 agcatatgcc atctctggtg actccgcatc taccttactt agaacctttg tcaactccgg
      721 gcgttcaact aaaatctcga cttgagcgtg cattctttgc gccaaatcat tcaggacctt
      781 agtttctatg tctactgaca ggctctgtgc ttgttttttg gagtaataca cgataacgaa
      841 cagcgttgcg attaatgcgg ccgcttctgc catactgaat atttctacta aaccaatttc
      901 ggacattatt gattaatgaa aaatcgctat acaaattcat ttccggggtg aagtaattca
      961 agattgatta agatggcttg aagtctagac tcttggcaga cttggccgcc ttcggacggt
     1021 taaacaaatc atctactggc caatactgat attcgcgcaa cctttcccat gaccaattta
     1081 caaacttatc gtacgaaaat a
//
LOCUS       DATLQL010000563         1355 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2271571, whole genome shotgun sequence.
ACCESSION   DATLQL010000563 DATLQL010000000
VERSION     DATLQL010000563.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1355)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1355)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1355
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2271571"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..192)
                     /locus_tag="VNB68_05735"
     CDS             complement(<1..192)
                     /locus_tag="VNB68_05735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron transporter"
                     /protein_id="HVD36883.1"
                     /translation="MKTCLKCGKQFDENAIEDSDSAKYPSCNSCWKEWTTYAVIVINE
                     MRLDMSLPEHRKALRKYERI"
     gene            621..1205
                     /locus_tag="VNB68_05740"
     CDS             621..1205
                     /locus_tag="VNB68_05740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase"
                     /protein_id="HVD36884.1"
                     /translation="MSIGITCPQRPFYERDTSVVARDLVGKKLVRLLAGNSGDQERLV
                     GIITETEAYGGEDDPASHAFRGSTLRNSIMFERGGLSYVYFIYGMYHCMNVSARSKTK
                     KAGAVLIRSILPIEGINKMVIHRNSKNIGDLANGPGKLTRALLIDRSHNGLDLTDSAC
                     SLHIENGKTPRRILAAPRIGISVATEMNWRFKLP"
BASE COUNT          409 a          239 c          283 g          424 t
ORIGIN      
        1 tattcgctcg tatttccgta atgccttcct atgttcagga agggacatgt ccaaacgcat
       61 ctcattgatc acgataacag cataagtagt ccattctttc caacatgaat tacatgatgg
      121 atactttgcc gaatcagaat cttcaattgc attctcgtca aactgttttc cacatttgag
      181 acaggttttc atgtaattag atttgacgca aggatatttt attgtttaat caagaaggga
      241 ataatgaaac gttgcacaag ggttggagaa catttgtatt gtatgtcaga ttctttttga
      301 gtatcgatga tttgcccaaa tatgttttcg catttgttcc atgccgctta ttttcacatt
      361 gcattgtttg cattcataca tttcatcttc atgcactatc tgaaaatgat gcatgtagtt
      421 ctcaattttc gcaaatcgtt tcccacattt ttcacaaaca atcctcctga ggagattcaa
      481 attggagagg cgtaaaatgt cagaaagggc tttcctcatc agaaagtgac atctccataa
      541 tgtctctatt atcctagtac tattcaaggg tagtggagga cggtttatat tttgtaagta
      601 gtttacctat cttagattct ttgtcgatcg gtattacatg tcctcaaaga ccattttatg
      661 aacgtgatac ttcagtagtt gcaagagatc ttgtcgggaa aaaattagtg aggctcctgg
      721 cagggaattc tggagatcaa gaaaggcttg taggcataat aacggaaact gaagcatacg
      781 gaggagagga cgatcctgca agtcatgcat ttcgtgggtc caccctacgc aattcaataa
      841 tgtttgaaag aggtggcttg tcatacgtat acttcattta tggcatgtat cattgcatga
      901 atgtgtccgc tcgctcaaaa actaagaaag caggtgcggt attgattcgt tcaatattgc
      961 ccatagaagg cataaacaag atggtgatac atagaaattc aaagaatatt ggggatctgg
     1021 caaatggacc aggtaaactg actagggctc ttcttattga tagatcacat aacggtttgg
     1081 atctgaccga ttccgcatgc tcattgcata tagagaatgg taaaacccca agaagaatat
     1141 tggctgctcc gagaataggt atatcagtag caacagagat gaactggaga ttcaaattgc
     1201 cgtaaatatt tgctctttac tagtgacagg atactaggct atcaagttat acaaaattgg
     1261 ttcaataact ttggaactcg taaagaatga tatcgaatca atgctgttcc ttgaagtaat
     1321 atgaggcaat ttaggtaagg cttggcatgg atgtt
//
LOCUS       DATLQL010000564         1367 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_672233, whole genome shotgun sequence.
ACCESSION   DATLQL010000564 DATLQL010000000
VERSION     DATLQL010000564.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1367)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1367)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1367
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_672233"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..269
                     /locus_tag="VNB68_05745"
     CDS             <1..269
                     /locus_tag="VNB68_05745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36885.1"
                     /translation="ILVNQAPKVQAIQLHLIEEMSTAGKMCIYHADLEPTSRVVHTGP
                     EVTIGTITDIAIQNPTNKTIKFPPTSTMVIGVNEIEPGAGEIEH"
     gene            620..>1367
                     /locus_tag="VNB68_05750"
     CDS             620..>1367
                     /locus_tag="VNB68_05750"
                     /inference="COORDINATES: protein motif:HMM:NF012956.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="discoidin domain-containing protein"
                     /protein_id="HVD36886.1"
                     /translation="MLKNVTVSYPQRFFGLFLVAVLFISSSGIGLAFSASPSSTNIES
                     CNETQILGVSASASDTNFPASGVLDSNPQTFWSTYGKGAWLQLDLGKVNTVCSLDIAW
                     YKGNQRNVNFIISVSKDGSTYKNVFDSKSSGTTTSFERYDLQDSSARYIKITVNGNTQ
                     NNYATIADLRVNTAGLENINPVEQPNVSSGSADQCTKAKISKVTASGHYKNDVTSNAI
                     DNNPQTRWSNQKKPSSITLDLGSSKTLCSVD"
BASE COUNT          453 a          258 c          253 g          403 t
ORIGIN      
        1 atattctagt aaatcaagct ccaaaagttc aggctataca acttcactta attgaggaga
       61 tgtctaccgc aggcaagatg tgcatctatc acgccgatct tgagcctact tccagagttg
      121 tccatactgg ccctgaagta acaataggaa ctattactga catagcaatt cagaatccga
      181 caaataaaac tatcaaattt cctccaacta gcactatggt cataggtgtg aatgagatag
      241 agcctggtgc tggagagatt gagcattgag gctagaatat cgccatgact aaataactaa
      301 atttgtgtta catgagatag cgttactaac aagaggatag ttcttattca ataacttttc
      361 attgtaatta ttgacacttg tgtgtgcagt aacgtattac aaataactaa ggcagacaat
      421 tatcttcaag aatgttagaa tcttagacta ttacaaacaa tgccttcgta taagtataag
      481 gtaattattt tctagtatga attcgattga atttaaaaga aatttgttcg tatatattga
      541 atatttcctc acaattgaga gtgttcattt ttctcaattt cttctcaaat tacactcccg
      601 ttacaaatag gacaagatta tgttgaaaaa tgtaactgtt agctatccac agagattctt
      661 cggattattc ctagttgcag tattattcat ttcatcatca ggtattggat tggccttctc
      721 tgcgtcacca tcttcgacta atatagaatc ttgtaatgaa actcaaatcc ttggagtgtc
      781 agcaagtgca tcggatacga acttccctgc ctctggggtc ttggattcga atccacaaac
      841 attctggtct acatacggca aaggcgcgtg gctacaattg gatcttggca aggtaaacac
      901 tgtatgtagt ttggatatag catggtataa agggaatcag agaaatgtca attttattat
      961 ttcagtttca aaagatgggt caacttacaa gaatgttttt gattcaaaaa gcagtggaac
     1021 gacaacatca tttgaaagat atgatctcca agattcgtct gcaagataca taaagattac
     1081 tgttaatggt aatactcaga ataactatgc aactatagcc gaccttagag tgaacaccgc
     1141 gggtcttgaa aatataaatc ccgttgaaca accaaatgta tccagcggat cagcagatca
     1201 gtgtaccaaa gccaagattt ccaaggtcac cgcctctgga cactataaga atgatgtgac
     1261 ttccaatgca atagacaata atccacagac gagatggtcc aaccagaaaa agccctcctc
     1321 gattaccttg gatctgggat cttcaaaaac attatgcagt gtagaca
//
LOCUS       DATLQL010000565         1532 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_497049, whole genome shotgun sequence.
ACCESSION   DATLQL010000565 DATLQL010000000
VERSION     DATLQL010000565.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1532)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1532)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1532
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_497049"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
BASE COUNT          464 a          319 c          316 g          433 t
ORIGIN      
        1 ttaaaagatt tagggaactt taactctaga ggtcaatagt ctatataaac ctcttaagtc
       61 tagttctacc aattgctaaa tttccacccc taggctagaa tcctggaaaa acgtgtttag
      121 ggacctccag aactggtccg gaactgtact tcccgggggg gtttcttttg gggaaatcgt
      181 caaattttgc catctggggg gcatttcctg gaaaaaggcc tagaacggtc aagttggcct
      241 agaaacgtcg tttggacccc tatagacccc ccagaactgc catttcttgt cgtgaaacag
      301 cgccaaacta tcatcttttg gcccgggatg ccaaaaaacc cctatagacc cctatagacc
      361 cctagaatgg tcaatttccc gtttatggta ccttaagggg ggtaaagtag cctatctggg
      421 gtcactttgg cgcggcatac taatcaatag ctatatcggc gaggattggc ggtacccccg
      481 atcggtatcc cctgtcactc caataggatt ttgaatacat atattgagac cgagggacgg
      541 ttgggaggtc ccagataggg taaattttgc gttcttggcg ttttttttgc ctagaggacc
      601 aatattctac taggattcct aaaagtttgt aaggatactg taaggcatgg taggaatcca
      661 taatgcatag ggggtctaat gatcacatgt tgctttaaat ttttttgcga aacaaagttg
      721 aagtagaaaa actttatagc ggtgatctaa actttaaagt tcgctggatg tctcaagtga
      781 aaaactttta taagtccgag aggatgtaat agaagttatt gatcgatgca gacatgactc
      841 ggcttcgaat gctttcgaaa tgaaagacgc gttgagtgca acggagcatg aacggaatag
      901 ttactggagt caaaaagatt tgacccgcaa ctatgaggtt tgtagctcgc ccaacatcgc
      961 taagaaaata aaaaagcaag aaggataaat aaaaaacaca aacaagttaa tgtatgataa
     1021 ttttgaaaat aaaattgaat taaatagatt ttttttttgt cgttccgaca tatgctcggt
     1081 ctcgttttgg tcgacactct ccacgcgttc cgccaaccgt ccacccacgt cctttcacta
     1141 gagtgaaaga tagctttccc atgcaaatat agagcaaatt ccaataggaa aacgtgcatt
     1201 ttgatgcata cccttcaaat agaaaacatt cgagggattc ctcgaaagtt accgtggacg
     1261 tttcaatttg cctagggtat tattctagac gctaaaggat tagctataga ggttccccga
     1321 acttaagtat ccgcgattgt tttaaaggac tatctaatcg ttagcactca ctctggatct
     1381 ataaactcta acacttcacg gttgacaaca tcataaaaag tccagcccct ttttaaagat
     1441 ttatgccaac tatccgcgat cactgcgcat cactataaat atttccaatc acatcgcaag
     1501 ctcgaattaa aaattttcac acgctcttta ca
//
LOCUS       DATLQL010000566         2104 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2451934, whole genome shotgun sequence.
ACCESSION   DATLQL010000566 DATLQL010000000
VERSION     DATLQL010000566.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2104)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2104)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2104
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2451934"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..452)
                     /locus_tag="VNB68_05755"
     CDS             complement(<1..452)
                     /locus_tag="VNB68_05755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36887.1"
                     /translation="MSNDSSDTSSGREKNNNPSHFMVLDAIARGIKEVDRIAEATRLL
                     REEVEIVVNDLSLQRLVTKEEKKRRFFGGKKIEIKITDTGMRMLNSKKQELQQEAEQL
                     TQWQRNGNTTQLQRYMDSDNNRSWIPFMLLSGIMNALFFTSMMSMMGMA"
     gene            993..1583
                     /locus_tag="VNB68_05760"
     CDS             993..1583
                     /locus_tag="VNB68_05760"
                     /EC_number="3.2.2.20"
                     /inference="COORDINATES: protein motif:HMM:NF015319.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008725 - DNA-3-methyladenine glycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HVD36888.1"
                     /translation="MCPSKFSHLKVRCEWAANGSPTDIEYHDNEWGVPVHGDRKLFEF
                     LLLESAQAGLNWSLILKKREGYRKAFDNFDANIVACYDQRRIQQLLSNPSIIRNRLKI
                     ESAIRNARAFIKVQQEFGSFDSYLWNFVDGKPKLNEWSNWMQVPSSTETSDKLSKDLK
                     KRGFVFVGSTTSYSIMQAVGLVNDHTINCFRYKDLI"
     gene            1772..>2104
                     /locus_tag="VNB68_05765"
     CDS             1772..>2104
                     /locus_tag="VNB68_05765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36889.1"
                     /translation="MTFQTITTTVLSKDGVVEYHTNVIPSGYFNSVLQNVAWKNDEVV
                     IFGKHITTKRQVAWYGEGDYTYSNTTKKPLAWTLELLGLKEIVESLAGTKFNSCLLNL
                     YHDGNEGIA"
BASE COUNT          646 a          385 c          384 g          689 t
ORIGIN      
        1 gccatcccca tcatagacat catagatgta aagaatagtg cattcataat accagataat
       61 aacataaatg gtatccatga tctgttgtta tcagaatcca tatacctttg tagttgggta
      121 gtgttgccat tcctctgcca ttgtgttaac tgttcagcct cttgctgtaa ctcttgcttc
      181 tttgagttta gcattctcat accggtgtca gttattttta tttctatttt tttgccacca
      241 aagaatcgcc tcttcttttc ctccttggtt actagtctct gtaacgatag atcatttaca
      301 acaatctcta cttcctctct tagtaatctt gtagcttctg ctattctgtc aacttcttta
      361 atgcccctag ctatagcatc taacaccatg aaatgacttg gattgttgtt tttttcgcgc
      421 ccagaacttg tatctgatga gtcattactc atgttactat tacgaccata cattatacct
      481 tgacgatatt aaatattgtg cattaaatag ttgcatcaat gggctacaac tactacctct
      541 aacttggtca tcattgttag agtcgtgggt gttattgttt tattgtgtga tgctactttc
      601 gtacaccaca ggtatatgtt agaaagcaga cattaatgtt gttatccatt ttcatatttt
      661 atcataaagt tcaaagccat ccatttctca ttttgatatc aaccagcaat agatcgtatg
      721 aaccaagttt aaaattctcc tacattgacg taggactttc aaatgtctgg acctcaaatc
      781 cattacctat caataaaaag ctaagttgag aaaaaatgtt aatgtatttg atgttcttgg
      841 caatgattgt agttgcactt tttttcatag tctgattctt tggattcttc attatttggc
      901 tttccattat cagtctcagt catgatactt tttatttcat ttccattaca aaacattaaa
      961 catcaagtgt aaccacattt attcacaaca gcatgtgtcc ctcaaaattt agtcatttga
     1021 aagttcgttg cgaatgggct gctaacggca gtccaactga tattgaatat catgacaacg
     1081 agtggggtgt tccagtccac ggcgatagga agctatttga gttcttgcta cttgaatcag
     1141 cccaagctgg cctaaattgg tcgcttatac tcaagaagcg agaaggatat aggaaagcat
     1201 ttgacaattt tgatgcaaat atagttgcct gttatgatca aaggaggatt caacagctac
     1261 tctctaatcc atctatcata agaaatagat tgaagataga gtctgctata aggaatgcga
     1321 gagcttttat aaaagtacaa caagaatttg ggagctttga ttcatatctt tggaatttcg
     1381 tcgatggaaa accgaaactt aacgagtggt ctaactggat gcaagttcct tcaagtactg
     1441 aaacatctga caaattaagc aaggatctaa agaaaagagg ctttgtattc gtaggatcta
     1501 cgacttctta ttctatcatg caggctgtgg gattggtaaa cgatcatact atcaattgtt
     1561 ttaggtataa agacctcata tgatgaaaga tttcagggga tcaccacgtg attgctatcc
     1621 ttcatattaa gtgactaaag caaaggtcga aacctagaat cccttgaagc tggtgaaggc
     1681 aagtcaagac atatgacaca caatggatta atagcacatc tttatacaca aactgcagaa
     1741 ggattataga aaagatgaag gtatccaagc tatgacgttt caaacaatta caaccacggt
     1801 cctatcaaaa gacggtgtgg tagaatatca tacaaacgta ataccttctg gatatttcaa
     1861 ttccgtatta caaaatgtag cgtggaaaaa tgatgaggtt gtaatctttg gtaaacatat
     1921 tactactaaa agacaggtcg catggtacgg cgaaggtgac tatacctact ctaatacaac
     1981 aaagaagcca ttggcttgga ctcttgaact attaggattg aaggagatag ttgagagttt
     2041 ggcaggtaca aaatttaatt cctgtctgct gaacttgtat catgatggga atgagggtat
     2101 agct
//
LOCUS       DATLQL010000567         1372 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1026924, whole genome shotgun sequence.
ACCESSION   DATLQL010000567 DATLQL010000000
VERSION     DATLQL010000567.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1372)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1372)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1372
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1026924"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..896
                     /locus_tag="VNB68_05770"
     CDS             <1..896
                     /locus_tag="VNB68_05770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HVD36890.1"
                     /translation="AMRSEKSIGRALLRLVKDGIISRDEVFVSTKNGYITNDGDYPEV
                     DVMEYMQRMFISNGLIRPDDISSGYNVLNPNYIKRCIDKSLANMHLTTIDLVYIHNAF
                     ESWFEDISREEFVSMLSKVFEAYEEYRLMNKIRYYGMATWTCFRVRPDSREFLSLEDV
                     VKIAEKAAGAKKHGFRFIQLPFNLAYSEALLLRNQSVGPEKNLTILEAAEKLNIGIFT
                     SIPLFQGRLLKAKVPDYGGLTDQVSKLLQIIRSSPSVIAPLIGQKQPHHVEQNLRIST
                     ISPMDTQAYKEAVDVLLGGNL"
     gene            complement(1064..>1372)
                     /locus_tag="VNB68_05775"
     CDS             complement(1064..>1372)
                     /locus_tag="VNB68_05775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HVD36891.1"
                     /translation="TQNLWLVARAEGIGVGWVSIISNEDLHRSLSIPQDIRPIAYLCL
                     GYVNEFAEIPDLERAGWLPRLELSQVICYEQWRKISAAFKKDDTISDTRLTESSEAYP
                     "
BASE COUNT          426 a          245 c          294 g          407 t
ORIGIN      
        1 gggctatgag gtcagagaag agtattggta gagcactgct tcgtttggtt aaggatggaa
       61 taatctcaag ggatgaagtt tttgtcagca ctaagaatgg ctacataact aatgatggtg
      121 attatccaga agtagatgtc atggaatata tgcaacgaat gtttatatca aacggcttaa
      181 tccgtccgga tgacataagt tcgggttata atgttctaaa tccgaactat attaagcgtt
      241 gtatcgataa atccctggca aatatgcacc ttactacgat agacttggtt tacattcata
      301 atgcgtttga gagttggttc gaagacatta gcagggaaga atttgtaagt atgttatcaa
      361 aggtatttga agcatatgaa gaatatcgtt tgatgaacaa gatccggtat tatgggatgg
      421 caacatggac ctgctttaga gtacgtcctg atagcaggga atttctatca ttggaggatg
      481 ttgtcaaaat agcagaaaaa gctgcgggcg ctaaaaaaca cggattccga tttatccaac
      541 ttccatttaa cttggcttac agcgaagcgc ttttacttag aaatcaatct gtaggcccag
      601 aaaagaactt gacgattctg gaagctgcgg agaagctcaa tataggaata tttactagca
      661 tcccattgtt ccaaggaaga ttgctcaaag ctaaagttcc tgattacgga gggctgacag
      721 atcaagtaag taaattactt cagattatac gctcaagtcc ttccgttatt gcaccattga
      781 ttggtcaaaa gcaacctcat catgtcgaac aaaatctaag gatttcaacc atttctccta
      841 tggataccca agcatacaaa gaggctgttg acgttttgtt aggaggaaac ttatgattaa
      901 acgaatgagg tttccatgga aattggagta cggacttgct gatcaaccgc agaacattac
      961 atcctagggt ataataacgg ggcataaaga attagatttt tcatggttta tgatacctaa
     1021 taagtagtcg tttgctatag gtttggagaa ggttgaagtc ggactaagga tatgcttctg
     1081 aagactcggt tagcctagta tcgctaatag tatcatcttt cttgaaggca gcagagattt
     1141 ttcgccactg ttcataacat attacttgac tcagttctaa tctaggaagc caacctgctc
     1201 tttctaaatc aggtatttct gcaaattcat tgacgtaccc aagacacaga taggctattg
     1261 gccgaatgtc ttgaggtata gacaaacttc tgtgcaaatc ttcatttgaa attatactaa
     1321 cccatcctac tccgattcct tctgctctag ccactagcca tagattttga gt
//
LOCUS       DATLQL010000568         1221 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1915265, whole genome shotgun sequence.
ACCESSION   DATLQL010000568 DATLQL010000000
VERSION     DATLQL010000568.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1221)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1221)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1221
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1915265"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(130..1044)
                     /locus_tag="VNB68_05780"
     CDS             complement(130..1044)
                     /locus_tag="VNB68_05780"
                     /inference="COORDINATES: protein motif:HMM:NF014017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HVD36892.1"
                     /translation="MFNATNIACMDDMGQVLVGCSGWSYPDQPEKGGWTKVFYPTTET
                     KRLAYYSQFFNTAEMDSTFYEKFYTQMTKATFVGMARTTPDNFQFSVKVPETVTHVKR
                     LNVMAGAISALEEFLEKISPLKLANKLGAILIQLPPSFTVKDFKNTEEFLDRLPAGYD
                     YAVEFRHPSWETEGPWDMLKHYNIAAVMTDSPSLDRLQFLSEVIVTANHSFIRWHGRN
                     VHHRYNYLYSREELKPWVEKVKKIQLETAILRGYFNNHYGGKAVVNTLQFKEMIGDIL
                     SKEEKQVLKRAQKYLGQRDMKLSSFLER"
BASE COUNT          339 a          258 c          231 g          393 t
ORIGIN      
        1 tgaaagggag agttgaattt gccgggcaac tgtccttctg ttacaattag tgtacaccag
       61 tgcgacaaaa tgctgatttt gcgctttaac ctaccccaag tatacacata atcatagcag
      121 aatattcgtt taccgttcca ggaatgaaga caatttcatg tccctttgcc ctaagtattt
      181 ttgtgcacgc ttcaatactt gtttctcttc ctttgatagt atgtcgccaa tcatttcctt
      241 aaattgtaga gtattaacaa cagctttccc accatagtgg ttgttgaaat atcctctcag
      301 aattgcagtt tctaattgta ttttcttgac tttttcaacc cacggtttca attcctctct
      361 agagtaaaga taattgtatc tgtgatggac atttctgcca tgccatctaa taaaagagtg
      421 gttagctgtg acaataactt ccgatagaaa ttgcaacctg tctagcgagg gagaatctgt
      481 catgacagca gcgatgttat aatgcttgag catatcccaa ggtccttcag tttcccacga
      541 agggtgacga aactctacag cataatcata accagcaggt agtctatcta gaaattcctc
      601 cgtattctta aaatccttaa ctgtgaagct tggagggagc tgaatgagta tggcacccaa
      661 tttatttgcc aattttaaag gagatatttt ttccagaaac tcctcaaggg cagaaatggc
      721 gcctgccatt acattcaatc ttttgacatg tgttactgtt tccggtactt ttaccgaaaa
      781 ctgaaaatta tcaggcgttg ttcgtgccat ccccacgaaa gttgctttag tcatctgggt
      841 gtagaacttt tcataaaatg tggagtccat ttcagcagta ttaaaaaatt gtgaataata
      901 tgctagcctc tttgtttcgg tggttggata aaaaactttg gtccaacctc ctttttcagg
      961 ctggtcagga taactccaac cagaacaccc tacaagtact tgacccatgt cgtccataca
     1021 tgcgatatta gtcgcattaa acatatcgta atatcatggt tattggagct cctctaccgt
     1081 ctcgttgttt tagcacgcgt tatcccgcta gttaaaaata tattgtaacg ggcctttata
     1141 tgttccatcc tagatgccca tacttctcta atatccataa gaaagttggg gcacgcgggg
     1201 cgagattgaa tctgtatttg a
//
LOCUS       DATLQL010000569         1171 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1027707, whole genome shotgun sequence.
ACCESSION   DATLQL010000569 DATLQL010000000
VERSION     DATLQL010000569.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1171)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1171)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1171
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1027707"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..457
                     /locus_tag="VNB68_05785"
     CDS             <1..457
                     /locus_tag="VNB68_05785"
                     /inference="COORDINATES: protein motif:HMM:NF014820.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="thiolase family protein"
                     /protein_id="HVD36893.1"
                     /translation="NPVWFTGIGTHTESASFAKISEDLSSIHSAKIAANMAYKMAKIE
                     PKDIDLIELHDAFTIMEILAYEDLGLTKVGQGGKFVTENQVVINSRGGLLGTGHPIGA
                     TGVAQVAEISEQLSGSAGNRQVKEPCKIGLVHNLAAAGSSAVVVVMGTE"
     gene            581..817
                     /locus_tag="VNB68_05790"
     CDS             581..817
                     /locus_tag="VNB68_05790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36894.1"
                     /translation="MVKADSKGRIIEFSISHNKNSPSELTYGLIEISGVRLIGSIVGN
                     GIEANNSVLLRRCGLTESKNAFYEFLMDIKENTK"
     gene            954..>1171
                     /locus_tag="VNB68_05795"
     CDS             954..>1171
                     /locus_tag="VNB68_05795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36895.1"
                     /translation="MAYERFVDDRLLTSRDALNRTQIKIKLVEIDEAARDFSQRFGNR
                     VLVRKILLTMRLTQTEEIEEKELNIEEI"
BASE COUNT          416 a          192 c          264 g          299 t
ORIGIN      
        1 taatcccgtg tggtttactg gcataggcac acatactgag tcagccagct tcgctaaaat
       61 aagcgaagat ctttcctcaa tacattctgc aaagatcgcc gccaacatgg cttacaaaat
      121 ggctaagata gaaccaaaag atattgatct gattgaactc catgatgcgt tcactataat
      181 ggagatccta gcttacgaag acttaggact gacaaaagta ggacaaggag ggaaatttgt
      241 aactgaaaac caggttgtca ttaactcacg tgggggttta ctaggcactg gtcaccctat
      301 cggcgctact ggtgtagctc aggtagctga aatcagtgaa caacttagtg gatcagccgg
      361 aaatagacag gtaaaagagc catgtaagat tggtctggtg cataatcttg cagctgccgg
      421 gtcatccgca gtggttgttg tcatgggaac tgaataaatg aaggattttt tctattatct
      481 tcagagaggt caattaagaa ttccaacatg ttgcaactgt catcaaaaga tctggccacc
      541 aaaccaattc tgtagccagt gtttttctag acggattgac atggtaaagg ctgatagcaa
      601 gggaagaata atagaatttt caatatccca taacaaaaac agtccgtcgg aattgacgta
      661 cgggttaatc gaaatttcag gagtccgtct aatcggatct attgttggaa atggaattga
      721 agcaaacaat tcggttctgt tgcgacgctg tggattgaca gaaagcaaaa atgcatttta
      781 tgaatttctg atggacatta aagagaatac gaaatgatcg acgaaatcgt tgtatagcaa
      841 gctaaaaaat actaggaata agaagaaaac aacaaagttg tgttaaaatg aataattgga
      901 aataaaatgg ataaacgaat gattttatag catgatattg aaaagaattc aacttggctt
      961 acgaaagatt cgtagacgac aggcttctta caagcagaga tgctctgaat agaactcaga
     1021 taaagataaa attggtagaa attgatgagg cagcaaggga cttttcacaa cgatttggaa
     1081 atagggtgct tgttcgcaag atcctattaa ctatgaggct gacacaaaca gaagaaattg
     1141 aagaaaaaga attgaacatc gaagaaatag a
//
LOCUS       DATLQL010000570         1304 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1381998, whole genome shotgun sequence.
ACCESSION   DATLQL010000570 DATLQL010000000
VERSION     DATLQL010000570.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1304)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1304)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1304
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1381998"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(114..776)
                     /locus_tag="VNB68_05800"
     CDS             complement(114..776)
                     /locus_tag="VNB68_05800"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family cysteine hydrolase"
                     /protein_id="HVD36896.1"
                     /translation="MKIREYKINPALIVIDVQNGFVSKGGSYDLLKMDTSNYRAVIPV
                     IKELIEISRAAGIPVFYTQAVRESSGIDLLTKTHKILPKSREERIMRKPICVRGTWDA
                     GIVDDIKPAARDHIVIKRRDSAFHDTEINVWLKSLGIDTLIFSGIDTSICVETSLREA
                     FNIGYDIILISDATASSNRKHYESTLDNVRGYYGLVMELKEFYRYLPQTQANSIPSKS
                     KA"
     gene            950..1180
                     /locus_tag="VNB68_05805"
     CDS             950..1180
                     /locus_tag="VNB68_05805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36897.1"
                     /translation="MSVQAEEGAGSLFFELAGNLRLSMLMKLTLKAYRLSQLATELEA
                     TLQEAHRNMARLTDSGLVSKNSEGDLVLTPYG"
BASE COUNT          392 a          259 c          237 g          416 t
ORIGIN      
        1 tgcagaaaca tatcttccgc agaaactgag agcggctgga ctaatataac aataataaca
       61 atcataatat aagcacacat atagcgcctc tatcaagtcc taagaagtaa agttcatgct
      121 ttgctcttac ttggtattga attagcttgc gtctgaggaa gatacctgta aaattccttt
      181 agctccatta cgagtccata atagcctcga acgttatcca acgttgattc ataatgcttt
      241 ctgttgcttg atgctgttgc atcagaaata agtataatgt catatccaat attgaatgct
      301 tcccttaagg aggtctcgac gcaaattgag gtatctattc cagaaaagat cagggtatct
      361 atcccaaggc tttttagcca tacatttatt tctgtatcgt gaaaagctga atctctcctc
      421 tttataacga tgtgatccct ggccgcaggt ttgatatcat caacaattcc tgcgtcccat
      481 gttcctctaa cacaaatagg cttcctcatt atcctctctt ctcttgattt tggaagaatt
      541 ttatgggttt ttgtcaatag atcaattcca gacgattcgc gaacggcttg ggtataaaaa
      601 acaggaattc ctgcggccct agaaatttca attagttcct ttatgacagg gataacagct
      661 ctataatttg acgtatccat ctttaagaga tcatacgacc cacctttgct tacaaaacca
      721 ttttgaacgt caattactat cagagctggg ttgattttat actctcttat tttcatcggt
      781 gctcatcgtt ttagagagaa ttataaattt atgcaagttt agaattgcag tgctgagaca
      841 aaaaaacttt acaattagta taacagtatc ccgatttaat tctcaaacct tgaacttgta
      901 caattgattc tgaagccatt taaatttagg gtatgcaaat tgtcaattaa tgtcagtaca
      961 ggctgaagaa ggtgcagggt ctctattctt cgaacttgct ggtaatttgc gcctatctat
     1021 gttgatgaag cttaccctta aagcgtatcg actttcgcag ctggcgacag aactagaggc
     1081 tacactgcaa gaagcacaca gaaatatggc gcgtttgaca gattccggcc tggtgtctaa
     1141 gaatagcgaa ggagatttag ttttgacacc atacgggtaa agcaataata tcacttatcc
     1201 caagctataa ttttctcttc aataataagg attatttttt agaacacaat cttggtgacc
     1261 tgccgataca atttatacag aggatcggcg cttttcagaa ttgt
//
LOCUS       DATLQL010000571         1467 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_498937, whole genome shotgun sequence.
ACCESSION   DATLQL010000571 DATLQL010000000
VERSION     DATLQL010000571.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1467)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1467)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1467
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_498937"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1024)
                     /locus_tag="VNB68_05810"
     CDS             complement(<1..1024)
                     /locus_tag="VNB68_05810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003856 - 3-dehydroquinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase II"
                     /protein_id="HVD36898.1"
                     /translation="MSVQKNKELIVKPLVPREKLDNFLSKVSNVSLIYGDPSVITNKN
                     FRTIFDSDNADFVVCNTLDTLKENKKILHKSVGYMKKISNNEDLEEIVLASKYGADFV
                     IVEAIDWKIIPLENLIAKLQKTGTKIYTTTKNSEEIRTMFSVLELGVDGVILETDDVS
                     QVENSHDLLENPTFNLKYAKILELKDVGIGERVCVDTVSMMTMGEGMLIGSKSNFLFL
                     IHNESVGSSFTSPRPFRVNAGAVHCYTAMSDGTTKYLSELEAGVEILVVSKDGTSRKS
                     TVGRSKIESRPMKLVKAQIDDFKGSVILQNAETIRLITKDSKLVSVTDLKVGDEVLAY
                     AKSSSGR"
     gene            complement(1005..>1467)
                     /locus_tag="VNB68_05815"
     CDS             complement(1005..>1467)
                     /locus_tag="VNB68_05815"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019091.1"
                     /note="catalyzes the reversible formation of fructose
                     1,6-bisphosphate from glycerone phosphate and
                     D-glyceraldehyde 3-phosphate; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="fructose-bisphosphate aldolase"
                     /protein_id="HVD36899.1"
                     /translation="GAKEEPDMLQKLGMISVKCNEWNVPLIAMMYPRGENIRDPYNVD
                     IVSHVARIGAEAGADIVKTVYTGDRDSFKNVIRVCPVPVVIAGGPKATTDEDILEMCD
                     GAMQAGAIGVTFGRNIFQHKNPPQILNALSRIIFNSEKPNEALRNIVSSKK"
BASE COUNT          410 a          325 c          230 g          502 t
ORIGIN      
        1 gtcttccgga tgaagatttg gcataggcta agacttcatc accgactttt aggtcagtga
       61 cagatacgag tttgctgtct tttgtaatta accttattgt ctcagcattc tgcaagatta
      121 cagatccttt aaaatcatcg atttgagcct ttaccaattt cattggtcta gattctattt
      181 ttgatcttcc aacggtcgat tttctactgg tgccatcctt acttaccacg aggatttcca
      241 cacccgcttc cagctcggac aagtattttg tagttccatc tgacatagca gtatagcaat
      301 gaacagcacc agcatttact ctaaatggtc gcggggaggt aaatgaagaa cctacagatt
      361 cgttgtgtat aagaaacaaa aaatttgatt tactacctat tagcatgcct tcacccatag
      421 tcatcatcga cacagtatct acgcataccc tctcgcctat cccgacatcc tttaactcaa
      481 gtatctttgc atattttaga ttgaaagtag gattttcaag caagtcgtgc gaattctcga
      541 cctgacttac atcgtctgtt tccaatataa caccatcaac accaagctct agaacagaga
      601 acatagttct aatttcctct gaattttttg ttgttgtgta tatttttgtt ccggtctttt
      661 gaagtttggc tatcagattc tccaaaggaa taatcttcca atcaatagcc tcaacaatta
      721 caaaatctgc gccatatttg gaagcaagca caatttcttc taaatcttca ttatttgata
      781 tcttcttcat ataacctaca ctcttgtgaa gaattttctt attttccttc aatgtatcca
      841 atgtgttgca tacaacaaaa tccgcattat cagaatcaaa tattgttctg aagtttttat
      901 ttgtgattac cgaggggtcg ccatatatta atgacacatt cgatactttg gataaaaaat
      961 tatcaagttt ctctcttggc acaagcggtt ttactatgag ttctttattt ttttgaactg
     1021 acaatattcc ttaatgcctc gtttggtttt tcgctattaa aaataattct tgataatgca
     1081 ttgagtatct gtggcggatt cttgtgttgg aatatgtttc gtccaaaggt aacaccaatc
     1141 gctccagctt gcatcgcacc atcacacatt tccaatatat cctcatcggt agttgctttt
     1201 ggtccaccag caataaccac aggaacaggg catactctta taacattttt aaaagaatcc
     1261 ctatctccgg tgtaaacagt tttaacaata tctgctcccg cctctgcacc aatcctggct
     1321 acatgggaca ctatatctac gttatatgga tccctaatgt tttcacctct agggtacatc
     1381 attgcaatta atggaacatt ccactcatta catttgactg aaatcattcc taacttttga
     1441 agcatgtcgg gttcctcctt agcgcca
//
LOCUS       DATLQL010000572         1482 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_499176, whole genome shotgun sequence.
ACCESSION   DATLQL010000572 DATLQL010000000
VERSION     DATLQL010000572.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1482)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1482)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1482
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_499176"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            502..1017
                     /locus_tag="VNB68_05820"
     CDS             502..1017
                     /locus_tag="VNB68_05820"
                     /inference="COORDINATES: protein motif:HMM:NF014244.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HVD36900.1"
                     /translation="MEQQNRNRVRAEIKFPLILIHTPFGLNFFDMIAKNRAARIYAKF
                     NTYLMPIITILAIFLIVGSLMVMFSNGAARAGVRDVGPQSNLLIPGLNPYLPWTYGWL
                     ALVITIIVHEAGHGIVARVYNIKVESTGIVLILGIPIGAFVNIEREELAKTPLKIKSA
                     ILTAGPLNNRI"
     gene            1033..>1482
                     /locus_tag="VNB68_05825"
     CDS             1033..>1482
                     /locus_tag="VNB68_05825"
                     /inference="COORDINATES: protein motif:HMM:NF036497.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HVD36901.1"
                     /translation="MILYIIVYTLTPFPIMGEPQYGVRVMGIGDNSIASSIGLSKGSI
                     IESIDNQKIRAVEDLSKLLRSNLGTDVSISWKDTDSNRITRIVSLPKSVEANRGILGV
                     TITSVGSDPALVLTRYKTAFGSNPIALLLPPTMAQGSVPYSDLMAPKY"
BASE COUNT          457 a          271 c          315 g          439 t
ORIGIN      
        1 cataaattct tgtttgatac ttgtttagtt aatggagcaa gaatttataa ttgcaaggat
       61 tgaagctcta ggttcagtcg catgtttatc tcacttttga cgatctaaag gagcataggt
      121 taaaccaaag gcaacaaaat cctttagggg ccagtgtatt tgcgtttgcg tcatttgatg
      181 tgccaataaa gaggatgcca caagttgtga ctaatatttc gggaataacg agtgacagta
      241 taattgatac ctcatgcact ctgagaggga gtatgggaaa aattaagata gtggaatttg
      301 agttcgagaa aatgtccagg tccaaataga gaggaatctt cattttaatt cgagatcttg
      361 tgtcagctga gcttcaaatc acttctaaag gatcatttta aataacgcag tatatcgttg
      421 tttgcagaaa ttctaaccga ggtgatatgc agtacgatag atgattcaat ttaaatactg
      481 tttaagtact atcttaagga gttggagcag caaaacagaa atagagttcg tgcagaaatt
      541 aagtttcccc ttatactaat tcatacacct tttggtctga acttttttga tatgattgcc
      601 aagaacaggg cagcgagaat ttatgccaaa ttcaacacat acttaatgcc gataatcaca
      661 atcctagcaa tattcctcat agtcggatcc ctaatggtta tgttttccaa cggagctgca
      721 agagcaggag tgcgtgatgt tggtccacaa tcaaatcttc ttattccagg tttaaatcct
      781 tatcttccat ggacctacgg ttggcttgca ttggtgatta ctattattgt acatgaagcg
      841 ggacatggaa tagtagccag ggtctataac atcaaggtag aatcgacggg gatagttctt
      901 attctaggta ttcctattgg tgccttcgtg aatattgaaa gagaagagct ggctaagacg
      961 cctttgaaga ttaagagtgc gattctgaca gcagggcctt taaataatag gatttaagct
     1021 gcggtttcac tcgtgatcct ttatattatc gtatacactc ttaccccttt tccaataatg
     1081 ggagaaccac aatacggcgt gagagttatg ggtataggcg ataattcaat agcaagttcg
     1141 ataggattat caaaaggatc catcattgaa tccatagaca accaaaaaat ccgtgcagta
     1201 gaagacttaa gcaaactact acgatccaat ttaggtactg atgtgagcat ttcttggaag
     1261 gacacagata gcaatcgaat tactcgcata gtaagtctac ctaagtctgt ggaagcaaat
     1321 cggggtatac tgggagtaac cataactagc gtcggtagcg atcctgctct agtattaaca
     1381 aggtataaga ctgccttcgg ttccaatccc atagcactac ttcttcctcc aaccatggcg
     1441 cagggctcgg tcccttactc tgatttaatg gctccaaaat at
//
LOCUS       DATLQL010000573         1115 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2626120, whole genome shotgun sequence.
ACCESSION   DATLQL010000573 DATLQL010000000
VERSION     DATLQL010000573.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1115)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1115)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1115
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2626120"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(123..602)
                     /locus_tag="VNB68_05830"
     CDS             complement(123..602)
                     /locus_tag="VNB68_05830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HVD36902.1"
                     /translation="MKEQRYRNPTPTVDTIIQRDSWILLVKRRNDPFKGYLVLPGGFV
                     NEGERVEDAAKREVKEETSLNIELLDILGVYSDPARDPRGHMMSTVFIAKISSHNDKV
                     DAVAQDDAAAIEWISLEVIDTRNVGFDHKRIISDYKTWKTSGGTFWSSKDRDRSKVN"
BASE COUNT          340 a          210 c          196 g          369 t
ORIGIN      
        1 atgcaattaa aagtcatatg agaaggtaga tactagtagt agttgtagta gacttccgct
       61 ggtagtactt gtggctaata aacaatgatt gcgtgatatg tgtggcttcg attccatttt
      121 tgttaattaa ctttagacct atctctatct tttgaagacc aaaaggttcc accagatgtt
      181 ttccatgttt tataatctga tatgatcctt ttatgatcga atcccacgtt tctagtatca
      241 atcacttcta aacttatcca ttctattgca gccgcatcat cttgtgctac tgcatcgact
      301 ttatcattgt gagaagaaat ctttgcaata aatacagtcg acatcatgtg tcctcttgga
      361 tctctagcgg gatccgaata aacacctaag atatcaagaa gttctatatt caatgatgtt
      421 tcttccttga cttctcgttt tgctgcatct tcgactcgtt ctccttcatt tacaaatccc
      481 ccaggaagta ctaaataacc tttaaaagga tcgttccttc ttttaactaa taaaatccaa
      541 gaatcccttt ggataattgt gtctacagta ggcgttggat tcctgtatcg ttgttccttc
      601 ataaatatga agatacaata agtaattaaa aagttacttc gaccaattga ctgatgtcac
      661 gaaacagctt tctaagtttg ctaggtaaga agggtaagat taatattgtc acgggctcgg
      721 gtcgttcgtg aacttgttat caactcaaat tgtgaacccc gataccaagc atgaacgtta
      781 actttatagg tagtagtcaa agcgttagac aatctctatt agattgcttg ccttgtatag
      841 gtaaagctaa aaagatttag ttatgctatg acctagactg cagaaaaact tgatgaatac
      901 cgaaacaaac acaatggcaa gttgcctgtc tgtatttaga gaattcgatg aattgaacca
      961 actattattt tgatcttgcg cagtcatcgt ccaacgtata tactagactt tgactagata
     1021 gaaacaacac tacccttcta aatcttgacg aattatgaaa caatgatttg agagtcgcga
     1081 attgaaatgg tctcctaatt caagagctct gtggt
//
LOCUS       DATLQL010000574         1085 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_499642, whole genome shotgun sequence.
ACCESSION   DATLQL010000574 DATLQL010000000
VERSION     DATLQL010000574.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1085)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1085)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1085
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_499642"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..534
                     /locus_tag="VNB68_05835"
     CDS             <1..534
                     /locus_tag="VNB68_05835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36903.1"
                     /translation="NKYFVQGSLMMFGRGKIKSGEYVFVSQKYDRFNRLIIGRINATN
                     NPRIHVQGFYVIPTGLINKVLSGQGEGRLKEVLSNPDPNNCIFMLIDTVETGTFNEEV
                     DENTSKIAWINEERYHVLDGWVKENLPEMFANVLRARTQEDRAQARAILLEKMNSLYE
                     RDLKDHLYAVARSTRIL"
     gene            583..891
                     /gene="rpl12p"
                     /locus_tag="VNB68_05840"
     CDS             583..891
                     /gene="rpl12p"
                     /locus_tag="VNB68_05840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein P1"
                     /protein_id="HVD36904.1"
                     /translation="MEYVFAALLLHKLNKDITEDNVINVIKATGVTPDQVKVKALVAA
                     LSEVNIEEALKAAPIAVPQPSGPASGPAAAPTANKEEEEKKEEKKEEEALEGLSALFG
                     "
BASE COUNT          360 a          194 c          231 g          300 t
ORIGIN      
        1 aataaatatt ttgttcaagg cagtctaatg atgtttggtc gaggtaagat taagtcagga
       61 gaatatgttt tcgtatcgca aaaatatgac cgatttaatc gactaattat tggacgaata
      121 aatgccacca ataatccaag aattcatgtt cagggctttt atgtaattcc tacaggatta
      181 atcaataagg tactgtccgg tcaaggggaa ggaaggctta aagaagtact ctcaaatcct
      241 gatcccaaca attgcatttt tatgctgata gatacggtag aaacaggaac attcaacgaa
      301 gaagtagatg agaatacatc caaaattgcc tggattaatg aagaacgcta tcatgttctg
      361 gatgggtggg tcaaggagaa tcttccggaa atgtttgcga atgttcttag ggctcgcaca
      421 caggaggaca gagcacaggc gagggcgata ctattagaaa aaatgaattc tctatatgaa
      481 cgagatttga aagatcattt gtatgctgtg gctaggagta caagaatact gtaatatttt
      541 gaaagtttta tattatggtc ttggatagac cattctttga ccatggaata cgtatttgct
      601 gcattattgt tacataaatt aaacaaggac attacagaag ataatgttat taacgtcata
      661 aaggctacag gcgtgacccc ggatcaagtg aaagttaagg cactggtagc tgccttaagt
      721 gaagtgaata ttgaagaagc actgaaagca gcgcccattg ccgtacccca accttcaggc
      781 ccagcttctg gccccgcggc agcaccaact gcaaataaag aagaggaaga aaagaaggaa
      841 gaaaagaaag aagaagaagc actcgaagga ttatccgccc tattcggata accaggtaaa
      901 cgtcgtcaac tccattaaaa tatttgtttt tagttttaat gtgactttcc aaatcgtctg
      961 tacattccga atacatctgg acgacacgtt tccggacgta ttctgcaaac cctagatttt
     1021 tatcaagact ttcctatcct aactggctat gtaacctttc tttttgattg cttcggcaac
     1081 aatat
//
LOCUS       DATLQL010000575         1003 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1738876, whole genome shotgun sequence.
ACCESSION   DATLQL010000575 DATLQL010000000
VERSION     DATLQL010000575.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1003)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1003)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1003
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1738876"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(112..261)
                     /locus_tag="VNB68_05845"
     CDS             complement(112..261)
                     /locus_tag="VNB68_05845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36905.1"
                     /translation="MASIRLDSRENIIDRDRKFDPLLDLPDFFLISFITPVVVILSGE
                     RVNIF"
     gene            complement(287..>1003)
                     /locus_tag="VNB68_05850"
     CDS             complement(287..>1003)
                     /locus_tag="VNB68_05850"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HVD36906.1"
                     /translation="GRNLKSIAEREKLPLKLVQLDVSDERSVNNAIQSITTETNRVDV
                     LVNNAGYALGGPFEDLAMDEIKAQYETNLFGLIRTTQAVLPIMRRQKSGTIVNISSGA
                     GRLGYPGGSAYVSTKFAVEGLSESMSYELEPFGIKVVLVEPGFIKTNFAQAMVIAKKS
                     QDPNSPYSQMMQKTASTSSRLAENGSPPDLVAKVVLNAVTTQNPNLRYLVGKDVEEWV
                     KTKNSVTDDEFHNMMKNMSN"
BASE COUNT          276 a          216 c          165 g          346 t
ORIGIN      
        1 acctaaacac aaaattacgg aaacacaaat tacgaaatcg ttctgatcgt tcgttctggt
       61 cgtttgtgaa atgttatcca cttaagttta aataaatggg aggttaatgc tctaaaagat
      121 gtttactcgc tcaccactca ggattactac tactggtgtg ataaaagaga ttaagaagaa
      181 atcagggaga tccaataatg gatcaaactt tctatctcta tctattatgt tttcccttga
      241 gtccaatctg atagaggcca atttaacacc gtggagcgcc ttatctctag tttgacatat
      301 ttttcatcat attatgaaat tcgtcatctg tcacgctatt cttagttttt acccactctt
      361 caacatcttt accaaccaaa tatcttagat tgggattctg agttgtaaca gcattcagta
      421 ccacttttgc taccagatct ggcggagatc cattctcagc cagacggcta gaggtggatg
      481 ccgtcttttg catcatctgc gagtatggag agtttggatc ttgtgacttt ttagcaatca
      541 ccatagcttg ggcaaaatta gtcttaataa accctggttc tactagtacc acttttattc
      601 caaatggctc caattcgtat gacatagatt cactcaaacc ttcaactgca aattttgtac
      661 tgacataagc tgaacctcct ggatagccta atcttcctgc tcctgagctg atatttacta
      721 tcgtaccaga tttttgtctt ctcatgattg gaagtacggc ttgagttgtt cttatcaatc
      781 caaataaatt agtttcatac tgcgccttta tttcatccat tgcaagatct tcaaatggtc
      841 caccaagtgc atatccagcg ttattcacta atacgtctac tctattagtc tcagttgtta
      901 tcgattggat tgcattatta acagatctct catcacttac gtccaattgt actaacttca
      961 atggtagttt ttccctctct gcgattgatt taaggtttct tcc
//
LOCUS       DATLQL010000576         1368 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_499784, whole genome shotgun sequence.
ACCESSION   DATLQL010000576 DATLQL010000000
VERSION     DATLQL010000576.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1368)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1368)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1368
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_499784"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..380)
                     /locus_tag="VNB68_05855"
     CDS             complement(<1..380)
                     /locus_tag="VNB68_05855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36907.1"
                     /translation="MGWLSPSTSGLMHQILKPALSQDITYAIKSQLLSYGSMNTASAS
                     GNKSTMTSDKNLPTNALQLSANEKKGLLNRIYTWANKEGTNPILNFKQNADNVVQLKN
                     PTDSVHQLVITSAGKQVASSGDIKP"
     gene            complement(945..>1368)
                     /locus_tag="VNB68_05860"
     CDS             complement(945..>1368)
                     /locus_tag="VNB68_05860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36908.1"
                     /translation="INTVHLDGNTNINAGVKCDTCPQNNPLHPAEQPPANSTIPQGGG
                     FRIVEPNKVGAWDFRSFTFSPDQIVVNQGDKVTLHFIGVQGAHHVVTVQGVDTFELMR
                     GQIHTVSFVANNPGTITYICHVHLPNMVGQIMVLPKAA"
BASE COUNT          369 a          244 c          277 g          478 t
ORIGIN      
        1 ggttttatat caccactaga cgcaacttgc tttcctgccg aggttatgac caactgatgt
       61 actgagtcag ttggattctt taactgcacg acattatctg cattttgttt aaagtttaga
      121 attggattcg taccctcctt gttggcccat gtgtagattc gattaagaag tcccttcttc
      181 tcattagcac tcaattgaag cgcattggtt ggcaagtttt tatcgcttgt catcgtgctc
      241 ttatttccac ttgcactagc agtgttcatg ctgccgtaag ataagagttg gctcttaatt
      301 gcgtaagtaa tgtcctgact taaggcaggt tttaatattt ggtgcataag tccggaagtt
      361 gaaggactca accatcccat ataaaggaat gttgctacaa ttaggatccc taagcttctt
      421 gtcttattca tcattattta ttatgcgaag taaagataag ttatattgtt tacttaacat
      481 tgttatctta ttctgagatc tatccacatc aaacaattta ggcaaaatga tataaatatt
      541 attagaagaa aatgtttact attgtgatga acatgtctac atataatatg atgtagaatt
      601 ggaatcaacg agttgtttga cattttttag tagtggcccg tagtagtgca ggaatactaa
      661 tgaatacatt aatacattat tattattaat cattcggtat ataatcacct cttttatcta
      721 tatgtgggta gccgttaaga taagctgtct tgtgaacatg gacatacttt ttgttcaatg
      781 tacgaagctg ataggttata gctttgttac ttgattcaaa tctttctgtg aagtattgtt
      841 taacttgttt atttatcata aactgatcat tatctgagta taatcgaagg ccaaaaaaga
      901 gaggggaagc ggagactgcc attgaacatt acttcctatc ttccctatgc agcttttggt
      961 aagaccatta tctggccaac catgttaggc aaatgtacgt ggcaaatgta tgttatggtt
     1021 cccggattgt tcgcgacaaa tgacacagtg tgtatttgtc ctctcatcag ttcaaaggta
     1081 tctactcctt gaacagtaac gacatggtgt gctccttgta ctcctatgaa gtgcagagtg
     1141 actttatcac cttggttgac aactatttgg tctggcgaga aggtgaacga tctgaagtcc
     1201 caagctccga ccttattggg ttccactatt ctgaaacctc ctccctgcgg gatagttgaa
     1261 tttgcaggag gctgttcagc tgggtgcagt gggttgtttt gaggacatgt atcgcatttt
     1321 acgccagcat ttatgtttgt gtttccatca aggtggactg tatttatc
//
LOCUS       DATLQL010000577         1535 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_140905, whole genome shotgun sequence.
ACCESSION   DATLQL010000577 DATLQL010000000
VERSION     DATLQL010000577.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1535)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1535)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1535
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_140905"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..522)
                     /locus_tag="VNB68_05865"
     CDS             complement(<1..522)
                     /locus_tag="VNB68_05865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36909.1"
                     /translation="MTELDGKKVVIKRNKSSKYFHEYILVIAYTTLSFMLCHPTPPPR
                     LGTAMLVNEGFKMRKILEEIGIPTPSLVFISDTSLIEDYIDGGNLYHAFLKGMTHMLA
                     FNAGSLTGRLHNANYVFTDNKSQNYLVTSNGKVLRTDLSFLQKESSVFSRSMDIGSFL
                     ASVIGLETDKYKAI"
     gene            624..1301
                     /locus_tag="VNB68_05870"
     CDS             624..1301
                     /locus_tag="VNB68_05870"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HVD36910.1"
                     /translation="MISSNSSIARRFFSSNNAASYEKIVKFATFGRDSIWKRTMSNLL
                     TKDHCYLLDLGCGTGILSYYIPKVRDHVILGSDLTPDYLLHAKRKSRYSLLTNSIAEV
                     LPFRPGIFDAILSSYLAKYVDLRTVVREHWRLLKKGGLVVFHDFTLPKRKFVRQIWNS
                     YFLLLDQVGRIIKNWRVVLSELDDVIVHSEWVKNLIRELQQVGFESITCKYYTWGTSA
                     IVTGLKP"
     gene            1298..>1535
                     /locus_tag="VNB68_05875"
     CDS             1298..>1535
                     /locus_tag="VNB68_05875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36911.1"
                     /translation="MSESSRMNEWFVPKFGPIRFRAFVGILFLPYTGMCVSFAIIGSL
                     LSHLIFWDRVAAIFIIYFLSVGVSAHAADNLGSRK"
BASE COUNT          439 a          277 c          314 g          505 t
ORIGIN      
        1 aatggctttg tatttgtcgg tttcaagtcc tataacgctt gcaaggaatg accctatgtc
       61 catacttctt gaaaaaaccg aactttcttt ctgcaggaaa gacaaatcag ttcgtaagac
      121 tttgccgtta gacgtaacca aataattttg agatttatta tcagtaaata cataattagc
      181 attgtgcaat cttccagtca agctgcctgc attgaatgct aacatgtgag tcatcccttt
      241 caaaaaagca tgatataggt ttccaccatc tatgtaatct tctatcaatg aagtgtctga
      301 gataaaaacg agagaaggcg taggaattcc tatttcttcc agaatttttc gcatcttgaa
      361 gccttcattg acaagcatcg cagtccctaa ccgcggcgga ggtgtgggat ggcatagcat
      421 aaaagataat gttgtgtagg caataaccaa tatgtattcg tgaaaatact tgctagactt
      481 gtttcttttg ataactactt ttttcccgtc tagttctgtc actgatatgt ttctctgcca
      541 atttacgaag tacaaaaagt cgttccgccc atatcattga atttcgtctt gattatataa
      601 taggttagtg caatcatctt aatttgattt catcgaacag ttctatagca aggcgttttt
      661 tctcatctaa taatgcagcc agctatgaga agatcgtgaa atttgccacg tttggaaggg
      721 attcgatctg gaagcgaacc atgtcaaacc tattgacaaa ggatcattgt tatctccttg
      781 atttggggtg cggcacgggg atactgtcat attatattcc caaagtacga gatcacgtta
      841 ttcttggttc agacctcacc cctgattatc tattgcatgc aaaaagaaag tcgagatact
      901 cattattgac taattctatt gccgaagtct tgccgttcag accagggata tttgatgcga
      961 tattatcatc ttatttggca aaatatgtag atcttcgaac ggttgtaaga gagcattgga
     1021 gattgctcaa gaagggtggc ttggtagttt tccacgactt tacgcttccc aaaagaaagt
     1081 ttgttaggca aatatggaat tcatacttcc tattgctcga tcaagttggc agaattatta
     1141 aaaattggag agttgtttta tccgagttag atgatgtgat agtgcatagc gagtgggtta
     1201 agaaccttat cagggaactt caacaagtag gatttgaatc cataacttgc aaatattata
     1261 catggggaac ttccgcaata gtaactggat tgaaaccatg agtgaatcct ctcggatgaa
     1321 tgaatggttc gttccgaaat ttggtccgat tagatttagg gcgtttgttg ggatattatt
     1381 tttaccttat acaggaatgt gcgtctcatt tgcgatcata gggtcacttt tatctcatct
     1441 aatattttgg gaccgagttg cggctatctt tattatctat tttctatccg ttggtgtttc
     1501 tgctcacgcg gcagataatt taggatccag gaaaa
//
LOCUS       DATLQL010000578         2354 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1564525, whole genome shotgun sequence.
ACCESSION   DATLQL010000578 DATLQL010000000
VERSION     DATLQL010000578.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2354)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2354)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2354
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1564525"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            240..1781
                     /locus_tag="VNB68_05880"
     CDS             240..1781
                     /locus_tag="VNB68_05880"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HVD36912.1"
                     /translation="MTTQLSLKKKSKLWPIVFVAIPLLLSAYTHLWNPAGFPSQHVDE
                     GHYLRKAVSTESGQGLQPQNRYLAPYFGQIFLAGIFKIISYPDFLIKETIDGNSIQQF
                     FMIPRLLMGILAIVDTFLIYKISQRRYGNIVALAASILFAVMPFTWMTRRVFLESIQL
                     PFILTSIMLVIYSADMKQHKKIAIIVSGIFMGLAIFTKVPAFTTIPLVVFLTYSNTKR
                     LRYVLLWIIPTILIPALWPIHAAAVGDLNNWVDGILYQTDRESRPLINALNTLFQVDP
                     IFFVLGIGGIIYSVFKRDYFLMIWTFPIFIFLQLIGYVSSFHLISLLPPLCIAGGRLI
                     AEIGNRSANQSVRNVLPFIRISAIGLFGLISTSMIISIDMNSTYYQALAFLVQELPDT
                     KTTNSSNSNIQSAGGRITVSGNPEYFWIPEFIFDKQFVGSSYYSNVPFKTDKYIMIID
                     KGFLNILDGNSRSRERLTLALNATQSLSVFQQNMTGDLDNSKYPYTGLKLTPEFKYID
                     IRSNY"
     gene            1917..>2354
                     /locus_tag="VNB68_05885"
     CDS             1917..>2354
                     /locus_tag="VNB68_05885"
                     /inference="COORDINATES: protein motif:HMM:NF020489.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonyl-tRNA synthetase editing
                     domain-containing protein"
                     /protein_id="HVD36913.1"
                     /translation="MLFLHADFIEYEPISKEIQLAEEGIPIAKKRMDDLIVVLTAVES
                     EDDENTASDSSTEIRKYGDLVKCDQVLIYPYAHLSSNLASPKVALQILQFLEMGVRKS
                     FPIVARAPFGWTKSFNIKVKGHPLAENARTITGQFKLSKSPDKT"
BASE COUNT          709 a          495 c          425 g          725 t
ORIGIN      
        1 aacctcgtga tcgcagaacc aaacggttct ttgaaaccaa ctcagtatta tgatatactc
       61 aagaatgcca taaatgctac ctatggacga taagtttggc ctagtgccaa atttctctca
      121 atcgaatatc gtaacagagc cagcaagtca tttctttttc tcattattga atttcaatac
      181 attccagaag atttatttcc gaatgataat gatctagaag ctgacgaagg gcacaggcgt
      241 tgaccacaca actatcacta aaaaagaaaa gcaagttatg gcccattgtc tttgttgcta
      301 ttcccctttt gctttccgcc tacactcatt tatggaatcc agccgggttt ccctcgcagc
      361 acgtagatga agggcattac cttagaaagg cggtctcaac cgaaagcggc caagggctgc
      421 aacctcagaa tagatatttg gcaccatatt ttgggcagat atttctggca ggaatattca
      481 aaattataag ctatcctgat tttttgatca aagaaaccat tgatgggaat tctattcaac
      541 aatttttcat gattcccaga ttgctgatgg gaattctcgc catagtcgat acattcctta
      601 tttacaaaat ttcacagcga agatatggca atatagtcgc actagcagct tcgattcttt
      661 ttgcggttat gccgttcacc tggatgacta gaagagtatt ccttgaatcc atacagcttc
      721 catttatctt gacttcaata atgctagtca tttattcagc tgacatgaag cagcacaaga
      781 agatagccat aattgtttct ggcatattta tgggactggc cattttcacg aaggttcctg
      841 cattcactac aattccatta gttgtattcc ttacatactc taacaccaag cgtcttcgat
      901 acgtcctgtt gtggataata ccaactatat tgattccagc cctttggccc atacatgctg
      961 cggcggtagg agacttgaat aattgggtgg atggaatttt atatcagaca gatcgagaga
     1021 gtcgtcctct aataaatgcc ttgaacacat tgttccaagt tgatcctata tttttcgtgc
     1081 tcggcattgg cggaatcata tactcggtat ttaaacgcga ctattttctc atgatttgga
     1141 catttcccat ttttatcttc cttcaattga ttggttatgt ttcatcattc cacctcattt
     1201 ctctccttcc tcctctctgc atagcaggag gacgcttgat tgcagaaatc ggaaatcggt
     1261 cggcaaatca aagtgtccgt aatgtgttac catttatcag gatttctgca attggtctct
     1321 ttggattgat cagcacaagc atgataatat caattgatat gaattcgaca tattatcaag
     1381 ctctggcatt cctagttcaa gaactcccag ataccaaaac tactaattcc agtaactcta
     1441 atattcagtc tgcaggcgga aggataactg tcagcggtaa cccagagtat ttttggattc
     1501 cagaatttat ttttgataaa caatttgtag ggagtagtta ctacagtaat gtccccttca
     1561 agactgacaa gtacataatg atcatagaca aggggttcct aaacatatta gacggcaact
     1621 ctcgttcacg cgaaaggttg actcttgcac tcaacgctac acaaagcctt tctgtgttcc
     1681 aacagaacat gaccggtgat cttgacaatt caaagtatcc ttatacaggt cttaagctta
     1741 ctcctgaatt caagtacata gacatacgat caaactatta attactaaac taaggtctga
     1801 tcaatgggtt ttatgggccc gtatatttta gtttccatga attaattaat tctctttaga
     1861 ttttccaaaa gtatttaatt tgtgcaaacc ccatagttga ctgacttata atgcgaatgc
     1921 ttttcctcca tgccgatttt atcgaatatg aacccatttc taaagaaatc cagttagctg
     1981 aagagggaat tcctatcgct aaaaaaagga tggatgatct gatagtcgta ctaactgctg
     2041 tcgagagtga agatgatgaa aatacggcat cagattcatc taccgaaata agaaaatatg
     2101 gagaccttgt aaagtgcgat caagtcttaa tctatcccta cgcacaccta agttctaatt
     2161 tggcttcacc taaagtagct ctacaaattc tccaatttct agaaatgggt gttcgaaaat
     2221 cttttccaat tgtagcaaga gcaccatttg gttggaccaa gtcttttaac attaaggtta
     2281 aaggtcatcc attggccgaa aatgccagaa caataacggg ccaattcaaa ctgtcaaaaa
     2341 gccctgacaa gaca
//
LOCUS       DATLQL010000579         1967 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1383145, whole genome shotgun sequence.
ACCESSION   DATLQL010000579 DATLQL010000000
VERSION     DATLQL010000579.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1967)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1967)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1967
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1383145"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(389..1723)
                     /locus_tag="VNB68_05890"
     CDS             complement(389..1723)
                     /locus_tag="VNB68_05890"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HVD36914.1"
                     /translation="MKKSQKWVILVSFLIISILSFLYSWHYVTPLFARAKTSIEGPSI
                     NDTHLNSQLITSGLKAPTAMTFVGQDDILVTEKNTGNVMRIIHGVASQQPLLHVEVAK
                     KDERGLLGVAISKNTEAGKRYVFLYYTEAQRNDLGGVTPDPGGNRVYRYELVKDKLTN
                     PKLLLDLPALPEPRHNGGKMTIGPDNSLYIAIGDVGGSFVAKDSETKAQNYVNGSEPD
                     GRAAIIRITQDGNPVGNGIIGSVPMSNLYYAYGIKNSFGFDFDPVTGKMWDAENGPTF
                     GDEINLVDPGFNSGWAKVQGVWFVQSQEGAKTEPGKGERVPENPQGLVGFGGKGKYSS
                     PEFTWDKSVAPTALKFLTSSKLGAQYANDMFVGDANFGNIYHFGLNQNRTGLSLDGPL
                     VDKVADKVEELGNIIFGKGFGVITDLQVGPDGYLYVLVYDKDDGRIYRISPA"
     gene            complement(1749..>1967)
                     /locus_tag="VNB68_05895"
     CDS             complement(1749..>1967)
                     /locus_tag="VNB68_05895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36915.1"
                     /translation="KARTHLDLDGPLADKVADNSNELQDIIFAKGLGTITDLEVGPDG
                     HLYILSAYHRDGTIFRINQIVNSANATK"
BASE COUNT          556 a          425 c          343 g          643 t
ORIGIN      
        1 taggcggttt aggaaaagat attttcacat gcgggaaagg aaatgatgtt gttcatgatt
       61 ttatcgaatt agaaggtgat tcggtaaatg atgattgtga aacgataatt tcttgaatag
      121 gtaatcgatt aacgatttca tcacaaaaga agtctcacga actgcactac tttaatccca
      181 aatatgttgt attttattgc atttacgtca accgacataa acttatttag atgagctaat
      241 tcccgattct gttgggaatg gaaagctctt cgattataca ttttctccac aaccacacta
      301 tcgagtttat acaaacaaag cgaaatgaat agaaccgttt cacgatatga ccgctgttaa
      361 ttatatgata gaatccaaat tcagtgcttt atgctggcga tattctgtat attcttccat
      421 cgtctttgtc atagacaagg acatacaagt agccatcagg tccaacttgc aaatcagtta
      481 ttactccaaa ccctttgcca aaaataatat ttccaagttc ttcaacttta tcagctacct
      541 tgtccacaag aggaccatcc agacttaatc ctgtcctatt ttgatttagg ccaaagtgat
      601 atatatttcc aaaatttgca tctcccacaa acatgtcatt tgcatattga gctccgagtt
      661 tacttgaagt gagaaacttg agagcagttg gagccaccga tttatcccac gtgaattctg
      721 gagaactgta tttgccctta cctccgaaac cgacaagacc ctgaggattt tcaggtactc
      781 tttcaccttt tcctggctca gtttttgctc cttcctgcga ttgcacaaac caaacgcctt
      841 gaacttttgc ccaaccactg ttaaaccctg gatccacgag gtttatctca tccccaaaag
      901 taggaccatt ttcagcatcc cacatttttc ctgttacagg atcaaagtca aatccaaagc
      961 tattttttat cccgtatgcg taatacagat ttgacatggg aacactaccg attattccat
     1021 taccgacagg attaccatct tgggtaatcc taatgatagc agctcttccg tcaggttccg
     1081 aaccattcac ataattttga gctttcgttt cgctatcttt tgctacgaat gaccccccga
     1141 catcacctat tgcaatatag agactattat ctggtccaat tgtcatttta cctccattgt
     1201 gtcgcggttc aggcaacgct ggcaagtcaa gaagaagttt aggatttgtc aacttgtctt
     1261 ttacaagttc atatctgtaa acgcgattgc ccccagggtc tggggtaacg cctcccagat
     1321 catttcgctg agcttccgta tagtataaga agacatatct ttttccagct tcggtatttt
     1381 ttgaaattgc tactcctagt agtcctctct catctttttt tgctacctcg acatgaagta
     1441 aaggctgttg tgaagctact ccatgtataa ttctcataac atttcctgta ttcttttctg
     1501 taaccagtat atcatcttga ccaacgaatg tcatggcagt tggcgcttta aggccactcg
     1561 ttattaattg agaattcaag tgcgtatcat tgatagatgg cccctctatg gaggtctttg
     1621 ctctagcgaa tagtggagtg acataatgcc aagaatacaa gaaggataga atcgatatta
     1681 taaggaatga tacaagaatc acccattttt gagatttctt cattatcatt acctcgtatt
     1741 atgctcgatt atttagtggc attggcagaa ttgacgattt gatttattct aaatattgtt
     1801 ccatccctat ggtaggctga taatatatag agatggccat ctggtcccac ttctaagtca
     1861 gtaattgtcc ctaatccctt tgcaaatatg atatcttgta attcattcga attatctgct
     1921 actttgtcag caagtggacc atcaaggtcc aaatgtgttc tagcctt
//
LOCUS       DATLQL010000580         1513 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2454825, whole genome shotgun sequence.
ACCESSION   DATLQL010000580 DATLQL010000000
VERSION     DATLQL010000580.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1513)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1513)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1513
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2454825"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(85..324)
                     /locus_tag="VNB68_05900"
     CDS             complement(85..324)
                     /locus_tag="VNB68_05900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36916.1"
                     /translation="MTQVQLLALTLGSSERLEDVEKICIKCGRKNSEHPATGRFNTII
                     LYGPECAWNPDDEFRDFVMNSLKSSGYNLNDFGYD"
     gene            complement(654..1304)
                     /locus_tag="VNB68_05905"
     CDS             complement(654..1304)
                     /locus_tag="VNB68_05905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36917.1"
                     /translation="MLYYSYIPTYGHLTKKFGNVTILVGWVNEPALVGDLNNVLIDVQ
                     KGSGKGISPVLNAFSNLSASVKYGTLTKNLDLLPSETTDGSYEGKLIPTRVGTYSIVL
                     KGDVQGQKINGEIQLDAVEGKQGISFPDTSPADASTNNALVSKVEGTLSQLSNDLQDA
                     QENIGQLGKNLQNVQNSINSINQSADRTYMISVTAIGLGLAGIMIAGFSLSRKTKI"
     gene            1315..>1513
                     /locus_tag="VNB68_05910"
     CDS             1315..>1513
                     /locus_tag="VNB68_05910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36918.1"
                     /translation="MNDDNKNITNMKRIDFNFKYHLSYSTLKSFPQYSTTIPVMREII
                     KYTMRVYTRCYLSVRVNYFTKQ"
BASE COUNT          458 a          316 c          264 g          475 t
ORIGIN      
        1 aaaaagtcaa taggattcta tattcttttc aaaaaaaaat tttaagacct tcttaaagaa
       61 cctgaagagt ctctaattaa caattcaatc atatccaaaa tcgtttaaat tatagccaga
      121 gctcttcaat gagttcatta caaagtctct aaattcatcg tcaggattcc aagcgcattc
      181 tggaccgtac aaaattatgg tgttgaaccg tcccgttgcg ggatgttcgg aattctttct
      241 tccgcatttg atgcatattt tttcgacatc ttccaatctc tcgctagatc ccaaagtcaa
      301 cgccaatagc tgtacctgag tcaccgtgca tatactttac tggcaaaata tcactcatat
      361 tctcccgact cagtaaaaga acctacgagc ttaactgaat ggcaatgttg gtgtgagata
      421 ctttaatttc ggaaattaat tgatttggtc tgtcattact cctaatcaag agtactgtct
      481 attcaggtcg cgtatcttac tggccgcctt acagacaaat tgccataaca gtgggaaaga
      541 ttgttattgc tgctcactgc aatcgtccat ccattatgaa attggggtcg tccttgttca
      601 caccagaatc tgaataactg aaaataccga tttgttcagc ataagctcaa gaactatatt
      661 tttgtcttgc gtgataatga gaagccggca atcattatac ccgccaaacc cagtccgatg
      721 gcagtcacac tgatcatgta tgttcgatct gcgctctgat tgatagaatt aattgagttt
      781 tgtacatttt gaagattctt tccaagttgt ccaatattct cttgcgcatc ctgtagatca
      841 ttggataatt gacttagagt tccctcaact tttgaaacta gagcattgtt agtgctagcg
      901 tcagcgggtg aagtatctgg gaatgaaatt ccttgcttac cttccactgc atcgagctga
      961 atttctccat tgatcttctg tccctgaaca tcgcccttaa gaactatgga atatgtacca
     1021 actcgtgtag gaattaactt gccttcatat gaaccatcag tcgtttctga aggcagaaga
     1081 tctagattct ttgttaatgt cccatatttt actgaagctg ataaattgga gaatgcattc
     1141 aacactggag atataccttt tcccgacccc ttttggacgt ctatcaatac gttatttaaa
     1201 tcgcctacaa gagcaggctc atttacccag ccgacgagaa tagtaacgtt tccaaacttt
     1261 ttggttaaat gaccataggt gggtatgtaa ctgtaataaa gcaaaaatgc gattgtgaat
     1321 gacgacaaca aaaacataac caatatgaaa cgaatagact tcaattttaa gtatcatcta
     1381 tcatattcga cgcttaaatc tttcccccaa tattcgacga ctataccagt tatgagggaa
     1441 ataataaaat acacaatgcg tgtgtatacc agatgctact tgtctgttag agttaactat
     1501 tttacaaagc agc
//
LOCUS       DATLQL010000581         2503 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_141278, whole genome shotgun sequence.
ACCESSION   DATLQL010000581 DATLQL010000000
VERSION     DATLQL010000581.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2503)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2503)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2503
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_141278"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            586..741
                     /locus_tag="VNB68_05915"
     CDS             586..741
                     /locus_tag="VNB68_05915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36919.1"
                     /translation="MSIAKGEFILALIIMVSSISLLQLEYFTNVDAQEEETEVHFLTT
                     LGRDLVE"
     gene            948..1859
                     /locus_tag="VNB68_05920"
     CDS             948..1859
                     /locus_tag="VNB68_05920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36920.1"
                     /translation="MLSNKYRQFNTVILTVYTKLLLIISLSILALVFSNSAIEQLYSI
                     YIDQEAAAAKLSALDKFGIQEIYPTKEGGREWFMNMSKPLGDNAFSLTFNQNITRQSD
                     GGWRISGPAVRMNVNTPPGLPQWKNVEITGYAKIIDVLPDHNSTVKDEDLSWYARGGR
                     HNTQVPCEATAYIGGIYVGGSVGWKKELWFTGGYTDEKGPEKVTSPLIGRWIGWKVIM
                     YNINNDTAVKLESYIDNTNTNYWIKVTDLVDDGGWYSKSDDNEFNSAPCGRDKDYVVT
                     NAGPIATFRSDNLTWDFMNLSIREINP"
     gene            2065..>2503
                     /locus_tag="VNB68_05925"
     CDS             2065..>2503
                     /locus_tag="VNB68_05925"
                     /inference="COORDINATES: protein motif:HMM:NF028479.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-bladed beta-propeller"
                     /protein_id="HVD36921.1"
                     /translation="MSLYCASSVHFDIATSQTSEEQDSVCSPIYIAKTVNSTSRGISE
                     ANSLPGFHAVKKFDSNGTLVGVWGTKGTGDGQFLHAHGIGTDSKGNVYVSDAERCDIQ
                     KFDSNGTFITKWGSLGTGPSKFLEPESIAVDDSGNVFVADYGNH"
BASE COUNT          803 a          442 c          517 g          741 t
ORIGIN      
        1 tgtcaagaat tatacggggg catttcctta taattacttg aggcttactt tggcagtctt
       61 aatcgggcat tggcaagcgc aactggattg gcaacgcatt gcgtctagca cctctcaagc
      121 tcttgttagc caagattaaa tactgtcatt cgttctattt attgctgtac tgagaataat
      181 ttgttaagtt tgcagcacat atatacatga atatttcatc taagcttcgt tcatttttta
      241 ataagaacca atccattctt gttatccttt aattgcttat agttcgaaaa cactccgaac
      301 gtaagcttga aaaaaaccaa atttgaaatt ggaacctagt tatagtaatg atcatgaaat
      361 ctagtactcg gccatcagga cgaagaagaa aaaactagtt gataactggt cggtttctgt
      421 taaattagca atgtcaggaa atttgtatcg gtcaataaaa accaaaaaca aaaaaggtat
      481 gaattagtca tgagtcatgt actacgcttc agctctagta aattaaataa ctggtctggt
      541 cttttttaat aatctttatt atctctaact aaatgaatgg tattattgag tatcgcgaaa
      601 ggcgagttta ttctagctct aatcattatg gtttcatcta tcagtttgtt acagctagaa
      661 tattttacga atgtagatgc gcaggaagag gagactgagg ttcattttct gacaactttg
      721 ggcagggatt tggtggaata accgactcgg aaattggacc agacggacgg atatctatac
      781 atagtctcaa ttgggcaggg gaaaatattc aaaattgttc cttcctgaat tatactatcg
      841 aatgtatgtt ccgccattcc atttcctctt ggatatattg ccgcgatcaa tgagatttgt
      901 acctcgaaat ggttgattct gaatatcaat caggttgtta aaaatacatg ttatcaaata
      961 aatatcgaca atttaatact gttatactta ctgtgtatac taaactactt ttaataattt
     1021 ccttatctat attagccttg gtcttttcaa attctgctat agaacaatta tattctatct
     1081 atatagatca agaagcagct gccgctaaac tatctgcact agataagttt ggaatccagg
     1141 aaatctatcc cacaaaagaa ggaggaagag aatggttcat gaatatgagt aagcctctcg
     1201 gcgataacgc tttttcgctc acttttaacc agaatattac tcgacagagt gatgggggat
     1261 ggaggatatc aggtccagcc gttagaatga atgtaaacac tccacctgga ttacctcaat
     1321 ggaagaatgt agagatcaca ggttatgcaa aaattattga tgtacttcct gaccataact
     1381 caaccgtcaa ggatgaagac ctgagttggt atgccagagg tggaagacac aatacacagg
     1441 taccttgcga agctaccgca tatatcggag ggatttatgt aggaggctcc gtcgggtgga
     1501 aaaaagagct ttggttcact ggcggataca ctgatgaaaa gggaccagaa aaggtaacta
     1561 gtccactgat tggacgctgg atagggtgga aagtcataat gtacaatatc aataatgaca
     1621 cagcagtgaa gttggaatca tacatagata acactaatac aaattattgg ataaaagtga
     1681 ctgacttggt cgacgatggt ggatggtact ccaagtctga tgacaatgag tttaacagtg
     1741 caccgtgcgg cagagacaaa gactatgtgg tcactaacgc aggtcctata gctactttca
     1801 gatcagacaa tttgacatgg gattttatga atctcagcat tagggagata aacccatgag
     1861 aaatctcatc acttatcttg tttctccaga gatctggata gatcttgaaa caataataaa
     1921 aacctcagca tactatgatt atgatacacc gctctctatt ctacgatatc aaattaaaaa
     1981 caggagaaaa ctaatatcac ctttctgtta aaagcaatgt gcatgaaatc cagctataaa
     2041 gtactattat ttctaagtct atccttgtcg ttgtattgcg cttcatcggt ccattttgat
     2101 atcgctacat cgcaaacctc ggaagaacaa gacagtgtat gctctcctat atacatcgca
     2161 aagaccgtaa attctacttc ccgagggata agtgaggcta atagtcttcc aggatttcat
     2221 gccgtaaaga aatttgacag caatggaaca ctagttggag tttggggtac aaagggaaca
     2281 ggagacggtc aattcctgca tgcgcatggt attggaactg attcgaaggg taacgtgtat
     2341 gtaagtgatg ctgaaagatg tgatattcag aaattcgaca gcaatggcac ttttatcaca
     2401 aagtggggtt ccttgggaac cggacccagt aaatttttgg agcctgagag tatagctgtg
     2461 gacgacagtg gtaacgtctt tgtcgcagat tatggaaatc att
//
LOCUS       DATLQL010000582         3287 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2098546, whole genome shotgun sequence.
ACCESSION   DATLQL010000582 DATLQL010000000
VERSION     DATLQL010000582.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3287)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3287)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3287
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2098546"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(103..480)
                     /locus_tag="VNB68_05930"
     CDS             complement(103..480)
                     /locus_tag="VNB68_05930"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: protein motif:HMM:NF012756.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0043419 - urea catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit gamma"
                     /protein_id="HVD36922.1"
                     /translation="MTVTVQGEPDTAPFTRIYQFYNKTDYIILSNSIKTINNKLSRKM
                     KININETLYIYLNYIIDQLRSHKKRNEIIKNASKLLTPDQVMIGVPESLRKINFNIKL
                     MSTQRLRITIKEPISTTSYILAP"
     gene            complement(512..1654)
                     /locus_tag="VNB68_05935"
     CDS             complement(512..1654)
                     /locus_tag="VNB68_05935"
                     /inference="COORDINATES: protein motif:HMM:NF012703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agmatinase family protein"
                     /protein_id="HVD36923.1"
                     /translation="MEFYGNSYKSNDEPIFVGIPTFLKLPWLRSHEELKSIKPDVAVI
                     GEPFDFGTTIRPGARYGPRAIRAASTVPSPPYEHFNIETGVDPFGVFRTVDYGDVVVS
                     PGDVVESHRRMTDKVKEVLDIDGIPIMLGGDHSITFANVRAFAKKYKNIGMIHIDTHA
                     DCAPQGLCGFKYDHGAHIRRIMELGCLKGKNYTLIGPRGYWPGPDLYKWMADQDFQWF
                     TMLDVEELGIDKIAKEAADRANDNVDAVYISWDIDTFDPAYAPGTGEPEPNGLTSREG
                     MRLMRLLSTSFDPDRFAFDLVEVAPNYDVSDGNSYNGGITSGLANRLIVELLAGLSLT
                     KKGKTDGNPVRPKFYRGQGNTYDFGKGPKAKIPKRPPLSYGKDAKK"
     gene            1887..>3287
                     /locus_tag="VNB68_05940"
     CDS             1887..>3287
                     /locus_tag="VNB68_05940"
                     /inference="COORDINATES: protein motif:HMM:NF012686.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36924.1"
                     /translation="MASLDWYGVGVIAFLAASLVVGTLTSRLVKKSSKRYMVAGKSLP
                     LFFVGTMLAAQSIDGNSSLGNVSLVYQFGFWAGAVIPIGLAVCLVLTGAFYAKKLNKM
                     SMLTLPDFYYRRFGAGPEGISAILMMISFIVLVAGNFAASGFILSAVLHIDFFWSMLI
                     AALVVLVYTFAGGLFSSAYTDIFQIYLAIGAFWAAFIFFAGGLSGVDFGAILGNAPPS
                     YPDLSGLTDMGNGALVNWAGILALALGDIVALDFMERVFAAKDGKTARRGAFMGGGLT
                     ALTIIPTSMMGIVALYFLPNLADPFTAYPDLAINHVPFAIGIALLMGVLGASMSTANG
                     GLLAISSVMSRNIIQRDILRKWFKKPGMEDRKLLRLTRIFTIPMMAAAFILGYLLPQP
                     GVYLILAFDIVFAGAWAPLTLGLFWKKSNWYAAITSLILGSGLRLLLFFTTPPELAGL
                     DTMIPPIVSFVAFIVVA"
BASE COUNT          869 a          634 c          645 g         1139 t
ORIGIN      
        1 gtgttatatt taagaccact ttctagcata aaaaatttgg attggcattt ctagattata
       61 ttctaaattg ggtatctggt ataaaattac attatctttc cattaaggag caagaatata
      121 gctcgtagtt gaaatcggtt cttttattgt tatgcgcagt ctttgtgtgc tcataagctt
      181 aatgttgaaa ttaatctttc tgaggctttc tggtacgcca atcataacct gatccggtgt
      241 taagagcttt gaagcatttt ttattatttc atttcttttc ttatgcgaac gcaattgatc
      301 aatgatgtaa ttaagataaa tgtataatgt ctcgttgatg tttatcttca tttttcttga
      361 taatttatta tttatagtct tgatcgaatt ggacagtatg atatagtccg tcttattgta
      421 aaattgataa attcttgtga agggagctgt atcgggttct ccttgcacag taactgtcac
      481 gtctatcaga atgctataac aagtccatta attatttttt ggcatcttta ccatagctta
      541 gaggaggtct ctttggaatt ttggccttgg gtcctttgcc aaagtcatag gtattacctt
      601 gtcccctgta gaatttcggt ctcactgggt ttccatcagt cttgcccttc ttggttagtg
      661 ataatcctgc caatagttcg acaataagtc tgtttgctaa acctgaggtg ataccaccgt
      721 tatatgaatt accatcactt acgtcataat tgggggctac ttcaaccaaa tcaaatgcaa
      781 atcgatctgg atcaaacgag gtagatagaa gccgcatcag cctcatgccc tcccttgatg
      841 tcaagccatt tggttcaggc tctcctgtac cgggagcata agcgggatca aaagtatcta
      901 tgtcccagct tatatatact gcatcaacgt tatcatttgc tcggtctgca gcctcttttg
      961 ctatcttatc gatacccagc tcttcaacat ctagcattgt gaaccattgg aaatcctggt
     1021 cagccatcca tttatacaag tcaggtccag gccagtaccc acgtggtcct atcagagtat
     1081 agttctttcc tttgagacag ccaagctcca ttattcttct aatatgtgca ccatgatcat
     1141 acttgaatcc acacaatcct tgcggcgcac aatcggcatg tgtatcaata tggatcattc
     1201 caatattctt gtacttcttc gcaaatgcac gaacgtttgc aaaagttata gaatgatctc
     1261 ccccaagcat aattggaatg ccgtctatat ctaaaacttc tttgacttta tcagtcatcc
     1321 ttctgtggga ttcaacgaca tcaccaggag acacgactac atcaccatag tctacagttc
     1381 taaaaactcc aaatggatca actcctgttt ctatattaaa atgttcatac ggtggtgatg
     1441 gtactgtgga tgcagccctg attgctcgtg gaccgtatct tgctccaggt cgaattgtag
     1501 taccaaagtc aaaaggttct ccaattacgg ctacatctgg tttgatgctt tttagctctt
     1561 cgtgacttct tagccaaggt agtttcaaga aagtaggtat tccaacaaaa attggctcat
     1621 cgttactttt gtaggaattg ccataaaatt ccatacccat atttagtcta tttttttaat
     1681 tgtactatat tttttaaata ttgctaaaca atgaatctta gctaaaatct tgaatatcaa
     1741 caattcacag ccaattgcag atactctact agaattatca ttttctagaa agaataatta
     1801 taaatcgttc aataattgta aatttcttag ttaattttct cttttgtatt aaatccttat
     1861 atagatatat aaataacaag tgtgggatgg cttcacttga ctggtatgga gtcggtgtaa
     1921 ttgctttttt ggctgcatct ttggttgttg gtacattaac ctcaaggcta gtaaagaaga
     1981 gcagtaaaag atatatggtt gccggtaaga gtcttccgct tttttttgta ggtacaatgc
     2041 tggccgctca atcaatagac ggaaattctt ctcttggtaa tgtttctctg gtatatcaat
     2101 ttggtttttg ggccggggct gttattccta taggacttgc tgtgtgtttg gtccttacag
     2161 gggcttttta tgccaaaaaa ttgaacaaga tgtcaatgct tactcttcct gacttttact
     2221 atagaaggtt tggagcagga ccggaaggta tctcggctat acttatgatg attagcttta
     2281 tagttctggt ggctggtaac tttgctgcta gtggatttat cctttctgcc gtattacata
     2341 ttgatttctt ctggtcaatg ctcatagcag cactggttgt actagtttac acttttgccg
     2401 gtggcctctt ttcttctgca tatacagata tattccaaat ttatctagca ataggtgcat
     2461 tttgggctgc tttcatattt ttcgctgggg gattgtcagg agttgatttt ggcgccatcc
     2521 taggtaatgc accaccttct taccccgatc tttcaggact aactgatatg ggaaatggag
     2581 cacttgttaa ttgggcagga atattagcgt tagctcttgg tgacatagta gcgcttgatt
     2641 ttatggaaag agtttttgca gccaaagatg gcaagacagc acgaagggga gcattcatgg
     2701 gaggaggatt gactgcgctt acaataattc ccacaagcat gatgggaata gtcgccctat
     2761 atttccttcc gaatttagcc gatccgttta cagcatatcc tgacttggct ataaatcacg
     2821 taccgtttgc aataggaatt gctctattaa tgggagtatt gggtgcatcc atgtcaacgg
     2881 ctaatggagg gttactcgca atatcaagcg ttatgtcaag aaacattata caacgagaca
     2941 tattgagaaa atggttcaag aaaccaggta tggaagatag aaaactattg agacttacaa
     3001 gaatatttac tattccaatg atggctgctg catttattct gggctatcta ttgccccagc
     3061 ctggtgtcta tctcatttta gcctttgata ttgtctttgc tggtgcgtgg gctcctctta
     3121 ctttgggttt gttttggaag aaatcaaatt ggtatgctgc catcacgtct ttgatcttgg
     3181 gatccggcct cagattgtta ctatttttca ctactccccc agaacttgct ggtcttgata
     3241 caatgatacc gccaatagta tcgtttgttg cttttatagt agtagct
//
LOCUS       DATLQL010000583         1789 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_855269, whole genome shotgun sequence.
ACCESSION   DATLQL010000583 DATLQL010000000
VERSION     DATLQL010000583.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1789)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1789)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1789
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_855269"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..253
                     /locus_tag="VNB68_05945"
     CDS             <1..253
                     /locus_tag="VNB68_05945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36925.1"
                     /translation="KRGFLQSTSCSQIIPIWIGDEKTALSLSNELLECGAFVHPIRYP
                     TVKKGSSRLRVTLSSSHTISELDHSIDSLETVGKKYHIV"
     gene            710..922
                     /locus_tag="VNB68_05950"
     CDS             710..922
                     /locus_tag="VNB68_05950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36926.1"
                     /translation="MAISGGYLMPGRKSIVKKETHMLNRSQAKWRLENWKSIIKTYRN
                     KGYSYPTISRIKKEMKKITESGNKKN"
     gene            complement(924..1571)
                     /locus_tag="VNB68_05955"
     CDS             complement(924..1571)
                     /locus_tag="VNB68_05955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="Snf7 family protein"
                     /protein_id="HVD36927.1"
                     /translation="MSFGNKWIKPHSESVGNKLLEGIKPQAPLKPRIEEAQKRLQMQI
                     SKLDSIATKTLEKDQLIFKRVVHAMQNHDSQYAKVLSGELSQVRKMNKMVTSAKLALE
                     QIQLRLNTMTELGDVVVTLSPAMSVIKGVQGGLSSMMPEADHSLGQISDLLGNIMSDS
                     GQIPDAEISGSNTLTEDALKIIEEASAVVEESTKDKFPDLPSSNLQSRKAESSIY"
BASE COUNT          543 a          352 c          335 g          559 t
ORIGIN      
        1 aaaaagaggt tttttacagt cgacatcatg cagtcagata attccaatat ggatagggga
       61 tgagaaaaca gccttaagcc tctcaaatga attgctggaa tgcggagctt ttgttcatcc
      121 tattagatat cctacagtga aaaagggatc ctcgcgccta agagtaacgc tgtcctcatc
      181 ccatacgata agtgaacttg atcattcaat tgattcactt gagacagtag gcaaaaaata
      241 tcatatcgtt taatttttac tacgatctta cagcgaatag caagataaaa tatcatcaag
      301 cacgtactaa cagttatttc atttcatatt aaagtcgaaa aaatattggg aaaatgcctt
      361 cgggtaggat aaatccgttc gtagtttttc catggtgtat tcttcataat ctcattagga
      421 catgaaatgc tctaccctct gattgtacgc gtcaccaaga ttggataaaa cgttagatcg
      481 tcaaattcat agattttcgc taactcttcc ctaattcact tgggtgatgt ttctaaattc
      541 gattttagaa ataccttaat taattactat atcataagct ctgtagttga aggagtttat
      601 ttttaaactg tatctttctg atcagcagaa caaggaggtg aggaattatt ttaacttcct
      661 aacaaccgag atgatcattt tcggattaag atttgcgtat agccgctcga tggctatctc
      721 aggaggttat cttatgccgg gtagaaaaag cattgtaaag aaggaaacac atatgcttaa
      781 cagaagtcaa gcaaaatggc gccttgaaaa ttggaaatca attatcaaaa catatagaaa
      841 taaaggttac agctatccca ctatttcaag gataaaaaaa gaaatgaaaa aaataaccga
      901 gtctggcaat aaaaaaaatt agttcagtaa atagaggatt ctgcttttct agactggaga
      961 ttacttgatg gcaggtcagg aaacttatcc tttgtgctct cctctaccac tgcgctagct
     1021 tcttctataa ttttaagggc gtcttcagtc aacgtattag atccagatat ctctgcatca
     1081 ggtatttgtc cggaatctga cattatgttc ccaagtaagt cagatatttg ccctagcgag
     1141 tgatctgctt ctggcatcat cgaggagagt ccgccctgaa caccctttat gactgacatg
     1201 gccgggctca aggtaacaac tacatctcct agttctgtca ttgtattaag tctcaactgt
     1261 atctgctcta gcgccagttt cgcagaagtt accatcttat tcattttacg aacttgggac
     1321 agttctccgg ataatacttt agcgtattgg ctgtcatggt tttgcatggc atgaaccacg
     1381 cgtttgaaaa taagctgatc cttctctagc gttttagttg cgatggagtc taactttgat
     1441 atttgcatct gaagtctttt ttgagcttct tcaatccttg gctttagagg agcctgtggt
     1501 ttgattcctt ctagcagctt attacccacg ctttcactgt gaggtttaat ccacttgtta
     1561 ccaaatgaca taatgttctt agcacctgcc ttaagattac atctgcctat taaaacacat
     1621 gtgtaaatat cctagatgta actatagtta cgggcaacct tagttacaca aatacagtgg
     1681 taaaatatct ccgattggac tttctgaaac gcagtatctt cgagtgtcaa tctcaactgt
     1741 tcgccaagcc cccttcttca gccgataaag atcaaagtca agaggagac
//
LOCUS       DATLQL010000584         1017 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_675838, whole genome shotgun sequence.
ACCESSION   DATLQL010000584 DATLQL010000000
VERSION     DATLQL010000584.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1017)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1017)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1017
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_675838"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..788
                     /locus_tag="VNB68_05960"
     CDS             <1..788
                     /locus_tag="VNB68_05960"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HVD36928.1"
                     /translation="IPSVIIAYRLFVRDHIPYLAYIHDAEYSGIPGTLPKFGKDEISK
                     SLENAKTILTNSKHTAAEIETLYHVKGIPLYPGCFPSQSIARDKCDFCLFVHSIALGN
                     NFEVLYRLLQINKDIKVVIAGGKRYTWQAVYLRFKVKFRERVNFVFDPTEEVLYQLYR
                     RSKMLLHTDVENFGLSPLEAAANGTPSIVAKGSGVLEILGGSKGILTFDSNNISQLDE
                     TVTHYYGDSGKLLCLAEKAWHNAQKFNWGVHGQSLQKIVYEFI"
BASE COUNT          312 a          191 c          202 g          312 t
ORIGIN      
        1 atattcctag tgtcataatt gcctataggc tctttgtaag agatcatata ccttacctgg
       61 cctacataca tgacgcagaa tatagtggta tacccggcac tttacctaaa tttggaaaag
      121 atgaaattag taaatcatta gaaaatgcaa agactatttt aacaaattcg aaacacactg
      181 cagccgagat cgagactcta taccacgtga agggaattcc tctttatcca ggatgttttc
      241 catcacaatc gattgctaga gataaatgcg atttttgcct ctttgtacat tccatagcgt
      301 tggggaacaa ctttgaagtt ttgtacaggt tgttgcaaat aaataaagat ataaaagtcg
      361 tcattgcagg aggcaagcgc tatacatggc aagcagtcta cttgcggttt aaagtgaaat
      421 ttagagagcg agttaatttt gtatttgacc cgactgagga agttttatat cagctgtacc
      481 gtcgctcaaa gatgctattg catacagatg ttgagaattt tggtttgtct cctcttgaag
      541 ctgctgcgaa tggaactcct tctatcgtag ctaaaggaag tggcgtgtta gagattctcg
      601 ggggtagtaa aggcattttg acttttgata gtaataacat atcccagtta gacgaaacgg
      661 taacacacta ttatggagat tcaggtaaac tactttgtct tgcagagaaa gcatggcaca
      721 acgcgcagaa attcaattgg ggcgtgcatg gacagtcact tcaaaagatt gtctacgagt
      781 tcatataact gttaaaatca gaactagaat tttcccatac tccgtactct caatcattgc
      841 ggcatgatta ttaggattaa ctttaatcag tatgcacccc ataagcacgc aaatggtgtc
      901 tgaccttacg gtatcaacta taattattta tgttattaaa tgcgccacca aatccttgtg
      961 cattcttata aatttgttcc cctctgaatt cagaccaagg aggtttatgc ttactct
//
LOCUS       DATLQL010000585         1030 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2456114, whole genome shotgun sequence.
ACCESSION   DATLQL010000585 DATLQL010000000
VERSION     DATLQL010000585.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1030)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1030)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1030
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2456114"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(361..>1030)
                     /locus_tag="VNB68_05965"
     CDS             complement(361..>1030)
                     /locus_tag="VNB68_05965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36929.1"
                     /translation="VDAKTGSIAAQKSRKDRYDIANLTKTLEQIERDIQTKKLSKDEE
                     RRLVARSKEIATKLHALKLMHRREDNYRDKSSQYDTLKGKMNRLFDQKSEFGRNIGKL
                     KTNLDNLLNLRESLYEDRRKIIRSVREAGAKLEMVETQLNAIQYRKSRFHASGPKHKR
                     QHDSDISRESRIEAAQERAKRSRENQERWNVLKEAAAKKLSKGEKLSFEEMKLIFGDS
                     NSTE"
BASE COUNT          279 a          226 c          168 g          357 t
ORIGIN      
        1 aaattgatga tcaagatcag cttaatcctg ttgcctttag agccatcgaa aaaaggggct
       61 ttgccaaata ggcgggaagt gatttgaaaa atatcttgga aatactaaaa attatgaaat
      121 atgagcgcca aatcaaacat ctatcgaata tttaaggtaa accttttttg caacacaact
      181 aaaatctcat tttccaactg atgtaataaa acaatggaat taaaggataa aatctaaaaa
      241 atgaaaacac aggtttttgt atgcccatgc aaacgatcta ataggtaatc gcaggtcata
      301 cgtcggtcta ctggtatccc aaggtaatta gattcaacgc tatttatcgc attaacaaga
      361 tcattccgta gaattactat cgccaaagat aagtttcatt tcttcgaaag ataatttttc
      421 tccctttgaa agctttttag cagcagcctc ctttagcacg ttccacctct cttgattctc
      481 tctacttcgt tttgctctct cctgagctgc ttctatccta gactctcgtg atatgtcgct
      541 atcgtgttgt cttttgtgct tgggtccgct tgcatggaag cgagacttcc tatattggat
      601 tgcgtttaat tgagtctcca ccatttctaa cttcgctcct gcttctctta ctgatctgat
      661 tatttttctc ctatcttcat aaaggctttc tcggaggttc agcaaattat caagattcgt
      721 ctttaacttg ccaatattcc taccaaactc agatttttga tcaaataatc tattcatctt
      781 gccttttaaa gtatcgtact gcgaggattt atccctgtaa ttgtcttctc tccgatgcat
      841 caattttaag gcatgcaatt tagttgcaat ctctttagac ctggctacca acctacgctc
      901 ttcatctttt gacaacttct ttgtttgtat gtcacgctcg atctgctcca atgttttagt
      961 caaattcgcg atgtcgtatc tatccttccg tgatttctga gctgcaatgg acccggtctt
     1021 cgcgtcgaca
//
LOCUS       DATLQL010000586         1232 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2456617, whole genome shotgun sequence.
ACCESSION   DATLQL010000586 DATLQL010000000
VERSION     DATLQL010000586.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1232)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1232)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1232
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2456617"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            16..>1232
                     /locus_tag="VNB68_05970"
     CDS             16..>1232
                     /locus_tag="VNB68_05970"
                     /inference="COORDINATES: protein motif:HMM:NF024808.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HVD36930.1"
                     /translation="MIFDIIARSSPISNQITTRFYLGIVSILLLTISLAVANNFFLNS
                     YAQNNKEQVNLTGLFVDPADSWKDLIPSALQELNMRHPNLNIEINFTIYPYNDARTQM
                     LKSMSNGLPIDLISLDQIWLGEFANKSYIVDLTGRTKNWGGLSDWYQANLDGNLYNDK
                     VYGIWAWTDIRSIWYWKDLLNQTGIDPNSLKTWDGYIESAKKLDSALEQKGIHGIELV
                     GGPGSQNEWYPFLWMTGGDILQLKQGHPTKGSYWFPTYNSTEGVRALEFFRQLVSANV
                     KPITVDFEKEFAAKNYTVMLGGSWLPGNFVPLTKQNFEQKIGMIPMFPVLKEGTRTSS
                     IMGGWLLSIPQTSKHKELAWELITIMLKPEILSPVLAKYGYLPTQVSIGEGPYSAVLR
                     NLIPYYDQLIAMIT"
BASE COUNT          393 a          235 c          255 g          349 t
ORIGIN      
        1 aaattgaatc gcattttgat ttttgacata attgcacgtt ctagtccaat cagtaatcag
       61 ataacaacaa gattctatct tggcatcgtt tctattttac ttctgactat tagtcttgca
      121 gtcgcaaata atttctttct caattcttat gcccagaaca acaaagagca ggttaatctt
      181 actggcctct ttgttgaccc tgcggatagt tggaaagact tgattccatc agctttacag
      241 gagcttaata tgagacaccc aaatctgaac attgagataa actttacaat ttatccatat
      301 aatgatgcta gaactcaaat gttaaaatcc atgtcaaatg gtttacctat tgatctaatt
      361 tccctagatc aaatttggct tggagaattt gctaataaat cctatatagt tgacctgacc
      421 gggcgaacca aaaattgggg aggcctttcg gattggtatc aagcaaacct cgatggtaat
      481 ctgtataatg acaaagtgta tggcatatgg gcgtggacag acattcgatc aatttggtat
      541 tggaaggact tgttgaacca gacaggcatc gatcctaatt cattaaaaac ctgggatggc
      601 tatattgaat ctgcaaaaaa actggatagt gcattagaac aaaaagggat ccatggaatt
      661 gaactagttg gtggcccagg atcgcaaaat gagtggtacc cctttttgtg gatgacaggt
      721 ggagacatac ttcaacttaa gcaaggacac ccgacaaaag ggtcgtactg gtttccgaca
      781 tataatagca cagaaggtgt cagagcactt gaatttttca gacaactagt tagtgcaaat
      841 gtaaagccca taaccgtcga ttttgaaaaa gaatttgcgg ccaagaacta tacagtaatg
      901 ctcggtggat catggctgcc cggtaatttt gtacctttaa caaaacaaaa ttttgaacag
      961 aaaataggaa tgattccgat gtttccagta cttaaggaag gaacgcgtac gtcaagtatt
     1021 atgggaggat ggttgctgag catcccccag acgtcaaaac ataaagagct ggcatgggaa
     1081 ttaatcacca taatgctaaa gcccgaaatc ctttcccctg tattagcaaa atatgggtac
     1141 ctgcctacac aggtgtctat aggtgagggg ccgtattcgg cagttttgcg aaatttaatt
     1201 ccatactacg accaattgat cgccatgatc ac
//
LOCUS       DATLQL010000587         1184 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1031353, whole genome shotgun sequence.
ACCESSION   DATLQL010000587 DATLQL010000000
VERSION     DATLQL010000587.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1184)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1184)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1184
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1031353"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..635
                     /locus_tag="VNB68_05975"
     CDS             <1..635
                     /locus_tag="VNB68_05975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HVD36931.1"
                     /translation="IMRPQGMYNLVKMVHDNIDTSVSSLDVHCHNDVGLALANALAGC
                     EAGANQIHTTIDGFGERTGIPSLAETAVALSVIYGMPNDFRLHMLKDLSRTIADYTHI
                     ETPESKPIVGESAYKHKAGTHLAAILQNPSAYEILEPHLVGNRRKIVFGELAGKNGAA
                     YLLSLLGLESSKVEAEKMAKGLKELRMGDILELYLDERLERKILNDALSK"
     gene            647..814
                     /gene="lysW/argW"
                     /locus_tag="VNB68_05980"
     CDS             647..814
                     /gene="lysW/argW"
                     /locus_tag="VNB68_05980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019878 - lysine biosynthetic process via
                     aminoadipic acid [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-aminoadipate/glutamate carrier protein
                     LysW/ArgW"
                     /protein_id="HVD36932.1"
                     /translation="MIKCTECDAEIKIPSDAMENEIVTCPDCGASYELIKSNDGFAIR
                     PAQSVGEDWGE"
     gene            811..>1184
                     /locus_tag="VNB68_05985"
     CDS             811..>1184
                     /locus_tag="VNB68_05985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine biosynthesis enzyme LysX"
                     /protein_id="HVD36933.1"
                     /translation="MKGNNNKTSFFILYDQLRWEEKSLIEAAKKRDINLEVINCRENS
                     IELDKDKSIYCDDIILQRCVSYYNNLHSTAAFEGLGAKVINSLYTAIMCGNKLFTHME
                     LSKSGIAIPKAFCAFSSQSAMS"
BASE COUNT          402 a          210 c          260 g          312 t
ORIGIN      
        1 gaataatgcg cccgcaagga atgtacaacc tggtaaaaat ggtacatgat aacattgata
       61 caagtgtttc atcgctggac gtacattgcc ataatgatgt aggccttgca ctcgctaatg
      121 cacttgcagg atgcgaagct ggagccaatc aaattcacac aaccatagac ggattcggtg
      181 aaagaactgg aattccatct ctagccgaga cagcggttgc tttatccgtc atttatggaa
      241 tgccaaatga ttttagattg cacatgttaa aagatctttc aagaacaatt gcagattaca
      301 cacacattga aacaccggaa tccaagccaa tagttggaga aagtgcttat aaacacaagg
      361 caggtacgca cctagctgcc attttgcaga atccatcggc atatgaaatt cttgaacctc
      421 atctagtggg aaacaggaga aaaatagtct ttggtgagct tgcaggaaaa aatggtgcag
      481 catatttgct ttctctcttg ggacttgaat cttcaaaagt tgaggccgaa aaaatggcca
      541 aaggtttgaa agaattacga atgggggata tcttggagtt ataccttgac gaaagattag
      601 aaagaaaaat acttaacgat gcattatcaa agtagaggag atagtaatga taaaatgcac
      661 tgaatgcgat gcagaaatca aaattcctag tgacgccatg gaaaacgaaa ttgtgacatg
      721 tcctgactgc ggcgcaagtt atgaattaat caagtcaaac gatgggtttg ccatcagacc
      781 tgcacagtct gtcggagagg attggggaga gtgaaaggga ataacaacaa aacttccttt
      841 ttcattcttt atgaccaact aagatgggaa gaaaaatcgt taatcgaagc tgcgaaaaaa
      901 agagatatca atctagaggt tatcaattgt agagaaaatt ctattgagct cgacaaggat
      961 aagtccatct attgcgacga cattatcttg caaagatgtg tgagctatta taataatctg
     1021 cattcgacag ctgcttttga gggacttgga gcaaaagtga ttaactctct ttatactgcc
     1081 ataatgtgcg gaaataaatt gttcactcac atggaattgt caaaatcagg gatagccatt
     1141 cccaaagctt tttgtgcatt ttcgagtcaa tctgctatga gtat
//
LOCUS       DATLQL010000588         1108 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_501738, whole genome shotgun sequence.
ACCESSION   DATLQL010000588 DATLQL010000000
VERSION     DATLQL010000588.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1108)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1108)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1108
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_501738"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(61..1005)
                     /locus_tag="VNB68_05990"
     CDS             complement(61..1005)
                     /locus_tag="VNB68_05990"
                     /inference="COORDINATES: protein motif:HMM:NF015971.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36934.1"
                     /translation="MLRLERAKNNPVLVPDASNWLESRAVFNCAVLYDGKTIHMLYRA
                     IGEYEDYVSRIGYASSEDGLSFVRRKEVALCPEQDYERFGIEDPRLGSIQDQIYVTYV
                     VLSNYVKTHPTASTALATTNNFFDYKRQGIITVPGSDDKDVVLFPMANIENGFQKYMM
                     LHRPSRWVGPQYNTDRPSIWLGEGDSVTKFEKHSLLVKPEQSWEALKIGVGVPPLKTK
                     KGWLVIYHGVSEDKVYSAGAFLLDLKDPHIILGKTKEPILAPEEEYEKKGDVNNVVFP
                     TGACILDSHLFVYYGGADKVCCLATVELDHLLEHILSC"
BASE COUNT          310 a          248 c          189 g          361 t
ORIGIN      
        1 aataaacact caaagtgaat tttggttagt aattttatct tatttatctt aaattaaaaa
       61 tcaacacgaa agtatgtgtt ctagaaggtg atctagctca actgtcgcaa ggcagcaaac
      121 tttgtcggca ccaccataat atacaaacag atgactatcg agaatgcaag ctcctgtggg
      181 aaataccacg ttgtttacat cccctttttt ctcatactct tcctcaggtg ccaatatagg
      241 ctcttttgtc tttcctagaa ttatatgagg gtccttcagg tccagaagaa atgcaccagc
      301 actatacacc ttgtcctcgc ttacaccgtg gtatattaca agccaacctt tttttgtttt
      361 aagtggcggg acaccaacgc ctatttttaa ggcttcccaa ctttgctcag gtttaactag
      421 tagcgagtgt ttttcaaatt tggtaaccga atcaccttct cccagccaga tgcttggtct
      481 gtccgtatta tattgtggtc ctacccatct gcttggtctg tgtaacatca tatatttctg
      541 aaatccattt tctatattgg ccatcgggaa tagaacaaca tccttgtcgt cagatccagg
      601 gacagttata ataccctgcc tcttgtaatc aaagaaatta ttcgtagttg caagggcagt
      661 tgaggcggta gggtgcgttt tgacataatt cgaaagcacc acatacgtca cgtatatttg
      721 atcctgaata ctccctaatc ttggatcttc gatgccaaat ctttcatagt cttgttctgg
      781 gcataatgca acttccttcc tcctaacaaa tgaaagacca tcctcgcttg aagcgtaacc
      841 gatccgcgat acataatctt cgtattcgcc tattgctctg taaagcatat gaatagtctt
      901 cccatcataa agaactgcac aattgaagac cgctctcgat tccaaccagt tggatgcgtc
      961 tggaaccagg actggattat ttttagctct ttctagtcga agcattaagc gcttatatca
     1021 atagtaacga ttttttatta tcttatatat gttatgataa ttttccccta gaaattacct
     1081 aaacatattt ctctaatact cgtaaatc
//
LOCUS       DATLQL010000589         1555 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2099941, whole genome shotgun sequence.
ACCESSION   DATLQL010000589 DATLQL010000000
VERSION     DATLQL010000589.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1555)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1555)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1555
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2099941"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            379..>1555
                     /locus_tag="VNB68_05995"
     CDS             379..>1555
                     /locus_tag="VNB68_05995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36935.1"
                     /translation="MKSFILTLLLVAVLIPFVMASFIYHVYGVETLSELSQSDSTLGL
                     KIITPPNDKSVPVGSLTIMGTSTDNENSNCTVFVDWNNQKPFQKAIATGPYGEGDYSS
                     WTYTYSPSYHNIINGTNNLTSKLECQKNSVITSKWNSINVTGIQSESFHKSNPTSVYN
                     GGNSKVLPQLASHLKVSTNNSSQISVSKVLTVPPPRILSTLFTDLKVGKNIASPGEAQ
                     SIIIKVMDAKSLRLISGANVQLHITDGMKESEFPGVTNSKGLYNHSWTLDPTRFGMYK
                     VVANVSIPGYVPRTYSANFQVHGQLLVQVNLAKGVVNPGDAQTLTVNVLDATTKQKIS
                     GASVAGKISSSKKFSSITDGNGITSYSWNISPVSGGTISKVTLNVVHEGYSTLSKIVT
                     "
BASE COUNT          497 a          297 c          292 g          469 t
ORIGIN      
        1 gagaggacaa gatgatccct ttgaaattca tcagaccttt tgtaaagcaa agtaattgta
       61 ggatcctaat catagagcat tgtggacaca gccctcatgt aagtcattca cgcctattca
      121 attctacagt gtgtaatttt attcgagaat gacgctttaa ttttcagtta ggattcttgc
      181 gagttgatga acttcctatc attatgagaa tactctgatg aagtctattt ctataagatt
      241 gtaattttaa atgagtaatt aggctataac atgtgaagag gaaaatacta agtatttgat
      301 aagagaaaaa ttcatagtgt tatttgtcag tgagcaaatt cagacaatac ttataataat
      361 taaatcggat acacttgcgt gaaatctttt attcttactc tgttactagt tgctgtttta
      421 atacccttcg taatggcttc attcatttat catgtctacg gtgtagagac cttgtctgaa
      481 ttatcacaaa gcgatagtac tttgggacta aaaatcataa cgccgcctaa tgataaaagc
      541 gtacctgtag ggagtcttac gattatggga acgtcgactg acaatgaaaa ttcaaactgt
      601 actgtgtttg tagattggaa caatcaaaag ccattccaga aagcaatagc cacaggtcct
      661 tatggtgaag gtgactattc ctcatggact tatacttact cgccatcgta tcacaacata
      721 atcaacggta ctaataatct cacttcaaag ttagagtgcc aaaaaaattc tgtcattacc
      781 tccaaatgga acagcattaa tgttacgggt atccagagtg agtcctttca caaatctaat
      841 cctacttctg tatacaatgg tgggaatagt aaggtgcttc ctcaattggc ttcccatctc
      901 aaagtttcta caaataattc atctcaaatt tctgtttcca aggtcctcac tgtcccccca
      961 cccagaatac tgtctacctt gttcactgat ctaaaggttg gaaaaaacat tgcaagtcct
     1021 ggcgaagcgc agagtattat cataaaagtc atggatgcaa aatcacttcg actgatatct
     1081 ggtgcgaacg tacaacttca tattacagat ggcatgaagg aaagcgaatt tcctggcgtt
     1141 actaattcta aaggactata taaccattct tggacactcg atcctacaag gtttggaatg
     1201 tacaaggtag tggcgaacgt gtccatccca ggttatgttc cgcgtacata tagtgcaaat
     1261 ttccaagttc atggacaatt attggtccaa gtgaatcttg cgaagggagt ggtcaatcct
     1321 ggtgatgcac agactctaac agtcaacgta ttggatgcta caactaaaca aaaaatctcc
     1381 ggtgcaagcg tagcaggaaa aatttctagc tccaagaagt tttcatctat tacagatggc
     1441 aatgggataa cttcgtattc atggaatatc tcccccgtca gtggaggaac tataagtaaa
     1501 gtaaccttga atgtagtcca tgaaggttac tctacgttat ctaaaatagt aacat
//
LOCUS       DATLQL010000590         1005 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1566623, whole genome shotgun sequence.
ACCESSION   DATLQL010000590 DATLQL010000000
VERSION     DATLQL010000590.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1005)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1005)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1005
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1566623"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..593
                     /locus_tag="VNB68_06000"
     CDS             <1..593
                     /locus_tag="VNB68_06000"
                     /inference="COORDINATES: protein motif:HMM:NF024578.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HVD36936.1"
                     /translation="GGPLLDMQGEVIGINSAIFSTTGGFAGIGFAIPSNTIAKEVPFL
                     VKNGTYVHPWLGISGGKLSPDMAKAAGLPTNYKGVVVGSIMAGSPAEKSGLLGVTQDA
                     NGVTHLGDIITAVDGHPTKQIDDIINYIDTQKNVGDTIKLTMNRDGKIMDLTATLQAR
                     PSSSQNQQTQPGLGPIPEMPQIPGFPPLPQLPPLLP"
BASE COUNT          318 a          198 c          187 g          302 t
ORIGIN      
        1 caggagggcc acttttggat atgcaaggtg aagtgattgg catcaattct gctatctttt
       61 ctacgacagg cggttttgca ggaataggat ttgcaattcc ttcaaataca attgccaaag
      121 aagtaccatt tctagtaaaa aatggaacat atgttcatcc ttggctagga atttctggtg
      181 gtaaactaag tccggacatg gcaaaggcag caggtctacc aacaaattat aaaggggtag
      241 tagtaggctc gataatggct ggtagtcctg cagaaaaatc tggtctacta ggagtgactc
      301 aagatgctaa tggcgtaaca caccttgggg atataataac tgcggttgat ggacatccta
      361 cgaaacagat tgatgatata atcaattata ttgacacaca aaagaatgta ggtgatacta
      421 tcaaacttac catgaataga gatggaaaaa taatggacct aacagcaacc ctacaagcga
      481 gaccttcttc gtcccaaaat caacaaacac agcctgggct aggacctata ccagaaatgc
      541 cacagattcc aggattccct ccgcttccac agttaccgcc attacttcca taaaacttga
      601 ccttattttt tatttcgaag acaaattggc caagaaattc gtattataaa gagtagtaat
      661 aaagactttc cttttttaat ttcattatct tcgagtacta attcgtcgta ttctatacca
      721 attaacattc gagtagtgaa gcctatgaaa gtctcatgaa gtataattac gaaggcagat
      781 ttcctgctgc tcatgcttat gttatgtttt ctaaatttct tgtaacctat ctgacatggc
      841 taccagatga tctgataaat gagctattgc atcatatttg atttgatcac gattttttaa
      901 cttcattgaa ttcttcttct acctcgcatt gtatatccgc accttgtctc taactgaggc
      961 acattcaata atgtcagatt tgaagttggc taccatctga gaaca
//
LOCUS       DATLQL010000591         1332 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_501875, whole genome shotgun sequence.
ACCESSION   DATLQL010000591 DATLQL010000000
VERSION     DATLQL010000591.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1332)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1332)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1332
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_501875"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1332)
                     /locus_tag="VNB68_06005"
     CDS             complement(<1..>1332)
                     /locus_tag="VNB68_06005"
                     /inference="COORDINATES: protein motif:HMM:NF020976.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alkaline phosphatase D family protein"
                     /protein_id="HVD36937.1"
                     /translation="IKWTDNATDFTGNILIDNLTEGTKYFYRVWFSTTDNHINSTSMN
                     GIFKTAPNSTTSGEPISFIVGADIGGQKFCREVNKGYYIFEKMKSLSPDFYIQNGDMI
                     YAINDCPAKRPDGHQNIPGNFSGIADPNVDWKNLTQVHDVYVKHWAYNRLDPHLQNFL
                     NSTSMYSQWDDHEVINDFGGAWSYWNSLSKNRTGYHNLVNEGRNAFFNFSPIEGNPDN
                     AIKIYRSFHWGKDLDLLILDARSNRSRNDIADTPENNKTMLGKEQLAWLKEKLLNSNA
                     TWKIVSSDVPLSIPTGANASKFGRDGWANGIDLDFSSKTGFERELTEIMKFIDDNDIK
                     NVVFVTTDVHFPSVLKYSADVNGDGDPVNVYEIVSGPLSAFRFGIPGAPLPMLDPTFQ
                     PTILYVEGGISNFARIQIQKQNDGNVHLIADIIGEDGHARAGSHIDLVPQE"
BASE COUNT          379 a          285 c          248 g          420 t
ORIGIN      
        1 ttctcctgtg gcacaagatc tatatgcgac ccggctcttg catggccatc ttctccgata
       61 atgtcagcaa ttaggtgaac gttgccgtca ttttgttttt gtatctgaat ccgagcaaag
      121 ttggatatcc caccttcaac gtataaaatt gtgggctgaa aagttggatc aagcatagga
      181 agaggcgctc ctggaatgcc gaaacggaat gcactaagag gaccacttac gatttcatac
      241 acattaactg gatcaccatc accatttaca tcagcactgt actttaagac agatggaaaa
      301 tgaacatcag tagtaacaaa cactacattt ttaatatcat tgtcgtcaat gaatttcatt
      361 atttctgtta attctctttc gaaacccgtt ttcgaggaaa agtcaagatc aataccatta
      421 gcccatccat cccgtccaaa ctttgacgcg ttggcacccg taggaatcga cagaggcacg
      481 tcactgctta caattttcca tgtggcattc gaattcaata gcttctcttt caaccatgca
      541 agttgttctt tacccaacat tgtcttgttg ttttctggag tatcggcgat atcatttcta
      601 cttctgttag accttgcatc taaaattaaa agatcaagat cttttcccca atgaaatgac
      661 ctatagatct tgatcgcatt gtcggggtta ccttctatgg gcgaaaagtt gaagaacgca
      721 tttctacctt catttaccaa attatggtaa cctgttctgt tcttgctcag agaattccag
      781 tacgaccatg cgcccccaaa atcattgata acctcatggt catcccactg actatacatg
      841 gacgtgctat tgagaaaatt ttgcaaatga ggatcgagtc tgttgtatgc ccaatgcttg
      901 acatagacat cgtgaacttg agttaaattc ttccagtcta cattagggtc ggcaatacct
      961 gaaaagtttc caggaatatt ctgatgacca tcaggtcgct tagcaggaca gtcattaatt
     1021 gcgtagatca tatctccatt ttgtatataa aagtctggag acagtgattt cattttttca
     1081 aatatgtaat agcctttgtt tacttcacga cagaactttt gaccgccaat gtcagcgccc
     1141 actatgaaac taataggttc gccggacgtg gtggagttgg gagctgtttt gaatatccca
     1201 ttcattgaag tactattgat gtgattatca gtagttgaaa accaaacacg gtaaaagtat
     1261 tttgttcctt ccgtcagatt atcaataaga atatttcctg taaagtctgt cgcattatct
     1321 gtccatttta tg
//
LOCUS       DATLQL010000592         1902 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2628923, whole genome shotgun sequence.
ACCESSION   DATLQL010000592 DATLQL010000000
VERSION     DATLQL010000592.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1902)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1902)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1902
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2628923"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..548
                     /gene="cobS"
                     /locus_tag="VNB68_06010"
     CDS             <1..548
                     /gene="cobS"
                     /locus_tag="VNB68_06010"
                     /EC_number="2.7.8.26"
                     /inference="COORDINATES: protein motif:HMM:TIGR00317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008818 - cobalamin 5'-phosphate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="adenosylcobinamide-GDP ribazoletransferase"
                     /protein_id="HVD36938.1"
                     /translation="TIAILLITGMQHADALSDFADGLMVKGSKDAKRRAMSDPAVGTA
                     GAISLVVCIIGLIIAISTYNSAFKLLISIVAAEVIAKYIMVIEAGNGRSAWEGFSSPF
                     TREMKDKKKIAFATISTLIVVLTLRGYIGLISLGTGLLIAGVICHLSTKNFGGLTGDV
                     LGASNEITRLSSLLVLSLLVV"
     gene            557..1174
                     /locus_tag="VNB68_06015"
     CDS             557..1174
                     /locus_tag="VNB68_06015"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NTP transferase domain-containing protein"
                     /protein_id="HVD36939.1"
                     /translation="MMAAIMCGGKGSRMNQELTFEKPMLLFRGKPMVGHVLDALVSSK
                     RFSSVVGITSRHTTATSKYLRKLNNCVNGLHLIETSGFDYSTDLGQVIEMLKPSEIIV
                     VPSDLPILKAETINDILKSWNPEASFVSIIMEKSFIESMGLIPSIVISVEKVEYCYSG
                     ISMIDTSRILAGVEANESYIVMNRADIAFNINTMEDLKAANAYLN"
     gene            complement(1171..1443)
                     /locus_tag="VNB68_06020"
     CDS             complement(1171..1443)
                     /locus_tag="VNB68_06020"
                     /inference="COORDINATES: protein motif:HMM:NF013803.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S27e"
                     /protein_id="HVD36940.1"
                     /translation="MPEKNDERRNEDAKVRNSTIILVVIMKKENILIPKPKSKFLSVQ
                     CPECQEKMIIFSHTTIDIPCKSCGKLIAVKRGGKARILGKLLAALD"
     gene            complement(1383..1661)
                     /locus_tag="VNB68_06025"
     CDS             complement(1383..1661)
                     /locus_tag="VNB68_06025"
                     /inference="COORDINATES: protein motif:HMM:NF004425.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L44e"
                     /protein_id="HVD36941.1"
                     /translation="MKMQKEFRKFCPKCKTHTSQSVAIYKKGKDRKTALGARRHAEDK
                     KGYGGQKFPELKRTAKTTKKITLKYTCKTCQRKTMKEGMRMRKLEIQP"
BASE COUNT          554 a          352 c          391 g          605 t
ORIGIN      
        1 taacaatcgc catactgcta attacaggaa tgcaacatgc tgatgcactt tcagattttg
       61 cagatggttt gatggtgaag ggaagcaagg atgcaaaacg acgggccatg tccgatcctg
      121 cggtaggtac agcaggtgca atatctttag ttgtctgcat cataggattg ataatagcca
      181 tttctactta taattctgct ttcaaacttt tgatcagtat agtagctgca gaggtaatag
      241 ccaaatacat aatggtcata gaggccggca acggtagatc agcttgggaa ggatttagct
      301 caccctttac aagggagatg aaagacaaaa agaaaattgc atttgccacc atatctacac
      361 tcatagtagt tttaaccttg agaggttaca ttggattgat ctctttggga acgggactgc
      421 ttatcgccgg tgtaatctgc cacctttcaa ctaaaaattt tgggggactg accggtgatg
      481 tacttggagc ctccaatgaa attacccgtc tatcatcact attggtgctg tctctattgg
      541 tggtatgaat cgccccatga tggccgctat aatgtgtggc ggcaaagggt ctaggatgaa
      601 tcaagaatta acgtttgaaa aacctatgct cctttttaga ggaaaaccta tggtaggaca
      661 tgtccttgat gcattggtat cttcaaagag atttagttcg gtagtaggca taactagccg
      721 ccatacaact gccacatcga aatatttgcg taagctcaat aattgcgtga atggacttca
      781 tttaatagaa acatctggat ttgattatag tacggatctt ggacaagtta ttgaaatgtt
      841 aaagccctca gaaataattg ttgttccttc tgatcttcca atactgaaag cagaaacaat
      901 aaatgacatt ctgaaaagct ggaatcctga agcaagtttc gtgtctatca tcatggagaa
      961 aagtttcatc gaaagtatgg gattaatacc aagcattgta atttctgttg agaaagttga
     1021 atactgttat tctggaatct ctatgatcga cacgtccaga attctcgctg gggtagaagc
     1081 aaatgaatca tatattgtga tgaatagggc agatatagct tttaacataa acactatgga
     1141 agatcttaag gcagcaaacg cctatcttaa ttagtccaga gcggctaaca actttcccaa
     1201 tattcgtgcc ttccctcccc tctttacagc tattagtttt ccacaagatt tacatgggat
     1261 atcgattgta gtgtgagaga aaattatcat tttttcctga cattcagggc actgcacaga
     1321 caaaaacttg cttttaggtt ttggaatcag tatattctct tttttcataa ttaccactaa
     1381 tattatggtt gaatttctaa ctttcgcatc ctcattcctt ctttcatcgt ttttctctgg
     1441 caagtcttgc acgtatattt tagagtaatc ttttttgtcg tctttgcagt tcgtttgagt
     1501 tctgggaatt tctggcctcc gtatcccttt ttgtcttcag catgacgacg tgcacccaag
     1561 gcagtttttc tatccttgcc ctttttatat atagcaacgg actgcgaagt gtgggtctta
     1621 cattttgggc agaacttgcg aaattccttc tgcattttca tatctgaaag atcttgaatg
     1681 ccggtaattt aaggacatcg tactgattcg taataaacta agggaattgg acagcatata
     1741 aaaggtgaag atacatgata ggggactgtc actcgacctt ccaaaatggg cgataatgca
     1801 ttttttgaga ttatcttgag aaaatctaat atactgatta ctttatacca tgactaataa
     1861 tgttcgatag cctgattcag cagatatatg tgagtgtaga ga
//
LOCUS       DATLQL010000593         1026 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1566886, whole genome shotgun sequence.
ACCESSION   DATLQL010000593 DATLQL010000000
VERSION     DATLQL010000593.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1026)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1026)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1026
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1566886"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(279..>1026)
                     /locus_tag="VNB68_06030"
     CDS             complement(279..>1026)
                     /locus_tag="VNB68_06030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HVD36942.1"
                     /translation="EIWLTSTDNGCYGKDAGSNIVDLLESCTDIDGQYKIRVGMMNPM
                     FLSPILDRLIQVFVENEKIFKFLHIPVQSGSERILRKMKRGHTAKTFSDLVASFRTKV
                     PKITIATDVIVGFPSETEHDFYETTELINETQPDIVNASKYSARPGTAATVEKQINTT
                     VVKKRTKQLHHLIDMTSRKRNSIWSKWNGEILIDERRGNKVQGRNYAYKPVVVTGNLN
                     IGTHAFVYISGYTNHVLEGTINFHGVDETA"
BASE COUNT          263 a          218 c          182 g          363 t
ORIGIN      
        1 agaagggttt atccagggtt tcgagttgat aaatattgag cagttgtgct cattaaaatc
       61 cttcttatca ttgcttatta gaacgcactt acatcctatc gaattgctgg attcaactgc
      121 caccttgcac cctgcaccac ctatccctat cacgataaca ggatgcctta tctcaagatt
      181 tttattgtgt tgtatggcgc ttcccccaca aatgaatatt tcaggatatt agttaaagtt
      241 tgtctattaa agatgaaaac gcaaattgtt gaaaagattt aagctgtttc atccactcca
      301 tgaaaattta tagtgccttc taaaacgtga tttgtgtagc ccgatatgta aacaaaagca
      361 tgcgttccta tatttagatt tcctgttact actaccggtt tgtaagcata atttcttccc
      421 tgcactttat tccctcttct ttcatcgatt agtatttcac cattccactt actccatatc
      481 gaattccgct tcctcgatgt catgtcaatt agatgatgca attgcttagt tcgcttcttg
      541 actactgttg tattaatttg tttttctact gttgctgcag ttccaggtct agcgctatat
      601 tttgaggcgt ttacgatatc gggctgagtt tcatttatta attcagttgt ctcgtagaag
      661 tcgtgttctg tttcagatgg aaaacctacg attacatctg tggcgattgt tatcttgggg
      721 accttcgtgc gaaaggatgc tactagatca gagaaggtct tagcggtgtg tcctcttttc
      781 attttcctta agatgcgttc acttccactc tgcaccggaa tgtgtaagaa cttaaagatc
      841 ttctcatttt caacgaacac ttgaattaag cgatcaagta tgggagacag gaacattggg
      901 ttcatcatcc caactcttat cttatattgt ccatctatat cggtacaaga ttctagcaaa
      961 tccacaatat tgctccctgc gtcttttccg tagcatccgt tatcagtaga tgtaagccag
     1021 atctct
//
LOCUS       DATLQL010000594         1091 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_502106, whole genome shotgun sequence.
ACCESSION   DATLQL010000594 DATLQL010000000
VERSION     DATLQL010000594.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1091)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1091)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1091
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_502106"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            29..>1091
                     /locus_tag="VNB68_06035"
     CDS             29..>1091
                     /locus_tag="VNB68_06035"
                     /inference="COORDINATES: protein motif:HMM:NF012766.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HVD36943.1"
                     /translation="MFKCRRERILSYLSDGGFEGAVMFTPENIFYFTGFWGESIAICT
                     RDGVKLFVPQLEVSRAETESFDCEIFSTERGEDSTKSLYPYLSYSKFCSDCNDFKSID
                     SIHKKISEKNFICDSQPFMDVRSVKDEKEIGMIKKSSEIIDRLYQVCVEEIKVNLSEK
                     ELQAKLICEATNRGGTFPCYPFSLNPFIIASGPNGALPHAEVSDRSFCEGDLVVVDLT
                     IRHRGYVSDATRTFSLGGLSEEKIRVYDIVKKSQEAGLLAAKSNVIGHEIDLVCRNLI
                     QECGYGKNFIHSTGHGVGLQVHEKPWIRPNDNEPLREKMVITIEPGIYIKSKFGVRIE
                     DTVAIKGNNYHNNDVLTKIT"
BASE COUNT          357 a          190 c          232 g          312 t
ORIGIN      
        1 gataaaagcg aacaatatta ttaaaaccgt gttcaagtgt cgtcgagaaa ggattctttc
       61 ttatctttca gatggtggtt ttgagggtgc cgttatgttt acaccggaaa acatctttta
      121 cttcacagga ttttggggtg aatcaatagc aatatgtact cgcgacggcg tgaaactctt
      181 tgtccctcaa ctggaagttt cacgagcaga aacagaatca tttgactgtg aaatattttc
      241 gactgagcga ggtgaagatt ctacaaaatc cttgtaccct tatttgtcct attccaaatt
      301 ctgttcagat tgcaacgact ttaaatcaat cgattcaatt cataaaaaaa taagtgagaa
      361 aaacttcatc tgtgattccc aaccattcat ggatgttagg agcgtaaaag atgaaaagga
      421 gatagggatg ataaaaaagt cttccgaaat tatcgataga ctctaccagg tatgtgttga
      481 agaaataaag gttaatttat cagaaaaaga actgcaagca aaacttattt gcgaagcaac
      541 taacagagga ggcaccttcc catgttatcc gttctcttta aatcccttta tcatagcttc
      601 aggacctaat ggtgctcttc cccatgcgga agtatcagat cggtcatttt gtgaaggtga
      661 cctggttgta gttgacctaa ctattcgtca caggggctac gtttctgatg caacacggac
      721 attctcgtta ggtgggctat cggaggaaaa gatacgagtg tatgatatcg tgaagaagtc
      781 acaggaagct ggacttcttg cggctaaatc taatgttata ggtcatgaaa ttgaccttgt
      841 atgcagaaac cttatccagg agtgtgggta tggcaaaaat ttcattcatt ctactggtca
      901 cggggtggga cttcaagtac atgagaaacc gtggatacgt cctaatgata acgaaccatt
      961 gcgggaaaaa atggtaatta ctattgaacc tgggatatat attaaatcaa aattcggagt
     1021 aagaatagaa gatactgtag caattaaagg aaacaattac cataataatg acgttttgac
     1081 caaaatcaca a
//
LOCUS       DATLQL010000595         1144 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_143568, whole genome shotgun sequence.
ACCESSION   DATLQL010000595 DATLQL010000000
VERSION     DATLQL010000595.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1144)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1144)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1144
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_143568"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..279)
                     /locus_tag="VNB68_06040"
     CDS             complement(<1..279)
                     /locus_tag="VNB68_06040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl diphosphate synthase family
                     protein"
                     /protein_id="HVD36944.1"
                     /translation="MTIIDLLKKNSFYGLYERKLESQIKKEPLPNHIAIILDGNRRWA
                     KYHIWATRAGHNSGADKAEELLNWIHDLRIKITTLFVLSTENLTRDETE"
     gene            complement(327..>1144)
                     /locus_tag="VNB68_06045"
     CDS             complement(327..>1144)
                     /locus_tag="VNB68_06045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF373 family protein"
                     /protein_id="HVD36945.1"
                     /translation="ISQFKAEGVVIVSDGEDDETVIPIIQTIVPVISIQRIIIRHSRS
                     VEYSYAVLGRYIKMLVYDSRYSKFFLGVPGALLIASGLATVFGFTREALAIVLSILGA
                     AFVMRAFDIDKALGSLSRPTPSSFIRIFSTFAGIMIILVAIFNGLSSIPSGLIESNVA
                     MTKLITNRLVVGSFVHGTVTLLWIGIATIFGGMLLSNWFKGSIRIMSDMLRLVVLGLI
                     YIPVVQFTSVLTEGASPFNLISSLLVGLAITLVAATFLFQYFRNKKGGEELKH"
BASE COUNT          347 a          238 c          210 g          349 t
ORIGIN      
        1 ttcagtctcg tctcgagtta aattctctgt cgaaagtacg aacagagtag ttatttttat
       61 ccggagatca tgaatccagt tgagaagttc ctctgctttg tctgcaccac tattatgtcc
      121 tgctcgggtg gcccatatat gatatttcgc ccatcttctg ttaccatcta ggattatagc
      181 aatgtgatta ggtagcggct ccttcttaat ttgggactca agcttacgtt cgtaaagacc
      241 gtaaaatgaa tttttcttca atagatcgat tatggtcata tctaattatg cgtgtccagg
      301 tagcgaagac cattacatta gatgacttag tgctttaact cttccccgcc ttttttattt
      361 ctaaaatatt ggaataagaa tgttgccgct actaacgtga tagccaatcc cactagcaat
      421 gaagatatga gattgaatgg gctagcccct tctgtcagga ctgatgtaaa ttgaactact
      481 gggatataga tcaatcctaa taccactaac cttaacatgt ctgacatgat tcgaatgctt
      541 cccttaaacc aattgctcag aagcattcca ccaaatattg ttgctattcc aatccagaga
      601 agggttactg tgccgtgaac gaagcttccc actacgagtc tgttagttat tagtttagtc
      661 atggcaacat tagattcaat taaaccagat ggaatgctag atagtccatt aaaaattgca
      721 acaagtatga tcattattcc tgcaaaagtg gaaaagatac gtatgaaact tgaaggtgtg
      781 ggcctactca aggatcccaa cgctttgtct atgtcgaaag ctctcatcac aaatgctgct
      841 cccaagatgc ttaggacgat agcaagtgcc tctctagtaa atccaaaaac agtagccaga
      901 ccgctagcaa taagtaatgc tcctggtact cccaggaaaa attttgaata tctagaatcg
      961 tagaccaaca tctttatgta acgtcccaaa acagcgtaag agtattcaac acttctacta
     1021 tgcctaatta taattcgttg aatagaaata acgggcacga tggtttgtat tatgggaatt
     1081 actgtttcat catcttcacc atctgaaaca atgacaacac cttctgcttt gaattgtgaa
     1141 atta
//
LOCUS       DATLQL010000596         2176 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_856868, whole genome shotgun sequence.
ACCESSION   DATLQL010000596 DATLQL010000000
VERSION     DATLQL010000596.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2176)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2176)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2176
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_856868"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..704
                     /locus_tag="VNB68_06050"
     CDS             <1..704
                     /locus_tag="VNB68_06050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="UbiD family decarboxylase"
                     /protein_id="HVD36946.1"
                     /translation="VDIEVPASAEIVLEGYVDPSEINIEGPFGDHTGYYTPPEPYPTF
                     TLTGMMMRKNAIYLTTVVGKPILEDAFIGKVIERAFLPLIRIFQPEVMDFSMPAAGWF
                     QGLALVSIKKRYPGQAKKVMMGLWGMGQLSLTKIIIVVDEDVDVHNVNDVIWAVTTRS
                     DPKRDTILIDNSPTDTLDPASSLLNLGSKMGIDATKKTREEGYLRPVQEEALPDEETI
                     QKVTERWKEYDLRTG"
     gene            858..1709
                     /gene="purC"
                     /locus_tag="VNB68_06055"
     CDS             858..1709
                     /gene="purC"
                     /locus_tag="VNB68_06055"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004639 -
                     phosphoribosylaminoimidazolesuccinocarboxamide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HVD36947.1"
                     /translation="MRLIHSGKVKDVYDVDEKNILFHFTDRVSAYDVPMITPIVGKGE
                     ILCKFAEFWFNLLRVKNHMIRLERTDKMLVKRLNMIPIECVVRGYLYGSLFDRYKHGQ
                     LPHLESFVANPQLASKLKLPIFDPTTKSNIHDRPISEKEILDQQILEVNELQYIKNTS
                     ISLYNHMVDLADRSGFIIADVKFEFGRDPNNGQIILADSVGPDEFRVWLKLQYAPGIV
                     QESYDKQYLRDWLTKIGFKDQVDMLGKNGDKPVPPPLPKSVVQELLRRYIYVYEKISS
                     TQGSGAS"
     gene            complement(1750..>2176)
                     /locus_tag="VNB68_06060"
     CDS             complement(1750..>2176)
                     /locus_tag="VNB68_06060"
                     /inference="COORDINATES: protein motif:HMM:NF015960.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF371 domain-containing protein"
                     /protein_id="HVD36948.1"
                     /translation="NAILQDEISFYGHPNIISSHPTTMEITKDTHLTRRGNCIVGVRA
                     SKACSQLQQNIRSNLCKDEGVVKIELIVEPYSFSIFGRSSSKLILSHHHDIVIRKSSY
                     VDSRTLSIQCNMSSLDVPRSIIYLLQDSNTMGSMRITVE"
BASE COUNT          688 a          405 c          464 g          619 t
ORIGIN      
        1 cagtagatat agaagttcca gcttcggcag agattgttct tgaagggtat gtagatccaa
       61 gtgaaattaa tatcgaaggt ccattcgggg accacacagg atactacaca cctccagaac
      121 cttatcccac atttactcta acaggaatga tgatgcgaaa aaatgcgatt tacttgacca
      181 ccgtagtagg gaaaccgatc ttagaagacg cttttattgg gaaggttatt gaacgcgctt
      241 tcttaccatt gattaggatc tttcaacccg aagttatgga tttctcaatg ccagcagccg
      301 gatggtttca gggcctagca ttagtatcaa ttaagaaaag atatccaggc caagccaaga
      361 aagtcatgat gggcctatgg ggtatgggcc aactgtcttt aacaaaaatc attattgttg
      421 tagatgagga cgttgatgtg cataatgtca acgatgtgat atgggcggta actacccgat
      481 ctgaccctaa aagagacacg atcttgatag acaactctcc aactgacacc ttagatccgg
      541 cttcctcact acttaatttg ggatccaaaa tggggattga tgcaacaaag aagactagag
      601 aggaaggcta tctgcggccg gtacaagaag aagcgttacc agacgaggaa actattcaaa
      661 aggtaactga aagatggaaa gaatatgact tgagaactgg ctgaggggta agaagtgtgt
      721 cgtatgttac caccttgaag ttgtgtattt tttatctttt gatgaagtaa ggtgtccatc
      781 ttactcaact ttgctaaaat catgattttt cacagaccaa gaaattaata tttagtagga
      841 tagtacccat ccgcataatg agattaattc actccgggaa agtgaaggat gtttatgatg
      901 tcgatgaaaa aaatattctt tttcatttta cggacagagt gtcagcttat gacgtcccta
      961 tgataacacc catagtggga aaaggggaga ttttgtgcaa atttgccgaa ttttggttca
     1021 atttgctgcg tgtcaagaac cacatgatta gattggagag aaccgataaa atgttagtaa
     1081 aaagattaaa catgatccca attgaatgtg ttgtaagggg atatctttat ggaagtttat
     1141 ttgatagata taagcatggc caacttccac accttgaatc ttttgtggca aatccacaat
     1201 tagcctcaaa gttaaaattg ccaatatttg atccaactac gaaatccaat attcacgatc
     1261 gtcccatttc ggaaaaggag attctggatc agcaaattct agaagtcaac gagcttcaat
     1321 atattaaaaa tacttcaata agtttgtaca atcatatggt ggacctagct gaccgatcgg
     1381 gcttcataat agctgacgtg aagtttgaat ttggcagaga tcccaacaat ggccaaataa
     1441 tccttgcaga ttcagttggt cctgacgagt ttagggtatg gcttaagtta caatatgcac
     1501 caggaattgt ccaagaaagc tatgacaaac agtatcttag agattggctg acaaaaattg
     1561 gattcaagga ccaagtagat atgcttggca aaaatggaga caaacctgtc ccgccacctc
     1621 ttccaaaatc agttgtccag gagctcctta gaaggtatat ctacgtttac gaaaagatat
     1681 cttctacgca aggatctggc gcatcttgat ttagtaatca ataatttcat aattcatcca
     1741 acgatttatt tattccacgg tgattcgcat actccccatg gtgttggaat cttgcaacag
     1801 gtagataata ctacgaggaa catccaacga agacatgtta cattgaatag aaagcgtacg
     1861 actgtccaca tagcttgatt ttctgatgac tatatcatgg tggtgagaaa ggatcaactt
     1921 gctactactc ctaccaaaga tgctgaatga ataaggctca acaattagtt ctattttgac
     1981 tacgccttcg tccttgcaaa gattacttcg aatattctgt tgtagctgag aacaggcttt
     2041 ggatgcacgc acgcctacga tgcaattgcc acggcgcgtc aggtgagtat ctttcgttat
     2101 ttccatcgta gtagggtgag acgaaatgat atttggatgt ccgtaaaagc ttatttcgtc
     2161 ttgcaatatt gcattt
//
LOCUS       DATLQL010000597         1006 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2629213, whole genome shotgun sequence.
ACCESSION   DATLQL010000597 DATLQL010000000
VERSION     DATLQL010000597.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1006)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1006)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1006
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2629213"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            218..766
                     /locus_tag="VNB68_06065"
     CDS             218..766
                     /locus_tag="VNB68_06065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36949.1"
                     /translation="MFKNLFGRGNGRARGIGIGEWAGRRFWESRQFYSAYIALFIAVS
                     NWITIQYRLLLENIPIFNTLFSQLWVFLIVATIVFTVISILGGHYIHRKRQFRLEQAV
                     ATEENPYLYRSAPGKEKDLMIPVTILQLEAIEAILKSNNSLTDEKKKQIEIFKQDLIR
                     LSNGLSIGGFTKTDTKKVVTPS"
BASE COUNT          323 a          169 c          233 g          281 t
ORIGIN      
        1 ttgcgatgga gcaacattgc aaaagagcac attgaattct tttcaggttt gatcacccaa
       61 tacaacaatg aatcagctac cacatacgat aataatagta gaagaagacg agctttatga
      121 gccgacctcg taacaatcgg acgtaccttt ttaaagtgta ttgttctatt cctaagaata
      181 atatgtgtta tacgcctgct atatgatagc aaaatatatg tttaagaatt tattcggtcg
      241 tggtaatggt cgggctcggg gaataggaat aggagaatgg gcaggccgaa ggttctggga
      301 atctagacaa ttttactcag cttatattgc gctattcata gcagtatcaa actggataac
      361 gattcagtac aggctacttc ttgaaaatat tcctattttc aatacgcttt tctcgcagct
      421 atgggtattt ctaattgtcg caacaatagt gttcacggtc attagcatac ttggaggtca
      481 ttatatacat cgaaaaaggc aattcaggtt agagcaggca gtagccacag aagaaaatcc
      541 ttatttgtat aggtcagctc caggaaagga aaaagatttg atgataccag tgacgatcct
      601 acagttggaa gcgatagaag caatcctaaa atcaaacaat agtttaacag atgaaaagaa
      661 aaagcaaatt gaaatcttta agcaagatct gattaggctt tccaacggtt tgtcgatagg
      721 ggggtttacc aagacagata ccaagaaggt ggtcactcct tcgtaatgaa gatgtgggga
      781 taatgatggg atattgatgt ttgtaattct ttgtaatact atttggccaa aggaagataa
      841 cgcatgaagg tgctgatggt ttctacagag tatcctccta tgcgaggagg tgttgggcgc
      901 tattcagcta agctcgttca agctttgcgc aaaacgggca ccggaattga agtggatgtg
      961 gcctgcaatg aagatggaaa tggcgaatac agaggtattt ctccac
//
LOCUS       DATLQL010000598         1371 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_502353, whole genome shotgun sequence.
ACCESSION   DATLQL010000598 DATLQL010000000
VERSION     DATLQL010000598.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1371)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1371)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1371
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_502353"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..380)
                     /locus_tag="VNB68_06070"
     CDS             complement(<1..380)
                     /locus_tag="VNB68_06070"
                     /EC_number="2.7.8.26"
                     /inference="COORDINATES: protein motif:HMM:NF014685.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008818 - cobalamin 5'-phosphate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0051073 - adenosylcobinamide-GDP
                     ribazoletransferase activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobinamide-GDP ribazoletransferase"
                     /protein_id="HVD36950.1"
                     /translation="MILKSLEAILSFLTILPIVDKSTAIDKPTNLSDIYYIAKNMYLF
                     PVAGAIIGILIGSLAYGLFFYVQPALLGLIITSALIILTGASHVDALADFADGLMVKG
                     GKELRHKAMQDPGNGSAGIAAIVL"
     gene            complement(370..1350)
                     /locus_tag="VNB68_06075"
     CDS             complement(370..1350)
                     /locus_tag="VNB68_06075"
                     /inference="COORDINATES: protein motif:HMM:NF002281.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin biosynthesis protein"
                     /protein_id="HVD36951.1"
                     /translation="MIIEYLLISLGGGVLLDLLLGDPPNRYHPVAWLGIVIEFFVPRL
                     KEDNYESSRKETANGTVFACLLVVISGTLLQYAMVLSIHFLGIIVFIVFGTLIVKVTI
                     SIRGMEKHALEIVEALQKCDLQHARHRLSLIVRRDTKDLDEQHLLSGIIECVGESIVD
                     GILSPLFYYSLLGPFGAFTYRTINTLDSMVGYTDHYHKNIGWMSARLDTFANYIPARI
                     AAVLIIISAMIFGADWKNSIQILLRDRNKTSSCNAGYPMATMAGALRIKLEKVGCYTL
                     GDGYDVISFEKCRTSLHIMKLATLLFCVLFVVPLMLVLSYLGWWNLLFDS"
BASE COUNT          447 a          284 c          253 g          387 t
ORIGIN      
        1 tataaaacaa tagctgcaat tccagcggaa ccattaccag gatcctgcat tgccttgtgt
       61 ctaagctcct ttcccccctt taccatcaaa ccatctgcga aatctgccaa agcatcaaca
      121 tggcttgcac ctgtaagaat tattaatgcg ctggtaatga taagtcccag taacgcaggc
      181 tgaacataaa aaaaaagacc atatgctagg cttccaatta aaattcctat tattgcccca
      241 gctacaggaa ataggtacat gtttttggca atataataaa tatcactgag attggtgggt
      301 ttgtcaatag ctgtagattt gtctacaata ggaagtatag ttaaaaatga aagtatcgcc
      361 tcaagggatt taagaatcaa ataagagatt ccaccaacca aggtaagaca agaccaacat
      421 taatggtaca acgaaaagta cgcaaaaaag aagtgtagcc aatttcatta tatgtagtga
      481 agttctgcat ttttcgaagg agataacatc atatccatct ccaagtgtat agcagcctac
      541 cttttctagc tttattctca aggcaccagc catggttgcc ataggatagc ctgcattaca
      601 gcttgatgtc ttattgcggt cacgtagcaa aatttggata gagttcttcc agtctgcgcc
      661 aaaaatcata gccgagatga taattaatac tgctgcaatt cttgcaggta tataattggc
      721 gaaagtatcc aacctcgcgg acatccagcc aatatttttg tggtaatgat ctgtatagcc
      781 taccatagag tcaagagtat taatggttct atatgtaaaa gctccaaagg gacctaatag
      841 tgaataataa aagaggggcg aaagaatacc gtcgacaata ctctctccga cgcattcaat
      901 tatccctgaa agcaaatgtt gctcgtctag atcttttgta tctcgtctga ctatcaaaga
      961 taagcgatgt cttgcatgct gcaggtcgca tttttgcaac gcctcaacaa tttcaagagc
     1021 atgtttctcc attcctctta tagaaattgt aactttcacg atgagtgttc cgaatacaat
     1081 gaaaacaatt atccctaaaa aatgaatgct taagaccatg gcgtattgaa gtagagtccc
     1141 tgaaattaca accaataaac acgcaaaaac agtaccgttt gcggtctcct ttcttgagga
     1201 ctcatagttg tcttccttca gccgcggtac aaaaaattcg ataactattc ctagccaagc
     1261 gactggatga tatcggtttg ggggatcgcc taagagaagg tctaataaaa caccaccacc
     1321 aagtgatatg agcaggtatt ctattatcat ttatctttta ttttagacct a
//
LOCUS       DATLQL010000599         2934 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1920431, whole genome shotgun sequence.
ACCESSION   DATLQL010000599 DATLQL010000000
VERSION     DATLQL010000599.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2934)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2934)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2934
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1920431"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(58..747)
                     /locus_tag="VNB68_06080"
     CDS             complement(58..747)
                     /locus_tag="VNB68_06080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36952.1"
                     /translation="MSSFSEHDIRRAAEIRELLIKEISEKEEELEKLRNMLLLVDAIL
                     KGGSFKPASTISQGDRSAKFEVKSSIGSEGAHTNENQESIITEKPVPVARSTIRNDPY
                     YVEEIESKELRRVRDNLLLANSDITSANIKITPVENLSLNINVSPFRTFFLNRILDGM
                     KSKDNEKIERGEIEESNCLDYQLDTDTEGTIRSITISNYRERERLQEILSTVTWVMSK
                     MVEKGSHQTNG"
     gene            complement(1245..2063)
                     /locus_tag="VNB68_06085"
     CDS             complement(1245..2063)
                     /locus_tag="VNB68_06085"
                     /inference="COORDINATES: protein motif:HMM:NF014075.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-hydroxymethylpterin diphosphokinase MptE-like
                     protein"
                     /protein_id="HVD36953.1"
                     /translation="MSHYKLMHIQDFNTKTNKQSIKNHFAILWVKFDDWFPYYQEIRN
                     EFGYSTEKDQNAAYLLSRMIVRRSIDIKKLEKKIRGRDVLAIGAGPSLEENIDFIRRS
                     KKHVKVVADGAVEALIKNKIKPDVVVSDLDGNPTFLKKAGKLGAIMVIHAHGDNEDAV
                     TKLVPKLRNIIGSTQVMPVEKVYNFGGFTDGDRCVFMAEEMGAKSIVLVGMDFTDQTT
                     KYSKGKTNNEKIKRRKLKQAKRLLEILSKRSKSMLFINSRTRIKGFAKLGSMKP"
     gene            2191..2508
                     /locus_tag="VNB68_06090"
     CDS             2191..2508
                     /locus_tag="VNB68_06090"
                     /inference="COORDINATES: protein motif:HMM:NF013209.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HVD36954.1"
                     /translation="MEGKVYFDPRFKRLLWYLIGTTKGGVTRARILEMLNFRPSNTNQ
                     IASELRLDYKTVVHHLEILSKNGLVITDNRDEYGATFFLTPLMEKNYSAFQEILSKIS
                     VSR"
BASE COUNT          824 a          604 c          517 g          989 t
ORIGIN      
        1 cttatacgtc tacatatcag gtggctgtac tgcgatccaa aatccaatac tataatctta
       61 tccatttgtt tggtgacttc ctttctccac catcttggac atgacccatg ttactgtgct
      121 aagaatctcc tgcagtcgct ctctttctcg gtagttagat atggtaatag atcttatagt
      181 tccctcagta tctgtatcta attgataatc aagacagtta gattcctcga tttcaccgcg
      241 ctctattttt tcgttgtctt ttgacttcat tccatctaaa atcctgttca agaaaaatgt
      301 tctaaaagga gagacgttga tattgaggga caaattctca acaggagtga tctttatatt
      361 cgctgaagta atgtcggaat ttgctaggag aaggttatct ctaacccgtc gcagttcttt
      421 actttcaatc tcttcaacgt aatatggatc gtttctgatt gtcgatcttg ctacggggac
      481 cggcttttct gtaattatgc tttcttgatt ttcatttgta tgtgcccctt ccgatccgat
      541 tgaagatttc acttcgaact ttgcactacg atccccctgt gaaatggtag aggcaggttt
      601 gaaactgcca cctttcaaga tggcatctac aagcaataac atattacgaa gtttttcaag
      661 ctcctcttcc ttctcagaga tttccttgat cagcaattcc cgtatctcag ctgcgcgacg
      721 aatatcatgt tcagagaagc tagacatgtg cggccaattt ttaacgagaa ggtattataa
      781 tggtttttca cgattaaatg agaactacta acgatcgtgt atagcagagg ttgattttgg
      841 acttgaaacg tattctatag gcgtgtgtat ccccacatca aacagcgggt cttgtgaacg
      901 gacaacaaac aattttctgt tatgacctta cgtcatgcgg tatttagcag aaggaacact
      961 ataccttcct gtctattgat catatgaggc gattcaaacc tgattaatgc gcaacaatca
     1021 actctggggc tatacggatg ttcccataca cggtatttct aaggggaata atactatcca
     1081 tttaatcggt agacaatttc cttttgcttt ttactaccat cacaaacttt ccatctgcga
     1141 atcataatat cggaatcccg ttttctctta tttctcttct atcttgcaca tcaaacgaaa
     1201 cttgtatgct ctaaacagga caacctctag atcctactta tctctcatgg tttcatagaa
     1261 cctagtttgg caaaaccctt aatccttgtt cttgaattaa taaacaacat agatttagat
     1321 cttttggata gtatttcaag caatctcttg gcttgtttta gctttcgtct cttgatcttt
     1381 tcattatttg tcttaccctt agagtatttt gttgtctgat ctgtgaaatc catccctact
     1441 aagactatac ttttcgcgcc catttcctca gccataaaga cacatctatc tccatcagta
     1501 aatccaccaa aattatacac cttctctaca ggcataacct gagtagatcc tattatattt
     1561 ctcaactttg gaacaagctt ggtgacagca tcttcattat ctccatgagc atggataacc
     1621 attattgctc ccaattttcc ggccttcttt aaaaaggtgg gatttccatc aaggtcagat
     1681 acaacaacgt caggtttaat cttgtttttg attagcgcct ctacggcacc gtccgctaca
     1741 actttaacat gtttcttact tcgtctaatg aaatcgatat tttcctcgag gcttggacca
     1801 gcaccaattg ccaggacatc tctgccgcga atcttcttct ctaatttttt tatatcaatt
     1861 gatctcctca ctatcattct gctcaacaaa taagcagcat tctgatcttt ctctgtacta
     1921 tatccaaact catttcttat ttcctggtaa tacggaaacc aatcatcgaa tttcacccat
     1981 agaattgcaa aatggttctt aatagattgt ttgtttgttt tagtgttaaa atcttgaatg
     2041 tgcatcaatt tgtaatgtga catgctgaac caaaaactgg aaacttccgt gagcaacttt
     2101 atattaacgg ctaagcgtaa ttcattgtgc gttcagaaag ttcagcagtt ttcgtcatag
     2161 ttataaaaaa aaccatgtca tcgaggggga atggagggaa aagtgtactt tgatccccgg
     2221 tttaagagac ttctttggta cttgatcggg acgaccaaag gaggagtcac tagagctcgt
     2281 attttggaaa tgcttaattt tcgcccgtca aacacaaatc aaatcgcctc tgagttaagg
     2341 ttagactaca agactgtggt acatcatctt gaaattcttt caaagaatgg gctggtgatt
     2401 acagataata gagatgaata tggagccact tttttcttga ctcctctcat ggaaaagaat
     2461 tattctgctt ttcaagagat attgtcaaaa attagtgtaa gtaggtgacc gttgatgtcc
     2521 tgacaaacat agtctgtaaa atgaatcact tcatttttag cttgaaatag gataaatcta
     2581 tccactgatt ttctcccgag ttgcatctca agtggcggac aaaattattt gcgatgatgt
     2641 tttccagcag actgggcgat caaataacta atagaatgtc caagaagaat tattggaaag
     2701 ttttccagtt taaagatgtt ctgaaaaata tctacagtcc atataaacga gtatgttaaa
     2761 ctaaacttca taacatgaat tttgacctag ggaacctagc aacatcggtc gggattggag
     2821 gcggattggg tttccttgtc ggatatgctg taaaaaaaat tttcaagatt attcttgttt
     2881 tggccggact ctctattgcg actttgtcat atttgcaatt tcaaggcatt gttg
//
LOCUS       DATLQL010000600         1998 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_144060, whole genome shotgun sequence.
ACCESSION   DATLQL010000600 DATLQL010000000
VERSION     DATLQL010000600.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1998)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1998)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1998
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_144060"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..723
                     /locus_tag="VNB68_06095"
     CDS             <1..723
                     /locus_tag="VNB68_06095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase"
                     /protein_id="HVD36955.1"
                     /translation="LSLGNVRKAYSYGILLGRVLARLGDVIVIGESIPGGTTSCLGVL
                     SALGIDAKFKVSSSMPDNPHILKNKVVAKAMKKANISFGELEERPLEAISLFGDPMLP
                     SVAGLVVGVNEFGGKVILAGGTQMAGVIAVIKSLKQSLDKVCIATTTYVAEDHSSKLA
                     DLVGLVSTEVPVFAADLHLIRSCKSGLKAFARGYVKDGVGAGGVSFASMLKTRGKISG
                     STLLNAIELEYDRAIQQIRPNV"
     gene            937..1185
                     /locus_tag="VNB68_06100"
     CDS             937..1185
                     /locus_tag="VNB68_06100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36956.1"
                     /translation="MSKVQSKKRRLAENGEVRSTSKNKTTGRELTLIEEINARINTLI
                     DLLDANSLIDKKQYERTLSMRLHEISKATAFEEMDTDV"
     gene            complement(1496..1595)
                     /locus_tag="VNB68_06105"
     tRNA            complement(join(1496..1543,1558..1595))
                     /locus_tag="VNB68_06105"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1559..1561),aa:Ser,seq:gga)
BASE COUNT          634 a          373 c          427 g          564 t
ORIGIN      
        1 ctcagtctag gtaatgtaag aaaggcctat agctacggaa tactactcgg cagagttctc
       61 gcaagacttg gtgacgtcat tgtcataggt gaaagtatac ctggtggaac aacatcttgt
      121 ttaggagtat tgagtgcgct cggtatcgac gcaaaattca aggtaagtag tagcatgcca
      181 gataaccctc acatcctaaa gaataaggta gttgccaaag caatgaaaaa agctaatatc
      241 tcttttggag agttagaaga gcgtcccttg gaagcaatat cactgtttgg cgatcccatg
      301 ttaccatctg ttgctggcct agtagtagga gtaaatgaat ttggaggcaa agtaattctt
      361 gctggcggga ctcaaatggc tggggtaatt gccgtaataa agtcactgaa acaatcgttg
      421 gataaggtgt gtattgcgac tactacatat gtagcagaag atcattcttc caagcttgcc
      481 gatttagtgg gactcgtatc caccgaagtt ccagtttttg ctgcagattt gcatttaata
      541 cgatcatgca agtctgggct gaaggcattc gctcgggggt atgtcaagga cggcgtagga
      601 gcagggggtg tatcatttgc ttcgatgtta aaaacacggg ggaaaattag cggaagcact
      661 ttattaaatg cgatagaact agaatatgat cgtgctatcc agcaaatacg acccaatgta
      721 tagaacgtcg gcctagactg atatatatca aatgtctgcc taggcaaaaa tacaagactc
      781 ttttcaatat taggaattta ttactcgtta gcaagtcaaa tatctgtgtt aaatctgatg
      841 gctctaaata tgtcaagcac ttttaatatc acatgggatc tcgaattccg ataaaaagat
      901 ttgtataact gatagaaacc taaacaatat tggctaatga gtaaagtgca atccaaaaaa
      961 agacggcttg cagaaaatgg agaggttcga tcaacctcaa agaacaagac tacaggtaga
     1021 gaactgaccc ttattgaaga gataaatgcg cgtatcaaca cattaataga cctactcgac
     1081 gcgaatagcc tgatcgataa aaaacaatat gaacgaacat tatctatgcg cctacacgag
     1141 atttccaaag cgactgcatt tgaagaaatg gatacagatg tatgaaacta cagggtatag
     1201 tgcctcatcc aagacttatc ctatccttat cctttgattg accaatatcc agcaaaataa
     1261 aaagtctact ttttttagat tcccttaatt ccccgacgag tcagggattt tctggaagaa
     1321 taaaaagtgt aattccctag agtggaagta ctgtttcgca gatttaatca ttggagaatt
     1381 atgatttctt caaatttggc acgcccaatc aaaagaacaa aggatggtag ttttaggaaa
     1441 accgtctagc tgcatatatc caacctgatg ccggtattcc atctgtgagc tgaggcgccg
     1501 ggagagggat ttgaaccctc gcgaccctat cggatcacaa gctaacaagg tttgtttttc
     1561 caggcttgcg ccataccgtg ctaggcgacc ccggcttaag cacaatctat tactcgcgta
     1621 tattaatcaa tgaaaacgaa taattaaatc taatccctta acactaattc ggaaaggctt
     1681 ctgcaattgg atgatgtgga cgtggactca aatctagagc tgcgattttt tgtgttctac
     1741 actgggacaa aaagtatatc tttgctatag aaaatcaaat ttcgagtgag cggagatcat
     1801 ctggcttgat ctatcatagg gtccattata agtgcttatg tatatttata acaaaaagaa
     1861 ttatttctgt tcttgtctat gcagatcatg ctagcctaca agcctaaaaa gtagccagat
     1921 ttgtttattt ggtctaggca tctatttctc tgagcttaac aaggttatta gagtccgtaa
     1981 ttctgtagta atcagatt
//
LOCUS       DATLQL010000601         1006 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_857409, whole genome shotgun sequence.
ACCESSION   DATLQL010000601 DATLQL010000000
VERSION     DATLQL010000601.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1006)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1006)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1006
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_857409"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
BASE COUNT          296 a          204 c          182 g          324 t
ORIGIN      
        1 taatgtgcta ggtttgatgt gaaccatgag acctttacta ctagaaactt tggcctaatc
       61 acattcagtg ttcgaagtat gctgtctggt attgtggcag gtcatgcttt gtttcatttc
      121 ttacctctaa ttcacactca aaatttacta tagtgcgtgc ttgtctctat atctttcttg
      181 agactttttg atcataagaa aagctattct gttcactttt gctttttgtc tcagttcata
      241 catttatggc ccccactcaa taagtacatg tatgtgacaa cactgctagc atgattataa
      301 tcacaatttt tccactgagt tatcgtcccc cagattatca cggtctattc aaccaccatt
      361 ccatagaaga aacataagga aataattgaa tcgagtctaa gaagaagata agcccgaaaa
      421 taatccgatt acgaacaaag atcttgaatt gctgataaca aatgcagttc aatgccacat
      481 ttgtgaaatc ttgtgaaaat ttgggtcgga tcgtcgtgag atcttcatcg cttttgctca
      541 gtctggatca gcgaactcac ctcattccca tcctaatata gtgcggttta tacctaaaaa
      601 ctattgcttc acagtgaaaa ttgaagaggt tggctataaa aagaacttaa ggatattcaa
      661 agcatgacaa aagaaggatg gatcagtata gttatgggca ggatactcaa gggcttaggg
      721 ctccaagcag gggcaaagga atcaaagatt tgtcgcccca ttctgctcct tctggacaag
      781 taaacgtcca atcacatacg acacttctga atctaaagcc agtggtctct tttctctatc
      841 ttaatcagac tcgaagaaaa agaggggacg tttgatcatt accaaagacg tattattgca
      901 ttagtgcaat ttttgctctt ttgcttgctt gtccaaagca tttcttagca tcgccaaatg
      961 cctttcccgt tcttgtttta tagttttcca tatattttca aggtca
//
LOCUS       DATLQL010000602         1136 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1032707, whole genome shotgun sequence.
ACCESSION   DATLQL010000602 DATLQL010000000
VERSION     DATLQL010000602.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1136)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1136)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1136
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1032707"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(230..>1136)
                     /locus_tag="VNB68_06110"
     CDS             complement(230..>1136)
                     /locus_tag="VNB68_06110"
                     /EC_number="4.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_function: GO:0016849 - phosphorus-oxygen lyase activity
                     [Evidence IEA];
                     GO_function: GO:0032555 - purine ribonucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HVD36957.1"
                     /translation="PEIISLELDVSQEEVMRVIESETNEEERKRDAVEKLSDVPLLSK
                     LYLDSVVNIDRAIDHAQSTMWKALKVKSEFDISTEEADKILEPYAESKVSLVILNIDL
                     VESTKLSMILPVDKLATIIRTFAQEMSLLITSYGGYVLKYVGDAVLAFFIVGPPPASN
                     DQMYIPCMNAISCACSMIRVIRQGINPILQQSDYPELKVRIGIDVGENVVVQYGWDTF
                     RQDEKIVLKKPHLDILGYTISIASKITAIAQPDQIIIGQLVYNVLEKEQGRTFSKLSI
                     TPEVWGYVSANTGTIYNLYSSNTWG"
BASE COUNT          339 a          229 c          200 g          368 t
ORIGIN      
        1 gtactatgga ttatgtattg ccaatagagt tcaagaaatg cgaaaaaatg aatattacca
       61 tttgttaata caagttttag tcttcatgtg ctaggcttag actagcttca tcgtacgaat
      121 tatgaacctg cgtctataga taagtcatgt aattgaaaga tcttgataag tacaaaatta
      181 aaattggtaa cgcatatggc aaagtcgtaa ttttccatat gaatcctgtt caaccccacg
      241 tattactgga gtacagattg tatatcgtac cagtattagc gctaacatag ccccagactt
      301 ctggagtaat tgagagcttg ctgaaggtac gtccttgttc tttttccaat acattgtata
      361 ctagttgacc aattataatt tgatctggct gtgcaatcgc cgtaatttta gaagcaatac
      421 taatagtgta acctagaata tccaaatggg gctttttcaa tacgattttc tcatcttgcc
      481 tgaacgtatc ccaaccatat tgaactacta cattctctcc aacatcaatc ccaattctta
      541 ctttcagttc aggatagtcg gattgttgca gaattgggtt aattccttgt cgtatcactc
      601 tgatcatcga acatgcacag cttattgcat tcatacacgg tatgtacatt tggtcatttg
      661 acgccggagg tggacctact atgaaaaaag ctaaaactgc gtctccgaca tatttcagaa
      721 cgtaaccacc gtaggatgtt attaacaagg acatttcctg agcaaaggtt ctgataattg
      781 tcgcaagttt gtctacggga agtatcattg ataacttggt agattccaca agatcaatat
      841 ttagaatcac aagactaact ttagattcag cataaggctc taaaatttta tctgcttcct
      901 cagtagaaat atcaaattcc gacttgactt tcaaggcttt ccacattgta gattgtgcgt
      961 ggtctatagc gcggtcaata ttaaccaccg agtcaagata taatttgctt aataacggga
     1021 catcagatag cttttccaca gcgtccctct ttctttcttc ctcgttagtc tcagattcaa
     1081 ttacacgcat gacttcctct tggctaacgt ccaattctag agatattatc tcaggg
//
LOCUS       DATLQL010000603         1098 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_144839, whole genome shotgun sequence.
ACCESSION   DATLQL010000603 DATLQL010000000
VERSION     DATLQL010000603.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1098)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1098)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1098
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_144839"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..665)
                     /locus_tag="VNB68_06115"
     CDS             complement(<1..665)
                     /locus_tag="VNB68_06115"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase family protein"
                     /protein_id="HVD36958.1"
                     /translation="MTSTSGPDLLQRIGGTPVVELSKYSTNKIKFYAKLEWYNPFGSV
                     KDRPAYWMVKEAEKSGVLKKGKSIIIEPTSGNTGIALTGIATSMGYKVEIVIPEKVSE
                     ETKFILRKLGATLHETSDDLCPRVGAGTDQSIALAAAIAKPRPDIYFMPNQYENEANF
                     LAHYEGTGPEIWEQTNGKVTHFFTGCGTGGTITGTATFLKEKNNNIKIIAIEAQQNHI
                     LQG"
     gene            complement(666..911)
                     /locus_tag="VNB68_06120"
     CDS             complement(666..911)
                     /locus_tag="VNB68_06120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HVD36959.1"
                     /translation="MINNEESSAKVIDVRGLYCPEPVFRTKIEIERLTIGDKLKVIAD
                     DPESEEDISRWVKRTGHELIYINKNAKDLEFLIKKAK"
BASE COUNT          273 a          247 c          203 g          375 t
ORIGIN      
        1 aatccttgga gaatgtgatt ttgttgtgcc tcaatggcta tgatcttgat gttattgttc
       61 ttttccttta ggaacgtggc agtcccagtg atcgtgcctc cggtaccaca accagtaaag
      121 aagtgagtca cctttccatt cgtctgttcc caaatctctg gacctgtacc ttcatagtga
      181 gctaagaagt ttgcctcatt ctcatattga ttgggcatga aataaatgtc aggtctaggt
      241 tttgctatcg ccgctgcaag ggcaatactc tggtcagttc cggcccccac tctgggacag
      301 aggtcatcgg atgtttcgtg aagggtcgct cccaacttcc gcaaaataaa tttggtttct
      361 tcacttacct tttcaggaat aactatctcc actttgtaac ccattgaggt agcgataccg
      421 gttaaagcta ttccggtatt tccagaggtc ggctcgataa tgatactctt gcccttcttc
      481 agtacgcccg acttctccgc ttcctttacc atccaatatg caggacggtc ctttaccgaa
      541 ccaaagggat tataccattc taactttgca taaaacttaa ttttgttggt agagtatttt
      601 gataattcaa ctactggggt tccccctatt ctttgaagaa gatcaggtcc actcgtggac
      661 gtcattcact tggccttctt tattaggaat tctaaatctt tagcattctt gttaatgtaa
      721 atgagctcat gaccagtcct ttttacccat cttgatatat cctcctccga ttcagggtcg
      781 tctgctatta ccttcagttt atcacctatt gtaagtcttt caatctcaat cttggttcta
      841 aaaactggct ctgggcaata aagacccctg acgtcaataa cctttgctga tgattcttcg
      901 ttatttatca tttcgagata ccctgattta ttgtagctta gagcgattta tattaatcgt
      961 ttatggctta ccgtgactac aaaataccga gctagaaatg gcatcatttg aggattactg
     1021 taaaaaacgg gatgtttatt gatattttcc ttaactgatt catcagaacc cacgaagact
     1081 ttattaatat tttacgtt
//
LOCUS       DATLQL010000604         1055 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_144953, whole genome shotgun sequence.
ACCESSION   DATLQL010000604 DATLQL010000000
VERSION     DATLQL010000604.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1055)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1055)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1055
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_144953"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..201)
                     /locus_tag="VNB68_06125"
     CDS             complement(<1..201)
                     /locus_tag="VNB68_06125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HVD36960.1"
                     /translation="MIANKDNDKPLARLLVVDDDPDNAQSLKLGLLSHGFLVDAFTNP
                     EEALQNFKSNPECYRLVLSDNWM"
BASE COUNT          340 a          195 c          216 g          304 t
ORIGIN      
        1 catccagttg tcagacagca ccaaacgata gcactctgga ttggatttga agttttggag
       61 tgcctcttcc ggattagtaa atgcatctac caaaaatcca tgactgagta gaccgagttt
      121 gagagattga gcattgtcag ggtcatcgtc tacaacaagc aatctagcta gtggtttgtc
      181 gttatccttg tttgctatca tgttatctga gatacctcca ttctgcagct actctccctt
      241 gcagcctcta aaatatcgca gattatgccg attgtgtctc tacaatatct attgaggctc
      301 atgagttgtt gaaggaatta atcctgcgag aataaatacc tttttgaaga aaattataaa
      361 aatacattcc aatataggaa acttttcagc tacacgagac ctctgtgaag accacggatg
      421 ggcttactca agagatggta ctatatgttt cgaccctaat gaatgaccat catgatggcg
      481 atgagtggtg gagcgtagta acaccttaga aatgcatata ggttattgcc gaaaaaatat
      541 tcacttccta tttgagacaa tcaaggataa aatcagagat agtagacctt ttgcaaggtc
      601 gagtacctaa atctgtcttc gcaagacacg attttgctcc aagtgtggat tttagacaga
      661 aggtgttaac agcactgcac aatctcaaag aagagttaca aaattaacag cactgtagca
      721 ataataagga ttcaatacaa tcttaatatt taataacaat ctcatatcta ttattgtgga
      781 tgtacggcat ttaggaacct ttcagagaga ggtagccaga caatgtgatt ttgctttgat
      841 ggcgtataat gacttagaac aggcagtcaa ccgacttagg gaagtggaat attggaggat
      901 gatgatatgc acagaatttg gtattatatc cagaacttgc tgatagcatt aggaaatatt
      961 ccaaagttac tatggcccaa taacaaattt catgttagag gacagcaatt gagaagtagc
     1021 ctaaatgtac ctcaaaactc gtctctagga ccccg
//
LOCUS       DATLQL010000605         1645 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1033603, whole genome shotgun sequence.
ACCESSION   DATLQL010000605 DATLQL010000000
VERSION     DATLQL010000605.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1645)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1645)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1645
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1033603"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..454
                     /locus_tag="VNB68_06130"
     CDS             <1..454
                     /locus_tag="VNB68_06130"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HVD36961.1"
                     /translation="TIKKILVAVDGSKPSLDAAVYAIHLAEKHEAELTSLYVVSPDIR
                     YGYMEDALTPALPGPLKEIVMMAVEGGQKHVDEVKKRASKTNISINTDVIISNTSVVK
                     SIVEYAEEHKIDLIVIGTKGLSGIKKMLLGSTASGVVTYAHCPVMVVK"
     gene            766..1191
                     /locus_tag="VNB68_06135"
     CDS             766..1191
                     /locus_tag="VNB68_06135"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HVD36962.1"
                     /translation="MFSKILVPVDGSDISYRALNSALFLSEKLGAKITAIHVIEKVPT
                     VYIQSQKILDEILETHKNESQKILDECSSIATKKGIAISTTLLEGNPASTILEFSQTE
                     KYEVIIIGSRGMGHFKELILGSVSSKILHHSLCPVLLIR"
BASE COUNT          531 a          319 c          331 g          464 t
ORIGIN      
        1 aaccatcaag aagatcttag ttgcagtgga tggctctaaa ccttctttgg atgccgcagt
       61 atatgctatt catcttgccg aaaaacatga ggctgaattg acctcattat atgttgtgtc
      121 tcctgatatt agatatgggt atatggaaga tgctctaaca cccgcactgc ctggccctct
      181 taaagaaatt gtcatgatgg cggtggaagg agggcagaaa cacgtagacg aagtgaaaaa
      241 aagggcatcc aaaactaaca ttagcattaa cactgacgtt atcatcagta atacgtctgt
      301 tgtgaaatcg atcgtggaat atgctgaaga acataaaata gatttaattg ttattgggac
      361 gaagggcctg tcaggaatca agaaaatgtt gctaggtagc acagcttctg gtgtagtaac
      421 atatgctcat tgtcccgtca tggtggtaaa ataactgtat acagctaaga attcaacagt
      481 tcaggttcat gaaggttaga acgggaaata tatttttagc ttccattctt ttcgttcctt
      541 gtctggatct tccacataag atctgatagt caaatataat atactatgtg agatatttac
      601 taaagaaatt ggttttcgtt tcctggatat ccacaaacca taaactacgt tgtaaggaca
      661 ctggggtgca tcggtagcaa aatgagcctc ttatagtgat cataaaatgg ctctcgggca
      721 cactacatca tattaaatac cagatgttgt aaccatagta tttagttgtt ctcaaaaatt
      781 ttagtcccag ttgacggctc ggatatttca tacagggcat taaattctgc tctgttcctt
      841 tcagaaaagc tgggagcaaa gatcacagca atccatgtca tagagaaggt gccaactgtt
      901 tacatacaat cacagaaaat cttagatgaa atattggaga cccataagaa tgaaagtcaa
      961 aagatcctcg atgaatgttc atcgattgct accaaaaaag gaatagccat aagcacgact
     1021 cttctcgaag gcaatcctgc ttcgacaatt cttgaattca gtcaaacgga aaaatacgaa
     1081 gtcataatca taggaagtcg aggaatgggg cacttcaagg aattgatatt gggaagtgta
     1141 tcaagcaaga ttcttcatca ttcattatgt ccagttttat taataagata gttcttattg
     1201 tcttagatga actatggagt gtaatatcga acatcgcatc ctacagtgcc accatcgtgt
     1261 aataaacttg ccattgctgt caaattttgg atgcggtgat tgccaaaatc aactacgtac
     1321 gttaccggaa gaatccactg aaatccctgc cggtagagag aatcgtccat cacacaccat
     1381 accacacatt tgcagatgtg cctcgtgata tgatcctagt ttgcccacag taataactat
     1441 aaatggtcat tcgtgccaga caaataatta acgtgggttt cgttcggtgg gatgcactta
     1501 tggtaggatc acccaagcct atcaagccca agatgaaata acttacgcgg tcgaaaaagt
     1561 aaggccataa cagcctatac taatcctcat cctccgataa agatcgtctt tgtaacattc
     1621 acgaccaatt ctatcagagt agtat
//
LOCUS       DATLQL010000606         1184 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2278886, whole genome shotgun sequence.
ACCESSION   DATLQL010000606 DATLQL010000000
VERSION     DATLQL010000606.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1184)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1184)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1184
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2278886"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..297
                     /locus_tag="VNB68_06140"
     CDS             <1..297
                     /locus_tag="VNB68_06140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair and recombination protein RadA"
                     /protein_id="HVD36963.1"
                     /translation="SVLSERQQRINRFLHILLRIAETCSVAVVITNQIQSSPDAFFGD
                     PYRPTGGNVMAHTTTYRIYLKRAGKNRIARMADSPCHAEREILFTLNEQGVGDP"
     gene            421..735
                     /locus_tag="VNB68_06145"
     CDS             421..735
                     /locus_tag="VNB68_06145"
                     /inference="COORDINATES: protein motif:HMM:NF013336.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36964.1"
                     /translation="MPRSHGPQRKSRHVLKKSVASRGVSFLLTEYKIGDKVVISVDPR
                     EHNTIPHKRYQGRVGIVQRIGRRTMNVGITMGNKQKILQTKLNHIRPLISSEAKEVNE
                     ID"
     gene            728..1054
                     /locus_tag="VNB68_06150"
     CDS             728..1054
                     /locus_tag="VNB68_06150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase Rpb4"
                     /protein_id="HVD36965.1"
                     /translation="MTEIIKREMVSLSEVKETLEKRKPDEMDQIQRWTFDYVTKFSKI
                     SPDAAKILVNDLIRECEFTEEEAVELVNIMPKSLEELRTFTFGWKKLILTSTLEKALA
                     KLTSTN"
BASE COUNT          423 a          209 c          259 g          293 t
ORIGIN      
        1 tctgtattat cagagcgaca gcaaaggatt aaccggtttc tacatatatt gttaaggatc
       61 gcggagactt gttcagtagc agttgttatc acaaaccaaa tccaatcttc gccagacgca
      121 ttcttcggtg atccttatag acctactggt ggcaatgtta tggcgcatac gaccacatat
      181 cgaatatact taaagagggc aggaaaaaat agaatagcga gaatggcgga cagtccatgt
      241 catgctgagc gagaaatact ctttacatta aatgaacaag gtgttggcga tccttgaagt
      301 gctgataggc cagctcagtt cggttggttc gacgctaatc attagttcca aaataaaatt
      361 cacgatgaca tttggcattg ccagataata ttaaattaag gctattatgt caatgaagga
      421 atgccccgat cacatggacc gcaaagaaaa tcaagacatg ttctcaagaa gagtgtagca
      481 tccagaggtg tttcgttcct actgactgaa tacaaaattg gggataaagt agtgattagt
      541 gttgatcctc gagaacataa caccattcca cataaaagat atcagggtcg ggtcggaata
      601 gttcaacgga ttggaagaag aaccatgaat gtcggaatta cgatggggaa taaacagaag
      661 atattacaaa cgaaacttaa ccatataaga ccgctgattt caagcgaagc aaaggaagta
      721 aacgaaattg actgaaatca taaagcgaga aatggtatca ctctcagaag tcaaagaaac
      781 tctagaaaag aggaaacctg acgaaatgga tcagattcag cgctggactt ttgactatgt
      841 gaccaagttt tcaaaaatta gtccagacgc ggccaaaata ttggtaaatg atttgatcag
      901 agaatgtgaa tttactgaag aagaagccgt ggagctggtt aacataatgc caaagtcact
      961 ggaagaactt agaacgttta cattcggatg gaagaagttg attctaacgt caacattaga
     1021 gaaagccttg gcaaaactta catccacaaa ttgatgaaag ttaaatacga agaccataat
     1081 aatgcaatcg taattggaat cacttcctcg cgatagagaa aacattaggt catacgatgg
     1141 aattccccat gttatcgctc acagaaagta tgaggaatat gctt
//
LOCUS       DATLQL010000607         1516 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2102302, whole genome shotgun sequence.
ACCESSION   DATLQL010000607 DATLQL010000000
VERSION     DATLQL010000607.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1516)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1516)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1516
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2102302"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            315..1067
                     /locus_tag="VNB68_06155"
     CDS             315..1067
                     /locus_tag="VNB68_06155"
                     /inference="COORDINATES: protein motif:HMM:NF004818.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HVD36966.1"
                     /translation="MTNQKVAIITGGSSGIGRATAVALAKEGVNVAIAARRTKEGEET
                     VQLVKEAGSDGVFVKTDVANEDDVRALVEKTVKTYDRLDYAFNNAGIGETMTPLVEQT
                     SNVFDQIMNVNVKGVWLSMKYEIPQMIRTGGGAIVNMSSGAGVMGFPQMPIYIASKHA
                     VLGLTKSAALEYAKSGIRINAVAPGGVETDMLKQAAEDNKQFVETLRSMHPIGRIADP
                     EEIANAVVWLLSDKASFVLGHTLLVDGGFISR"
     gene            complement(1125..>1516)
                     /locus_tag="VNB68_06160"
     CDS             complement(1125..>1516)
                     /locus_tag="VNB68_06160"
                     /inference="COORDINATES: protein motif:HMM:NF019013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0030638 - polyketide metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ester cyclase"
                     /protein_id="HVD36967.1"
                     /translation="AYNNKNETIFDDIISPDYTDHGQSAYMGSPGRGVAGAKNDLKNS
                     FDKLDDFKYVAEALIASPWNPDLVGAYWKGSLTPKLTSDTQQTSKIIDVRGVSIYRIQ
                     NGKMVETWHVVDGVLPKIFGQKTITKK"
BASE COUNT          488 a          274 c          313 g          441 t
ORIGIN      
        1 acatgacatt aaatgataag attgatgaat cggcattatt caatgtcgat acctattcga
       61 atgaaaacaa aacgataatt cattttgtac ctgatattaa cacactcttt gacatttcta
      121 ggaacaatca aaactgacaa aagtgatcca tctatgaaat ttgttctata cttaagataa
      181 gaatataaaa tctacaatga caaataccgt tcctaaatct aggtaaagct cactattatc
      241 tgctatctat attatttaga acattagtat cgacagtaat aaataatgcg agaacaaata
      301 ttcgatatac aaaaatgaca aatcaaaaag ttgcgatcat aaccggtggt agttctggca
      361 ttggaagggc aactgcagtt gctcttgcga aagaaggagt taatgttgcg atagccgctc
      421 gccgtaccaa agaaggagag gaaaccgtgc agctagtcaa agaagctgga agtgacggcg
      481 tctttgtgaa gaccgatgtg gcaaacgaag atgatgtcag agcactcgta gagaagaccg
      541 tcaagacgta cgataggctt gattatgcat ttaataatgc tggtatagga gaaacgatga
      601 caccattagt agaacagaca tcaaatgttt ttgatcagat catgaacgta aatgtcaaag
      661 gcgtttggtt gtctatgaaa tatgagattc cgcagatgat cagaacagga ggaggagcaa
      721 tagtaaacat gtcttccgga gccggcgtga tgggatttcc acagatgcca atttatatcg
      781 caagcaaaca tgctgtgctt gggctgacca aatcagctgc gctagaatat gccaaatctg
      841 gaatcagaat aaacgctgtt gctccaggtg gagttgaaac tgatatgctt aaacaagctg
      901 ctgaagacaa caagcagttt gtagaaacgc ttagatcaat gcatccaata ggacgcattg
      961 cagatccaga agagattgca aatgcagtgg tttggttatt atctgacaaa gcatcttttg
     1021 tattaggtca cacattgtta gttgatggag gattcattag tcgatgagtc tcttctgtga
     1081 gatcgattag ataagattat gtaagatgag attttaaagc ctcttcattt tttcgttatc
     1141 gttttttgcc caaaaatttt cggtagcaca ccatcaacta catgccaggt ttcaaccatt
     1201 tttccattct gaatgcggta tatacttacg cctctgacgt caattatttt actagtttgt
     1261 tgagtgtcag aagtcaattt tggtgtcaat gatcctttcc aatatgcgcc tacaagatca
     1321 ggattccatg gtgaggcaat caatgcctct gccacatatt taaagtcgtc caatttatcg
     1381 aaagaattct taagatcatt ctttgctcca gcaacacctc ttccaggaga gcccatatac
     1441 gcagattgac catggtcggt gtaatctgga gatattatgt catcgaatat cgtttcattc
     1501 ttgttattgt acgctt
//
LOCUS       DATLQL010000608         1048 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_679419, whole genome shotgun sequence.
ACCESSION   DATLQL010000608 DATLQL010000000
VERSION     DATLQL010000608.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1048)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1048)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1048
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_679419"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1048
                     /locus_tag="VNB68_06165"
     CDS             <1..>1048
                     /locus_tag="VNB68_06165"
                     /inference="COORDINATES: protein motif:HMM:NF013570.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004813 - alanine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006419 - alanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alanine--tRNA ligase-related protein"
                     /protein_id="HVD36968.1"
                     /translation="YYENESIREFDARVLKVLKDKYLILDKTAFYPRGGGQEPDFGSI
                     EDIRITDVIKQNNIVLHKMQPSSKDHFVENKVVHGIIDNTRRRSITKNHSATHILNSA
                     ARNSLGSWVWQNSAFKDEHYARLDITHHSALTKEQIKQIEKTANEVVQKNLPIIINIQ
                     ERSDAESRYTFRIYQGGAVPSNNVRIVNIDGWDVEACGGTHVNKTGEIGLIKILKTER
                     IQDGVVRLEFVSGNNALQYIQSQDSQLHHIAQSLGSSREKVGESFGKMIAENELMKKK
                     LRSLVNKFSDNMASTVAQKATRTGVGIKIYGIYDDQVGDDYYIALGEKSTYVDPFLVY
                     VALVQDQDRIRVIVF"
BASE COUNT          375 a          168 c          226 g          279 t
ORIGIN      
        1 gtattatgaa aacgagtcaa taagggaatt tgatgcaagg gttctcaagg tgctcaaaga
       61 caaatacttg attttggaca agactgcatt ttatcccaga ggtggcggac aggaaccaga
      121 ttttggatct atcgaggaca tcagaattac agacgtaata aaacaaaata atatagttct
      181 gcacaagatg caaccctcat ccaaagatca ttttgtagag aacaaagtag ttcatgggat
      241 tattgacaat accaggagac gatctataac aaagaaccat agtgcaacgc atatattaaa
      301 ttctgctgca aggaacagtc tcggttcatg ggtgtggcag aattccgctt ttaaagacga
      361 acattatgca agattggata ttactcatca ttctgctctg acaaaagaac aaatcaagca
      421 gatagaaaaa actgctaatg aagtagtcca gaaaaattta ccgatcatta tcaatattca
      481 agaaagatcc gatgccgagt cgcgatatac cttcagaata tatcaaggag gtgcagttcc
      541 atcaaacaat gtaagaatag taaacataga cggatgggat gtcgaagcat gtggtggaac
      601 ccatgttaat aagacaggtg aaatagggtt gataaaaatt cttaagacag agagaattca
      661 agatggtgta gtaagacttg aatttgtttc cggaaataat gccctgcagt acatccaatc
      721 tcaggattct cagttacatc atatcgccca atcattgggc tcaagtagag agaaagtagg
      781 cgagtcattt ggtaagatga tagcggaaaa tgaattaatg aagaaaaaat taagatcgct
      841 tgtcaacaaa ttttctgaca acatggcttc aaccgttgcc cagaaagcga ccaggactgg
      901 agttggaata aaaatttatg gcatttatga tgatcaggta ggtgatgatt attatattgc
      961 tttaggagaa aaaagtactt acgttgatcc ttttttagtg tatgtagccc ttgtgcaaga
     1021 tcaagatagg atcagagtca tcgttttt
//
LOCUS       DATLQL010000609         1079 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_679602, whole genome shotgun sequence.
ACCESSION   DATLQL010000609 DATLQL010000000
VERSION     DATLQL010000609.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1079)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1079)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1079
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_679602"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            72..632
                     /locus_tag="VNB68_06170"
     CDS             72..632
                     /locus_tag="VNB68_06170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36969.1"
                     /translation="MIITILGIVLVINNFGLSVGNFSSVKLPDLKLPSVNVGEQIFNE
                     EALRDARSLVVSIKDVHVEPVNKTRAKVNVIFDIFNPNKATVMLEVISYNLYTNSGRM
                     VSGDIGEKPTGFVGSQANIFPIVGNGSIMLKDSKVIEREGPSETNLDGTVGNTQHYII
                     NGTFSYKQTSSFQSSGGENNYSLTFP"
BASE COUNT          322 a          190 c          231 g          336 t
ORIGIN      
        1 ttattatacc ttcacagtaa ctctttgtta agtaattgaa tagaagggtt gtgtatattg
       61 cctctggagt tatgataata acgatcttgg gaatagtctt agttatcaat aactttggcc
      121 tcagcgttgg aaatttctca agtgtaaagt tgccggattt aaaattgcca tcagtcaacg
      181 tgggtgaaca gatttttaat gaagaggcat tgcgagatgc aagatcctta gttgtttcaa
      241 ttaaggatgt tcacgtggaa cctgtaaata agactcgggc aaaagtgaat gtcatctttg
      301 acatttttaa tccaaacaaa gcaactgtga tgttagaagt tatttcttac aatttatata
      361 ccaactctgg aagaatggtt tcaggagaca ttggcgaaaa acctacaggg tttgtgggtt
      421 cccaagccaa cattttcccc attgtcggga atggcagcat aatgcttaag gatagcaaag
      481 tgatcgaaag agaaggtcca agtgaaacta acttggatgg tactgtaggg aacacccaac
      541 attatattat aaacgggaca ttttcttaca agcaaacttc tagttttcag tcatcaggcg
      601 gagagaataa ttattcgctt accttccctt gaggagtgtc tatccaacca ttaggtctat
      661 tgtccattga agtttctgtc tacgtgtcct tttttctgct ctcagacaag agtctcaaag
      721 ggaaacagaa atattctagt ccagcaaaga ttgtgcatgg ccgatctgtt gataacttat
      781 gcaataacag cattaatgtt cgttatctta ggaggggtag tatttggtgc aagaagtaga
      841 agatataacc aacagaaaaa tttagggctg gcgcccaatt cctgaattat gttgggaaca
      901 gaggtaattt agaagtttga ttcagaacaa tggataagca ccacaatcat tctcttagtt
      961 tctggtaatc ttgctgcctc tacttcggta atactcctgt tgctatttct tgcccaaacc
     1021 aaagaggtct tccagtagtt gggggctgtt gtccttttgt tgcgggaaac acctatcat
//
LOCUS       DATLQL010000610         1373 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_859474, whole genome shotgun sequence.
ACCESSION   DATLQL010000610 DATLQL010000000
VERSION     DATLQL010000610.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1373)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1373)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1373
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_859474"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            158..>1373
                     /locus_tag="VNB68_06175"
     CDS             158..>1373
                     /locus_tag="VNB68_06175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HVD36970.1"
                     /translation="MTGNPALKVLEAYTRDVGRGVARIDYDTMDSLSASTGDVIEIKG
                     GKRRTVAKCLPLYPSDEGKGIIRIDGLSRNNAGVAIGDTVEITKVKALPAEKITVAPL
                     EAIPPVDERYLADALESMPLIKGDNVMVPYFGGRLTFEVIVVSPASTVLVTQKTVFSI
                     GVKSETVRGLTHVAYEDIGGLKGEIQKVREMIELPLRHPEIFEKLGIEAPKGILLHGP
                     PGTGKTLLAKAVASETNAHFISISGPEIMSKFYGESEARIREIFKESREKAPSIIFID
                     EIDSIAPKREEVTGEVERRVVSQLLSLMDGLESRGKVIVIAATNIPNAIDPALRRPGR
                     FDREIEIKVPDKRGRLEILQIHSHNMPLESDVNQEKIAAVTHGFVGADMEYLCKEAAM
                     RCLRRLLPELSLE"
BASE COUNT          456 a          209 c          323 g          385 t
ORIGIN      
        1 atgggcatct ggatgggtcc tttttgagtg tcaggtcaag cactatataa cgaacatgag
       61 aaatattgca aacccattaa tattttgact attagatagg taatagatgg gttatactaa
      121 agcgtataaa gagttaatga ataggaattt ttaaattatg actggtaatc ctgctcttaa
      181 agttctcgaa gcttatacta gagatgtcgg ccgtggagta gctcgtattg actatgatac
      241 tatggattca ttaagtgcat ctactgggga tgttatagag attaaaggag gcaaacgtag
      301 aactgttgca aagtgtttac ctctttatcc ttcagacgag ggaaaaggta ttattagaat
      361 tgatggcctt tcaaggaata acgctggtgt agccattgga gacactgtcg aaataacaaa
      421 agtgaaggca ttaccagctg agaagataac agttgctcca ttggaagcga taccccctgt
      481 tgatgaaaga tatctagctg atgccttgga aagcatgccc ctcataaaag gggacaacgt
      541 catggtccct tattttggtg gaaggcttac attcgaagtt attgtcgtgt ctcctgctag
      601 tacagtgcta gttactcaaa agacagtgtt tagtattgga gtaaagagtg aaacagtaag
      661 aggactgaca catgttgcat acgaagacat tggtggacta aaaggagaga ttcaaaaagt
      721 tagggagatg attgaacttc cattaagaca tcctgaaatt tttgaaaagc ttggaattga
      781 agcaccaaaa ggtattcttc ttcatgggcc tcctggaact ggtaagacat tgttagcaaa
      841 ggcagtagct agtgaaacca atgctcattt tattagtatt tctggtcctg aaataatgag
      901 taaattctat ggggaatctg aggcacgtat aagagagata tttaaagagt cccgagagaa
      961 agcaccttcg attatattca tagatgaaat tgattccatt gctccaaaga gggaagaagt
     1021 aactggcgaa gttgaaagaa gagtagtttc acagttatta tcactgatgg atggtctaga
     1081 atcaagaggt aaagttatcg taattgcagc cactaatata ccaaatgcaa tagaccctgc
     1141 attaagacga ccaggtagat tcgatagaga aattgaaatc aaagttcctg ataagcgagg
     1201 ccgattggag atattgcaaa ttcattcgca taatatgcct ttagaatcag atgtcaatca
     1261 ggaaaaaatt gcagcggtaa ctcatggatt tgtaggtgca gatatggaat atctgtgtaa
     1321 agaagctgct atgaggtgct taagaagact gttaccggaa cttagtttag aag
//
LOCUS       DATLQL010000611         1043 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_859614, whole genome shotgun sequence.
ACCESSION   DATLQL010000611 DATLQL010000000
VERSION     DATLQL010000611.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1043)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1043)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1043
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_859614"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            332..721
                     /locus_tag="VNB68_06180"
     CDS             332..721
                     /locus_tag="VNB68_06180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36971.1"
                     /translation="MKLHKKTTSKRLFKEPIDCRLPDWFYEGKLANSQAIALLFYFID
                     KPLTTTRLTEVINKEWRKIDLRNISKHLTSKGKSLCGYTICDNDTQTYTLSAYGKKWA
                     EEELISTAKKSIKKKSEAAEQEMLDAE"
BASE COUNT          353 a          196 c          217 g          277 t
ORIGIN      
        1 ttgattcgca gaagaatgtg caaatgacca atttctcgga gcatatgaat tatacttcaa
       61 cgttctgtca aatcggcgtc ggatgctgca ggcaatgttt cttcctgtca aattcttcga
      121 atggagagtg tttaattggc aagtaaacga tgcgccgctt aaactaccag aatttgtcag
      181 aaatcacaaa aagcataatg acagcttcat gcgtgcttac gtatcgaatc gaagcataca
      241 acgatagttt agaaaagcac cttctgcaga aggtgctttc tttcgcaaaa aaaagaatga
      301 tgaaaaaatt tcaacagagg ttgaagaact aatgaagcta cacaagaaga ccacctcaaa
      361 acgtctgttc aaagagccta ttgattgcag gctcccggat tggttttacg agggaaagct
      421 tgctaacagc caagctatcg cactgttatt ttacttcata gacaaacctc taaccactac
      481 tagattgact gaagtaatca acaaggaatg gagaaaaata gatttgcgaa acatctcaaa
      541 gcacctcaca tcaaaaggaa agtccctgtg tggttatact atctgcgata atgacactca
      601 gacatacaca ttaagtgcct atggcaaaaa gtgggcagaa gaagaactga tatcgaccgc
      661 aaaaaaatca ataaagaaaa aaagcgaagc tgctgaacaa gaaatgctgg acgcagaata
      721 gctcgctgcg ttatgtttca agaattagag atgaaatatg tgagtccttg catctcaatt
      781 ttccgtgtcc tcacttacct aaattgcaca gggacatgtc tgctctcgtc tattattcac
      841 agtaaagata aatcgccttc tctcgatggg gtagttttta agtggtacag aattctaaaa
      901 tggagaggta gatttaggct tgacgggggc gttgtcaata tagtttcagt atttaaaata
      961 aaaaaagata gttgatatcc ctatgcatgg gaggccaaat accgcgtata gatgtctttg
     1021 cccctgtgtt gaatttttag aag
//
LOCUS       DATLQL010000612         1962 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_680019, whole genome shotgun sequence.
ACCESSION   DATLQL010000612 DATLQL010000000
VERSION     DATLQL010000612.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1962)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1962)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1962
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_680019"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(445..1248)
                     /locus_tag="VNB68_06185"
     CDS             complement(445..1248)
                     /locus_tag="VNB68_06185"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HVD36972.1"
                     /translation="MTRVIDCHVHLNRYEGTKYVPLEERIKLLVHIMEAGNVDHSIIL
                     SSYKVNEDRPSTEQLIEATRKYDDILSIVAGFSIDSHNDDDFQNCRKWFKEGLIRGMK
                     LYCGYEHYYPYDKRYQRVYDLCVEFGMPVMIHTGDTFSSKGKLRFSHPLNIDEVAVDN
                     PELKIVICHLGNPWIRDCEEVIYKNKNVYADISGLVLGEFSDYFEDFMVDKVTEFLNY
                     VGEPLYLLYGSDWPISSMESYLNLAAKLKLTQHSRELLMFRNAQALFKI"
     gene            complement(1261..1914)
                     /locus_tag="VNB68_06190"
     CDS             complement(1261..1914)
                     /locus_tag="VNB68_06190"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HVD36973.1"
                     /translation="MATHDNNNSIIIRNVTSKDIPHIVELQKQSFPIMAKDGVIWDEH
                     HLESHIKIFPEGQFCAELAGKIIASSSSLVTSLTPDYREHTWKQATAYGMFTNHTLKG
                     DSLYGADISTHPDSRGLGIATMLYDARKDLAVKLNLRRMIAGGRLFNYSEYAEKMSAQ
                     EYAEKVVKGELKDLVLSFQLNNGFKFIKILPNYMKDSRSLNYASFIEWINPKYVPQK"
BASE COUNT          560 a          394 c          363 g          645 t
ORIGIN      
        1 aagtgatgaa aggggaatta aaagatcctg tcttgtcatt tgaattagat aatgggttta
       61 gatttgtcaa aatactccca aattacttgg atgatgttcg ttctctgaat tatgctagtt
      121 ttatagaatg gttaaatcct agacaccagc aaaatcgcta accagggatt atcgagtctt
      181 ctgcggttta cttatatctc aaagattaga gaggcttttt acttttgaac actttgtaaa
      241 ggtttttcct gtatttctta ataaggtaaa gtcaatagga caaagagttg aggagactat
      301 aataatatct ggctacctaa gttcataatt gcctcaagct gcatgtgtgt gagtctcttc
      361 tgaataaaca acaccatcat tttatctcgg atttcaattt tgatctccag gttaccatcg
      421 gatggccagt aatgaaaaaa tctttcaaat cttgaaaagt gcttgcgcat ttctgaacat
      481 taaaagttca cgcgagtgtt gagtgagctt gagtttggca gcaagattaa gatatgactc
      541 catgctggat ataggccaat cactcccata caaaagatat agcggctcac caacatagtt
      601 caaaaattca gttactttgt caaccataaa atcttcaaaa taatcagaaa actcacctag
      661 caccaaaccc gagatgtctg catagacatt cttgttcttg taaatcacct cttcgcaatc
      721 ccgaatccag gggtttccta aatggcatat tactatcttc agctctggat tatctactgc
      781 tacttcgtca atgttcagcg ggtgagagaa gcgaagcttc cctttgcttg aaaatgtgtc
      841 tcctgtgtgt atcatgaccg gcataccaaa ttctacgcac agatcataga ctcgctggta
      901 tcttttgtca tatgggtagt aatgctcata gccgcagtaa agtttcatac ctcttatcag
      961 gccttcttta aaccactttc tacaattttg aaagtcgtca tcattgtggc tgtcaattga
     1021 aaaacctgcc acaatagaga ggatgtcgtc gtatttcctt gtcgcttcta tcagctgctc
     1081 ggtggatggc ctatcttcat ttaccttata agacgaaagg atgatcgaat ggtcaacgtt
     1141 gccggcttcc attatgtgaa ccaacagttt tattcgctct tctagtggca catatttagt
     1201 tccctcatag cgattgagat gcacatggca gtctattact ctcgtcattt gagcatcaac
     1261 tcacttttga ggcacatatt tcgggtttat ccattctatg aaagaagcat aattcaagga
     1321 acgactgtct ttcatatagt ttggcaggat tttgataaac ttgaagccat tatttaattg
     1381 aaatgataag acaagatcct ttaattctcc cttgacaacc ttttcagcat attcttgagc
     1441 tgacatcttt tctgcatatt cactgtagtt gaataatctt ccgcctgcta tcattcttct
     1501 tagattcaat ttaacagcca aatccttcct ggcatcatac agcatagtcg caatacctag
     1561 ccctctggag tcagggtgtg ttgatatatc tgcaccgtaa aggctatcac ctttgagggt
     1621 atggtttgta aacatcccat aagcagtagc ttgtttccaa gtatgttctc ggtaatctgg
     1681 tgtgagtgaa gttacaaggc tgcttgaaga ggctattatt tttccggcta actccgcgca
     1741 aaactgcccc tctggaaata ttttgatatg actttcaaga tgatgttcat cccaaattac
     1801 tccatcttta gccatgatgg gaaaagattg tttttgcaat tctacaatat gaggaatatc
     1861 ctttgaagtg acatttctaa taatgatgct attattatta tcatgagtcg ccaattaaat
     1921 cggctccagc atgcagtatt cttatcaagg attagtgtgt at
//
LOCUS       DATLQL010000613         1083 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_505108, whole genome shotgun sequence.
ACCESSION   DATLQL010000613 DATLQL010000000
VERSION     DATLQL010000613.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1083)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1083)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1083
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_505108"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(247..780)
                     /locus_tag="VNB68_06195"
     CDS             complement(247..780)
                     /locus_tag="VNB68_06195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36974.1"
                     /translation="MQKARKTRLRTFRVEEELDSLLQKDAKSKGISVNSLLSIILTKY
                     AEWDRYIEKFSVITMKKESFKTMLSAIDDGKVTDLSQELGDKVPSQFILFWFKKNTLE
                     NYLKYISLLCKHGGFGQFEIEQEGREYTITLIHELGVKWSNFLANWMNSGMKSTIGIV
                     PRIDVMQNSVIVKFTAR"
     gene            861..>1083
                     /locus_tag="VNB68_06200"
     CDS             861..>1083
                     /locus_tag="VNB68_06200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36975.1"
                     /translation="MNIELKMEDKKTRILMVVSSPTISTTTGWPVGFWAAELTHAYKL
                     FAEKGYDVTIASPKGGKVEVDSLSDPRDSS"
BASE COUNT          318 a          202 c          211 g          352 t
ORIGIN      
        1 gagtttgcct tggaagaatt atcaagacag tgttaaactt ctagaaggaa gctcccgtta
       61 gactacatac ttttttacct atcttttttg taagaatgcg ggcccatcgg gatatagata
      121 aaaatattca tttgaatccg agggcaagat ctgtaatatg ctgcaagatc aatatgtttt
      181 gatgtaattc gacagaggat atatctcctt tctcaagggc agttctacat gcaaataacg
      241 aatgcgctat cgtgcagtaa atttgacaat tacactattt tgcattacat caattctagg
      301 gactattccg atagtgcttt tcatccccga gttcatccag ttagctaaga aattagacca
      361 cttcacaccg agttcatgta tgagagttat tgtgtattct ctgccttcct gttcgatttc
      421 aaattgacca aaaccgccat gcttgcaaag aagagagata tatttcagat agttttcaag
      481 tgtgtttttc ttgaaccaga acaatatgaa ctggcttggc accttatcac ctagctcctg
      541 agaaaggtca gttaccttac catcatcaat cgctgaaagc attgttttga agctttcttt
      601 cttcattgtt attacactga atttttcaat gtatctatcc cattctgcat atttcgtaag
      661 aataattgat aaaagcgagt ttacgctaat gcctttggat tttgcatcct tttgcagtaa
      721 agaatcgagt tcttcttcca ctctaaatgt tcgtaagcgt gtttttctgg ctttttgcat
      781 gagcagatca attgtaatac aatgtattac aatttaaaca attgttagct atgtggacgt
      841 tgaggttatt actgatttta ttgaacatcg aattaaagat ggaagacaaa aaaactagaa
      901 tattgatggt ggtgtcaagt cccacaattt ccactaccac aggctggcca gtcggcttct
      961 gggcagctga attgacgcat gcatacaaat tgttcgcaga aaaagggtat gatgtcacaa
     1021 ttgccagtcc taaaggaggg aaggtagagg ttgatagcct cagcgatcct agggattcta
     1081 gcg
//
LOCUS       DATLQL010000614         1547 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1922634, whole genome shotgun sequence.
ACCESSION   DATLQL010000614 DATLQL010000000
VERSION     DATLQL010000614.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1547)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1547)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1547
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1922634"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            457..>1547
                     /locus_tag="VNB68_06205"
     CDS             457..>1547
                     /locus_tag="VNB68_06205"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF016724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HVD36976.1"
                     /translation="MKGCIVLPTGSGKTIIGIKAIERVNSATLIVVPTLDLMGQWTEI
                     LSKHFANAKIGNMGGGTDDIQAITVATYDSAYLRAASIGNKFSLIVFDEVHHLAAPGY
                     RSIAEQMAAPYRLGLTATIEREDNLHKDFPKLVGGVVFQANPSQLAKNKHLAPYEIER
                     RQVKMTSQEKQEYDRNYGTYQVYLNKSGIRMNHTGAFQRLIMMSAKSKAARQALLARN
                     RALDLALNSKSKMEELRKILIENRGLKTIIFTQHNSLVHEISNRFFIPLITHKTSKEE
                     RQYTLMGFKEGRYLAIVTSKVLDEGVDVPEAELGIIVSGTGSGREFIQRLGRLLRPKR
                     DIAKKARLIELISSDTHETITSARRKKALT"
BASE COUNT          532 a          272 c          336 g          407 t
ORIGIN      
        1 gccaaaatat ttcgctcaca atccggcaga tcacaaagtt cgttgaaggt acagcttgct
       61 tgccaattta gattaatgcc tgatcggttc tctaattctg acagcacgac cggtgaattg
      121 aaatgccaca catagttctc acgggctagg aaaaggatta tttaataatt ttgcctcaat
      181 catacaaaca tgttaaaaac gtcgcttagt tatcatggtg gaactgtgat aattaaaggg
      241 ctagctcata ttccctttgc tacggttgat ccaagaacga acttgttaag ggcgccagct
      301 ctgcattatt caaatattat atgttattta gaggaaagca gtatagtcta gaatgattct
      361 gttatggacc tcagtccttc tccacttttt ggtccgggct atgtttcatt aagagagtat
      421 cagaagaagg cttaggaaaa atgggtcgaa gcaggaatga aaggttgtat cgttctccca
      481 actggatctg gcaagacaat aattggtatt aaagcaattg aaagagtaaa ctccgctaca
      541 ctcattgttg ttccaaccct tgacctaatg gggcaatgga ctgaaattct ctcaaaacac
      601 tttgcaaacg caaaaattgg aaatatgggt ggtgggactg acgatattca agcaattact
      661 gtggctactt atgattctgc ttatttaaga gctgcaagca ttggaaacaa attttcgctc
      721 atagtatttg atgaggtaca tcatcttgca gcaccgggat atagatcgat agcagagcaa
      781 atggcagccc catacagatt aggtttgacg gcaaccatcg aaagagaaga taacttacat
      841 aaagattttc caaaattagt tggtggagtt gtttttcaag caaatccgtc gcaacttgca
      901 aagaacaagc acttggctcc ttatgaaatt gaaagaagac aggtgaaaat gacttcgcaa
      961 gagaagcaag aatatgatag aaattatgga acatatcaag tgtatctaaa taaatctgga
     1021 attaggatga atcacacagg cgcatttcag cgactaataa tgatgtcagc aaaaagtaaa
     1081 gctgcccgac aagcgctttt agcccgaaat agggcattgg atcttgcatt aaatagcaaa
     1141 tcaaaaatgg aggaattgag gaaaatactc atagaaaaca ggggtttaaa gactataata
     1201 tttactcaac acaatagctt ggtgcatgaa atatccaatc gcttcttcat accattgata
     1261 actcataaga caagtaaaga agaaaggcaa tatactttaa tggggttcaa agaaggacga
     1321 tacttagcaa tagttacatc aaaggttttg gacgaaggtg tagacgttcc agaggccgaa
     1381 cttggtataa tagtaagtgg aaccggaagt ggtagggaat ttatccagcg gctcggtaga
     1441 cttctgagac caaagagaga tatcgccaag aaggcaagat tgattgaatt aatctcatcg
     1501 gatacacatg aaacaattac cagtgcgaga aggaagaagg cactaac
//
LOCUS       DATLQL010000615         1468 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2460429, whole genome shotgun sequence.
ACCESSION   DATLQL010000615 DATLQL010000000
VERSION     DATLQL010000615.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1468)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1468)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1468
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2460429"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            222..1031
                     /locus_tag="VNB68_06210"
     CDS             222..1031
                     /locus_tag="VNB68_06210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36977.1"
                     /translation="MSIKSVTLIAVALACMLFISGTMRPGTLFPLPAANAQITVFPGT
                     EPQDQQNATPKAPATAGSISPKGPSPGFSAKDVSDTNSLQTDADIKNLIILIPDKRLT
                     DKNFLPQDATVVKGTKVIWINGDKNATHGIAVQDKDGTSVFSNETIPYQNGTSFTFDI
                     KGTYGYSDSQAPAAKGTINVIDAKDAPDNLSTNATMLTAGVYVVPAAEKSYFDKHFST
                     LGYKVVDSTKMKDPSTGANSELYVYLQKTGKYETIVKRTAVKLGFLQGKLG"
BASE COUNT          489 a          303 c          279 g          397 t
ORIGIN      
        1 aaattcataa tcaatattag tattgaaaca attaggtatc ttgtacaatc agttaataaa
       61 aaagaactca tcccctttga aaatttttcc tattaagcaa aaatgaaatt tttgactcca
      121 tcacagcttt gagtatttga ggttatgaaa tatatggtga ttcaaatgtc aacaactcta
      181 aacacaatgc attataaaca ggataatatc aagacgctcc catgagtata aagtcggtaa
      241 ctcttattgc agttgcgcta gcatgtatgt tattcatctc ggggaccatg agaccaggca
      301 cgttatttcc gcttcccgcg gcaaacgccc aaataacagt ctttcctggg acagagccac
      361 aagatcagca gaacgcaacg ccaaaagcac ccgccacagc aggttcaata agccccaagg
      421 gaccatcacc aggatttagt gctaaggacg tctctgatac aaattcgctc caaaccgatg
      481 cagatatcaa gaatctgatt attttgatac ctgacaaacg actcaccgac aaaaactttc
      541 tgccgcaaga cgcgaccgta gttaagggaa caaaagtaat ttggattaat ggagataaaa
      601 atgcgacaca cggaattgct gtacaggata aagatggaac gtcggtcttt tccaatgaga
      661 ctattccgta tcaaaacggt acatccttca cttttgacat aaaagggaca tacggctact
      721 ctgattctca agctccagct gcaaaaggaa ccattaacgt aattgatgct aaagatgctc
      781 ctgataattt atccacaaat gcgacaatgc ttacagcagg tgtatacgta gttcccgctg
      841 ctgaaaagag ctattttgat aaacatttct caactctagg atataaggta gtggatagta
      901 caaaaatgaa agatccatcc acaggtgcaa atagcgaatt gtacgtttat ctgcaaaaaa
      961 caggtaagta tgaaacaata gtcaaaagaa ctgcggtgaa attaggtttc cttcaaggaa
     1021 aacttggata ataccttaga ttagccgcct atttcttttt ttatctaatc gctgcaaacg
     1081 agtcttggca tgtctcaaag taagtcacgt cttttagagg ttgcactttt agggatagtt
     1141 tagactatta gacctcgcag atcgatagca tgacggccaa cttgcctggc taaggcaata
     1201 tataatttcc aattccgaca cagggtgaag aaactctaca accctcccct ccccctgaag
     1261 tatttcattc tataaatgcc ctcaattcat atcttctcaa ggaggttgag caagctatgg
     1321 caggtcaact aaatactgaa acacgggaaa tcgaggaggc tcctactgaa gatgagaaaa
     1381 aaatggggct tgaacatgaa attgaatgtc ctcgttgcaa tgatataatg aatttgtctt
     1441 ctgacttcga tcgtctatgt tatttttg
//
LOCUS       DATLQL010000616         1327 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_146626, whole genome shotgun sequence.
ACCESSION   DATLQL010000616 DATLQL010000000
VERSION     DATLQL010000616.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1327)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1327)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1327
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_146626"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1327)
                     /locus_tag="VNB68_06215"
     CDS             complement(<1..>1327)
                     /locus_tag="VNB68_06215"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HVD36978.1"
                     /translation="QSNLKTLADYEFSKKRVVDEIPPHVKLMKKLGIADYEPASDSGN
                     MRFYPKGKLMKSLLESHISRRISEYGGMEVETPIMYDSKHPTLQSYFNRFPARQYNVF
                     SDNRQLFLRFAACFGQFLMAKDFQISYKNLPLRLYELTRYSFRREKSGELVGLRRLRA
                     FSMPDCHALCKDLNQTKQEFLERFDLSLRVLNELGISPSEDVEMAIRFTSEFYEKNKN
                     FIEQLVSKFGRPVLVEIWPERFFYFTLKWEFNFIDNIGKAAALSTDQIDVENGERYNI
                     QFVDEDNTKKFPIILHNSPSGAVERVIYALLEKAARYSKLGRVPFFPLWLTHTQVRLI
                     PVSSTHIDFCEQLFIELTKNQIRADIDDRDESVRKKIRDSETEWIYYSLVIGDNEVKS
                     NQLVLRDRVNKSQHHVSLEEIIKMIESQIVDKPYLPLNLPSHLSRRPKI"
BASE COUNT          374 a          277 c          244 g          432 t
ORIGIN      
        1 attattttag gacgtcgaga aaggtgagat ggcaaattta atgggagata aggtttgtca
       61 acgatttgtg attctatcat tttgataatc tcttcaagtg agacatgatg ctgacttttg
      121 ttcaccctgt cgcgcaaaac aagttgattg ctcttaactt cattgtcacc aatgactagg
      181 ctgtagtata tccattccgt ttcagaatcc ctaatttttt tcctcaccga ctcatctctg
      241 tcatctatgt cggctctaat ctgatttttt gtaagctcga tgaatagctg ttcacaaaag
      301 tcaatatgag tcgaggacac tggaattagt cttacctgtg tgtgggtgag ccataacggg
      361 aaaaacggta ccctgcccaa ttttgaatag cgagcagcct tttcaagaag agcatatatc
      421 actctttcaa cggctccgct aggggaatta tgcaaaatta tcggaaattt ctttgtattg
      481 tcttcgtcaa caaattggat gttgtacctc tctccatttt ctacatcgat ctgatctgtc
      541 gaaagtgctg cggccttacc aatgttgtcg ataaaattga attcccactt caatgtgaag
      601 tagaaaaaac gctccggcca aatttcaaca agtacgggtc tcccaaattt acttaccaac
      661 tgttcaatga aatttttatt tttttcataa aattcacttg taaatctgat tgccatctca
      721 acatcttcac tcggagaaat tcctaattcg ttcagaactc ggagcgataa atcgaatctt
      781 tccaaaaatt cctgttttgt ctggtttaag tccttgcaaa gcgcatgaca atcaggcata
      841 ctaaacgccc ttaatcgccg caatccaacc agttcaccgc tcttttctct cctgaaagaa
      901 tacctggtca gttcgtacag acgcaagggt aggttcttgt aagaaatttg aaaatccttt
      961 gccatcaaga attgaccgaa acaagcagca aatcttaaaa aaagttgtct gttatcagag
     1021 aatacgttat attgtctggc tggaaaccgg ttaaagtagc tctgtaatgt gggatgttta
     1081 gaatcataca taatgggcgt ttctacctcc atacctccat attctgatat cctgcgacta
     1141 atgtgtgact ctaatagaga cttcatcaat tttcctttgg gatagaacct catattgccg
     1201 ctatcagatg caggttcata gtccgcaatt cctaattttt tcattaattt gacgtgaggc
     1261 gggatttcat caactactct cttttttgag aattcatagt ctgccaaggt tttgagattc
     1321 gactgat
//
LOCUS       DATLQL010000617         1441 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1389289, whole genome shotgun sequence.
ACCESSION   DATLQL010000617 DATLQL010000000
VERSION     DATLQL010000617.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1441)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1441)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1441
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1389289"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..876)
                     /locus_tag="VNB68_06220"
     CDS             complement(<1..876)
                     /locus_tag="VNB68_06220"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HVD36979.1"
                     /translation="MVFSNIYLESFNPNKFFSNKSYSCKRLLVPFKITPHYMLKVALV
                     GATGAVGQEFVIALNRHPWFELDLIVSSERTAGKKYIDALRDPNTAILRWHNKEEVPE
                     FAKDMVLSNINELDPGKYDLIFAALESEDAKQIEPRLAAHVPVISTAAAFRYENDVPI
                     LIPGINDDHADMLEFQKKNRNWQGFIAPLPNCTTTGMAITLKPIMDRFGVQRVFMTSM
                     QAISGAGRSPGVVALDILDNIIPYIPKEEEKVQVETKKILGEFSKNVISPADIKVSCT
                     CTRVPVLDGHTEAVFV"
     gene            887..>1441
                     /locus_tag="VNB68_06225"
     CDS             887..>1441
                     /locus_tag="VNB68_06225"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HVD36980.1"
                     /translation="MTTGSCSHGGIHSAGPHIVKIDFSSSVNPLGVSISAITKLKKCL
                     RTLSCNYPDPECADFKENLIRYLDGRISIDQINVGNGATEIIHNFARSFVKKAVIIPS
                     PTFCEYELASGRVGAKAKFVPLSDWEIDPDAILDSAKNIDAIFLCNPNNPTGILSNRS
                     IYKILERSNDSTKILIDESFMELTD"
BASE COUNT          419 a          296 c          282 g          444 t
ORIGIN      
        1 tacaaataca gcttctgtat gtccatcgag tacagggacc ctagtgcagg tacagctaac
       61 cttgatgtct gcaggcgaaa ttacattttt gctaaattca ccaagtattt ttttcgtctc
      121 gacttggact ttttcttctt ctttgggaat gtatggtatg atattgtcca atatgtccaa
      181 tgcgaccacg cctggtgacc tgcctgctcc agatatggcc tgcattgatg tcataaacac
      241 tctttgaaca ccaaaacgat ccatgattgg ttttaaggtt attgccattc ctgtggtagt
      301 acaatttggc aagggggcaa tgaaaccctg ccaatttcga tttttcttct ggaattctag
      361 catgtcagca tgatcatcat ttattcctgg aatcaggatg ggtacatcat tttcatatct
      421 gaatgccgcg gcagtactta tcacagggac atgtgcagct aacctcggct cgatttgctt
      481 tgcatcctcg gattctaaag ctgcaaatat gagatcatat tttccaggat ctagctcgtt
      541 aatgttgctt agaaccatat ccttagcaaa ttcagggact tcttccttgt tatgccacct
      601 aagtatggct gtatttggat cgcgtaatgc gtcaatgtat ttcttacccg cagttctttc
      661 tgaagatacg attagatcca attcaaacca aggatgtcta ttcagagcaa tgacaaattc
      721 ttgaccgact gctccagtag cacctacgag ggcaactttt agcatatagt gtggcgttat
      781 tttgaatgga actaataatc gtttacagga atatgacttg ttgctaaaga atttgttagg
      841 attgaatgat tctaaatata tattactaaa taccaatctt gagcaagtga ccacaggctc
      901 ttgctctcat ggtgggatcc actcagcagg accacatatt gttaaaattg actttagttc
      961 cagcgttaat ccactgggag tatcaataag cgcaataact aaactcaaga aatgcttaag
     1021 gacactttcc tgtaattatc cagaccccga atgcgcagac tttaaagaga atttgattcg
     1081 ttatctagat ggaaggatat ccattgacca aattaacgta ggaaacgggg ctactgaaat
     1141 aattcataat ttcgcaaggt ccttcgtcaa gaaggcggta ataataccct cgcccacttt
     1201 ttgcgaatat gaactcgcct cgggaagggt aggagctaaa gcgaagtttg tgcctctttc
     1261 agactgggaa atcgatcctg atgctatact agacagtgca aaaaacatag atgcaatttt
     1321 tttatgcaat cccaacaatc ccaccggcat tctctctaat agatctattt ataaaatatt
     1381 ggaaaggagt aacgattcaa ccaaaattct tattgatgaa agctttatgg aattaaccga
     1441 t
//
LOCUS       DATLQL010000618         1153 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2280465, whole genome shotgun sequence.
ACCESSION   DATLQL010000618 DATLQL010000000
VERSION     DATLQL010000618.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1153)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1153)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1153
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2280465"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            164..>1153
                     /locus_tag="VNB68_06230"
     CDS             164..>1153
                     /locus_tag="VNB68_06230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36981.1"
                     /translation="MMEREETNIANTYRISKRTILFGVVPIIVIGAMIILLLNSPGIL
                     FQNSVKPLPKISIEKVEFSDGGIVAFIRNTGPSNTTIAQADVNDRIHPAAIEPSRILT
                     RLADAKVIIPFVWNIGEPYKIGITTDDGTRFEKTVDSAAPAPRPTVGQASTFAIIGTY
                     VGVIPVMMGIVWYPFIRRLSPNKYNFFLSLTAGLLVFLGIDALLESNEIAVNALAPAF
                     NAQILIIMVAIVTFISLLYVSQRLIQRASKRSKPDTEYKSGYSSHSEPDSELSDIRSS
                     TTSFQQQLLIRPIAISMMIAIGIGLHNFGEGLAIGAAVLLGEVALSSFLILGFT"
BASE COUNT          369 a          208 c          225 g          351 t
ORIGIN      
        1 cagagaaagg atggacaggg ctattttttg taaaagacaa tacaagtgcg tctgttaatc
       61 aaattaatca aaatttaaac gttacctcaa caatgaataa cacaatttat tctaaatcta
      121 attttagtaa cgcaactaac attgtgccaa caggaggctt gaaatgatgg aaagagagga
      181 aactaacatt gctaatactt acagaatttc taagaggact atactatttg gagttgtccc
      241 aattatagtt attggagcaa tgataatatt gctattaaat tctcctggaa tattatttca
      301 aaactctgtc aaaccacttc ctaaaatttc tattgagaaa gttgagtttt cagatggtgg
      361 tatagtagcc tttataagaa acacgggacc ttcaaatacc accattgctc aagctgatgt
      421 gaatgacaga atacatcctg cagcaataga gccaagtcga atattaacta ggctggcaga
      481 tgcaaaagta ataatcccat tcgtatggaa cattggtgaa ccatataaga taggaataac
      541 tacagacgat gggactagat ttgagaaaac ggttgactct gcagctccag cgccgcgtcc
      601 aactgttggg caggcttcaa catttgctat cattggtaca tatgtaggcg ttattcctgt
      661 gatgatgggt attgtatggt atccatttat tagaaggtta agtcccaaca agtacaactt
      721 tttccttagc cttactgcag gattattagt ttttcttggt atagatgctc tactcgagag
      781 taacgagata gcagtgaatg ctcttgcgcc tgcctttaat gcacagattc tgattatcat
      841 ggttgcaatt gttactttca taagcctcct atatgtttca cagagattga ttcaacgtgc
      901 ctcaaagcga tccaaacctg acactgaata taagtcagga tattcaagcc attcagagcc
      961 tgattcggaa ctaagtgata tcagatcttc tactacgtca ttccaacaac agctattgat
     1021 aaggcctatt gccatatcta tgatgattgc aattggtatc ggattacata atttcggaga
     1081 aggcctggct attggagcag cagtcttgtt aggagaagta gctttaagct catttttaat
     1141 tttaggattc aca
//
LOCUS       DATLQL010000619         1469 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2280520, whole genome shotgun sequence.
ACCESSION   DATLQL010000619 DATLQL010000000
VERSION     DATLQL010000619.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1469)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1469)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1469
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2280520"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(22..699)
                     /locus_tag="VNB68_06235"
     CDS             complement(22..699)
                     /locus_tag="VNB68_06235"
                     /inference="COORDINATES: protein motif:HMM:NF038353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxLYD domain-containing protein"
                     /protein_id="HVD36982.1"
                     /translation="MQNTSSFIDDDKIIHLYGELKNNTNRTQTNIVVNATFYDSHGKL
                     LNEFERAIELRTLNPGGISPFEILYTDPKTSDSVTRFELSAAGTGVELKSRELSVSSD
                     NSRLDLYGFYYINGKVVNKGSYTASNSMVVATLYDKDGKVVAIGRAQTEPVNITSQSE
                     AAFGIAVTDKAQTHKVKRFTLIADSDEYLTVPEFSVLSLSLLFFIVLLAAVFSSIRWY
                     SKKNISL"
     gene            complement(1130..>1469)
                     /locus_tag="VNB68_06240"
     CDS             complement(1130..>1469)
                     /locus_tag="VNB68_06240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HVD36983.1"
                     /translation="KVIAVQKNESLHDAINKMRSNSISQIPVFDGSRVTGILSEDGLA
                     KTIMESNIKNLRESIISMVMDPPPPIVDVATPAKALITLVRFSKCVLVSEKGNVIGII
                     TVTDTLKMVE"
BASE COUNT          449 a          291 c          276 g          453 t
ORIGIN      
        1 aattcctcta cagacatcat ctcatagaga gatatttttc tttgagtacc atcttataga
       61 gctaaatacc gcagctagca acacgataaa gaacaaaagc gataagctca acacagaaaa
      121 ttctggtacc gtcaaatact catcagagtc ggcgatcagt gtgaatcttt ttactttatg
      181 agtttgtgct ttatcagtta cagcaattcc aaacgctgcc tcagactgag aagtaatgtt
      241 cacaggctca gtttgagctc ttccgatagc aacgactttg ccgtccttgt catataaagt
      301 agctacaacc atggaattgc tagcggtata agacccttta ttgactacct tcccattaat
      361 ataataaaag ccatatagat ctagtctaga attgtcacta ctaacgctca gctctctaga
      421 ttttagttca acacctgtac ctgcggcaga tagttcgaag cgggttacgc tatctgaagt
      481 tttaggatct gtatataata tttcgaatgg agatatacct ccaggattga gtgtccttag
      541 ttcaatagct ctctcaaact catttagcaa tttaccgtgg ctatcgtaaa acgtggcatt
      601 tacaacaata tttgtttgag ttctgttggt attgtttttc aattcaccat acagatgtat
      661 tatcttatca tcgtctatga acgatgaggt attctgcatt acgaatttac tctgaggact
      721 tacgcttcca gttataatca ggggaaaaaa aagggctaat aagaggtgta tcgtcatgaa
      781 tctctaatca taggatggtt ctaagtcgat atataaacac acaaataatt tctgtggtcg
      841 gaaagaaggc ctgaaggcct gaacagagct tgtaggattg acgccaaagc tgcagaaata
      901 atgggcaggg ctcacattct aaagtcagag cattacaaat gattcaaata agtcccattg
      961 tatatcgcat tactgaagag tattgacgtc aaataaaagt tgcgacataa aaaaatgtcc
     1021 tctctgtgat tctcctctag cagaggatag tgaactgact ttatgttcag aatgcataaa
     1081 attcgcagat tgttgcatag gactagaaaa actgagcgaa taaatattgc tactccacca
     1141 tctttaacgt gtcagtcact gttataatgc ctattacatt tcccttctca cttactaaaa
     1201 cacattttga aaatcttacg agggtgatta atgccttggc gggagtcgct acatcgacaa
     1261 ttggtggagg cggatccata accattgaaa ttattgactc gcggaggttt tttatgtttg
     1321 attccatgat tgtctttgcc aatccatctt cactcaatat tccagtcacc cgggagccat
     1381 caaagacagg aatttggctt atagaattgc ttctcatttt gttgattgca tcatgcaaag
     1441 attcattttt ctggacagca atcaccttg
//
LOCUS       DATLQL010000620         2367 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1923428, whole genome shotgun sequence.
ACCESSION   DATLQL010000620 DATLQL010000000
VERSION     DATLQL010000620.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2367)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2367)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2367
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1923428"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..934
                     /gene="purD"
                     /locus_tag="VNB68_06245"
     CDS             <1..934
                     /gene="purD"
                     /locus_tag="VNB68_06245"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: protein motif:HMM:TIGR00877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004637 - phosphoribosylamine-glycine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HVD36984.1"
                     /translation="DDAKQFVTSLSEPPVIKVDGLAQGKGVIVCHDLPEAIRTIDKIL
                     KYKEFGSLGNSIVVEKRLYGNEVSFIALCDGHSIVPLDSSQDHKNVWDGDNGPNTGGM
                     GAYSPAPIIDEQMNSNIMKTIMEPTLNALKKSGLSFKGFLYAGLMIERSTNVPYVLEF
                     NVRLGDPECQSILTRMDSDLVEYLEAIAETRLASISQIKWKKEHAVCVVMTSKGYPGK
                     YEEGKVVRGLNSSIGESVYIFHSGTARDRQDRIITAGGRVLSVTALGTDIETAIDRAY
                     STVRNIHWGDNEEYYRKDIGYKALNSNNIKSEFQ"
     gene            complement(906..1493)
                     /locus_tag="VNB68_06250"
                     /pseudo
     CDS             complement(906..1493)
                     /locus_tag="VNB68_06250"
                     /inference="COORDINATES: protein motif:HMM:NF013934.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0030272 - 5-formyltetrahydrofolate
                     cyclo-ligase activity [Evidence IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
     gene            complement(1509..>2367)
                     /locus_tag="VNB68_06255"
     CDS             complement(1509..>2367)
                     /locus_tag="VNB68_06255"
                     /inference="COORDINATES: protein motif:HMM:NF014881.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="bifunctional 5,10-methylenetetrahydrofolate
                     dehydrogenase/5,10-methenyltetrahydrofolate
                     cyclohydrolase"
                     /protein_id="HVD36985.1"
                     /translation="IQLPAKKIDGLMVSRYLKDKIREDVSKLTEHGIKPCLATVLMGD
                     DEASATYVRNKQLAATDVGILTIDKRLPSTASAEELINLLDELNSDKYVHGILLQLPL
                     PKHIDQFLAISRIDKNKDVDCLTPYNAGLLFTGKARLKPCTPSGIIELLDYYKIDVGG
                     MDVVIINRSNLVGIPLYLLLLQRDSTVTICHSKSRNINEKLIRADCIVTAIGDRNRFL
                     LKGDMVKPGVVVIDVGINRIKGKLHGDVDFASVYDKASYITPVPGGVGPMTVTMLLKN
                     TVTAADTNK"
BASE COUNT          713 a          468 c          454 g          732 t
ORIGIN      
        1 cgatgatgca aaacagttcg tcacttcctt gtcagaacct cctgtgataa aagtggacgg
       61 tctagcgcag ggtaaaggtg tcatagtttg tcatgatctc ccagaagcaa ttagaacaat
      121 agataaaata ttgaaataca aggagtttgg aagcctgggt aacagtatag tcgtagaaaa
      181 aagattgtac ggaaatgaag tttcctttat agctctatgt gacggacatt caatagtccc
      241 gttggattca agtcaggacc acaagaatgt ctgggatggg gataacggac caaatactgg
      301 aggcatgggg gcctactcac ctgcacccat catcgatgaa caaatgaatt ccaacatcat
      361 gaagactatc atggaaccca ctttaaacgc attaaagaaa tcaggtctgt catttaaggg
      421 atttctatat gctggtctga tgattgaacg tagtacgaat gttccatatg tactcgagtt
      481 caatgtaagg ttgggtgatc ctgaatgtca atcaattttg acaagaatgg attcagatct
      541 cgtagaatat ttggaagcta tagccgaaac aagacttgct tcgatatctc agataaaatg
      601 gaaaaaagag catgctgtgt gtgtagttat gacctcgaaa ggttatccgg ggaagtatga
      661 agagggtaag gtagttcgtg gattaaactc ctctatcgga gaaagtgttt acatattcca
      721 ttcaggtact gctagggatc gtcaggatag gattattaca gccggtgggc gagtgctctc
      781 tgtcaccgct ctgggtactg atatagaaac agcaatcgat cgagcttatt ccaccgtaag
      841 aaatatccat tggggggata atgaggaata ttataggaag gatattggat ataaagcatt
      901 aaactctaac aatataaagt ccgagtttca gtgactataa agtccaattt ttgatcataa
      961 gataatttag gtaaattatg gtctaatatc tgaaaatcat gagcaacccc cacggaactg
     1021 gtgtaagact tttttgccat atatctgtca taatatccga aaccatatcc gagtcggtat
     1081 cactgagtat caaaagcgat tcctggtatt atcagaaggt caagcttttc aaccagtctt
     1141 tcttctaatg cctttggctc tttcagtttg aaacgcgagc ttttaacaag attaccgttg
     1201 agatctgctt cttcaattgc ataaaaagat agagtaccat ttccttcaat cttgggtaat
     1261 gccaaagtct tcttatcagc taatgcatga tgcattatct tccaggtttc gacttccatt
     1321 ccaatcggag cataacttcc tataatcgtt ccattttggt actcctgtag acccattaat
     1381 ctatcttgaa tcttaacgct attgtcacga gctttatttg catccaataa ttccctcatc
     1441 ttaagaagtt ctcttcttat agcatgttta tttctctgac acgaatcaga catagtgaca
     1501 cttctgtact atttgttagt atcggcagca gtcacagtat ttttcaataa catcgttacc
     1561 gtcattgggc ctacaccccc aggtacagga gttatatagg aagctttatc atatacagaa
     1621 gcaaagtcca catctccatg gagctttccc ttaatccggt ttatacctac gtctattaca
     1681 acaacacccg gtttaaccat gtcaccttta aggagaaacc tattgcgatc tccgatagca
     1741 gtaactatac agtcagccct gattaatttt tcattgatat ttcttgactt agaatgacat
     1801 atcgtcacag tactgtcacg ttgcaaaaga agcaaataca acggtatacc taccaggttg
     1861 cttcggttaa taataactac atccattccg cctacatcaa ttttataata atctaacaat
     1921 tcaatgattc ctgatggcgt acagggttta agccttgctt tgccagtaaa gagaaggccc
     1981 gcattatatg gagtcaggca atccacgtct ttatttttat cgattctgct gatcgctaaa
     2041 aattgatcaa tatgttttgg taacggtaac tgtaaaagta tgccatgaac atacttatca
     2101 gaattcaatt catctaataa gtttattaat tcttctgccg aagcagtgct tggtagtctt
     2161 ttatcgatcg ttaaaatgcc aacatcagta gctgctaatt gtttatttcg tacatacgta
     2221 gctgatgctt catcgtcacc cattaatact gttgctaggc aaggcttaat tccatgttca
     2281 gttagctttg atacatcttc tctaatctta tctttcaggt acctcgagac cataaggcca
     2341 tcgatctttt ttgcaggcaa ttgaata
//
LOCUS       DATLQL010000621         1105 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2280773, whole genome shotgun sequence.
ACCESSION   DATLQL010000621 DATLQL010000000
VERSION     DATLQL010000621.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1105)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1105)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1105
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2280773"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..996)
                     /locus_tag="VNB68_06260"
     CDS             complement(<1..996)
                     /locus_tag="VNB68_06260"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:NF013015.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006261 - DNA-templated DNA replication
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HVD36986.1"
                     /translation="MFKNPKDNNIVSRLIFHLDLDYFYAQCEEIRSPELRNHPLVVCV
                     YSGRNPDSGVVSTSNYKAREFGVKSGMPIKIAKSNLANEDAEFLPIDMSYYNHLSILA
                     MESVRKIADAYEYVGIDECYADFSRYSRSDFSRARKIADFIKSEIKVSTNLTCSIGVG
                     PNKLVAKIASNFQKPDAITIINPQEVKAFIARCDIEDIPGIGPKNRIKLESSGIESVS
                     HLAKFDLFRLKELFGYKIATYLQNAARGIDDTPIRPHVSKQIGRIVTLKNDVTNIENI
                     FPILSSLSSLVYDTLMKRKLSFKTIIVRIFLHDLRQVTCSRNLKLSSASLEELQNV"
BASE COUNT          324 a          206 c          217 g          358 t
ORIGIN      
        1 tacattttgt agttcctcca gggaggcaga ggatagtttg agatttcgtg aacaagtaac
       61 ttgtctgaga tcatgtaaga atatcctgac aatgatggtc ttaaatgata acttcctctt
      121 catgagagtg tcataaacta atgaagaaag tgaactcaag atggggaata tattttcgat
      181 attggtgaca tcatttttaa gtgtcacaat tctgccgatc tgtttactta cgtgtggtct
      241 tattggtgta tcatcaatcc cgcgtgctgc attttgaaga taagttgcaa tcttgtagcc
      301 aaataattcc tttaatcgga atagatcaaa cttggctaag tggcttacag actcgatgcc
      361 cgaactttcc agtttgatcc tgttcttggg accaatgccc gggatatctt caatatcaca
      421 cctcgcgata aacgctttga cttcttgagg atttatgatc gttatggcgt caggtttttg
      481 aaaattagaa gcaatcttgg caacgagttt attgggccca acaccaattg aacaagtcag
      541 attggttgaa acttttatct cacttttgat gaaatcagca atttttctag cccttgaaaa
      601 gtcagacctt gaatacctac tgaaatcagc ataacactca tcaattccaa catattcgta
      661 tgcatcggca atttttctaa cggattccat agctaatatc gagaggtgat tataataaga
      721 catgtctata ggaaggaact cggcgtcttc attggctaga ttagatttag ctattttgat
      781 tggcataccg gacttgacac cgaattcacg agctttgtaa ttggaagtac tgactactcc
      841 agaatcaggg tttcttccag agtagacaca taccactaat ggatgatttc ggagttcagg
      901 acttcttatc tcttcacatt gcgcatagaa gtagtcaaga tcgaggtgaa aaattaagcg
      961 cgatacaata ttattgtctt tgggattctt aaacaaaagg ctgctcccat tttttatatt
     1021 tacctaataa tatcaagggt gtctcgtgca tcagacaaca atctattctc gctgtccgaa
     1081 ttaaaaatta tggtggcttg tattt
//
LOCUS       DATLQL010000622         1060 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_681340, whole genome shotgun sequence.
ACCESSION   DATLQL010000622 DATLQL010000000
VERSION     DATLQL010000622.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1060)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1060)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1060
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_681340"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            129..998
                     /locus_tag="VNB68_06265"
     CDS             129..998
                     /locus_tag="VNB68_06265"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HVD36987.1"
                     /translation="MALGIILPNIYNPFIIVPKQANAGNPNDLNSSNKPDDKPPPLPR
                     TILLDPLLLSKVKETVNNRNNSDNNKQYSSFNYLNAHVLTMATELSFGKGSAQYNFVD
                     NDLKSAATNPNIKWIIVNYHTPMYTSPNTCSASSCNGSSPYRDVYHPLFDKYGVDLVL
                     QGHVHNYQRTYPLKYDPVSPSSPTITSTNTSSYTNPQGEIFATVGTGGINLRGFSDKS
                     YFVVYQEAKKFGMLDILMADDGSKLTGRYYANGASSPSDQFSISKPTASLASSRNGVN
                     TNLTGNESQVAEN"
BASE COUNT          351 a          222 c          196 g          291 t
ORIGIN      
        1 aatttcgtct gtatcggcaa aactattttc tgttttattt aataggtagt atagacatag
       61 acaacaacaa gtgatggttc attagaaacc tagtaaccaa attcaggggt ttaatcgtaa
      121 taggaatatt ggcattagga ataattctac ctaacatcta caatcctttc attatagttc
      181 caaaacaagc aaatgctgga aaccctaacg atctgaacag tagtaataaa ccagatgata
      241 aaccaccccc actcccgcga acaatcttac tagacccctt attactaagt aaagtaaaag
      301 agactgttaa taatcgcaat aatagtgata ataataagca gtactcctct ttcaattatc
      361 tgaacgctca cgttctaact atggcgacgg aattgagttt tggtaaaggc tctgcacaat
      421 acaattttgt tgataacgac ctaaagtcag cggctactaa tcccaacata aagtggatta
      481 tagtaaatta tcatacacca atgtatacct cgcctaacac ttgctcagcg tcttcgtgta
      541 atggaagcag cccgtacaga gatgtttatc atccattatt tgacaaatat ggagtggatc
      601 ttgtactcca agggcacgtc cacaattatc aacgaacata tcctctgaag tacgatccgg
      661 tttctccttc aagccctacg ataacaagta ccaacacttc aagttatact aatccacaag
      721 gggagatatt cgcaaccgtc ggaacgggag gaattaactt acgtggtttc tcggacaagt
      781 cttactttgt agtgtatcag gaagccaaaa aatttggaat gctagatatc ttaatggccg
      841 atgatgggag taagctgacc ggcaggtact atgcaaatgg tgcttcctct ccttcagacc
      901 agttcagcat atccaaaccg acagcttcgc ttgctagctc taggaatgga gtcaacacaa
      961 acctgactgg taacgaaagc caagtcgcag aaaactgagg atcagttttt ggtagggatc
     1021 ataatattat taaattgcct gatgcgtcag acattaataa
//
LOCUS       DATLQL010000623         1138 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2461482, whole genome shotgun sequence.
ACCESSION   DATLQL010000623 DATLQL010000000
VERSION     DATLQL010000623.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1138)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1138)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1138
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2461482"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1128
                     /gene="prf1"
                     /locus_tag="VNB68_06270"
     CDS             <1..1128
                     /gene="prf1"
                     /locus_tag="VNB68_06270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003747 - translation release factor
                     activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor aRF-1"
                     /protein_id="HVD36988.1"
                     /translation="QLRNEAGTASNIKSDLTRTHVQDALNRTIEHLKLFKEPPENGLV
                     IFCGAIPTGKGFGTEKIELYSVIPPKPVQINLYRCDDHFWIDHLKDMMKDDKVTGILA
                     LDTQEAGLGILTGDRWEVIDTLTSGVAGKHRQGGQSARRFERLRDNELNEFYHRVADH
                     AQKVFVDQFKVRGIIVGGPGPTKDNFLREEYLDYRLQNNVISTLDSSYSGDEGVRELI
                     DKIQEQGVMTEYRLMEEKKMLKKFMSEVYSGKGLGIYWIFDVIKALKNGIAELVIVTD
                     DIGYLKIDVKCKRCSNIQEQFLDRSRLISARQEILSKPCPSCGAVDFEIVEKDIVDYL
                     EEMTIITGSKLEVISGRTEEGAQLASLGKIGALLRFRPASA"
BASE COUNT          383 a          179 c          265 g          311 t
ORIGIN      
        1 caattacgaa atgaggctgg aactgcatcg aatataaagt ctgatctaac gaggacacat
       61 gtccaagatg cgttaaatag aactatagaa caccttaagc tctttaagga accgcctgaa
      121 aatggtcttg tcattttctg cggcgctatt ccaacgggaa aaggttttgg tacagaaaaa
      181 attgaactct attctgtcat tccgcccaaa cccgttcaaa ttaatcttta tcgatgtgac
      241 gatcattttt ggatcgatca tttaaaagat atgatgaaag atgataaggt aacaggaata
      301 ttagcattag atacgcagga ggccggtctt ggcatcctaa ctggagatag atgggaggtt
      361 atagatactt taacttctgg ggtcgcagga aaacaccgac aaggaggtca atctgctaga
      421 agatttgagc gacttcgcga taatgagtta aatgaatttt atcatagggt agctgaccat
      481 gcccaaaaag tctttgtcga ccaattcaaa gtcagaggta tcatcgtagg tggacctggt
      541 ccaacaaagg ataactttct tagagaggag tatcttgatt atagattgca gaataacgtt
      601 atttcgacac tggattcctc atattctggg gatgaaggag tcagagaact cattgacaag
      661 attcaagaac aaggagtaat gacagaatat cgtctgatgg aagaaaaaaa aatgttaaaa
      721 aagttcatga gcgaggtata ctctggaaaa ggtcttggca tatattggat cttcgatgtg
      781 ataaaagcgt tgaaaaatgg cattgctgag ctggtcatag ttactgatga tattggctat
      841 ttgaaaattg atgtaaaatg taaaagatgt agtaacattc aagagcaatt tcttgatagg
      901 tctagattga tttcagcaag acaggaaata ttatcaaaac cttgtccttc ttgtggagca
      961 gttgactttg aaatagttga aaaagatatt gtcgactact tagaagaaat gactataata
     1021 acaggtagca agttagaggt catatccggc agaacagagg aaggagcaca gttggccagc
     1081 ttgggaaaaa ttggcgcact cctgcggttt aggccggcat ctgcatgaaa taggattt
//
LOCUS       DATLQL010000624         1241 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_681624, whole genome shotgun sequence.
ACCESSION   DATLQL010000624 DATLQL010000000
VERSION     DATLQL010000624.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1241)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1241)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1241
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_681624"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            502..738
                     /locus_tag="VNB68_06275"
     CDS             502..738
                     /locus_tag="VNB68_06275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36989.1"
                     /translation="MALESREKIKLLDEYIEILKQDLLFLMAERKRKPENMVTPKIIS
                     VRQELDRVVQEKMRLSQICHSNISNRIAPTAASA"
BASE COUNT          415 a          232 c          250 g          344 t
ORIGIN      
        1 ttattaaaaa attcttaaga gaaaatcatt cgccagagac taccacttta ggtgcgaaac
       61 ctaacagata ggtctcagaa acctctattg agtatcatac actgccagca agccaatgga
      121 ttctcagttc ttctaaggaa cttccttagt tttctgccgc aaatgtcaca gcaattagtt
      181 tgatgatgtt tcgttataat cgccatatgt ctatctaatg aagccaagca ccaactagga
      241 tgaaaataaa tcgactagca ctgaaagggg agtgggaggc ggtaacatac ctccataggc
      301 tatgtcttgg tgaggctctt gggtggccct ctaagatttt taacaatcat gctttaaaga
      361 taagaaccac caaccagaca gcaagaacca ttggagaatt atccacatgc gaaacgtggt
      421 atttttctat ctcatcttag agacgaaaag cttacatacc ctaaaccagc aacaagtaga
      481 cttacaggag agcaatagaa catggctcta gagtcaaggg aaaagataaa actactagat
      541 gaatatatag agattctaaa gcaagatttg cttttcttga tggcagaacg caaacgcaaa
      601 cctgaaaata tggtgacccc taaaattata tcagtcagac aagaattaga tagagttgtt
      661 caagaaaaaa tgaggttaag tcagatttgt catagcaata tcagtaatag aatagctccc
      721 actgcagcta gtgcttagta tcttggaaaa ataattgtaa cgttcacgat gcaaataata
      781 ctcagattgt agtcggctga cgcaagctat ctaggggtta gcgaggggct ctaaaagaat
      841 gagagtggtg agaatatgtt atctgatatc aacgtctagc tttgtttagt tggaagcacc
      901 tgacgcactt tggtatttcc tattgatttg tttatgatga aaatgttagt actagacggc
      961 tctagttcct ttcactatag aaacactgga ggtactagac agggggtgct catagcttga
     1021 gaatcatcta agtttttatt attacatcaa taacgagaaa aatcaagtat acaagtctcg
     1081 ataaaaagag ctaagttggt ccataacttc tgagtaaacg gattcatcag aagcatgaca
     1141 gtttggcggt cagccaactt caatcagaac attgtattac cgttgaggct tttctcaggt
     1201 atcctctgta gcacatccca atgctcaaca atcttgccat t
//
LOCUS       DATLQL010000625         1174 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2104693, whole genome shotgun sequence.
ACCESSION   DATLQL010000625 DATLQL010000000
VERSION     DATLQL010000625.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1174)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1174)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1174
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2104693"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..197)
                     /locus_tag="VNB68_06280"
     CDS             complement(<1..197)
                     /locus_tag="VNB68_06280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36990.1"
                     /translation="MFDKIAKKISTYDKLLSFALALCMISLVLLSVYDLRPANAAAGS
                     SSNIVNGAVAGAISGKSGGAVA"
     gene            complement(498..>1174)
                     /locus_tag="VNB68_06285"
     CDS             complement(498..>1174)
                     /locus_tag="VNB68_06285"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HVD36991.1"
                     /translation="TRINHVLNSVLPDYEILLVNDGSNDNTLALIHQQQNNDPHLRVI
                     SYSLNKGKGHAIKTGVLRSSGKVIVFLDGDRDVSPLTLRDYIKELETCDLVIASKRHP
                     LSIVNAPISRKFLSRGFNLLVRIMLGIKIKDTQSGLKAGDGDALRRIFKSVAVKRYAF
                     DVELLAIANAFDLKIKEMPIDITLNSRFKISEITKMFIDVIAVFYRYRIKRTYQKRRE
                     SHTEIL"
BASE COUNT          340 a          247 c          205 g          382 t
ORIGIN      
        1 gcaactgctc caccggactt tccagaaatt gcaccagcaa cagcaccatt gacgatattg
       61 gacgacgaac ccgcagccgc attagctggt cgtagatcat aaacagataa taacactaag
      121 ctaatcatgc ataacgctag cgcaaaactc agcagcttat catatgtaga aatttttttg
      181 gcaattttat cgaacatagc taatcaacgt ttacattcta taaatggagt tctcctagtg
      241 tctccgctag gaaaacgagt tcagtatgca tagaaagcat agcatatatt tttgctctaa
      301 tgggaacccc ggtaagacga tgatatctta ttattaccat ttataatctc tttgaaccct
      361 aaatctctat taggtcaatt ctgatatttt ttctgcttct atctttgttt ttgatatacc
      421 ttcttaccgg cgtgcttatg tcagatttcc agcctaagct cttaattcag gagtatgaaa
      481 taaccctccc ttattctcta cagaatctct gtgtgtgact cccgacgttt ctgataagta
      541 cgttttatcc tgtatctata aaatacagca attacatcaa tgaacatttt tgttatctct
      601 gaaattttaa atctgctgtt aagagtaata tcgatgggca tttcctttat ttttagatcg
      661 aacgcattag caattgctag caactcaacg tcgaatgcgt atcgctttac agccacggat
      721 ttaaaaattc tgcgcaaggc atcgccatcg cccgccttaa ggcctgactg tgtatcttta
      781 atttttatcc caagcatgat tcgcaccaat aaattaaaac ctctgcttaa gaattttcgg
      841 gatataggag cattcacgat ggagagtgga tgtcttttag acgctataac taagtcacaa
      901 gtctctagtt ctttaatata atccctcaat gttagaggag agacgtcccg atctccgtct
      961 aaaaacacta tgactttgcc actagatcta aggacgccag tctttatagc atgtcccttg
     1021 cctttattca aagaatatga tataactctc agatgaggat cgttgttttg ctgctggtga
     1081 ataagtgcga gggtattatc attgctcccg tcgtttacaa gtaatatttc atagtctggt
     1141 aaaactgagt tgagcacatg attgattcta gtta
//
LOCUS       DATLQL010000626         1862 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2461650, whole genome shotgun sequence.
ACCESSION   DATLQL010000626 DATLQL010000000
VERSION     DATLQL010000626.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1862)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1862)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1862
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2461650"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..235)
                     /locus_tag="VNB68_06290"
     CDS             complement(<1..235)
                     /locus_tag="VNB68_06290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36992.1"
                     /translation="MKFNLILSSSRNREGDAVDEFIKLIEENLEESPIVEISDIQGII
                     LAFTETDPLEVIDLFNKMVTEEPWQFRYILRVIP"
     gene            488..1261
                     /locus_tag="VNB68_06295"
     CDS             488..1261
                     /locus_tag="VNB68_06295"
                     /inference="COORDINATES: protein motif:HMM:NF024258.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase family protein"
                     /protein_id="HVD36993.1"
                     /translation="MAELSIVPRRPALLMHTKLEGQNQSILVVSDLHIGFAHWFQSEN
                     VSIDWYQIAEETEKELEKIVTSCKANSIVLLGDIKNNVSGINKGDWKVVPKFLQSLSQ
                     ICKVYFVPGNHDSKIRLLIPDSISTIGVTGMTIDDTLLIHGHTMPSSLTSNVKKVILG
                     HVHPVFFKSDSVMNGQKVWVFLRIRTDVIFPSKKGSIDVIIMPSYNRFIVNQSKVSRR
                     GQISPLVDRILKKKAVEKCLILSMDGAILGNEELLETLF"
     gene            complement(1276..>1862)
                     /locus_tag="VNB68_06300"
     CDS             complement(1276..>1862)
                     /locus_tag="VNB68_06300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="carbamoyl phosphate synthase large subunit"
                     /protein_id="HVD36994.1"
                     /translation="IKVPQFSFMQLEGADVVLGVEMQSTGEVACFGESFYDALSKAYE
                     AAGYSLPLSGSALITVGGQRYKEKLLPLLSVVNSMGFKILATEHTAEFIKNNTKANVE
                     EVYKISEPSRKPNIADLLYNREIDFIINIPSTSTIEKYVGMLYDEYQIRRKAVEMGIP
                     VLTTVEAATSFVESLRWRIKFKPTINSLSGYVEF"
BASE COUNT          575 a          338 c          363 g          586 t
ORIGIN      
        1 ttggaataac tctaagaata tacctgaatt gccatggttc ttcagtgacc attttgttga
       61 acagatcaat gacctctaat ggatcagttt cagtaaatgc aagtattatt ccttgaatgt
      121 cacttatttc aactattgga ctttcttcta gattctcctc aattaatttt atgaattcgt
      181 caactgcgtc accttctctg ttccgagaag aagacagtat caagttaaat ttcattatac
      241 cgcaacccta tggtaaaaag tactccactt caggtcgaaa tttcatggtc aggatcttat
      301 catgactata atagaaatcg atgctataag gatcacggtg taattttttt cgaaattgga
      361 tacagtgaat agagcgttct tagggacaaa atttaaaacc ctgagattga attcagagat
      421 cgtagaggag agtttgaaat acctgttgga gcaaagatat ttttgtattt ctcctagggg
      481 atgaaaaatg gctgagctta gcatagtacc gagacgtccc gcacttttaa tgcatacaaa
      541 gctggaaggc cagaatcaat ccatactagt agtttcagac ttgcacatcg gttttgctca
      601 ttggtttcaa tcagagaacg tatctataga ttggtatcag attgcggaag agaccgaaaa
      661 ggaactcgaa aaaattgtga catcttgtaa agcaaattca attgttctgt taggtgatat
      721 aaaaaacaat gtatcaggaa tcaataaggg ggattggaaa gtagttccta aatttttgca
      781 gtccctctca cagatatgta aagtctattt tgttcctggt aatcatgaca gtaagatcag
      841 gttactcata cctgactcaa taagtacgat aggggttaca ggaatgacaa tcgatgatac
      901 cctgcttatt cacggtcata caatgccttc atcactgact tcaaacgtca aaaaggttat
      961 tcttggacat gttcatccag tattcttcaa atctgatagt gttatgaatg gtcaaaaagt
     1021 gtgggtgttt cttaggataa gaactgatgt tatatttcct agtaagaaag gatcgattga
     1081 tgttataata atgccatctt acaatagatt tatagtcaat cagtcaaaag ttagtagacg
     1141 aggccaaatc tcccctttag tagatcgtat actcaaaaag aaggccgtag aaaagtgtct
     1201 gatactatcc atggatggtg ctattcttgg aaacgaagag cttctggaga ccctcttctg
     1261 aaataacaaa ctttcttaaa actcgacgta gccagaaaga gaattgattg ttggcttaaa
     1321 ctttattcgc catcttaggc tctcaacgaa tgatgttgct gcttcaactg ttgttaggac
     1381 cgggatgccc atttccacgg cttttctcct aatttggtat tcatcgtata acatcccaac
     1441 atatttttca atagttgatg tagatggaat gtttatgata aaatcgattt cacggttata
     1501 gaggagatct gcaatattgg gttttcttga aggctcactt attttataaa cttcttcaac
     1561 atttgctttt gtattatttt ttataaattc ggccgtatgt tctgttgcaa ggattttgaa
     1621 tcccatggaa tttacgacgg agaggagtgg tagtaacttt tctttatatc gttgaccacc
     1681 taccgtaatt aacgcggaac ccgagagagg gagtgaataa cctgcagctt cataggcctt
     1741 agataacgca tcgtaaaaac tctccccaaa gcaagcgacc tctccagtag attgcatttc
     1801 tactccaagg acaacgtcag cgccttctaa ctgcatgaat gagaactgag gaaccttaat
     1861 tc
//
LOCUS       DATLQL010000627         1689 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2281398, whole genome shotgun sequence.
ACCESSION   DATLQL010000627 DATLQL010000000
VERSION     DATLQL010000627.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1689)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1689)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1689
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2281398"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            408..>1689
                     /locus_tag="VNB68_06305"
     CDS             408..>1689
                     /locus_tag="VNB68_06305"
                     /inference="COORDINATES: protein motif:HMM:TIGR01777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01777 family oxidoreductase"
                     /protein_id="HVD36995.1"
                     /translation="MQASSIFEPKTRGVFIKSTKIPATNKDAFDYHAREGALERLIPP
                     WSILTVTSHEGNIKDGAISTLKVRLWPISFKWTAAHFGYLQDRRFQDKMVKGPFQSWI
                     HTHSFIPDEIGQCIMEDKIAYSPPFGKLGPILLNNNIQNNLNQLFHYRHRILSNDINL
                     WKKARRSKGQKILITGSHGLIGSSLIPLLTAAGEHTITRLARPSSNRNNTNSHSIVWD
                     PSDDKVNVKELEGFDVVVHLAGENIFGRWTDSKKQRILESRIKSTRLLSDSLIKLANP
                     PSTLICASAIGFYGNQGNEVLTEESKPGFGFLSDVCRKWEESTETARDAGIRVVNTRF
                     GVVLTPKGGMLQKLLALSRFGLSLRLGDENQYISWVSIEDVIGSIFYSIINSSIRGPV
                     NVVSPNPVTNPEFSKTLARILKSKIMLPISQKLAR"
BASE COUNT          567 a          320 c          341 g          461 t
ORIGIN      
        1 tacattgtga gagttagaag aggcaaaaag catttgtaat atcagtcatt gacaagtcca
       61 tactatcaat gctatttaca tccctaaaca tgttttttat atattgtatt gacagagaac
      121 taattattga cctagatatt aaagcgcttt tctcttgtcc tttatctgcc agcataatgc
      181 ctaagtcaaa tctctttgtc tacagcaaat aggtcctaaa caatacacga caaatggtgt
      241 aagcgtgtgt ttcataacta aacgttattt gcgagatgat aattattgca aatacataat
      301 gataacgctc aatgtaactt acagctttga ggtttaaaag tactagtgct aactgataaa
      361 tatagagaca agattaaatt aattggatca tgctatctca tatgacaatg caggcatcat
      421 ccattttcga gccaaagaca agaggtgttt tcattaaaag tactaaaatt ccagcaacaa
      481 acaaagatgc ttttgactat catgcgaggg aaggcgcgct ggaacgactg atacctccct
      541 ggagtatttt aacagttaca agtcatgaag ggaatatcaa agatggggcc atatccacct
      601 tgaaggtcag attgtggcct atcagcttca aatggacggc tgcacatttt ggctatttac
      661 aagaccggcg gtttcaagac aagatggtaa aaggtccgtt tcaaagctgg atccataccc
      721 attcattcat acccgacgaa ataggccagt gtataatgga agacaagata gcatactcgc
      781 caccatttgg aaaattgggc cctatactgt tgaataacaa tatccaaaac aacctaaatc
      841 aattattcca ttatcggcat cgcatactaa gtaacgacat taatctctgg aaaaaagctc
      901 gaaggagcaa gggtcaaaag attctgataa caggctcaca tggtttgata ggatcttctc
      961 taattccact tcttaccgca gctggagaac acacgataac tcgattggca agaccttcgt
     1021 ctaatcgtaa caatacaaat tcgcattcaa tagtatggga ccctagtgat gacaaagtaa
     1081 atgttaagga gcttgaggga ttcgatgtag tcgttcatct agctggcgag aatatttttg
     1141 gcagatggac agattcaaaa aaacagagaa tactagagag tcgtataaag agcacaagat
     1201 tactaagcga ttccttaatc aaacttgcaa atccaccatc gacccttatt tgtgcctctg
     1261 caattggatt ttacggaaac caaggaaatg aagttcttac tgaagagagt aaaccgggtt
     1321 tcggatttct ttcagacgta tgccggaaat gggaagagtc aacagaaact gcaagggatg
     1381 ctggtataag agtcgtaaac acgaggtttg gagtagtttt gactccaaaa gggggcatgt
     1441 tacagaaact actcgcgcta tcaagatttg gcctaagtct gaggctggga gatgagaatc
     1501 agtatatcag ctgggtatca atagaggatg tgataggcag catcttttat tcgattatca
     1561 actcttcaat cagaggtcct gtcaacgttg tatctccaaa ccctgtcaca aacccagaat
     1621 tttcaaaaac acttgcgaga attttaaaga gcaagattat gcttccaata agccagaaac
     1681 ttgctagga
//
LOCUS       DATLQL010000628         2476 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1035972, whole genome shotgun sequence.
ACCESSION   DATLQL010000628 DATLQL010000000
VERSION     DATLQL010000628.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2476)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2476)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2476
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1035972"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            77..1465
                     /locus_tag="VNB68_06310"
     CDS             77..1465
                     /locus_tag="VNB68_06310"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HVD36996.1"
                     /translation="MSSYRKDIDSLGEVQVPVSAYYGPFTVRASLQYNATGQRSHINV
                     IKAFAMIKKSAALANKDLGVLEAHKADAIVKASDEILSGKLVDQFIIDAINSGAGTAV
                     NMNANEVIANRALEILNKKKGDYLTLSPNDHVNMSQSSNDTYPTAMHIAILLNLQEVK
                     TALTTLISSLEKKAEEFKEVIKIGRTHLMDAIPVTLGSEYSAYAFSLRKGLEKIDQSC
                     SELEYVALGGTAVGTGANAPSGYKELAVKYLAQTSGLNLKPSKNAFFSLQSKFEVAMC
                     SSTLRNVAIELSKIANDTRLMASGPVTGLAEILIPAVHAGSSIMPGKVNPSLSECLNM
                     ICFNIMGNDVSVAFAAQAGQFELNVMLPAMTRAVLDSTDMLKNFLPIYAKNMIDGIRA
                     NEQKLESYVQKSPMLVTLLNPFIGYMKASEVYKESLATNKSIRQIVLEKGLMTEEELN
                     KTLSKESILGTH"
     gene            1622..2020
                     /locus_tag="VNB68_06315"
     CDS             1622..2020
                     /locus_tag="VNB68_06315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD36997.1"
                     /translation="MAVSRLAITVGIGILVTVFVYFGLRDSLNHPSIIRTSIPPEMAL
                     NIVRNAFNISQADSVNLKTNYVYLKPNGEVYQLDSESNRIGDFLDKSEPTITGGSHYA
                     LQIKDTRDNKSYYVDSVTGEIVSSSNPHTK"
     gene            2088..>2476
                     /locus_tag="VNB68_06320"
     CDS             2088..>2476
                     /locus_tag="VNB68_06320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoglycerate dehydrogenase"
                     /protein_id="HVD36998.1"
                     /translation="MPNLMLVSGDVLICDSIDEAGVSVLKKSGMKVDYRPEITPDELL
                     ALAKNYDVIVVRSRTKITKPVIDSAAKVKIIARVGVGLDNIDTEYAESKGIRVINAAE
                     AAMNAVAELVIGDMIALARSIPKADSA"
BASE COUNT          802 a          442 c          531 g          701 t
ORIGIN      
        1 tagcagaagt aaaacatact tcatttgttg aacaaatgtc gattgattta ttaccattca
       61 tggtcctacg tttgtcatga gttcgtacag aaaggatatt gattcccttg gagaagttca
      121 agttcctgtt tctgcttatt acggtccatt cacagttcgc gcctctttgc aatataatgc
      181 aacagggcag cgttctcata ttaacgtgat aaaggctttt gcaatgatca aaaaatctgc
      241 cgcccttgcg aataaagatc ttggagtgct agaagcgcac aaagcagacg caatagtcaa
      301 agcttcagac gagattttgt ctggcaaact cgtggaccag tttatcattg acgccataaa
      361 tagtggcgct ggaacagctg tcaatatgaa tgccaacgaa gtaattgcca atagagccct
      421 ggaaattctt aataagaaaa agggagatta tctgacttta agcccaaatg atcatgtgaa
      481 tatgtcacaa tcaagcaatg atacgtatcc gactgctatg cacattgcaa tacttctaaa
      541 ccttcaagaa gttaaaactg ccttaacaac attaatttcg tcccttgaga agaaggctga
      601 ggaattcaag gaggtaataa aaataggaag aacgcatttg atggatgcga taccagtcac
      661 actcggttct gaatattcag cgtatgcctt ctctctcaga aagggattgg agaaaattga
      721 tcaatcatgt tcggagctag agtacgtagc acttggggga acggccgtag ggaccggtgc
      781 caacgcaccg agtgggtata aagaacttgc tgtgaaatac ctagcccaga catctggttt
      841 aaatttaaaa ccttcaaaaa atgcattctt ctcgcttcaa agcaagtttg aagttgccat
      901 gtgttcttca actctgagaa atgtcgcaat tgagttaagt aagattgcaa atgacacacg
      961 tttgatggcc tcaggacccg tcacgggcct tgccgaaatt ttaattcctg cagtacatgc
     1021 aggttcgtca ataatgcctg ggaaggtcaa tccatcgttg tcagaatgcc ttaacatgat
     1081 atgtttcaat atcatgggca atgatgtctc cgtggcattt gcagcacagg caggacagtt
     1141 tgaactaaac gtaatgttac cggcaatgac tagagcagta cttgattcta ctgatatgtt
     1201 aaagaatttc cttcccatat atgcaaagaa tatgattgat ggaataagag caaatgaaca
     1261 aaaactggaa tcttatgttc aaaaaagccc aatgcttgtt acccttctaa atcctttcat
     1321 aggatacatg aaggcttcag aggtatacaa agaatcttta gctacaaaca aaagcataag
     1381 gcaaattgtt ttagagaagg ggttgatgac tgaagaagaa ttgaacaaga ccttatctaa
     1441 agaaagtatt ttggggacgc attaaagtga attgatgacg aacaatttaa aaagagtgtt
     1501 tcttgtgtta gagagctaaa atgtattcga taacaatttc aggggcttac tttttttctt
     1561 ttcttctctc gcgacacaag ataaatgaaa gctaaccata atggtaaagt gaagatataa
     1621 catggcagta tcacgcttgg caattacagt gggcattggt attcttgtaa ctgtttttgt
     1681 ttattttggg ctgcgcgact ctctcaatca tccttcaatt attcgtactt ctattccacc
     1741 ggagatggct ctgaatatag ttagaaatgc atttaatatt tcacaggcag attcagttaa
     1801 tctaaagaca aattatgttt atttaaagcc taatggcgaa gtgtatcaac tggattctga
     1861 gtctaataga ataggagatt tcttggacaa atcggagccg acaataacag gtggaagtca
     1921 ttacgcattg cagattaaag atacccggga caacaagtcg tattacgttg actctgtaac
     1981 aggggagatt gtatcttcca gcaatcccca tacaaaataa agtcagaaga ataatcgata
     2041 ataaatgata gttcctggca gagcaatcaa attatatcac cgatactttg cctaacctta
     2101 tgctggttag tggggatgtt cttatctgtg attcaataga tgaggcgggt gtttcagttc
     2161 taaaaaaatc tgggatgaaa gttgactatc gaccggagat aactccagac gagttattag
     2221 cgttggctaa aaattatgat gtgatcgtag tgagaagtag gaccaaaata actaaaccag
     2281 ttatcgattc tgccgccaag gtaaaaataa tagccagagt aggtgtcggc ttggacaaca
     2341 tagatacaga gtatgcagaa tcaaagggta tcagagtaat taatgcagct gaagcagcta
     2401 tgaatgcagt tgctgaattg gtaattggag atatgattgc tttagctagg agcattccaa
     2461 aggctgactc tgcgtt
//
LOCUS       DATLQL010000629         1823 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2281505, whole genome shotgun sequence.
ACCESSION   DATLQL010000629 DATLQL010000000
VERSION     DATLQL010000629.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1823)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1823)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1823
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2281505"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..275)
                     /locus_tag="VNB68_06325"
     CDS             complement(<1..275)
                     /locus_tag="VNB68_06325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HVD36999.1"
                     /translation="MLLPAEIEAKSLIPAIRSILARKLINDYGLKEELVAKVLGVTQA
                     AISNYVRGTRGDVDLISKLGSVDHVIAMIDDIARDLAGNKAYTPYTMS"
     gene            complement(638..1705)
                     /locus_tag="VNB68_06330"
     CDS             complement(638..1705)
                     /locus_tag="VNB68_06330"
                     /inference="COORDINATES: protein motif:HMM:NF013528.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHHA1 domain-containing protein"
                     /protein_id="HVD37000.1"
                     /translation="MSIKDTPIVCISHKEDVDGIASAALLKAAFGNVSVILVDYANII
                     STLEKINLETSSSSPASTKNFRGKKMPKIFICDLGLNKKNEQRFMDILSKSISKGYNV
                     TYIDHHDLSEHASEGLIEMGVNLIHSIRECTSVQVYSKFKRRLKPDAAFYAAAGALTD
                     YLENGPRGSSLITKFDRQFLMLESSVLSYMISSKQHDNKFLGTIVDSLSSMKYPHEME
                     GGFSIAEKYAKKIVNGMNAIKKLIVETKEVAYVQGSAELSAAATVNFVLGASDRHVAM
                     VYKLKDDINSYVISIRGSKGCKVHLGRLVNDISSNMGGSGGGHDKAAGAVIPKENLME
                     FIEMLDRSVSDFAHSQHKDKR"
BASE COUNT          539 a          387 c          323 g          574 t
ORIGIN      
        1 gacattgtat aaggggtata agccttattg ccggccaaat ccctcgcaat atcgtcgatc
       61 atggcaataa cgtgatctac agagcctaac ttagatatta aatcaacatc tcctcttgtc
      121 ccccttacgt agttgctgat ggccgcctga gtgactccaa gcactttggc gacaagctct
      181 tccttcaagc catagtcatt tatcaacttt ctcgctagaa tagatctaat cgcagggatc
      241 agtgatttgg cttcaatctc cgcgggtaat aacatatccc tatgatttca aatccctcgg
      301 tttattatat aaagcttcgt tgccgtgatt tctaatgtat agcagtagat gcagtaaaca
      361 gtgtcacttt tgtagtcttt ttgatagctt agaattagct aaaactagat aagccaaaga
      421 tctcaaatac tcaagagcaa tggtcagcaa tccagcgatt gacgattgag ttgttcttat
      481 attactaaaa acgggcaaat acgttcttcg agcggttatc agagaataca aaagccgaca
      541 acaggttttc cgtcttgatc ttagaagtta ttgtatcact ctacatagat taaatgaaaa
      601 tatctgcgcc acttaacaag caggagcaga ctattagtca acgtttatct ttgtgttgcg
      661 aatgtgcaaa atcagaaaca gaccggtcca acatctctat aaactccatt aagttctcct
      721 ttggaataac tgcgccagcg gctttgtcgt gtcctccccc actgcctccc atatttgatg
      781 aaatatcatt tactagtctt ccaagatgaa ctttacagcc cttggatccc cgtattgata
      841 taacgtatga attgatatca tctttcaatt tgtaaaccat cgcaacgtgc ctatctgatg
      901 cacccaatac aaaattaacc gtagcggctg cagacagttc tgcgcttccc tgcacatagg
      961 ccacttcttt tgtttcgaca attaattttt tgatcgcatt catgccgttg actatttttt
     1021 ttgcgtattt ctcggctatt gagaagccac cctccatctc gtgtgggtat ttcatcgatg
     1081 aaagcgaatc cacaattgta cctagaaatt tattgtcatg ttgctttgaa gagatcatat
     1141 aggagagtac cgaggattca agcatcaaaa attgtctatc aaatttagtt ataagcgaag
     1201 atcctcgagg tccattttct agataatctg tgagagcgcc tgcggctgca taaaatgcag
     1261 cgtctggttt gagtcttctc ttgaactttg aatatacctg gacacttgta cactcccgaa
     1321 ttgaatgaat aaggttaact cccatttcaa ttaaaccttc agaagcgtgt tcgctcaagt
     1381 catgatgatc tatgtacgta acattatatc ccttagaaat actcttagaa agtatgtcca
     1441 tgaatctctg ctcatttttt ttattcaaac ccagatcaca gataaatatt ttgggcattt
     1501 tttttcctct gaagttttta gtagaagccg gtgatgatga tgatgtctct aaattaatct
     1561 tctctagcgt tgaaatgata ttggcgtagt caacaagaat aacagagaca tttccaaaag
     1621 ctgccttgag caacgcagca gaagcaatac cgtctacatc ctctttgtga gaaatgcaca
     1681 ctatgggtgt atcttttatt gacaacaaag atgaatccaa aactaacgat gacaatcttg
     1741 tataaatcat aaactcgtaa attttatagt attaaaatac tatgtacttg ttgtagcctt
     1801 taccctacga acctatgaag aca
//
LOCUS       DATLQL010000630         1117 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2105007, whole genome shotgun sequence.
ACCESSION   DATLQL010000630 DATLQL010000000
VERSION     DATLQL010000630.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1117)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1117)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1117
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2105007"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..875
                     /gene="guaA"
                     /locus_tag="VNB68_06335"
     CDS             <1..875
                     /gene="guaA"
                     /locus_tag="VNB68_06335"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003922 - GMP synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HVD37001.1"
                     /translation="SGGIDSTTVAALLQRAIGNNLRCVFVNHGLLREGEEDLVVRNFD
                     RHLGIRLIHINAEKQFLRKLKGIHDPEQKRKIIGEQFAVVFDNLAKKNGPFQWLAQGT
                     LYPDIIESGISKGPAAVIKTHHNVGGLPKWLKLKVIEPLESLYKDEVRRVARILEVPD
                     VLLRRHPFPGPGLAVRIIGEVSADKLRIAKHASKIIEDELSTAGFYENVWQAYAGVGD
                     DKAVGVLGDERVYGHIVIVRVVESIDAMTANWARLPHELIAKISNRITNEVEGVTWVT
                     YAVSSKPPSTIELQ"
BASE COUNT          353 a          182 c          266 g          316 t
ORIGIN      
        1 taagtggggg aattgattcg actactgttg cagctttact acaaagggcc atagggaata
       61 atttaaggtg cgtattcgta aaccacggat tgttgagaga aggtgaagaa gacttggttg
      121 tcagaaactt tgaccgtcac ctaggtataa gactaattca tattaacgcg gagaaacagt
      181 ttctacgaaa attgaaaggg attcatgatc ctgaacaaaa acggaaaatc ataggtgaac
      241 aatttgcggt cgtatttgat aacttggcta aaaaaaatgg tccatttcaa tggctcgcgc
      301 aaggaacact ttaccctgac atcatcgaaa gtggaatttc aaagggccca gcagcagtca
      361 tcaaaacaca tcataacgtg gggggtcttc caaaatggct taagttgaaa gtgattgaac
      421 cattggaaag tttgtataaa gacgaggtta gaagggtcgc aaggatatta gaagttccag
      481 atgtattgtt aagaagacat ccttttccag gaccaggtct ggctgttaga ataattgggg
      541 aagtgtcagc agataagcta cgaattgcaa aacacgccag caaaataatt gaagacgaat
      601 tgagtactgc tggattttat gaaaatgtat ggcaggctta tgctggagta ggagatgata
      661 aagctgttgg agtgttaggt gatgagcgtg tctacggcca tattgtaatt gtgagagtcg
      721 tagagtctat tgacgcaatg accgcaaatt gggctagatt acctcatgag ttgattgcga
      781 agattagtaa tagaatcacc aacgaagtag aaggagtaac ttgggtcacc tatgcggttt
      841 caagcaaacc accatctacg atagagcttc aatagtaact gggtatagtc tgaaatcatg
      901 aatttcaatc atacaatttt atgaggtttc tattggtcgt gacatggaat tttatgttac
      961 tttataaacc ctttgtacat tcatggtcct gcagatattt caattatgcc agctttctac
     1021 tctttgtggg ttggtggcat gactgctttt agtaaacagg tggtgagaag aatttgtaaa
     1081 atcgactttg cagtccactt catcactcca tcgatca
//
LOCUS       DATLQL010000631         1032 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2281729, whole genome shotgun sequence.
ACCESSION   DATLQL010000631 DATLQL010000000
VERSION     DATLQL010000631.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1032)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1032)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1032
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2281729"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..914
                     /locus_tag="VNB68_06340"
     CDS             <1..914
                     /locus_tag="VNB68_06340"
                     /inference="COORDINATES: protein motif:HMM:NF019351.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="plastocyanin/azurin family copper-binding
                     protein"
                     /protein_id="HVD37002.1"
                     /translation="VDGEYDTKNQLIPLPEYYMFNGYAMQYQTHPLPARTNETVRIYL
                     VNLGLSPAYGMHIHGTSFKAYPSGIWENSPLIVQSWELASGNAAILEMKWPWPGKFTF
                     HFHGIPEERGAMGYFNVTNPAVNAVDGKDVASTKSISMIDWQANLTKSLQRENPNGNV
                     TTTSTTTEAANNNNAMNEMEKHHQQVPPSSSQLSTSTTKVSIVKGATILGDKAFMPNH
                     LRIKLGTTVTWTNNDSNLHTVTSGTPNSANAGEAFDSGLTALIMPAKIYSHKFTNIGE
                     FPYFCRLHPTMVGKIDVVPAANITDTG"
BASE COUNT          354 a          200 c          192 g          286 t
ORIGIN      
        1 ttgtcgatgg agaatacgac acaaagaatc aactaattcc attaccagaa tactatatgt
       61 ttaacggcta tgcaatgcaa taccaaaccc atccccttcc tgccagaacc aatgagactg
      121 ttagaattta ccttgtaaac ctaggtcttt ctccagctta tggtatgcac attcatggta
      181 catcgttcaa agcatatcct tctgggatat gggagaattc tccacttata gtacagtcat
      241 gggaattagc atcaggtaat gctgccatat tggagatgaa atggccatgg cctggtaaat
      301 tcacgtttca tttccatggg atccctgaag agagaggagc aatgggatac tttaatgtga
      361 caaacccagc cgtaaatgca gtggatggaa aggatgtagc cagtacaaaa tctataagta
      421 tgatagactg gcaggccaat ttaacaaaga gcttacaaag agaaaatcca aatggaaatg
      481 taactactac ttctactacc actgaagctg caaataataa taatgcaatg aatgaaatgg
      541 aaaaacacca ccaacaagta cccccctcct cttctcaact ttccactagt acaactaaag
      601 tctcaatagt aaagggagca actatccttg gagataaggc attcatgccg aatcatctta
      661 ggattaagct tggaactact gttacttgga ctaacaacga cagtaattta catactgtta
      721 cctcaggtac acctaattcc gcgaacgcag gggaagcatt tgattcaggt ttaacagcgc
      781 tcataatgcc cgctaaaata tattcacata aatttacaaa tataggcgag tttccttatt
      841 tttgtagatt acatcctaca atggtaggaa agattgatgt ggttcccgct gctaatatta
      901 ctgatactgg atagagatat gcccatataa taaataagat gcaatagatg ggaattatag
      961 attagtaata ataatgtaaa acttttgcaa tgctttgcat tgaagagcag actttgttat
     1021 taattatcga ta
//
LOCUS       DATLQL010000632         1587 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_148392, whole genome shotgun sequence.
ACCESSION   DATLQL010000632 DATLQL010000000
VERSION     DATLQL010000632.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1587)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1587)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1587
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148392"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(193..1431)
                     /locus_tag="VNB68_06345"
     CDS             complement(193..1431)
                     /locus_tag="VNB68_06345"
                     /inference="COORDINATES: protein motif:HMM:NF012377.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cellulase family glycosylhydrolase"
                     /protein_id="HVD37003.1"
                     /translation="MNTTYAKSKDKPDKDTVNSNKGHDGITHESGPHLGLNMKGYYTG
                     LPQSREGFKNPYPSNYYASSFKAFSKAKIIDHVRYRVYWESYVKNPIEFIKELKHVAK
                     LADRYGIKVIYDNHQFHTSSWLDVGSGTGFPAYLFNDAVLYKQDSGGIPKSAAAKAWW
                     TNWWNRAIESVNGTDGWRLQAEFLKKIVKTVDKHPSTLGYEILSEPQVHNKNQWTKIG
                     KYNTFMTKELRKLTDKTLIYSMNIPIDLKSPIQVNAENLAKMSPNNKQNIVFKFSLYG
                     IPKDGYQSDKLQLFENASRIAGVPLYVGEWNNVKRVATTFEGKRSFEISAKQSDISQT
                     DANTILQKFKGIGIWGMAYWSWSFLPEKTPNFNLVKFVYDKATGEGKMKITKYFGIME
                     NAYQEVFGKSSHDIIKGPKK"
BASE COUNT          414 a          323 c          273 g          577 t
ORIGIN      
        1 gatcttgata gtgactctgt attgtaatat tgccacaatt aacaacggca aagatattct
       61 tgattttttt ctaatctttc gcatctcgtc aataaagacg cagaacccgt taggtgcttt
      121 tgaaccaatg cagattaagt cacaaaacat taaacatctc tgcgtcattc ccttttctat
      181 tagagagcag cattatttct taggcccttt gattatatca tgagatgact ttccaaacac
      241 ttcttggtat gcattttcca taataccaaa atatttagta atcttcattt ttccttctcc
      301 ggttgcttta tcatacacga acttgacgag attaaagttt ggagtttttt caggtaaaaa
      361 actccaactc caataagcca ttccccatat gccaattccc ttgaatttct ggagtatggt
      421 gtttgcatca gtctggctaa tatcgctctg cttggcgctg atctcaaaag accttttgcc
      481 ttcaaaagtc gtggcaactc gtttcacatt attccattcc cctacgtaaa gtggtactcc
      541 agctatccta cttgcatttt caaataattg aagcttatcg ctttgataac catccttagg
      601 aatcccgtaa agtgaaaatt tgaatactat attttgtttg ttgtttggag acatctttgc
      661 cagattttct gcattgactt gtattggact ttttaggtct attggaatat tcatactgta
      721 gattaacgtc ttgtctgtaa gtttacggag ttctttggtc atgaaggtat tgtacttgcc
      781 aatttttgtc cattgatttt tattatgaac ttgtggttcg ctcaaaattt cataacccaa
      841 tgtacttggg tgtttgtcaa ctgtctttac gatcttcttc aagaattctg cttgcagacg
      901 ccatccatct gtcccgttaa cgctctcaat tgccctgttc caccaattgg tccaccatgc
      961 ctttgcagcc gcagattttg gtattcctcc gctgtcttgt ttgtaaagta ccgcatcgtt
     1021 gaacaagtat gccggaaacc ctgtgccact gccaacatct aaccacgagg aggtgtggaa
     1081 ttgatgattg tcatatatta ctttgattcc atatctgtct gctaactttg caacgtgttt
     1141 taattctttt atgaattcta ttggattttt gacgtatgat tcccaataca ccctgtagcg
     1201 aacatggtca ataatttttg ctttcgaaaa tgccttgaaa ctacttgcat aatagttact
     1261 tggataggga tttttgaaac cttctctgga ctggggcaaa cctgtataat agcctttcat
     1321 gtttaagcca agatgaggtc cagactcgtg agtaattcca tcatgtcctt tgttactgtt
     1381 cacagtatcc ttatctggtt tgtcttttga ctttgcatat gttgtattca tgatgatatt
     1441 attaagaaag caactgctta cgacaagtat ggtcgcgata aaaataaagg aaattgtttt
     1501 agtatgtcta tatcgtgcag ataaattgtt tgggttaaac actcgcaaca ctctacttca
     1561 tcttgaatat attccattct gactgac
//
LOCUS       DATLQL010000633         1386 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_861998, whole genome shotgun sequence.
ACCESSION   DATLQL010000633 DATLQL010000000
VERSION     DATLQL010000633.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1386)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1386)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1386
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_861998"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(109..>1386)
                     /locus_tag="VNB68_06350"
     CDS             complement(109..>1386)
                     /locus_tag="VNB68_06350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lhr helicase"
                     /protein_id="HVD37004.1"
                     /translation="IGEFGEKGNVFVLKGSQWRIINVNENKMQVHVEQIHGSPINIPH
                     WIGEMIPVDFETAREVGEVRKQILKDTKTAIMPDYSNILKSIAIVPDSKNIVIESVAN
                     KNTVVVHCTFGSKVNNTLASLLSTIISSQTGYFVETKSDPYRIMLSSSARFGKNHIEN
                     IFREDYDVGAVLIASLTGTYNLNWRVWNVAKKFGIVDKAATYDKRIARIIYDRYSKTP
                     LSEESLRELIHDKYDISLTNSVMSDVRNDHIKIHWYDLNEFTPLAAPITDHNSKFTSS
                     PLNIERGIIELVKERLENTKHRLICIRCGKWERLIETKQVAGILSCNLCGSRLITATF
                     SSDYELPKIILNKLSGASITPEENHKFERAWKVASLINNFGEKALLVLSGYGVGVDTA
                     ARILRNYVDDENVFKSIYNAERQYVTTRAFWKD"
BASE COUNT          391 a          285 c          244 g          466 t
ORIGIN      
        1 gaaaccttat atgcttatga acccagaatg caacctatgc tcctataatg agatttcctc
       61 gtgaacttga taatagcaat ataaagtaag actatgccat gatacagatt agtccttcca
      121 aaaggctctg gtagttacat actgtctctc ggcattgtat atgctcttga agacattctc
      181 atcgtctaca taattgcgta gtattcgagc ggctgtatcg actccgacac catacccgga
      241 taataccaaa agtgcttttt caccaaaatt gtttataaga gatgctactt tccatgcgcg
      301 ctcgaatttg tgattttctt ctggagttat gcttgcccca ctcaatttat tcaagattat
      361 tttaggcaat tcataatctg atgagaaagt tgcagttatt aatcttgatc cacataaatt
      421 gcaggataaa atccctgcaa cctgcttagt ctcaattaaa cgttcccact tcccacatct
      481 gatgcatatt agtctgtgtt tagtgttctc aagtctttcc ttgacgagtt caatgatgcc
      541 gcgttcaata ttaagtggtg acgaggtgaa tttcgaattg tggtcggtta ttggggcagc
      601 caatggagtg aattcgttta gatcatacca atgaattttg atatgatcgt tacgcacatc
      661 actcattact gaattcgtaa gagaaatatc atatttgtcg tgaattaact cgcgaagaga
      721 ttcctcgctt agcggtgtct ttgaatacct gtcataaatt atacgtgcaa ttctcttatc
      781 ataggtagcc gccttgtcca caattccgaa tttctttgca acattccaga cacgccaatt
      841 tagattgtag gttcctgtca aagaagcgat caggactgca cctacatcgt agtcctctct
      901 aaaaatattc tctatgtgat tcttgccaaa tctagcacta gaactgagca ttattctgta
      961 gggatcagac tttgtttcaa caaagtatcc agtctgggaa gaaattattg ttgacaaaag
     1021 ggatgcaagt gtattattaa ctttacttcc aaaagtacag tgcacaacaa cagtattttt
     1081 gttggcaaca ctttctataa ctatgttctt ggaatcagga acgatagcga tactttttaa
     1141 tatgttacta tagtcgggca tgatagccgt ttttgtatct tttaaaatct gcttacgtac
     1201 ttccccaact tcccttgcgg tttcaaagtc tacaggtatc atctcaccta tccagtgagg
     1261 aatatttata ggtgatccat gaatttgttc cacgtgaact tgcattttgt tttcgtttac
     1321 attgatgata cgccattgtg aacccttaag cacaaagaca tttccttttt ctccaaattc
     1381 tcctat
//
LOCUS       DATLQL010000634         1227 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1197031, whole genome shotgun sequence.
ACCESSION   DATLQL010000634 DATLQL010000000
VERSION     DATLQL010000634.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1227)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1227)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1227
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1197031"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1227
                     /locus_tag="VNB68_06355"
     CDS             <1..>1227
                     /locus_tag="VNB68_06355"
                     /inference="COORDINATES: protein motif:HMM:NF015089.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HVD37005.1"
                     /translation="NDKYRKYITEWANLLNQPIPSMKRIAVDIEVDSEEGRIPNPREH
                     DRKITAVGLVSSDGLKKVLILQKDDSREDNSMLTPAVEICKTEKELLQKAFSIIWSYP
                     IVLTFNGDDFDLPYLYSRAQDSRIDPDSNSTIPKEEIPILIKRESFIKKGIQADPVQL
                     KHGIHIDLFRTFQNRSIQIYAFSHKYSEFRLGAISEALLNDGKIDFDGNISELSTEKL
                     AEYCLKDADLTFRLTSFNDDLLMKLLVAIARISRLSIEDVSRFGVNQWIRGMLYFEHR
                     KINALIPRRDELLTKGQASTTAIIKEKKYRGGLVVEPTAGIHFNVVVVDFASLYPSII
                     KVHNLSYETVNCPHLECQNDPAQNIPNTNHWICKKRRGITSLLIGSLRDLRVGYYKQL
                     SKDKSLAYDERQLYVVV"
BASE COUNT          405 a          230 c          256 g          336 t
ORIGIN      
        1 caacgacaag tacagaaaat acattaccga atgggcgaat ctacttaatc aacccatacc
       61 aagtatgaag cgtattgcag tcgacattga agtagattca gaggaaggca ggattcctaa
      121 tccgagggaa catgacagaa agattactgc cgtcggatta gtatcaagtg atggtctgaa
      181 gaaggtgcta attttacaaa aggatgattc tcgtgaagat aatagtatgc tgacgcccgc
      241 ggtagagata tgtaaaacag agaaggaact actacaaaaa gcattcagta ttatttggtc
      301 gtatccaatt gtattaacat ttaatggaga tgactttgac ctgccttatc tgtactcccg
      361 agcacaagat tccagaattg atcctgattc taattctacg atacccaaag aagaaatacc
      421 gattttgatc aaacgtgaat cattcataaa aaaaggtatt caagcggatc ctgtgcaact
      481 caaacatggt atacatatag acctcttcag gacgtttcag aacagatcca ttcaaattta
      541 tgcgttcagc cataaatatt cggagttcag acttggggca atttctgaag cgcttttgaa
      601 cgatggcaaa atcgatttcg atggaaacat aagtgagctc tcgactgaga aattggctga
      661 atattgtcta aaagatgctg acctgacatt taggctcacc agcttcaatg atgatcttct
      721 catgaaactt ctagttgcaa tcgcgagaat ctccagatta tccatagaag acgtttcacg
      781 atttggtgtg aatcaatgga tacggggtat gttgtatttt gagcatagga agattaatgc
      841 acttatcccc cgtcgcgatg aacttttgac gaaggggcag gcttctacga cggcaataat
      901 caaagaaaaa aaatatcgtg gcggccttgt cgttgaacca actgcaggga tacactttaa
      961 tgttgtagtg gtcgacttcg cgagtcttta ccctagtata ataaaagttc acaacctgtc
     1021 atacgaaact gtaaattgtc ctcatttgga atgtcagaat gatcctgccc aaaatatacc
     1081 taacactaat cattggatct gcaaaaaaag gagaggcatt acatctctat tgataggatc
     1141 attacgagat ctacgagttg ggtattacaa acaactatca aaagataagt ctctcgctta
     1201 tgatgagagg cagctatatg ttgtagt
//
LOCUS       DATLQL010000635         1660 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1198005, whole genome shotgun sequence.
ACCESSION   DATLQL010000635 DATLQL010000000
VERSION     DATLQL010000635.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1660)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1660)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1660
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1198005"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            23..>1660
                     /locus_tag="VNB68_06360"
     CDS             23..>1660
                     /locus_tag="VNB68_06360"
                     /inference="COORDINATES: protein motif:HMM:NF012861.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005247 - voltage-gated chloride channel
                     activity [Evidence IEA];
                     GO_process: GO:0006821 - chloride transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HVD37006.1"
                     /translation="MKWNLDFSYFRKWILIGFLLGVVAGLGAVALFLSVEFFTGLFLG
                     IGAGYFPQLPGGFQNNFTYTLTIERPWLLPLITGLGGLLVGLITTKFSPESEGHGTDA
                     VIDAYHHKSGHIRARVPLVKGVASSITIGSGGSGGTEGPAGQIAAGFGSLIGKLFKLN
                     EDERRIAVAAGLGAGIGSIFKVPLGGAVFSAEVFYRRDFEVRALIPGLVASVTGYTVF
                     GFVFGWDRLFTIPLDLVRYTNPVSLILYAIVGLASAGLSVGYVKTFYAISDYFSRIHI
                     PKYLKPAIGGVLVGVIGIAFPQVLGTSYGWLQIVINKDYVLFPLVMIGPVIILKILAT
                     SLTIGSGGSAGVFGPSMVIGGLLGAFIGTAFHLLGLFTWIDVSSVIIVSMVSFFGATA
                     KTPISSIIMGSELTGGYALLAPMMLATFIAYIMSGRHNSIFRNQVLNRSDSPAHRMEY
                     QRVILSDLYVKDVMKNPMNKLSKNLSIEEALQILNRNNSRMIMVVNENDKLEGVVYRY
                     KLFEFPEEYRKSTKLENIMIKDPFFAYTSDSLHHALIR"
BASE COUNT          477 a          287 c          375 g          521 t
ORIGIN      
        1 aattgcgaga acattaagag gtatgaaatg gaatttagat tttagctact ttagaaagtg
       61 gatactcata gggtttctgt taggagtcgt agcgggattg ggggctgtag ccctatttct
      121 ttcagttgaa ttttttactg gtctattcct agggatagga gcaggttatt tcccccagtt
      181 gccaggaggt tttcaaaata actttacata tactctgact atcgaaagac catggttgct
      241 accattgata acgggtctgg gaggtctttt agttggatta atcaccacga aattctctcc
      301 cgagtctgag ggacacggaa cagatgcagt aatcgatgca tatcatcaca aaagcggaca
      361 tattagggca agagttccct tagtgaaagg ggtagcttca tctatcacta taggaagtgg
      421 tggaagcgga ggcactgaag gacctgccgg acagatagct gccggtttcg gatcactcat
      481 aggcaagctt ttcaaattga atgaagatga aagaagaatc gcagtcgctg caggccttgg
      541 agcgggtatc ggcagtatat tcaaggtccc tctaggtgga gctgtcttca gtgcggaggt
      601 tttttataga agagattttg aggtaagagc cttaatacct ggattggtag catccgtaac
      661 tggttatact gtttttggat tcgtcttcgg gtgggatcgc ttgtttacca ttcctcttga
      721 tcttgtaaga tacacaaacc cggtatcact cattctttat gcgatagttg gtctggcttc
      781 tgctggatta agtgtaggat acgtaaagac tttctatgca atatctgatt atttcagcag
      841 aattcatatt ccaaaatatt taaaaccagc tattggaggc gtgctggtag gagtgatagg
      901 aattgcattt ccccaagtat tgggaacttc atacgggtgg ttacaaatag tgattaacaa
      961 ggattatgtc ctatttccac tggtcatgat cggacctgta ataatactca agattttggc
     1021 gacctctttg acaataggtt ctggtggaag tgctggcgtt tttggtcctt ctatggtaat
     1081 aggaggccta ttaggtgcat ttataggtac agcttttcac ttattaggat tatttacatg
     1141 gatagacgtt tcgtctgtaa tcatagtctc aatggtttca tttttcggtg ctacagcaaa
     1201 aacaccaata tcatcaatta ttatgggtag tgagttaaca ggaggttatg ctcttctagc
     1261 accaatgatg ctcgccactt ttatcgcata cataatgtcg ggacggcata attcaatttt
     1321 ccggaaccaa gttcttaata ggtctgattc acctgcccac agaatggagt atcaacgtgt
     1381 catactgagc gatctttatg taaaagacgt tatgaaaaat ccaatgaata aactttcaaa
     1441 aaatctgtct atagaagagg cacttcaaat attgaaccga aataacagta gaatgattat
     1501 ggtagttaat gaaaatgata aacttgaggg tgttgtatat agatacaaac tttttgagtt
     1561 ccctgaagaa tatcgcaagt ctactaaatt agaaaatatt atgataaaag atccattttt
     1621 tgcttacaca tctgattctc ttcaccatgc gttaattaga
//
LOCUS       DATLQL010000636         1091 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2283363, whole genome shotgun sequence.
ACCESSION   DATLQL010000636 DATLQL010000000
VERSION     DATLQL010000636.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1091)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1091)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1091
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2283363"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..529)
                     /locus_tag="VNB68_06365"
     CDS             complement(<1..529)
                     /locus_tag="VNB68_06365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37007.1"
                     /translation="MSSKDNRINEWFVHKFGPIGFRIFVGMLFLPYTGMCISFAVLGS
                     LLPDQVSWERVCAISVIYALGLGLGAHAADSLGSRKVKPWGNYFSKRQLWLITLTSLS
                     CAYSIGIYYIIHFTPILGIIAILEGFFVFAYNFEMFKGLFHNDVSFSVSWGVLPVIAG
                     CVIQTNNIELLPLGIS"
     gene            complement(526..>1091)
                     /locus_tag="VNB68_06370"
     CDS             complement(526..>1091)
                     /locus_tag="VNB68_06370"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HVD37008.1"
                     /translation="VDSGNFISANILDLAAGTGILSSMLEGRSSKAVIHSLDLTLDYL
                     RLAKKKSQRLYLVNSTAELLPFRAETFDSVVSSYLAKYVNIHRVVQESWRVLKHTGIV
                     VFHDFAYPTNSVTEKFWKFYFSLLKFSGKIIRGWAPTFQRLDELIRKTHCWPEDIIEC
                     LKKSGFVEVICKYYSLGTSAIISARKK"
BASE COUNT          358 a          235 c          198 g          300 t
ORIGIN      
        1 cagatatccc tagagggagt agttcaatat tattagtctg tatgacacat cctgcaataa
       61 caggtagtac gccccacgac actgaaaacg aaacgtcgtt gtgaaatagt cctttgaaca
      121 tttcaaaatt atatgcaaag acgaagaacc cttccagtat ggcgattatc cctaagatag
      181 gagtaaaatg gataatataa taaattccaa tagagtaagc acaggataga ctcgtcaaag
      241 ttatgagcca aagctgtcgc ttggaaaaat aatttcccca tggcttaact ttccttgaac
      301 ccaaactatc agctgcatga gcccctaaac caagccccag tgcatatatc acggatatag
      361 cacaaaccct ttcccatgat acttgatctg gtaacagtga gcctaatacc gcaaaggaga
      421 tacacattcc agtataaggt agaaatagca tccccacaaa tatcctaaat cctattggac
      481 cgaacttatg tacgaaccat tcgtttatgc gattatcttt gctactcatt tttttctcgc
      541 agagataata gcacttgttc ctaaactata atatttgcaa attacttcga caaacccaga
      601 ctttttaagg cattcaataa tatcctcagg ccagcaatgg gttttgcgga tcagctcatc
      661 caatctttgg aatgttggag cccacccgcg gattatcttg cccgagaact ttaacaggga
      721 gaaatagaat ttccaaaatt tttcagttac agaattggtg ggataggcaa agtcatgaaa
      781 aactacaatc cctgtatgct tgagaactcg ccaagactcc tgcacgactc tatgaatatt
      841 gacatacttt gctagatagg aagatacgac tgaatcaaat gtttctgctc tgaatggtaa
      901 tagctctgca gttgaattta ctaaataaag cctttgggat tttttctttg ctagcctaag
      961 atagtctagt gtaagatcca aagaatggat aactgcctta gatgatctcc cctcaagcat
     1021 cgaggataat atgcctgtcc ccgcagcaag atcaaggata tttgcggaaa taaaattacc
     1081 gctatcgaca a
//
LOCUS       DATLQL010000637         3361 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2283421, whole genome shotgun sequence.
ACCESSION   DATLQL010000637 DATLQL010000000
VERSION     DATLQL010000637.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3361)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3361)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3361
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2283421"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            56..2176
                     /locus_tag="VNB68_06375"
     CDS             56..2176
                     /locus_tag="VNB68_06375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HVD37009.1"
                     /translation="MRSQLRDLLGLLGYSSLYPPQEHAVSKGLMDGKNMLITTPTASG
                     KTLMGLMGAIRALEGGKKVIYLTPLRALAAEKFIDFKTLQRMQFNDRRKIRVGISTGD
                     YDSSGSELEDTDIVILTNEKLDSIMRHGINWLDRVGVFIIDEVHLLGDRERGPTLEIM
                     LTKIKERYPKAQIIALSATISNSDEVGRWLGCEIIESEWRPTRLVEGIYDYGKVRMND
                     DVTFEIERSGSSSSAPIDLALQSVKDGGQALIFAETRRRAVSLAGKAAEQISKLFNES
                     SKNLAKRTALQIRDSADAEINKTLSALVAKGVAFHHAGLGPKVRQIVENAFRTGVIKL
                     VTATPTLGAGVNLPARRVIIASIFRYDQNYGGNVPISILEYKQLCGRAGRPAYDKFGE
                     SILITDSRIDSSEVYDHYVLGSPEPLQSHLMNERSLRIHLLGTIATTLKINKSRLYEL
                     FNNTFFAQHHDQTSINSKLHSVLEYLEEEGLIISKSDHLTATKFGKRTALLYVDPQTA
                     VQFRKNIKSVEVFYSDNIGHILKWIVESNDFYPKLSLRIKDIQHVSALFTSDEWNLYQ
                     YFIESSNSRSLVALLKWVNEASDTILADNIGVEPGDMYRMVETAEWLLYSLGEIARII
                     GRVDIVHEINILKLRVKFGINTELIPLIQFEGVGRIRARALYNGGIVNVEKLAETSES
                     KLAAISKVGPVLARKLKHQVSRQK"
     gene            complement(2313..3284)
                     /locus_tag="VNB68_06380"
     CDS             complement(2313..3284)
                     /locus_tag="VNB68_06380"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008465 - glycerate dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycerate dehydrogenase"
                     /protein_id="HVD37010.1"
                     /translation="MLYKPVVYVTRSLPEPGPTLLSKYCHIDMNYSVIPISKRQMIEK
                     AKEVDAIVCMLGDKIDSEVIYSAGNRLKLISCYSAGYDHVDLEAATNMKIVVTNTPDI
                     LSETTADLTFALIFAVSRNVVKGDYYVKNAKWKFGWTPDLFLGTDVYGKVLGIIGLGN
                     IGTKVARRAKGFEMDVIYHNRTRKYELESKFGLRYVDFHELLRRSDFISIHVDLNKDT
                     YHMISSDELKKMKNTAFLINTARGKVVKEKDLVHALNKGLIAGAGLDVYEEEPVSRES
                     PLLKTSNAVLLPHLGSATQETRSRMAEMAAMNVINFFRQIGPVHRVN"
BASE COUNT         1084 a          626 c          673 g          978 t
ORIGIN      
        1 taacagtttg atcatgtcat ggtaaaaata tgagaacttc tattaaaatg ggcacatgcg
       61 atctcaactt agggatcttc tcggcttatt aggttattca tcgctttatc cccctcagga
      121 acatgctgtg tcaaaaggat taatggatgg aaagaatatg ctaattacga cacctacagc
      181 aagcgggaag acgctcatgg gattaatggg tgctatcagg gcattagagg gagggaaaaa
      241 ggtaatttac cttacaccat taagagcact ggcagctgaa aaattcatag atttcaaaac
      301 tctgcagaga atgcaattta acgatcgtag gaaaatacgt gtaggcattt caactggtga
      361 ttatgattct tctggatccg aattagaaga tacggatatc gtgatactca caaacgaaaa
      421 actggattca attatgcgtc atggaataaa ttggctggat agagttggag tatttattat
      481 cgacgaagtt catcttctag gagaccgcga acgggggcct actcttgaaa ttatgttgac
      541 aaagataaaa gagagatatc cgaaggcgca aataattgct ctgagtgcca ccatctcaaa
      601 ttcagatgaa gttggcagat ggttaggatg cgaaattatt gaaagtgagt ggaggccaac
      661 cagattggta gaaggaatat atgactatgg taaagttcgg atgaatgatg acgttacttt
      721 tgaaatagaa cgaagtggaa gttcaagctc ggccccgata gatctggcac tccagtctgt
      781 gaaggatggt gggcaagccc ttattttcgc agaaacaaga aggcgtgccg tatctcttgc
      841 cggtaaggct gccgaacaaa tctcgaaatt atttaacgaa tcctcaaaga acctagcgaa
      901 acgaactgca ttacaaatac gagatagtgc agatgctgag attaacaaga cactttcagc
      961 gctagttgca aagggagtgg catttcatca cgctggattg ggacctaagg tcagacaaat
     1021 tgtagagaat gcgtttagga cgggtgttat aaaacttgtt accgcaacac ctacgctagg
     1081 ggcaggggtg aacttaccag cgagaagagt gataattgca agtatttttc ggtatgatca
     1141 aaattacggg ggaaatgttc ctattagcat cttggaatac aaacagctgt gcggccgtgc
     1201 gggaaggcca gcatatgata aatttggaga gtccatactt attaccgatt caagaatcga
     1261 ctcatcagag gtttacgacc attatgtatt gggcagtccc gaaccacttc aatctcactt
     1321 gatgaacgag aggtctttga gaatacattt gttaggtacc atcgctacaa cactaaaaat
     1381 taacaaatct cgactgtatg aattattcaa taataccttt tttgctcagc atcatgatca
     1441 aacgagtatt aattcgaagc ttcactctgt attagaatac ctagaagagg aaggcttaat
     1501 catttcaaaa agtgatcatt tgactgctac taaattcggt aagagaacgg cacttcttta
     1561 tgttgatcca caaacagcag tgcaatttag aaaaaatata aaatcggtag aagtttttta
     1621 ttcagacaat ataggtcata tcttgaaatg gatcgttgaa tcaaacgact tttatccaaa
     1681 attgtcattg agaatcaagg atatccaaca tgttagcgct ctttttacct cggatgagtg
     1741 gaatctgtat caatatttta ttgaaagttc taactcaaga agtctggtag cactcctaaa
     1801 atgggtgaat gaagcaagcg acacaatact agctgataat atcggagtag agccgggtga
     1861 tatgtacaga atggtcgaaa ctgccgaatg gttgctctat agtttaggtg aaattgctag
     1921 gattattgga cgagtagaca ttgtacatga aatcaatata ctcaaactaa gagtaaagtt
     1981 tgggataaat acagaattaa tccctcttat tcaatttgaa ggagttggaa gaataagagc
     2041 aagagcatta tataacgggg gtatcgtaaa tgtcgaaaaa cttgcagaaa cttcagaatc
     2101 caagttagca gctatttcaa aagtcggccc tgtacttgct agaaaactaa agcaccaggt
     2161 aagtcgacag aaataatagt tctatttcac tatactacat ttctaaatga ggtctgacaa
     2221 atttctttgc atctcaaagt gtatggtatg gctcgacagc tttttggtcc ttgttagggt
     2281 agattcagag caaatgataa tcaccaatga atctaattga ctctgtggac tggtccaatt
     2341 tgtctgaaaa aatttatgac attcattgct gccatttctg ccattctaga tcgtgtttcc
     2401 tgggtggcac tacctagatg cggtaacaat acagcgtttg atgtctttaa taggggactt
     2461 tctctagaaa caggctcttc ctcatataca tccaatccag cacctgcaat caacccttta
     2521 ttcagagcat gaactaaatc tttctcctta accaccttcc ctctggcagt attgattaga
     2581 aatgcagtgt tcttcatctt cttcaattca tccgaggaga tcatatgata agtatccttg
     2641 ttcaggtcaa catgtatcga tataaaatca cttctccgga gtaattcatg aaagtcaaca
     2701 tagcgtaacc caaatttcga ttcaagttcg tactttcgag ttctattatg atatattaca
     2761 tccatctcga aaccttttgc acgtcttgca accttcgtac caatattacc aagaccaatt
     2821 attcccaaaa ctttgccata aacatcggta cctagaaata gatcaggcgt ccacccaaat
     2881 ttccatttgg cattcttgac atagtaatca cctttgacaa catttcttga aaccgcaaaa
     2941 attaatgcaa atgtcaaatc agctgtcgtt tcagataaaa tatctggcgt attggtaaca
     3001 acaatcttca tatttgtggc tgcttctaaa tcaacatgat catatccagc actataacag
     3061 ctaattagtt taagtctatt tcctgccgaa tatataacct cagaatctat tttatctcct
     3121 aacatgcaaa caatcgcatc aacttctttc gctttctcta tcatttgtct tttagagata
     3181 ggtatcacgc tgtaattcat atcgatatga cagtatttag aaagcagagt aggaccaggt
     3241 tccggtaagc ttctagttac gtacactacg ggcttgtata acattcaacc tctggttagt
     3301 aaatttcttt aaccattaaa ctttttgata aaaaggtatg ggcacaggaa atatgtacag
     3361 t
//
LOCUS       DATLQL010000638         1106 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_863465, whole genome shotgun sequence.
ACCESSION   DATLQL010000638 DATLQL010000000
VERSION     DATLQL010000638.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1106)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1106)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1106
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_863465"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            99..>1106
                     /locus_tag="VNB68_06385"
     CDS             99..>1106
                     /locus_tag="VNB68_06385"
                     /inference="COORDINATES: protein motif:HMM:NF014011.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003896 - DNA primase activity [Evidence
                     IEA];
                     GO_process: GO:0006269 - DNA replication, synthesis of RNA
                     primer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase small subunit domain-containing
                     protein"
                     /protein_id="HVD37011.1"
                     /translation="MISSKSLEKSIDLVRSAFKEYYFKNTDLIDIPECIQEREFGYMQ
                     FGSGMIRHLSFKTRGELLATLIREVPSDVYSSNAYYTYPSYPIQEKTWKGADLIFDID
                     AKDLHLPCEITHSYSICLNCGRVLEINSESCASCNTKTIRKTSLPCSKCIYGLKNELK
                     RLVSLLIDDFGIEEKNIIIYFSGNNGFHVHILDNIFRLLDSQARSEVVGYVMGNDLLL
                     ESIGVRKASNGAYSTRLSKSRLIYGWRKRIADRLKIDHKSLDRLGNLIKRSGGYDGFK
                     LEVLHMANEMGAKIDPQVTSDVHRVFRLGGTLNSKSGLAKMKCVNLESFEPLTDACLL
                     GD"
BASE COUNT          350 a          185 c          242 g          329 t
ORIGIN      
        1 acttcgtaac gaaagtttat gttttgccat agaggaatgt aatggaataa ctagtcctat
       61 tcaatttggt cggctgagag tgagaaaaga actatcctat gatcagcagt aaatccttag
      121 aaaagagcat agacctagtt agaagtgcat ttaaggaata ttacttcaaa aatactgacc
      181 tcatagatat tcctgaatgt atccaggaac gcgaatttgg atatatgcaa tttggatcag
      241 gcatgatacg ccacctttca tttaaaacta gaggagaact gcttgcaact ttgatcagag
      301 aagttccctc cgatgtctac tcgtccaatg cttattacac gtatccaagc tatcctattc
      361 aagagaaaac gtggaaagga gcagacctta tatttgatat tgatgccaag gatctgcacc
      421 tcccttgtga aataactcat tcttattcta tttgtttaaa ttgcgggaga gtcttagaga
      481 tcaattcaga gtcttgtgca tcatgcaata ccaagacaat tcgtaaaacg tctcttccat
      541 gtagtaaatg tatatatggc ttaaagaatg aattgaaacg attagtcagt ttattaattg
      601 acgactttgg gatagaagaa aagaatataa tcatttattt ttctgggaac aatgggtttc
      661 atgttcatat tctagataat atctttagat tacttgattc ccaagctagg tcggaagtag
      721 taggctacgt catgggtaat gatttgttgc tagagagcat aggtgtgaga aaggcatcca
      781 atggagctta ctcaacaagg ttatcaaagt ctaggctaat ttatggctgg cgcaagcgta
      841 tagctgatag attaaagatt gatcataagt ctttagacag attaggcaat ttgattaaac
      901 gcagtggcgg ctacgacggt tttaaactgg aggttctgca tatggccaat gagatgggag
      961 ccaagattga tccacaagta actagcgatg tgcacagagt cttcagattg ggcggtactc
     1021 tgaacagtaa aagcgggttg gccaagatga aatgtgtcaa tctagaatct tttgagcctt
     1081 tgactgacgc ctgtctccta ggagat
//
LOCUS       DATLQL010000639         2027 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2635505, whole genome shotgun sequence.
ACCESSION   DATLQL010000639 DATLQL010000000
VERSION     DATLQL010000639.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2027)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2027)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2027
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2635505"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(386..1636)
                     /locus_tag="VNB68_06390"
     CDS             complement(386..1636)
                     /locus_tag="VNB68_06390"
                     /inference="COORDINATES: protein motif:HMM:NF027681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HVD37012.1"
                     /translation="MASERVLITGITGFVAPYIAKKLVDENYQVTGLQLPRADFGKSK
                     RLKAMGITSDIHIITGDVTDLTAILSAIQRSQPDWIFHLAAQSFVPESFRDPVRTFRV
                     NCLGTLNILEAARLKNVNPRIIFAGSSEEYGLQFKDADHLKTMRAKYGAGIEPVPKKY
                     PELPVDEESFFRPMSPYATSKLYGDITFRNYHNSFGLDTVVSRAFNHEGAGRGDYFVT
                     SAIVRQLVLMHMNQLRVMKIGDVQSFRDWSHVEDIVDGYLLLARKGQAGLAYNQGSMK
                     TYSVLSYILYTISVLGYEINKIMTLENDKIITSPLDPLELIIGSTHVESNVIDDKMFR
                     GELQYDLTDRGLLVETNKRNFKIEFEESRFRPSDVPILLSNTNKIKELGFESKRSLHD
                     IIQDQINYYLNSENRNESIPEFTF"
BASE COUNT          625 a          437 c          343 g          622 t
ORIGIN      
        1 aaagaaacag cgcgagtcgt tctgctttaa gagcctgttt caagccaatg atgttatgaa
       61 gttcttgcca agctatagga atagtcatag aaaagtctgc gcggatcatt tgcagaaagc
      121 ataaggagag aaataatatg ctgccgctgc tgctgctatt atcagcccaa acgccgagca
      181 tttccgcaac gaagcccctg atgcaatatg acagcccaag tcatagtatg aagttaccta
      241 gttaaaagtg acatgcaagc ttgaagctaa cttttggtct taatgcttat aacgtcttga
      301 tatctacatt gatgatgatt attgattacc gctgctacag cgttcttgct ttaaagaaat
      361 catcaagtaa ttttgatagc ggaattcaga aagtgaactc aggaatagat tcatttctgt
      421 tttcggaatt aagatagtag tttatttggt cttgtatgat atcatgcaga gatctcttgg
      481 attcaaaacc gagttcctta atcttgtttg tattagataa aagaattgga acatctgaag
      541 gcctaaacct tgattcctcg aattcaatct taaagtttct cttattagtt tctacaagca
      601 atcctcgatc tgtcaaatca tattgtaatt caccacgaaa catcttatca tcgataacat
      661 tagattctac atgcgtactc ccaattatca gttctaatgg atctaacgga gaagttatga
      721 ttttatcatt ctctaatgtc ataatcttgt tgatctcata gcctaagacg gaaatagtat
      781 acaaaatata acttaataca gaatatgttt tcatcgaacc ctgattgtat gccaaaccag
      841 cttgtccttt gcgtgccaac aataagtatc catcaacaat atcctcgaca tgactccaat
      901 ctcggaaaga ctgtacgtct ccaatcttca ttacccttaa ttgattcatg tgcattaaaa
      961 ctaattgtcg aacaatcgca gaggttacaa agtaatctcc tctaccggct ccctcatggt
     1021 taaatgctct tgaaacgaca gtatcaagac caaaagagtt atgataattt ctaaatgtaa
     1081 tatcaccata taacttgctg gttgcataag ggctcattgg cctgaaaaat gattcctcat
     1141 ctacgggcaa ctcggggtat ttcttaggga caggctctat tccagcacca tattttgccc
     1201 tcattgtctt taaatgatca gcatctttga attgcaaacc atactcctca gatgaacctg
     1261 cgaatataat cctaggattt acattcttta gcctggctgc ctctaagata ttcaacgtac
     1321 ctaaacaatt aaccctaaaa gttctcacgg gatctctgaa actctctggt acgaaagatt
     1381 gcgcagccaa atgaaatatc cagtcaggct gcgagcgctg aattgcagag aggatagcgg
     1441 taagatctgt aacatctcca gttattatgt gaatatctga agtaataccc atcgctttca
     1501 agcgtttcga tttaccaaag tctgctcgag gtaactgtaa acctgtaact tgataattct
     1561 catcgacgag tttctttgca atataaggag caacaaaacc tgtgatacct gttatcaata
     1621 ccctttctga agccactcgg ggtgtactaa ttaatatcac ttataaacca atttccctct
     1681 ccgttctctt caccaattct gaaatgattc cacagtctta gcctcgctaa attgctctgc
     1741 atattcaagt acatttctgc tataattgaa aagacacttt aaatctctaa gcaacaaaat
     1801 cacatgctgt gccatcgcat tagctaattt tttttaataa cgttaatcct agcttcacca
     1861 tatacctcat agagtctttc tctgagcccg gggacatctt atcctattgc aggcgtgccc
     1921 aaagcattac ctttagtcac aactaaaatc cctatcatcc cgtacaagcg gtactacaac
     1981 agcggttgtc gaagccttaa aaacagggag tattggtaat ttatcag
//
LOCUS       DATLQL010000640         1025 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2635569, whole genome shotgun sequence.
ACCESSION   DATLQL010000640 DATLQL010000000
VERSION     DATLQL010000640.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1025)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1025
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2635569"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(154..>1025)
                     /locus_tag="VNB68_06395"
     CDS             complement(154..>1025)
                     /locus_tag="VNB68_06395"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit A'/A''"
                     /protein_id="HVD37013.1"
                     /translation="RKKPVTPTMDVYLDEEHRVSREKALSVAREIIFTKVADLIERTE
                     TDYSGILTFHISESKLLERGCSIEDIMEVLKGPKKKYDVTLQEAKKIIKISIAGEPDA
                     QTLLTLKNKLMNARVKGVPDIERVTIVKQNEEWVIQTAGSNLSKIIAIDGIDTSRIIT
                     NNVYEVWQTLGIEAARNALIKEITNTLEEQGLEVDMRHIMLVADLMTSKGHLQQIGRH
                     GIAGTKTSVLARAAFEITVPTIARASLEGQIESLKGVTENVIVGATVPIGTGMVELYM
                     SVKDENEKSRKNN"
BASE COUNT          248 a          213 c          172 g          392 t
ORIGIN      
        1 aacgttggta cctgcgcgga ttttgcttct tccaagattt tagacttatt ttttggcatc
       61 agtgagtttg aaagaactat gagttttgaa cccttgattg aacccattac ttgtctggtt
      121 cctattttac atttattaga attgattgct tctttaattg ttttttcgag atttttcatt
      181 ttcatctttc acactcatgt aaagttcgac cataccggta ccaataggta cggtggcgcc
      241 tactataacg ttttctgtta cacctttaag ggactctatc tgtccttcca atgaagctct
      301 tgcaatagta ggtacagtaa tttcaaatgc ggcccgggcc agtacagatg ttttggtacc
      361 agcgattcca tgtcttccta tttgctgcaa atgccccttt gaagtcataa gatctgcaac
      421 taacataata tgtctcatat caacttctaa tccttgttct tcaagtgtgt tggtaatttc
      481 tttaatcaat gcatttcttg cagcttctat tcccagagtt tgccaaactt cataaacatt
      541 attcgtgata attcttgaag tgtcgatacc atctatcgca attatcttgg acaaattaga
      601 tcctgcggtc tgaataaccc attcttcatt ttgttttact attgttacac gttctatgtc
      661 tggcactccc ttaactcttg cattcattag tttgttcttc aatgtcaata acgtttgtgc
      721 atcgggctct cctgcgatag agatttttat aattttctta gcttcttgta aagtgacatc
      781 gtattttttc ttgggtcctt ttagtacttc catgatatct tctatcgagc agccacgttc
      841 aagtagtttt gattctgaga tatgaaatgt cagtatacca gaatagtcag tctcggttct
      901 ttcgattaaa tctgcgactt ttgtaaatat tatctcccta gcaacactaa gagccttctc
      961 ccttgagacc ctgtgttctt catccagata aacatccata gtaggggtga caggtttttt
     1021 tcttg
//
LOCUS       DATLQL010000641         2998 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2635661, whole genome shotgun sequence.
ACCESSION   DATLQL010000641 DATLQL010000000
VERSION     DATLQL010000641.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2998)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2998)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2998
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2635661"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            162..683
                     /locus_tag="VNB68_06400"
     CDS             162..683
                     /locus_tag="VNB68_06400"
                     /inference="COORDINATES: protein motif:HMM:NF015411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HVD37014.1"
                     /translation="MRVGLIGTGLMGVQIANRLLEVGYDLYVHNRTRSKTAEIIKNGG
                     KWIDSPKELGDKCSFALVCVTNGTALKRVCLGNDSLIRSVNKELVIGNLSTISPADSV
                     ECAATLRKNGIQSFQMPVMGGPDIARKGDLVAIISGDKNSIDKNIGVIESIARSIFNI
                     GKLMAQQIMLSWP"
     gene            686..1063
                     /locus_tag="VNB68_06405"
     CDS             686..1063
                     /locus_tag="VNB68_06405"
                     /inference="COORDINATES: protein motif:HMM:NF026183.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-binding protein"
                     /protein_id="HVD37015.1"
                     /translation="MNIALIGIALSESILYIKKAGIDPRIFIEIFNSTYFKTSLSEKK
                     GPKMINNDFEPRFHLRNMLKDLQLLVASMKPLNVSLPLSVLAEQMYQAAKNRGYAELD
                     YTAILAFLQDFNGMWPDQNKRGK"
     gene            complement(1247..1588)
                     /locus_tag="VNB68_06410"
     CDS             complement(1247..1588)
                     /locus_tag="VNB68_06410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HVD37016.1"
                     /translation="MHQENKIITIEEISKVNLCVGRIVSAEQIPNKQKILKAVVDIGS
                     ELRDVVVGAAEYYRPEALIGKVVVVCTNLAPKKVGTITSNGMLLAAECPDGKPIFLTI
                     DGEVPIGAPIR"
     gene            1852..2079
                     /locus_tag="VNB68_06415"
     CDS             1852..2079
                     /locus_tag="VNB68_06415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histone"
                     /protein_id="HVD37017.1"
                     /translation="MSSPELGLAAMYRIIKKSGAERVSDESAEQLRKIIEEIATKIAR
                     QAVDLSNHAGRRTIKSGDIQLAAKNLLNWAA"
     gene            2186..2770
                     /locus_tag="VNB68_06420"
     CDS             2186..2770
                     /locus_tag="VNB68_06420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HVD37018.1"
                     /translation="MTKNVLIVGLTGMPGAGKSTLAELLFRKGIPVVIMGDAVREAAQ
                     RANLEMTDANLGKLMIKLRKEKGSGAIAYLILDKIRSIILSSPRVKAVIVDGIRNIEE
                     MKVLASLGTVKLLAIHGCSLVRFKHVKARARSDAPDKEDDFSERDRRELTVGISEAIA
                     LADESISNNTITVDQLGQQGLAIIEKWLFENEGD"
     gene            2813..>2998
                     /locus_tag="VNB68_06425"
     CDS             2813..>2998
                     /locus_tag="VNB68_06425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37019.1"
                     /translation="MYPNFEVYVAAEAIINPSEEPSRVIKCLINAVNGGSPEINEEGN
                     LAMVETEGIHALHHIRVG"
BASE COUNT          971 a          518 c          644 g          865 t
ORIGIN      
        1 caaacagatc tctcattggg tgacatacgt gagtttcgat tttaattttc ggtgaacata
       61 cgcgttgcca caagcgctga tcaaataagt gccattttgc ctaaagccat ctaagatggg
      121 taggaataat ttaaatctga attatattag attgtgtagt tatgagagtg gggttaattg
      181 gtaccggatt aatgggagtt caaattgcca ataggttgct ggaagttggt tacgatcttt
      241 atgtacacaa tcgcacaagg agtaaaacag cggaaataat taaaaacggt gggaaatgga
      301 ttgacagtcc caaggaactt ggcgataaat gtagttttgc actagtatgt gtaacaaatg
      361 gtactgctct caaacgagtt tgtttgggga atgacagtct aattcgtagt gtcaacaaag
      421 aacttgttat aggcaacttg agtaccatct ccccagcaga ttcagttgag tgtgcagcga
      481 cactaaggaa gaatggcata caatcttttc agatgccagt gatgggtggt ccagatatcg
      541 caaggaaggg tgacttagta gctatcatat ctggcgacaa gaatagtatt gacaaaaata
      601 ttggagtgat tgaaagtatt gcgagatcca tatttaacat agggaaattg atggcgcagc
      661 aaattatgtt aagctggccc taaatatgaa tatcgccctt attggtattg ctctctcaga
      721 atctatatta tacattaaaa aagcaggaat agatcctcgt atttttattg aaatattcaa
      781 ttcgacgtat tttaaaacta gcctaagtga gaaaaaaggt cccaaaatga tcaataatga
      841 tttcgagccg cgcttccacc ttagaaatat gctaaaagat cttcaactgc ttgtagcttc
      901 catgaaacct ttaaacgtta gtctaccact ttcagttctc gccgaacaga tgtatcaagc
      961 cgcaaaaaat aggggttacg cagaactaga ctacacggct atattggcat ttctccaaga
     1021 ttttaatggt atgtggcctg atcaaaataa acgcggtaaa taaaataaaa actaaatcaa
     1081 caaaaataat ttgctacctt gtctgagcgg ttgggtgaat cttatagctt aaccatggga
     1141 attaaaatgt tgtattcata acccacgaat aataggcacg gattctggta gtttcctgaa
     1201 gaatcctttc aagtcacgtt acattaccga tttttacatt caagcactaa cgaataggtg
     1261 ctcctattgg gacttcacca tctatagtca aaaatatggg ttttccatca gggcattcag
     1321 ctgccaacaa catgccattt gatgtaatag tcccaacttt cttcggcgca aggttagtgc
     1381 aaactacaac gactttgcca atgagtgctt ccggtctgta atactcggct gctccaacta
     1441 ccacgtctct taattctgat ccaatgtcta caacagcctt caggatcttt tgtttattag
     1501 gaatttgttc agcagagacg atcctgccta cgcaaagatt tactttcgat atttcttcga
     1561 tagttataat tttattctct tgatgcatga attagaatat tacatcttga tatgattaaa
     1621 atcctttctc attaaggatg ttatgccagt tgatttaagt ccaaatcgcg tgtgtaaaaa
     1681 ttatttaaca tttcgatgat aagcattatt attcataatc gtgcattcta ctgattgccg
     1741 atgtaggttc acaatggaat aagattgcgg tgacacgttg caacgaatta attcagtgct
     1801 atgcattatt taacacatct tcttaattta atagcgatta acaaactaaa aatgtcaagt
     1861 ccagaactcg gtctagctgc tatgtatagg ataataaaga aatccggtgc tgagagggta
     1921 agtgacgaaa gtgcagagca gctccggaag ataattgaag agatagctac aaagattgct
     1981 cgtcaggcgg ttgatcttag taatcacgca ggtagaagga ctataaaatc aggagatatt
     2041 caactagcag caaaaaatct gttaaactgg gcggcttaaa aacagacttt agattcttaa
     2101 aggaacattc ggggtagaaa acgtaaagat ctgggttcag attttcttat ctttatagta
     2161 aagtagattt actatcaatt accgcatgac taagaatgtg ttaatagtcg gtcttacagg
     2221 aatgcctgga gcagggaaat ccacccttgc tgaattattg ttcagaaaag gaatacctgt
     2281 cgtaataatg ggagatgctg tgcgtgaagc tgcccagagg gcaaatttgg aaatgacaga
     2341 tgctaatcta ggaaaattaa tgataaaact tcgaaaggag aagggatccg gcgccatcgc
     2401 atatcttatt ctcgataaga ttaggtctat tattctaagc tcacctcgtg tgaaagccgt
     2461 aattgtagat ggcataagga acattgaaga aatgaaagtt ttggcatctt tggggacagt
     2521 caagttactg gcaattcacg gctgctctct agttcgcttc aaacatgtca aagctagagc
     2581 aagatcagat gcacctgata aggaggatga tttttctgag agggacagga gggaactgac
     2641 cgtgggaata agtgaagcaa tagcactggc tgacgagtcc atatccaata atacaataac
     2701 cgttgatcag ttgggtcaac agggattggc gattatcgaa aaatggctat ttgagaacga
     2761 gggagattaa agaaagagtt taatgatcag tcagttgctt tgtgtttaat agttgtaccc
     2821 aaactttgag gtgtatgtag ctgcagaggc cataattaat ccatcagaag aaccaagtag
     2881 ggtcatcaaa tgtcttataa atgcagtaaa cggtggttct cccgagatta atgaagaagg
     2941 aaatttagca atggtagaaa ctgaaggtat tcatgccctc caccacatca gagttggc
//
LOCUS       DATLQL010000642         1255 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1198809, whole genome shotgun sequence.
ACCESSION   DATLQL010000642 DATLQL010000000
VERSION     DATLQL010000642.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1255)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1255)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1255
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1198809"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            98..430
                     /gene="rplV"
                     /locus_tag="VNB68_06430"
                     /pseudo
     CDS             98..430
                     /gene="rplV"
                     /locus_tag="VNB68_06430"
                     /inference="COORDINATES: protein motif:HMM:NF003260.0"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
     gene            465..>1255
                     /locus_tag="VNB68_06435"
     CDS             465..>1255
                     /locus_tag="VNB68_06435"
                     /inference="COORDINATES: protein motif:HMM:NF003219.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HVD37020.1"
                     /translation="MSAVKNVMKNNYKMMELDEYLNATLKDAGYGGSEIQKTPIGTKI
                     TLFVTRPGLVIGRKGAGIKDLTARLEQQFGLSNPQVSVMEVTKPELNAKIMANRIGQL
                     VERGTAFRRAALWTINTIMEAGALGVEVTISGKLRSERSHFEKHTSGVVPKSGDIADK
                     VVRTSITQVLTKMGLLGIRLKIALKEDLPRDFQLLDEVNVAQESALEGEKGIPPPEVK
                     PATPPADKILPQTKVEEPISGSSSITVIDENKNGKIEASGDAIRL"
BASE COUNT          433 a          214 c          299 g          309 t
ORIGIN      
        1 tgttcgcgct tcaataaggg aaaccgacat ctcccataaa catgctagag aaatcgcgct
       61 tgcaataaag gggttgactg tctagaaagc caggagttat ctggaagagg tcattgaccg
      121 aaagattgca gtgccattta gaagatacaa taacgaggtg gcccatcgtt ccaacattaa
      181 ggatggcttc ttttcaggac gatttccaaa gaaggcttct actgaattct taaaactctt
      241 agacaatttg gagtcaaatg cagagtataa aggtatggac ctcgacagat tgagaatcat
      301 ttcatgtgtt actcacaaag gaacaaaact ggaacgcttc atacctagag caatgggtcg
      361 gtctagtcca aagatagata cattagtaca tatagagatc gttgctcagg aagggcatac
      421 ggtggaataa ttcaaatgaa aaaaaggata atgagtggta aataatgagc gctgtaaaaa
      481 atgtaatgaa aaataattat aaaatgatgg aacttgatga atacctaaat gccactttga
      541 aagatgcagg ttatggagga tcagagatcc agaaaactcc aataggtacc aagataacgt
      601 tgtttgttac tcgtcccggt cttgtaatag ggagaaaggg tgcaggtatt aaagatctga
      661 ccgccagatt agaacaacaa ttcggtttaa gtaatcctca agtttctgta atggaagtaa
      721 caaaaccgga actaaatgct aagataatgg caaatagaat cggacaactt gtagagagag
      781 gaactgcgtt tcgacgtgca gcgctttgga ctattaatac gataatggaa gctggtgctt
      841 tgggtgtaga ggtaactata tcaggtaagt taagaagcga acgttcacat tttgaaaagc
      901 acacttctgg agttgttcca aagagcggcg atatagcaga taaggtggtt agaaccagca
      961 tcacgcaggt gctgacaaaa atggggttat tgggaattcg gctaaaaata gccttgaaag
     1021 aagatttgcc gcgagatttc caacttctag atgaagttaa tgtggcgcaa gagtctgccc
     1081 tcgaggggga aaaaggaatt cctcctcctg aagtcaagcc tgcaaccccg cctgcagaca
     1141 aaatcttacc tcaaaccaaa gttgaagaac caatttcagg gagttcttct atcactgtaa
     1201 tcgacgagaa taaaaatggt aaaattgagg ctagtggaga tgcgattaga ttaga
//
LOCUS       DATLQL010000643         2397 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2465216, whole genome shotgun sequence.
ACCESSION   DATLQL010000643 DATLQL010000000
VERSION     DATLQL010000643.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2397)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2397)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2397
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2465216"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..915
                     /locus_tag="VNB68_06440"
     CDS             <1..915
                     /locus_tag="VNB68_06440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="complex I subunit 1 family protein"
                     /protein_id="HVD37021.1"
                     /translation="YAGKIEGILQLAADGLKLISKEIIVPSEADKPIFWLAPIAFVAT
                     AAALAALVPVAPGWVAADLDVGLLAVFAILGFFPLIALLFSWASNSKYPFIGGIRALH
                     QMIAFEIPFILSALSVVILAGSLNLTDIALAQQPFWFILFLPISAFVFYISSLAELER
                     IPFDLPEAESEIVAGWLTETSGMIYGLIQLGTYLKLYVLAALFVILFLGGWAGPQIFP
                     KEIIPGYTGVQIYNPTTVNAIFWFTLKTFGIIMLILLPRGINPRIRIDILLHTGWYKL
                     IVLTFINAFIALALIYGGVLGPGGVLTQ"
     gene            912..1436
                     /locus_tag="VNB68_06445"
     CDS             912..1436
                     /locus_tag="VNB68_06445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit I"
                     /protein_id="HVD37022.1"
                     /translation="MIFSSPNFHSSSASGFIKAIESGSKHLILKRFTFRYPEQKLKFV
                     GDGYQFDPKRGVGIAGTRGRHILFHDKCTGCQLCAIACEGIAEAIGMVKVNEQWKHNK
                     KSIMPQIDFGKCVFCGLCVDACPFYALFMTNDYELSSFTKEHLIYTPAQLAVKPKYDG
                     DVEIKIDEMGATHG"
     gene            1429..1953
                     /locus_tag="VNB68_06450"
     CDS             1429..1953
                     /locus_tag="VNB68_06450"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HVD37023.1"
                     /translation="MADPIFIAVAVMTIGSAIVALESRELVYGAIALAISMLGIAGFF
                     LILDSPFVAMFQITVYVGAVAVLVIFTVMLVRTQALFSTIEDKGRKLAGIIFMLIFIG
                     GIGSLLLLSGINDPIFGNLQRPAIDFTTIGKQMVTYYAPALIVLALALAGSVIGALAL
                     ARREDMEQQNERTY"
     gene            1937..2239
                     /gene="nuoK"
                     /locus_tag="VNB68_06455"
     CDS             1937..2239
                     /gene="nuoK"
                     /locus_tag="VNB68_06455"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HVD37024.1"
                     /translation="MSELIDFLIVSLVLVAIGIYGLVVKRNAIRMLFSIEIIANAANL
                     NLIAFSRNLPNAQGQVFALFSIAIAAAEVAVGLGIIIIAYRLYKEIDVEEFRSMRG"
BASE COUNT          655 a          436 c          492 g          814 t
ORIGIN      
        1 tatgccggca aaattgaagg aattctgcag ttagctgctg atggactgaa acttatttca
       61 aaagagatta tagttccttc agaagctgac aaaccgattt tctggctagc tcccattgca
      121 tttgttgcaa cagctgcagc actggccgcc ttggtacctg tggctcctgg ttgggtagcc
      181 gcagatctgg atgtaggtct tcttgcagta tttgctatat taggattttt tcctctaatt
      241 gcattacttt tctcttgggc aagtaatagc aaatatccat tcattggcgg aataagagca
      301 ttacatcaaa tgatagcttt cgaaattcca ttcattcttt cggctctttc tgttgttatt
      361 cttgctggtt ctcttaatct cacagatatt gcactcgctc aacagccatt ttggtttatt
      421 ttattccttc cgatcagtgc atttgtattc tatatttctt ctttagctga gcttgaaaga
      481 attccattcg acttacctga agcagaatct gaaattgtgg caggctggct tactgaaaca
      541 tcaggtatga tttatgggct aattcagctt ggaacctatc tcaaactcta tgttcttgct
      601 gcactttttg taatattatt cctaggcgga tgggcagggc ctcagatatt tccgaaagaa
      661 atcattccag gatatacagg agtacaaatt tataatccta ctacagtcaa tgcaattttt
      721 tggtttacat taaagacatt tggaataatc atgctaatat tacttccacg gggcataaat
      781 ccacgcatta gaatagatat tttgcttcac actggttggt acaaacttat agtcttgaca
      841 ttcataaatg cctttatagc actggcactg atttatggtg gcgtcttagg accaggtgga
      901 gtattgacac aatgattttt tcctctccga acttccattc atcatcagca agtggattta
      961 ttaaagcaat agaatcaggt tcaaagcatc tcatactcaa gaggtttact ttccgatatc
     1021 cagaacaaaa gctcaagttt gttggagatg gatatcagtt tgatccaaaa cgtggagttg
     1081 gtattgcagg aacacgtggt agacatatac tttttcatga taaatgtaca ggatgtcagc
     1141 tatgtgcaat tgcatgtgaa ggtattgcag aagctattgg tatggtaaaa gtaaatgaac
     1201 agtggaaaca caataagaaa tctatcatgc cacagattga ctttggcaaa tgtgtatttt
     1261 gtggtttatg tgttgatgca tgtccattct atgctttatt tatgacaaat gattatgaac
     1321 tgtcttcttt taccaaagaa catttgatct atactccagc acaattggca gtcaagccaa
     1381 aatatgatgg ggatgtcgaa ataaaaattg atgagatggg tgctacgcat ggctgatcct
     1441 atattcattg cagtagctgt aatgactatt ggttctgcaa tagtcgctct ggagagtcgt
     1501 gagctggtct atggtgcaat tgcgctagcg atttctatgt tgggcattgc aggcttcttt
     1561 cttattttag attctccatt tgtggcaatg tttcagataa ctgtctatgt aggtgcagta
     1621 gccgtattag ttatctttac agttatgctc gttagaactc aggctctgtt tagcacaata
     1681 gaggataaag gcagaaaatt agctggcatt atttttatgc taatttttat tggtggtata
     1741 ggatctcttc tgcttttatc tggaatcaat gacccaatct ttggtaatct tcaacgacct
     1801 gccattgatt ttacgacaat aggtaaacag atggttactt actatgcacc ggcgttaata
     1861 gtattagctt tagcattagc tggatctgta ataggagcgc tagcattagc acgcagggag
     1921 gacatggaac aacaaaatga gcgaacttat tgactttctt atagtgtcac tggtactggt
     1981 agcaataggt atctatgggc tagttgtcaa acgtaatgct atccgaatgc tcttttcgat
     2041 cgaaataatc gccaacgcgg caaacctaaa cttgattgct ttttcaagga atttaccgaa
     2101 tgcccaaggc caagtatttg ctcttttttc tattgctatt gccgcagcag aggtagccgt
     2161 cgggctcggt attatcatca tcgcatatag gctatacaaa gagatagatg ttgaagaatt
     2221 taggagtatg cgaggataga ttacaaaatg gtagagtcat cgtattttct tttagcagct
     2281 accttcctgc ctcttttatc gtctcctgta tcttattttt tggccaaaaa atatggcgtc
     2341 actattacga catggttttc gtttggaatt ttagctattt ctactggttt actattt
//
LOCUS       DATLQL010000644         1064 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1200278, whole genome shotgun sequence.
ACCESSION   DATLQL010000644 DATLQL010000000
VERSION     DATLQL010000644.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1064)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1064)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1064
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1200278"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..218
                     /locus_tag="VNB68_06460"
     CDS             <1..218
                     /locus_tag="VNB68_06460"
                     /inference="COORDINATES: protein motif:HMM:NF021883.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37025.1"
                     /translation="YREIQRVAFLSLRNGEHFLEAMIKDPWLSKVLTEKELRSLFDPN
                     DHLSASSKIIDKVAILVRETNRKFSLN"
     gene            complement(338..>1064)
                     /locus_tag="VNB68_06465"
     CDS             complement(338..>1064)
                     /locus_tag="VNB68_06465"
                     /inference="COORDINATES: protein motif:HMM:NF012936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="asparagine synthase C-terminal domain-containing
                     protein"
                     /protein_id="HVD37026.1"
                     /translation="AAVEQAVGSETSIAIAFSGGLDSSLLAKICKDMRVEVTLLTIGF
                     TESYDISFSREIASKMGLPHKILKLDDECFESAVNHIRNKIKCNIIPHLENCVGFFYI
                     GKLAHANGFRSVLTANGCDELFCGYDRFRSVYSQGSATLMKFMDEKLENEFVLMQEID
                     SITGEFGIKIKQPFLSPDFISLARNIPIDQKINGPNDLFRKHILRELAVSMNIPNQSA
                     MQPKKALQYSSGIHKNFCKVYRE"
BASE COUNT          332 a          214 c          192 g          326 t
ORIGIN      
        1 cttacaggga aattcaaaga gtagcgttcc tgtcgcttcg aaatggagaa cattttttag
       61 aagctatgat aaaagacccc tggctatcga aagtgctgac ggaaaaggag ttacgttcat
      121 tatttgatcc caacgaccat ctatccgcgt cgtcgaagat tatcgataaa gttgcaatcc
      181 tggtaaggga gaccaatcga aaattttctt taaactaact tatcagattg gagagaatta
      241 agtgtttttc actaatgatc gaaaacacct cggatttcat caagaccctg ttttaatatg
      301 aattgattcg ccttgtcaaa atcaatctca taaaggatca ttctctatat accttgcaaa
      361 aattcttgtg aatccctgaa ctgtactgga gagccttctt aggttgcatg gcggattggt
      421 ttggaatgtt catggaaaca gctaattctc gcaagatatg ttttcgaaac aagtcattgg
      481 gaccattaat cttttgatct atcggaatat ttcttgctaa cgatataaaa tcaggtgaca
      541 ggaacggctg tttaatttta attccaaatt cacctgttat gctatctatt tcctgcataa
      601 gtacaaactc gttttcaagc ttttcatcca taaacttcat aagggtagcg ctaccctgac
      661 tgtaaaccga tctgaatcta tcatatccgc agaaaagctc gtcacaaccg tttgctgtta
      721 aaacagatct gaagccattg gcatgagcaa gttttccaat atagaaaaaa ccaacacaat
      781 tttcaagatg tggtataata ttgcacttga ttttattgcg aatatgatta acagcacttt
      841 cgaagcattc atcgtctaac ttcaatattt tgtgaggtaa acccatttta gaagcgatct
      901 ctctggagaa ggaaatatca tatgactctg taaagcctat agtcaataag gttacctcta
      961 ctcgcatatc cttgcatatc tttgcgagta aggaactatc caacccgcct gaaaaagcta
     1021 tcgcaataga agtttcgctg ccaacggctt gttccacagc tgca
//
LOCUS       DATLQL010000645         1571 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1200286, whole genome shotgun sequence.
ACCESSION   DATLQL010000645 DATLQL010000000
VERSION     DATLQL010000645.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1571)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1571)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1571
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1200286"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(270..791)
                     /locus_tag="VNB68_06470"
     CDS             complement(270..791)
                     /locus_tag="VNB68_06470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dCMP deaminase family protein"
                     /protein_id="HVD37027.1"
                     /translation="MTSRPNWDVYFMLQAEVAKLRSNCLTRHVGCVIVKENRQIATGY
                     NGTPTGILNCFEGGCPRCLEREKGLIKSGDNLDRCLCTHAEANAIMQCALFGIGSTTT
                     GSTLYSTCAPCLECSKMVISVGIKRVVSLASYPEDGTAILSQANVMMVMLEKEQVIPW
                     ISYLDNRMRSDSK"
     gene            complement(903..>1571)
                     /locus_tag="VNB68_06475"
     CDS             complement(903..>1571)
                     /locus_tag="VNB68_06475"
                     /inference="COORDINATES: protein motif:HMM:NF013353.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0036361 - racemase activity, acting on
                     amino acids and derivatives [Evidence IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/glutamate racemase family protein"
                     /protein_id="HVD37028.1"
                     /translation="TKSPEQLNEIMIKSIKSLEPYSPKLIIMASNTPSVQVLENIREC
                     TSIPIMGVKPPLAEAARLTKKKHIGIMATESTLRSIQLRQQIAREVPQKIFVTRINAS
                     PLIRVIEDGSFFASNEIRQAVLESTFQPEAEDIIDVITLSSTHLPLIKDYLESLFSTI
                     KFVDPAHKTAKDVKKFLKDNGISKKTGTGKMLVFVTGDKIEFQQAIRQMGFKYKVQSI
                     STPF"
BASE COUNT          459 a          339 c          287 g          486 t
ORIGIN      
        1 aggaaatctg atttcacatg gccttgaatc tttcaaacac ttagttccaa agcaggcaaa
       61 tgtccacgtt acacaatgga tctggctttt caactcgcaa aaagcgaatg atgcaaaaat
      121 ccccaagcta tttgcgtagg tcatcctcta atcaaaattt caggtccatg aatgaaaaaa
      181 ccgcgaagga atgcaatttc ggtcaagata taatgcgcca caaaggggca aaaaataatt
      241 ctttacacct gaggatttta catataagct cattttgaat ccgatctcat tctattatcc
      301 aaatatgaga tccatggaat aacctgttcc ttctctaaca ttaccatcat gacatttgcc
      361 tgactaagaa ttgcggtacc gtcttccggg taggaagcta aggatactac cctctttatt
      421 cccacactta taaccatctt gctgcattcc aaacacggcg cacaagttga gtagagtgta
      481 gagccagttg ttgtacttcc tataccaaaa agtgcgcatt gcataatcgc gtttgcttca
      541 gcatgagtac ataaacatct atctagatta tcgccggatt tgatcaatcc tttttccctt
      601 tccaaacaac gggggcaacc accctcgaag caatttaata ttcctgtcgg cgttccattg
      661 tatcccgtgg caatctgtct attctctttt actatcacac atcctacgtg gcgagtaagg
      721 cagttagacc taagcttggc aacctccgct tgaagcataa aatatacatc ccaattagga
      781 cgagaagtca tgattcatac taaaagttct accgagggta tttaacagat actgttcgta
      841 tgaatatcta actgtctata atgattggta ttgactacaa caaccgaaaa aaatctcaaa
      901 cactagaacg gtgtgctgat cgattgtact ttatacttaa agcccatttg acggattgct
      961 tgttgaaact caattttatc gcctgtgaca aagacaagca tcttgcctgt gccagtcttt
     1021 ttcgaaatcc cgttatcttt caggaatttt tttacatctt ttgcagtctt gtgcgcaggg
     1081 tcaacaaatt taatcgttga aaagagggat tcgagatagt ctttaatcaa tggcaagtgg
     1141 gtactagaca gcgtgataac atctataatg tcttctgcct ccggttggaa agtactctca
     1201 agcacggctt gtctaatttc attgctagca aaaaaagaac catcttctat gactcggatc
     1261 agaggcgatg catttattct cgtgacaaat attttctgag gaacctctct tgcaatctgt
     1321 tgtcttagct gaatactcct cagtgttgat tctgtagcca ttatacctat atgcttcttt
     1381 tttgttaatc tggctgcctc agcaagaggt ggtttaacac ccataattgg aatggaagtg
     1441 cattctctaa tgttctcaag aacctgaaca gatggtgtat ttgaagccat tattataagc
     1501 ttagggctat atggttccaa agactttatc gactttatca tgatctcatt cagttgttca
     1561 ggcgacttag t
//
LOCUS       DATLQL010000646         2003 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1575900, whole genome shotgun sequence.
ACCESSION   DATLQL010000646 DATLQL010000000
VERSION     DATLQL010000646.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2003)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2003)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2003
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1575900"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..265)
                     /locus_tag="VNB68_06480"
     CDS             complement(<1..265)
                     /locus_tag="VNB68_06480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37029.1"
                     /translation="MAITDFYFACAVDEVPAYFTYEKESMLVIQSKASAKLGKSDFEK
                     IEKFIPALISHESIHVIISRIENSQTSESLDNIEVIVETGGRRF"
     gene            complement(386..>2003)
                     /locus_tag="VNB68_06485"
     CDS             complement(386..>2003)
                     /locus_tag="VNB68_06485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008705 - methionine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="vitamin B12 dependent-methionine synthase
                     activation domain-containing protein"
                     /protein_id="HVD37030.1"
                     /translation="GTKASSVNAPKKSDLNPDWDYYKKCYFRIVNRLKEGIETDVVGS
                     ITNRVLKKLGRETHQYQTVSLLREHTDLAHEAAVETLNDVLLPAMKEVGDKFGAGELI
                     LPFVLKSAECMKSAVAELEKHLIKKQGVSKGKLVICTVYGDVHDIGKNLVKTIISNNG
                     YSVFDLGKQVPIARIMEKIKEVDADAVGLSALLVSTSKQMNVFVENARQMNLKIPVLC
                     GGAAINSDYINRVAKGDSIYAPGVFYCKTAFDGLRVMNTLMSPEKEVFLNKWRDKIQS
                     WKDKPSTTSAKEEIQQSQITPVSPPIPPRLDVETRLEPKDIDLYKIWEYLNKKSLFVL
                     SWGIRGEGAKGLGVEPERLYAEWKDRVVKEKLFSPRIVYGYFRCHNQDRKLAVESKGG
                     TVVFDFPRSSKGKRPCITDYFGENDVVAFQAVTVGTEVSLKIDELNSQDKYTDAYYLH
                     GLAVETAEALAEWTHMRIKNELKIDSNQGLRYSWGYPSCPDVSQHELVWKLIDPVKSG
                     MNLTEAGQIIPEQSTAAIVVHHPEAEYFLL"
BASE COUNT          533 a          460 c          342 g          668 t
ORIGIN      
        1 gaaaccttct cccccctgtc tccacgataa cttctatatt gtccagcgat tcagaagttt
       61 gagaattttc tattcttgat attataacat gaatggattc atgtgaaatc aaggcaggga
      121 tgaatttttc aattttttca aagtcactct ttcctaattt tgctgaagcc ttagattgaa
      181 taaccaacat actttctttt tcatacgtga aatatgctgg cacttcgtcc actgcgcaag
      241 caaagtaaaa atcagtaata gccatttccc aacaaagatt ctaaaatttt tcgattattc
      301 acagtggggc attcgctcct ttatacaagg atatttattt tttcctcctt tgcataacaa
      361 gggttatacg cacgctcacc ccagattata atagaaagta ttcagcttct ggatggtgaa
      421 ctactattgc tgctgttgac tgttcaggaa ttatctgtcc agcttcggtc aaattcatgc
      481 ccgatttgac agggtcgatt agtttccata caagttcatg ttgggagaca tcaggacaac
      541 ttggatatcc ccaactgtac cgaagtccct gatttgaatc aattttaagt tcatttttga
      601 tcctcatgtg agtccattct gccaatgcct cggcagtttc aactgccaat ccatgtaaat
      661 aataggcatc ggtgtattta tcttgagaat tgagctcatc aatctttagg gaaacttcgg
      721 tccctaccgt gactgcctga aatgctacta catcgttttc accaaagtag tctgttatac
      781 agggcctttt tcctttcgat gatctgggga agtcgaagac aactgttcca cctttcgatt
      841 ctactgctaa ctttctgtcc tgattatgac atctaaaata cccgtaaact atacgcggag
      901 aaaataattt ctctttgacg actcggtctt tccattccgc ataaagtcgt tctggttcta
      961 cgccaagacc cttagcaccc tcgccacgaa tcccccaaga taagacaaac aacgactttt
     1021 tattcagata ttcccaaatc ttgtaaagat cgatatcctt aggttccaat cgtgtttcaa
     1081 cgtccagacg aggtggaatc ggtggagaga ccggtgttat ctggctttgt tgaatctctt
     1141 ctttagcaga agtcgttgat ggtttgtctt tccatgattg gattttatct ctccatttat
     1201 tcaaaaaaac ctctttttca ggagacatta atgtattcat gactcgaagt ccgtcaaagg
     1261 ctgtcttgca gtaaaacact cctggagcgt aaatggaatc gcccttggct acccgattaa
     1321 tgtagtcact atttatcgct gcccctccac atagaactgg aatttttaga ttcatctgcc
     1381 ttgcattttc tacgaaaaca ttcatttgtt tagatgtaga gaccaggaga gcggatagcc
     1441 caactgcatc tgcatctact tcttttattt tttccataat acgtgctatc gggacttgct
     1501 ttcccagatc gaaaaccgag tatccgttat ttgaaattat tgtctttacc aggttctttc
     1561 caatatcatg cacgtctcca taaacagtac aaatgaccaa tttacctttg ctgactccct
     1621 gtttctttat caaatgcttt tccagctctg ccactgctga tttcatacac tctgcagatt
     1681 ttaacacaaa tggtaatatc aattcccctg caccaaattt gtcacctact tccttcatag
     1741 ctggcaacaa aacatcgttc aatgtttcga cagctgcctc atgagcaaga tcagtatgtt
     1801 ctctcagtag tgatacagtc tgatactgat gtgtttctcg acccagtttt ttcaacaccc
     1861 tattagttat tgatccaacc acatcagttt caattccttc cttaagacga tttactatac
     1921 gaaagtaaca ttttttgtaa tagtcccagt ctgggttaag gtctgatttc ttgggtgcat
     1981 taaccgagct cgctttggta cct
//
LOCUS       DATLQL010000647         1172 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_686047, whole genome shotgun sequence.
ACCESSION   DATLQL010000647 DATLQL010000000
VERSION     DATLQL010000647.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1172)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1172)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1172
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_686047"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1122
                     /locus_tag="VNB68_06490"
     CDS             <1..1122
                     /locus_tag="VNB68_06490"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HVD37031.1"
                     /translation="AGSGDIFAQATMNTIAFAPVRVGGEHFLTLYVNTPHNLASEVGN
                     LISLQKNFSTLIVTIVGAVAFAIAFLVLTWNKGLESIVKTRTEELRRSNESLTESNKQ
                     LASANEQLKIQDKMQKEFINIAAHELRTPMQPIIGLTEVIKSKMTNAGEKKDQIELLD
                     IVIRNAKRLQRLSEDILDVTKIESKALNLKMDILNLKEVISKTVEDYRNQIQKTNSNV
                     KLLYEPDQEKGKRKGEEAEHDTILVYVDRTKLTQVISNLLNNALKFTRDGTVSVATRK
                     KEGFQKILVSVKDTGDGIDPEILPRLFSKFATKSFQGTGLGLFISKSIIEAHGGKIWA
                     ENNKTDGETGAIFYFDLPLIDQQHLDAKAFEQNSNQSII"
BASE COUNT          446 a          187 c          244 g          295 t
ORIGIN      
        1 gcaggatcag gagatatctt tgcacaggct acaatgaaca ccatagcttt tgcgcctgta
       61 agggttggtg gcgaacattt tttgaccttg tatgttaaca ctccacataa ccttgcaagt
      121 gaggtaggta atttgatcag cctacaaaaa aactttagca cattaatagt tacaatagta
      181 ggagcagttg catttgcaat tgcgtttctt gttctgacat ggaacaaagg gttggagagt
      241 atagtcaaga caagaactga agaattaagg agatcaaatg agtcgctaac agaatcaaac
      301 aaacagcttg catcggccaa tgaacagtta aaaattcaag acaagatgca gaaggaattt
      361 attaatatag cagctcacga gttacgcacg ccgatgcagc cgataattgg cttaacagaa
      421 gttatcaaat ctaagatgac aaatgcaggg gaaaaaaagg accaaattga attattagat
      481 atagttatta gaaatgcaaa aaggttgcag aggctttcgg aagatatctt ggacgttaca
      541 aaaatagaaa gcaaggctct gaatttaaag atggatatcc tcaacctaaa agaagtgata
      601 tcaaagaccg tagaggatta tagaaatcaa atacagaaaa ctaatagtaa tgttaaatta
      661 ctctatgaac cagatcaaga gaaaggaaaa cgaaaaggag aagaagcgga acatgatact
      721 attcttgtat acgtagacag aacgaagcta actcaagtta tctccaatct actaaataat
      781 gctctcaagt ttacaagaga tgggactgta tctgtagcta caagaaagaa agaaggcttt
      841 caaaagattc ttgttagtgt aaaggatact ggtgacggaa tagatcctga aatactacct
      901 aggttattct caaagtttgc tacaaagtct ttccaaggca ctggattagg attgttcata
      961 tcaaaaagta ttatagaagc ccatggggga aagatatggg ctgagaataa caaaacagat
     1021 ggagaaacag gagcgatatt ctactttgat ttaccactca tcgatcaaca acacctagac
     1081 gcaaaggcat ttgaacaaaa tagtaatcag tctataattt agaagaagaa acattcagtc
     1141 agcatgatcg tctttttgac tttcgtagaa gc
//
LOCUS       DATLQL010000648         2312 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2638008, whole genome shotgun sequence.
ACCESSION   DATLQL010000648 DATLQL010000000
VERSION     DATLQL010000648.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2312)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2312)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2312
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2638008"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..967
                     /locus_tag="VNB68_06495"
     CDS             <1..967
                     /locus_tag="VNB68_06495"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HVD37032.1"
                     /translation="KNESNHKIHLLQAGHNISQTLTQSDSEDEVIKMTSELLRSGKWK
                     HLKFRGMDVSSPVKNHSLGRTHPLTDLISEVKEIFISMGFSEIEGPMIQSSFWNFDVL
                     FTPQDHPAREMQDTFYIHGNMPTEDIDNTVLNRVSDIHSKCWKYEWNVEEATRHLLRT
                     HTTAVTLRYLADNKQDEARIFSVGRVFRNEKMTYKHLMEFHQVEGVVTGKDLTLRDLM
                     GLQTLFYSRLGIKKVKFWPTYFPYTEPSLQSMVFIEETGKWIELFGMGIFRPEVTASV
                     GLTGNVLAWGGGLERIAMIRYGLNDVRELYENRLSWLRSVPICRL"
     gene            955..>2312
                     /gene="pheT"
                     /locus_tag="VNB68_06500"
     CDS             955..>2312
                     /gene="pheT"
                     /locus_tag="VNB68_06500"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: protein motif:HMM:TIGR00471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009328 - phenylalanine-tRNA ligase
                     complex [Evidence IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HVD37033.1"
                     /translation="MPVVSFPVRKIEEFFPRYDVNSIVDILPYIGLDIEYVDEDEIRV
                     EYSPNRPDFSSYYGIARSLKGLLEIEMGIPNVKIIEGKNYVISVNKSVSHIRPFIVGL
                     VAKNGSLDDESIRNLVGMQEDLHNGLGRRRAKASIGFHDLSKLKFPLRYDTVSSNASF
                     SPLGFKEAITIAEILRETEAGRKHRKILPSTKIFPVLLDGSDQIISLPPIINGDSTKI
                     NRNSRDLFVEATGTNLSLLEDVLAIMAITLSDMKFDIESIVIIYGKESIVSPNMQLRK
                     FEGLELSYVNNVLGIQITPELALKCLKKSRLDGLIDGCKITCNVPRYRTDISEPIDLV
                     EDIGIGYGIFNLDPSLPAYRFSGKKSRNTIISEKIRQTLVGMGLIENVNFSLISRTLE
                     HEDVSRANDYADAVAVVGSKSEEHEILRSSLLPSILRSLSHNIHEEYPQRLFEIGKVF
                     SL"
BASE COUNT          754 a          391 c          498 g          669 t
ORIGIN      
        1 aaaaaatgaa agcaatcata agatccattt attacaggca ggacacaata tttcccaaac
       61 attaacacaa tctgattctg aggacgaagt tattaagatg acctccgagt tattgcgttc
      121 tggcaaatgg aaacatttga aattcagagg tatggacgtt tcttctccag ttaagaatca
      181 tagtcttggc aggacccacc ctctgacaga tttgataagt gaagtgaagg aaatcttcat
      241 ctctatgggc ttttcggaaa ttgaagggcc aatgatccag tctagttttt ggaattttga
      301 cgtattgttt acacctcagg atcaccctgc acgtgagatg caagatacgt tctatattca
      361 tggcaatatg cctactgagg acattgacaa cactgttcta aatagagttt cagatattca
      421 ttctaaatgc tggaaatatg aatggaacgt tgaagaggca acaaggcact tattgagaac
      481 tcatacaaca gcagtaactc taagatattt agctgataat aaacaggatg aagctagaat
      541 tttctcagtc ggcagagttt ttagaaacga aaaaatgaca tataagcacc taatggaatt
      601 ccaccaagtt gaaggagtgg ttactggtaa agatcttact ttgagggact tgatgggatt
      661 acaaacgctt ttctattcaa ggcttggcat aaagaaggta aaattttggc cgacctattt
      721 tccgtacaca gagccatctc ttcaatccat ggtatttatt gaggaaacag gcaagtggat
      781 tgaattgttc ggcatgggaa tatttagacc agaggtaact gcatcggtag ggctcaccgg
      841 taacgttttg gcatggggtg gcggtcttga aagaatagcc atgatccggt acgggctaaa
      901 tgatgtacga gaactgtatg aaaatcgatt gtcgtggtta cggagtgttc cgatttgccg
      961 gttgtaagct ttcctgttcg aaagattgaa gaattttttc ccagatatga tgttaatagt
     1021 atagtggata tattacctta cataggactc gatatagaat atgtcgatga ggacgaaatt
     1081 agagtagaat atagtccgaa taggccagat ttttcgtcat attatggaat tgctagaagt
     1141 ttgaaagggc ttcttgaaat agagatgggg atacccaatg tcaaaatcat agaaggcaaa
     1201 aattatgtga ttagtgttaa taaatcagtt tctcacataa gaccattcat tgttggtcta
     1261 gtagcaaaaa atggcagtct agatgatgaa tcgataagaa acctcgtagg aatgcaagaa
     1321 gatcttcata atggtctcgg aaggcgaaga gctaaagcat ctattggttt tcacgatctc
     1381 tcaaaattaa aatttccttt aagatatgac actgtatcgt ccaacgcttc gttttcacct
     1441 ttgggattca aagaggcgat cacaatagct gagattttga gagagactga ggcaggaaga
     1501 aaacatcgta aaattttgcc ttccactaaa atctttcctg tacttctcga tggttcggac
     1561 cagattattt cacttccgcc gataattaac ggcgacagca caaaaatcaa tcgtaattcc
     1621 agagatttat tcgtcgaagc cactggcaca aatttatccc tattagaaga tgtgctagca
     1681 atcatggcaa tcaccctatc tgacatgaaa tttgacatag aaagcatagt tattatttat
     1741 ggtaaagaaa gtattgtatc tcccaatatg caacttagga aatttgaagg actagaattg
     1801 agttatgtaa acaatgtcct tggcattcaa attacaccag aacttgctct aaaatgtctc
     1861 aaaaagagta ggctagatgg cctgattgat ggttgtaaaa ttacatgtaa tgttccccgt
     1921 tataggacag atattagtga gcctattgat ttggtggaag atattggcat aggctatgga
     1981 atattcaatc tagacccaag ccttcctgcg tacaggttct caggaaaaaa gagtcgcaac
     2041 acaataatat ctgaaaagat caggcagacc ctcgttggaa tggggttaat agaaaatgtg
     2101 aatttcagtc ttatcagcag gacacttgaa catgaagatg tcagtcgggc taatgattat
     2161 gcggatgcag tagcagtggt cggatcaaaa agtgaagagc atgaaatctt aagaagttct
     2221 cttcttcctt ctatactaag gtcgttatct cataatatcc acgaagagta tccacaaaga
     2281 ctttttgaaa tcggaaaagt gttttcgttg ga
//
LOCUS       DATLQL010000649         3062 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_686627, whole genome shotgun sequence.
ACCESSION   DATLQL010000649 DATLQL010000000
VERSION     DATLQL010000649.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3062)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3062)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3062
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_686627"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(97..879)
                     /locus_tag="VNB68_06505"
     CDS             complement(97..879)
                     /locus_tag="VNB68_06505"
                     /inference="COORDINATES: protein motif:HMM:NF022932.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HVD37034.1"
                     /translation="MDLSDKSRKAMEDLGLTSYEIKVYMALLESGSMNASEMSKKSSV
                     PYSKIYDVLNSLEEKGWIESNSSRPQKFFPKSPHTAIETTKMLIESRLKASETLVIAE
                     LTPLYEKTGIKERPEIWVVRGLYNIATKVMEIIETCQKELLIALPQISDNIARTMQPS
                     LRVLSEKGVKITVLASGKTNSDTLRAISRIADVRVKDSMFGGGVIGDTSQVIILLGEA
                     KSGQGNLEPIAIWADHIGLAKFAKDYFQYLWHDATLPNSFQE"
     gene            1062..2783
                     /locus_tag="VNB68_06510"
     CDS             1062..2783
                     /locus_tag="VNB68_06510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HVD37035.1"
                     /translation="MELIQISNMTSSNKLSTQKTTIRHTQSICPDCNMILDAEVFERD
                     GKVFMTKTCPTHGECEELYFGSYKMYNKFSTYWMDGKGAHAPNVMVDKCACPTNCGLC
                     TNHLSHSGLANIIITNRCDLTCWYCFFYVKKGLEGAYLYEPNHEQVRAMMKTLKAQKP
                     IAGNSIQITGGEPMLRDDLYDLIKIMKEEGVDHIQLNTNGIKLALSPETMRQVREAGI
                     NNLYLSFDGVTPRTNPKNHWEVPSTLESARKCGMTVVFVPTVIKSINDHELGGIIRYA
                     QRNLDVVHAVNFQPVSLTGRMTKKEREKYRITIPDCIERIEEQSNGEISSDAWFPVPS
                     CMPMTNVIEAFSKKPKYELSIHFACGAGTYVFEDVDTKKLVPLTSFVDLKGVLEYFEE
                     KTDEIRSGANRYWAILEVVRKLNQFVDREKQPHGLNLAKMFSSILLKRSFDSVGSWHI
                     RSLFLGMMHFQDKYNEDLERLQRCDIHYLTPDLRIIPFCAFNVIPEWYRDRIQKKYSI
                     PVEEWEKAHGQTLEAGLYRGLMRRGKPEAQMGCAMSEMHKAASEATAAEDADHKGVEL
                     RNGMAGA"
BASE COUNT          962 a          593 c          627 g          880 t
ORIGIN      
        1 gtatgtcagt cctttcatat tcatttccca gtaaagataa gataggtcat aactattcga
       61 aatctaaaac tttgtgtttg gaaaaaacat ttgcaattat tcctgaaaac tgttgggaag
      121 agtggcatca tgccagagat actgaaaata gtcttttgca aatttagcga ggccaatatg
      181 atctgcccat atggcaatgg gctcaagatt accctgtcca cttttggcct cacctaagag
      241 aattataacc tgactagtat cccctatgac tcctccacca aacatgctat cctttaccct
      301 aacatcggct attctcgaaa ttgcccgcag agtgtccgaa tttgtcttcc ctgatgccaa
      361 aactgtgatc ttgactcctt tttccgataa cactcttaat gatggctgca tcgttcgtgc
      421 tatgttgtct gatatttggg gaagtgctat taatagctcc ttctgacaag tttcgataat
      481 ttccatcact ttggttgcta tattgtacaa ccctctgaca acccatattt caggtctttc
      541 ttttatacct gttttttcgt aaagaggggt aagttctgcg attactagag tctcacttgc
      601 tttcagtcga ctctctatta gcatctttgt tgtttctatg gccgtatggg gtgatttggg
      661 aaagaatttc tgtggtctcg agctatttga ctcaatccat cctttttctt ccagcgaatt
      721 caggacatca taaattttag aatatgggac agaagatttt ttactcatct ccgatgcatt
      781 catcgaacca gactccaata gcgccatgta cactttgatc tcataacttg ttagacccag
      841 gtcttccatc gcttttcttg atttgtcgct aaggtccatc aggctcggta gacagtgccg
      901 gaaacacgat aatatactta tttatccact aaattgatga actagaaaca aactatcaat
      961 aattgatgga ataaacctat tcaccttatt attcctaaca gtatatttaa atatgaaatc
     1021 gacagagctc ccactgtaaa ggtaagggta ggtagaattc aatggaatta attcaaatat
     1081 caaatatgac gagcagtaac aaattaagta cacaaaagac gactatacga catactcaaa
     1141 gtatctgtcc tgactgtaac atgatcttgg atgctgaggt ctttgaaaga gatggcaaag
     1201 tcttcatgac aaagacatgt ccaacacacg gtgaatgtga ggagctatac tttggatctt
     1261 acaagatgta taacaaattc agcacatact ggatggacgg caaaggagca catgcaccaa
     1321 atgtaatggt cgacaagtgt gcttgtccaa ctaactgtgg actgtgtacc aatcacttat
     1381 ctcactcagg acttgctaac atcattataa ctaacagatg tgatctcaca tgttggtact
     1441 gtttctttta cgtaaagaag ggcttggaag gtgcctatct gtacgaacct aatcatgaac
     1501 aggtaagggc catgatgaag actctcaaag cacaaaaacc cattgcgggt aactcgatac
     1561 agattactgg tggggagccg atgttaagag atgacctcta cgatcttatc aaaattatga
     1621 aggaagaagg agtcgatcat atccaactta acactaacgg cataaaattg gcattatcgc
     1681 cagaaactat gcgacaggta agagaggctg gtataaataa tctatattta tcattcgacg
     1741 gtgtaacacc aagaactaac cccaagaatc attgggaagt tccctccact ttagagtctg
     1801 cccgaaaatg cggtatgact gtggtattcg tccctactgt aataaagtca attaatgatc
     1861 acgagttagg tgggattatt cgatatgctc aaaggaactt ggatgtggtt cacgccgtta
     1921 acttccagcc agtttcattg acaggaagaa tgactaaaaa ggaacgagaa aaatatagaa
     1981 taaccattcc tgactgtata gagagaattg aagaacagtc aaatggagaa atttctagcg
     2041 atgcgtggtt cccagtacct tcatgcatgc ctatgaccaa tgtcattgaa gcgtttagta
     2101 agaaaccgaa atacgaactt tctattcatt tcgcttgtgg tgccggaacc tatgtctttg
     2161 aagatgtgga tacaaaaaaa ctggtccctc taacatcatt cgtggatctt aaaggagtat
     2221 tggagtactt cgaagaaaaa acagatgaaa tcaggtcagg cgcaaaccgt tattgggcca
     2281 tattggaagt tgtgcggaag ttgaatcaat ttgttgacag agaaaagcaa ccacatggtc
     2341 ttaatttggc aaaaatgttc tcgagtattt tgctgaaacg aagctttgat tctgttggat
     2401 cctggcatat aagatccctg ttcctaggga tgatgcactt ccaagacaag tacaacgaag
     2461 atttggaaag attgcagagg tgcgatatac actatctcac accagatctg aggattattc
     2521 cattctgcgc gttcaatgtt attcctgagt ggtacagaga tagaatacaa aagaaataca
     2581 gtataccagt tgaggagtgg gaaaaagctc atggacaaac tcttgaagca ggactgtata
     2641 gaggccttat gaggagagga aaaccagagg cacaaatggg atgtgcaatg tctgagatgc
     2701 acaaagcagc atctgaagct acggctgcag aagatgcaga tcacaaagga gtcgaactta
     2761 ggaacggaat ggctggcgca tagctcaacc atttcgttaa gacaagcaac cagacggtaa
     2821 agtgactaac aagcagaata gagatttctt tatttttctc cttatcttta tagttcaaat
     2881 ctgactgcta aaaggaagaa accgatagaa gtttttctgg gtaattgcaa attattccca
     2941 tatcaaaaag acctaaaatt ttattttgat tagtattcat tgcgagacac ggactaatcg
     3001 gtattctcac ttttctcatt gttatcgttg aaaggacgag ttgtaagaag agcatttctc
     3061 gg
//
LOCUS       DATLQL010000650         1450 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1395222, whole genome shotgun sequence.
ACCESSION   DATLQL010000650 DATLQL010000000
VERSION     DATLQL010000650.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1450)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1450)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1450
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1395222"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            19..>1450
                     /locus_tag="VNB68_06515"
     CDS             19..>1450
                     /locus_tag="VNB68_06515"
                     /inference="COORDINATES: protein motif:HMM:NF036484.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HVD37036.1"
                     /translation="MGTVTEIYDYLRLLYARIGTPFCPKCHRKITSQSSELITDSVLK
                     SANQRDTLILAPIIQGKKGTYEKLFAQLKQDGFSRIRLDGEISNIENEEAEKSGYPRL
                     DRQKKHTIEVVIDRLKVSVEEKSRLNESVESALKVGNGLVIASIDGKDNLFSQRNACP
                     LCEISLGDLEPRMFSFNSPFGACGECNGLGVKIEFDPDLIIPIKSKSILEGAVKPWSG
                     HFATFRSAMLGDVGKRFGFDLNTPISKMTKDQLDVILYGSDENIHYKYESRYTDSKWE
                     YRGSFEGVIPNLERTYKQTESESKREEIIQFMREQPCDGCHGRRLRKEALSVKIQNHS
                     IMDVCDLSIDNCYKFFNTVELTESEKYIARTILKEIVSRIEFLRNVGLNYLTLNRMAA
                     TLSGGESQRIRLATQIGSNLTGVLYVLDEPTIGLHQRDNHRLIDTLKNLRDLDNTLLV
                     VEHDEEVTRNADWIIDIGPGAGIHGGN"
BASE COUNT          484 a          249 c          327 g          390 t
ORIGIN      
        1 aaaaatccca ggtcgactgt gggtacagtt acagaaatat atgattatct tagactcctc
       61 tatgctagaa ttgggacgcc tttttgtcca aaatgtcatc gaaaaattac cagtcaatct
      121 tcggagttga tcaccgattc ggtattaaaa tctgccaatc aaagagacac attgatatta
      181 gctccaatca tacaggggaa aaaaggaaca tatgaaaaat tatttgctca actgaaacag
      241 gatggctttt ctaggatcag attagatggt gaaataagca atatagagaa tgaagaggca
      301 gaaaaatcag gatatcctag actagatagg cagaagaagc atacaatcga agtcgtcatc
      361 gataggttaa aagtttctgt ggaggaaaaa agcagattga acgaatctgt tgaatcggca
      421 ttgaaggtcg gaaatggact cgtgattgct tcaattgatg gtaaagacaa tctattttca
      481 caacgaaacg catgtcctct ttgcgaaatt agcctaggcg atttagaacc gcggatgttc
      541 tctttcaact caccgtttgg agcttgcggg gaatgtaatg ggctaggagt taagattgaa
      601 ttcgatcccg atttaattat tcctataaag tcaaaaagca tcttggaagg ggctgttaaa
      661 ccttggtcgg gccattttgc tacgtttcgc tcagcgatgc ttggagacgt aggaaagcgc
      721 tttggatttg accttaacac acccatttcc aaaatgacaa aggatcagct cgatgttatc
      781 ctttatggaa gtgatgaaaa tattcactat aaatatgaat caagatatac cgatagcaaa
      841 tgggaataca gaggatcgtt tgagggtgta atcccgaatc tggagaggac atacaagcag
      901 actgaatccg aatcgaagcg agaggagatt attcaattta tgcgtgaaca accctgtgat
      961 gggtgtcacg gaaggcgctt gcgcaaggaa gcactatcgg taaaaatcca gaaccattca
     1021 ataatggatg tttgcgacct ttctatagat aattgctaca agttctttaa tacagtagaa
     1081 cttacagaga gtgagaagta tattgcaaga acgatactaa aggagatcgt ttcacgaatc
     1141 gaatttttac gtaatgtcgg cttgaactat ttaacgttga atagaatggc agccactctt
     1201 tctggaggtg aatcacaaag aattcgattg gcaacacaga tcggttcaaa cttaactgga
     1261 gtgctatatg tccttgacga acctaccatt ggtttacatc agagagacaa tcatagatta
     1321 attgatactt taaaaaattt acgagatcta gacaatactt tattggtagt tgagcatgat
     1381 gaagaagtta cccgtaatgc agattggatc atcgatatag gcccaggggc aggtatccat
     1441 ggcggaaaca
//
LOCUS       DATLQL010000651         1103 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_687165, whole genome shotgun sequence.
ACCESSION   DATLQL010000651 DATLQL010000000
VERSION     DATLQL010000651.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1103)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1103)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1103
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_687165"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(130..>1103)
                     /locus_tag="VNB68_06520"
     CDS             complement(130..>1103)
                     /locus_tag="VNB68_06520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HVD37037.1"
                     /translation="LGCMTTVTGVSGSGKSTLVNEILFKAMSNHFYSSKEKPGSHEKI
                     TGLQNLDKVIGIDQSPIGRTPRSNTATYVNAFGPIREIFAKTMKAREMGYKPGRFSFN
                     VPGGRCDSCEGAGVKRIEMQFLADVYVTCDECKGKRYNLETLEITYKGKTISDVLNMT
                     VEEALEFFSNISSIERKLLTLHDVGLGYIRLGQPATTLSGGEAQRIKLSSELARRDTG
                     RTLYILDEPTTGLHFADVKKLLHVLDRLVNVGNTVILIEHNLDVIGSSDWIVDLGPEG
                     GENGGNIVVNGTPEQVSNHISSYTGKYLKSKLMVSQTIRKSKTGVRT"
BASE COUNT          285 a          236 c          197 g          385 t
ORIGIN      
        1 ctatgtagat tattctacct tctttgtttt tcatcatgta tactcctgga tcaaaaggaa
       61 gcaggagcgc ttttttgcgt accttcgcta tattttcaga tagatttaaa gtcttaggta
      121 tagaatatat taagttcgta caccagtttt actttttctt attgtctgac ttaccattaa
      181 ctttgatttg agatattttc cggtataact tgaaatatgg tttgatactt gttccggtgt
      241 gccattaaca acaatgtttc cgccattctc tccgccttca ggaccaaggt caactatcca
      301 gtcagaggat ccaattacat caagattatg ttcaattaga atgacggtgt tcccaacatt
      361 cacaagtcta tctaatacat gaagaagctt ttttacgtcg gcaaagtgca atcctgtagt
      421 tggttcgtca agaatataga gtgttctccc tgtatccctt cttgcaagtt cagatgataa
      481 ctttattctc tgtgcctctc ctcctgaaag tgttgttgcc ggctgtccca gtcttatgta
      541 ccctaatcca acgtcatgga gcgtcaagag ttttctttct attgaagaga tgtttgaaaa
      601 gaattcaagt gcctcttcaa cagtcatatt gaggacatct gaaattgtct tgcctttgta
      661 tgttatctcc agggtttcta aattgtacct ttttccttta cattcatcac aagtcacata
      721 cacgtcagct agaaactgca tttcaattct cttaacccca gctccctcac atgaatcgca
      781 tcgtccacca ggaacattaa atgaaaatcg accgggcttg tatcccattt ctcgggcttt
      841 catggttttt gcaaagatct ctcgtatggg accaaaagca ttcacgtatg ttgctgtgtt
      901 agacctaggt gtccttccaa taggagactg gtcgattcct attactttat ctaggttttg
      961 aagacctgta atcttttcat gagagccggg cttttcctta gatgagtaaa agtgatttga
     1021 cattgctttg aagagtattt catttacaag agttgatttt ccagatcccg atacaccagt
     1081 tactgtcgtc atacacccta gag
//
LOCUS       DATLQL010000652         3058 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1202109, whole genome shotgun sequence.
ACCESSION   DATLQL010000652 DATLQL010000000
VERSION     DATLQL010000652.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3058)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3058)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3058
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1202109"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1692)
                     /locus_tag="VNB68_06525"
     CDS             complement(<1..1692)
                     /locus_tag="VNB68_06525"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004748 - ribonucleoside-diphosphate
                     reductase activity, thioredoxin disulfide as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobalamin-dependent
                     ribonucleoside-diphosphate reductase"
                     /protein_id="HVD37038.1"
                     /translation="MAGLTEFNNSNENLIIHIRKRDGRIVAFVYSKISNAIYKALVAT
                     GKADYPLAERLANKVIQKMVQQGYGATEKTAIPSVEDVQDMVESILIEEGLSETAKAY
                     ILYRHERRKVRDEKVKILNKKDLDEVDKAFEVNSLRVLAARYLLRDDSNEIVEGPKQM
                     FERVAILVAIPDILHDPRCFDLAAGHVQSIEEAEKYYAKIDDFHLKLKIGEYYLNKYH
                     FDSMIRHYIDLTKCGQMKVSFKDLLRMVAQGALSIYEERIREYYNLMVSRDFLPNTPT
                     LMNAGARLGQLSACFVLDMPDDMYKIMKSSTDAAMIFKSGGGVGINYSDLRPEGDIVA
                     STSGVASGPTSFMRIIDTITDVVKQGGKRRGANMGILEAWHPDIEKFVTAKTKPGMFE
                     NFNVSVGVWEDFWQSLVNKDNHKYTLRNPRTHEPIKQIDSHQLIDLIAFSAWKSAEPG
                     VIFFDNINKYNPCISAKGGPLRATNPCGEQSLYPYESCNLGSINLANFVKRKADGMYE
                     FDWQRYEQAIRLSCRFLDNIIDVNKYPVDEIDINTKLTRRIGLGIMVIADLLFLLR"
     gene            complement(1816..>3058)
                     /gene="nrdD"
                     /locus_tag="VNB68_06530"
     CDS             complement(1816..>3058)
                     /gene="nrdD"
                     /locus_tag="VNB68_06530"
                     /EC_number="1.1.98.6"
                     /inference="COORDINATES: protein motif:HMM:NF024984.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008998 - ribonucleoside-triphosphate
                     reductase activity [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase"
                     /protein_id="HVD37039.1"
                     /translation="ENNKDFRTIFPLLVSLLSREATTELVLEGVIPTLLEQTEGPEEV
                     VSIFSKGLIASSVAPSFSASRFPITTLPIPADRYDIKFIDAVIDGYRRYVDSTPIPRI
                     GLSLNYNKDSNKLTDHSELIASTVRAGGMISILKDGLRANSGACKSIGNKNSSTVATL
                     QSLSINLPRLAYQSNKDETYFRARLALMLKPALAAMSIRKKGIEDLIRKGIIPTIASS
                     KFIQLMTTNIIINLTGIIESVYDILGYDINSGAVEVLQKVMKTAVDVAADQGKHFGED
                     SIGVAMLHDDSAMRFAGLDSDKYGKISLLTQQNTPNYSQGITLDGKDLLFKNNNSYSL
                     IEDCVSLDKLLNGGISVTLDLSNLSSNTEAKSAIESASNLQFFCPVRKLMICDSCGRR
                     SSTQSIEKCEFCASPYLIPML"
BASE COUNT          878 a          652 c          527 g         1001 t
ORIGIN      
        1 cctaagcagg aacaaaagat cagcaatcac catgatgcca aggccaatcc gtcgtgttag
       61 tttcgtatta atatcaatct cgtcaacagg atatttgttc acatcaatga tattgtctaa
      121 gaacctacaa gaaagtctaa ttgcctgttc atacctttgc caatcgaact cgtacattcc
      181 atcagctttg cgttttacaa agtttgcaag gttaattgac ccaagattac atgactcata
      241 cggatataat gattgctcac cacacggatt tgttgcacgt aacgggccgc cttttgcact
      301 aatgcacgga ttatatttgt tgatattgtc aaagaaaatc acgcccggtt cggcgctctt
      361 ccatgcactg aatgcgatca agtcaattaa ttgatgagaa tcaatttgct ttattggttc
      421 gtgagttctt ggatttcgta acgtatattt atggttatcc ttgtttacga gcgattgcca
      481 aaaatcttcc catacaccaa cactaacgtt aaagttctca aacattccag gctttgtttt
      541 ggcggttaca aatttttcga tatccggatg ccatgcctca agaataccca tatttgcacc
      601 gcgcctcttc ccaccttgct ttacaacatc agttattgta tcgataattc tcataaatga
      661 cgtcggaccc gacgctacac cagatgttga ggctacaatg tcaccctctg gtcttaggtc
      721 agagtaattt atccccactc ctccgccaga tttgaagatc attgccgcat cggttgatga
      781 tttcatgatc ttgtacatat catctggcat atcaagaaca aaacatgctg atagttgacc
      841 aaggcgtgct cctgcattca ttagcgtggg agtgttagga aggaaatctc tagaaaccat
      901 caaattataa tactccctaa ttcgttcttc atatattgag agtgcacctt gggctaccat
      961 tctaagtaaa tctttaaagc tgactttcat ttgtccacat tttgtaaggt caatatagtg
     1021 gcggatcata gaatcaaagt gatacttatt aagataatat tctccgatct ttagcttcag
     1081 atgaaaatca tcgatcttgg catagtattt ttctgcttct tcaatacttt gaacgtgtcc
     1141 tgctgctaga tcgaaacacc gtgggtcatg caaaatatca ggaatcgcta ctaggattgc
     1201 tactctttca aacatttgct taggtccctc tacaatttca ttgctatcgt ctcttagaag
     1261 ataacgtgct gccaagactc tgagggaatt tacctcaaat gccttgtcta cttcatcgag
     1321 atccttcttg tttagaattt tcactttctc gtcgcgaact ttacgtcgct catgcctata
     1381 cagaatatag gcttttgctg tttcagacaa accttcttca ataagtatgg actcaaccat
     1441 atcttgaaca tcttctacgc taggaattgc agttttttca gtagccccat aaccctgctg
     1501 gaccattttt tgtattactt tatttgccag tctctctgct aatggataat ctgctttgcc
     1561 agtggccaca agtgctttat atattgcgtt cgatatcttg gagtaaacaa aggcgactat
     1621 tctgccatct ctttttctta tatgtatgat taaattttca tttgaattgt taaactcagt
     1681 aagtcctgcc accagtccta tacaagggga tcgacttaaa agcattagct ttctaaaaaa
     1741 taatacatct aaggtgtaag tgcctaccct tctctaaaaa tatattatat ttctcttaaa
     1801 tcactatact ctaatctaca gcataggtat caaataaggc gatgcacaaa attcacattt
     1861 ttcaatactc tgggtgcttg accttctccc acagctatca catatcataa gttttctcac
     1921 agggcagaaa aattgaagat tcgacgcaga ttctattgca ctcttcgctt ctgtattaga
     1981 tgaaaggttg ctcaagtcaa gagttaccga aatcccacca tttaacagtt tgtctaacga
     2041 cacacagtct tcaattaaag aataagaatt attattttta aacaataagt cttttccgtc
     2101 caatgtgatc ccttgggaat aattgggtgt attttgttga gttaataaag aaatcttacc
     2161 atatttatca gaatctaatc ctgcaaatct catcgcacta tcatcgtgta acatagcaac
     2221 tcctatagaa tcttctccaa aatgttttcc ttgatctgca gctacatcaa cagcggtctt
     2281 catcaccttt tgaaggactt ctacagcgcc actgttgata tcatatccta aaatatcgta
     2341 aaccgattct attatgcccg tgagattaat tataatatta gtggtcataa gctggataaa
     2401 cttactactg gcaattgttg gaatgatacc ctttctgatg agatcttcta tgcccttctt
     2461 tcgtatcgac attgctgcaa gtgcaggttt aagcatcaga gcaagccttg cccggaaata
     2521 ggtttcatct ttatttgatt gatatgcaag cctaggaaga ttaatagaca gagattgtag
     2581 agtcgcaaca gtgctggaat tcttgttacc tattgattta catgcaccac tgttagccct
     2641 taatccgtct tttaaaattg agatcatccc accagcacgt actgttgatg caataagttc
     2701 tgaatgatct gtaagtttat tgctatcttt attataattt aaagataatc ctatccttgg
     2761 aataggtgta gaatctacat atcttctgta gccatcaata accgcatcta tgaatttaat
     2821 atcatatctg tcagcaggaa tgggtagcgt agtgattgga aaccttgacg ctgaaaatga
     2881 gggagctacc gaagatgcta taagcccctt cgaaaagatc gaaacaactt cttcgggtcc
     2941 ttcggtttgc tccagtagag tgggaataac cccctcgagt acaagttctg tggtggcttc
     3001 tctgctcaga agcgatacta atagtggaaa aattgttcta aaatctttat tattctct
//
LOCUS       DATLQL010000653         1056 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_513573, whole genome shotgun sequence.
ACCESSION   DATLQL010000653 DATLQL010000000
VERSION     DATLQL010000653.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1056)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1056)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1056
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_513573"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(641..>1056)
                     /locus_tag="VNB68_06535"
     CDS             complement(641..>1056)
                     /locus_tag="VNB68_06535"
                     /inference="COORDINATES: protein motif:HMM:NF012428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HVD37040.1"
                     /translation="VVYDKLFDPDEPGVLSSTWGAGSRIDMAVGCKIIEAIESQGLLR
                     NAQKQGENLLRGLGELVGSGDVIDVRGIGLMIGIELNQKSTRDRIVRILFKNGLLVLP
                     AGKRSIRIMPPLIITADEIDNGLSILHDAFGRRIK"
BASE COUNT          302 a          259 c          158 g          337 t
ORIGIN      
        1 aattttcgtt agtggccgca gccacatcct ccatgtccaa cttcgtgacc gtgctcgtga
       61 ctctgacctt tagccgaacc ttcgaggcag gacggacaca atgtattccc gttttcagac
      121 atgaacatag ttccacaagt accacacttt agtttttgaa gaccttccat aagctcatgg
      181 aaatatcatc cataattaat gcctttctga ctatgaaaat gctccaatct agtcattctc
      241 tagcaacatc ggagtatgac caagcctctg tgattaatag aatttgaagt atcttttctt
      301 ccaaaatata ctgagcacta atattttttc tttggtgtcg aagagaattt ggatcttcct
      361 ccatatttcc tcgcctaggt ttctcagata tttgtatgaa tgccaataat tattttgccc
      421 ggagatcaaa cctagtgtgt tcacaggatt aaagtacgac ccttaacatg tgcttaattt
      481 gaccaggtct ctacagtaaa aaacacatga cagattcaat caccaacagt gatgaccata
      541 cgtaaagttc gaaggtatac ttattttagc taccagtcat tttactaatc caaatttatt
      601 ttgtgctcct aaactagtaa ctaatccaaa tgaggtacca ttattttatt cttctaccaa
      661 atgcatcatg cagaatcgac aacccattat ctatttcatc cgctgtgata attaatggtg
      721 gcattattct aattgatctc ttgcctgcag gcaaaaccag aagaccattc ttgaaaagga
      781 tccttactat tctatctctt gtgctttttt gattcaattc gataccgatc attaatccga
      841 tgcctctaac atcaataaca tcgccgcttc ctaccaattc gcccaatccc ctcaacaaat
      901 tctcaccctg tttttgcgca ttcctaagaa gaccttgcga ttcgatcgcc tctataattt
      961 tgcatcctac tgccatatca attctgcttc cagctcccca agtgctggaa agcactcctg
     1021 gctcatctgg atcaaacaat ttgtcataaa caaccg
//
LOCUS       DATLQL010000654         1094 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_332500, whole genome shotgun sequence.
ACCESSION   DATLQL010000654 DATLQL010000000
VERSION     DATLQL010000654.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1094)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1094)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1094
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_332500"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..746)
                     /locus_tag="VNB68_06540"
     CDS             complement(<1..746)
                     /locus_tag="VNB68_06540"
                     /EC_number="3.2.1.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="sialidase family protein"
                     /protein_id="HVD37041.1"
                     /translation="MGVMFAIALAATMTGPTPMPLQLQSAYAFVIRETDDDIAASGNN
                     VYVLWSSNKTGKWEVMIRISNDNGKSFADEVNLSNTSKSNSFHADVATFGNDIYVSWL
                     NNNTGNLETYTRTSADGGKIFGPILAINGTGALPQKSRIIEIPQADVLDDSEEDTHIA
                     TSGERVYIVSWDKKVGNWEILFAKSTDGGKTFEKTINLSNSADTRSDHAMILVNENNV
                     YLTWWETAKNGTQDLVFRASNDNGSTFGPV"
BASE COUNT          296 a          227 c          191 g          380 t
ORIGIN      
        1 aatactggtc caaatgttga gccgttatca ttacttgctc taaataccag atcctgcgtt
       61 ccgttcttgg cggtctccca ccatgttaaa tacacattat tttcattcac aagaatcatt
      121 gcatgatctg aacgcgtatc agctgaatta ctaaggttaa ttgttttttc aaatgtcttt
      181 cctccatcag tactttttgc gaacagtatc tcccaatttc caaccttttt atcccaagaa
      241 acgatataaa cacgctcacc agacgttgct atgtgagtat cttcttctga atcatccaat
      301 acatctgctt gaggtatttc tataattctc gacttttgtg gtagcgctcc agttccattt
      361 attgcaagta taggaccaaa tatctttcct ccatcagcac ttgtccttgt atatgtctct
      421 aaatttccag tgttattatt aagccatgaa acatatatat catttccaaa tgttgctacg
      481 tcagcgtgaa atgaatttga ttttgaagta ttgcttagat ttacttcgtc tgcaaatgat
      541 tttccattat cgttgcttat cctaatcatt acttcccact ttccagtttt gttgctactc
      601 cataaaacat acacattatt accagaagca gcaatgtcat catcagtttc tcttatcaca
      661 aacgcgtatg ctgactgtag ctgtaatggc attggagttg gtcctgtcat tgttgctgcc
      721 agtgctatcg cgaacataac tcccatggat gattgtaatc tcatctgtat tttagaaaat
      781 gaacctctct atataagtaa atagtctata cgacaggacg gatctagaca aagatctcaa
      841 gacatgttga attataaggt gagttcaaag aataggttgc ggagttaaaa atgatgggag
      901 gttggcgtcg ataaaacgcc actatctaaa ccacttgtct tatccttatg gttgattgcc
      961 tgtgactgtt cctgcgttat cgtgtccttg tagttggtct aggatgtttt gacatctaac
     1021 attttcgtat acaagactga gctgctgtct ggtgaaaact cttcttggaa gcaaatgcct
     1081 gatttgtcag tgag
//
LOCUS       DATLQL010000655         1880 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_868835, whole genome shotgun sequence.
ACCESSION   DATLQL010000655 DATLQL010000000
VERSION     DATLQL010000655.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1880)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1880)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1880
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_868835"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            211..501
                     /locus_tag="VNB68_06545"
     CDS             211..501
                     /locus_tag="VNB68_06545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HVD37042.1"
                     /translation="MKTQHRSRSEIIAAILEVANGNRVRTTEIQFKTYLSYNLLKEYL
                     IMLLEKDLLEYIEGERSFKTTPKGIQLLHVCNDMEELMVAKTSEPTPKIPIY"
     gene            821..1573
                     /locus_tag="VNB68_06550"
     CDS             821..1573
                     /locus_tag="VNB68_06550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37043.1"
                     /translation="MSDKRIYYLSGLLVVISMLTTTILPVNVNIYAQNENISKFTFPK
                     GFLESLQKDVSGHYSNPAFGIEDIVFPEGWHGRQIPTGIGLIASVRPGNQSGDVGDLF
                     GGGGGGGGGTNPASASIQPLMLLQVLNNSAISKLGLPEFSISKDCKELAANSTSIIDG
                     KSFHVSTIECPFSSASADLGINLSAAAPSKEFNVKGIGQSKIYEYKTTDRTYRLALLV
                     SSPLFGSSQEKPDITKYIPLVDATAKSLKLKV"
     gene            complement(1634..>1880)
                     /locus_tag="VNB68_06555"
     CDS             complement(1634..>1880)
                     /locus_tag="VNB68_06555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37044.1"
                     /translation="RTLIKGNNIQYSCINLQHKNMLSNIENCYLTLQKQCKGILDSDG
                     CTFRKSENKGEEKEERVRRIERRKKKRYRSEVPAAPQ"
BASE COUNT          609 a          346 c          352 g          573 t
ORIGIN      
        1 ttctccgggt tcaggaagtt gttcagcaaa tattacaata tcccaattta tagctccgac
       61 aacaatctgt ttcgcaaatg tcataatcag accaaaaagg ggagcttaca aatagattgc
      121 tgctgttaaa taatgttcta gaacatatta ctataagcta catgaaatag aattaaatag
      181 atgttttcta ctctacactt tagcatctta atgaagactc agcacagatc tagatctgaa
      241 ataattgcag ccattttgga ggttgctaat ggtaatagag taagaacaac tgagatccag
      301 tttaaaacat atttgtctta taatctattg aaggaatact taataatgtt gcttgaaaag
      361 gacctgttag agtatatcga aggagaaaga tcctttaaga caacgccgaa aggaatccag
      421 ctgttacatg tatgcaatga catggaagaa ttaatggttg caaagacatc agaacctaca
      481 ccaaaaattc caatctacta gaattgtaac attctaaaag gatgtaaggt tgtgaaaatt
      541 taatcatatt cgatcaaagg atatggaata tactttactg gctttaataa aatagtgaaa
      601 tcgaattccg attcagatga gtgtacatat tatgtaccat acggtaacag taccttaccc
      661 acccaccaat gaagtttggt catattcaaa gaattacaat ttctttatac agcacactta
      721 tcagaccatg tggctttgtc agccaggtta caggaagtcg aagaaggaca atgagctaga
      781 tactctaata tatataacac taatatcatg agaacctaca ttgagtgaca aaagaatcta
      841 ctacttatct ggtttactcg tggtcatatc tatgctcaca acaacgatac tgccggttaa
      901 tgttaatata tatgcgcaga acgaaaatat tagcaaattt acgttcccta aaggattctt
      961 agagtcatta caaaaagatg tcagcggaca ctactctaac ccggcatttg gaatagaaga
     1021 tattgtattt cctgagggat ggcatggacg tcaaatacct actggaattg gtcttatcgc
     1081 atctgtgcgt cctggaaacc agagcggaga tgtaggtgac ttgtttggtg gtggtggtgg
     1141 tggtggtggt ggaacaaatc ctgcttctgc ttctatacaa ccacttatgt tattgcaagt
     1201 tctcaacaat tcagcaatca gcaaactagg gctccctgag ttttcgattt ccaaagattg
     1261 taaagaattg gctgcaaact caacttctat aattgacggt aagagttttc acgtatctac
     1321 gatagaatgt cccttctcat ctgcttctgc tgatctgggc attaacttat ctgccgctgc
     1381 accatctaaa gaattcaatg tcaaaggaat aggacagtcc aagatatacg aatataagac
     1441 aacagacaga acttatagat tggcgctttt agttagcagt ccattatttg gttcttcgca
     1501 agagaaaccc gacatcacta aatacattcc gctagtagat gcgacagcga aaagcttgaa
     1561 attgaaagtt tgatatagag aatgattgtc atcgcataag ggttgcgcta aggtatatga
     1621 atcgaagcaa gatttattga ggagctgcag gaacttcaga tcgatatctt ttcttctttc
     1681 ttctctcaat tcgtctcacc ctttcttctt tttcttcccc tttattctca gatttcctaa
     1741 aagtgcaccc atcggaatcc aaaataccct tacactgttt ttgcagcgtc aagtaacagt
     1801 tctcgatatt ggaaagcata tttttgtgtt gcaagttaat gcagctgtat tgaatattat
     1861 tgcctttgat tagagttctt
//
LOCUS       DATLQL010000656         2162 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_514790, whole genome shotgun sequence.
ACCESSION   DATLQL010000656 DATLQL010000000
VERSION     DATLQL010000656.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2162)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2162)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2162
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_514790"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..492)
                     /locus_tag="VNB68_06560"
     CDS             complement(<1..492)
                     /locus_tag="VNB68_06560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin biosynthesis central domain-containing
                     protein"
                     /protein_id="HVD37045.1"
                     /translation="MAVLAITRHGIEIARRIKQRMPEVQIYVPAKHNDGGDDVIWFSE
                     QSTQLVGNLFKTYDALICIFSLGAVIRMVAPHLIDKKSDPAVLVIDDGANNVISALSG
                     HLGGANALARLVASFLDAQPIITTAADVNETIPVDLVGREFGWTIENFENVTKVSALM
                     VNEE"
     gene            624..2144
                     /locus_tag="VNB68_06565"
     CDS             624..2144
                     /locus_tag="VNB68_06565"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HVD37046.1"
                     /translation="MSVLLVLIPLALSAYTHLWNPTGFPNIFYDEGVYMRRAMHVMEG
                     LGPQEAYYYDHPFFGQIFLGTVLKIIGYPESLNPSADLHSIESLYQVPRVLMGILAVI
                     DTFLIYKITERMYNRNVALFASVIFAVMPATWFTRMILLDSILLPFLLLSILLAVYTS
                     KSKSEKINTIKNNNNILIVFSGIFLGLAIFTKIPAFTMIPLVAFLIYQNNKRSLKTLG
                     LWFVPVILIPLLWPAQSIVVGAFNSWTNDVLWQINRENAGLPWIVFLLAITDPLIFVV
                     GFASIAYSFIRRDYLILLWTLPFIAFLAAMGYANFFYWIPILPALCIGAGKLLFDILQ
                     KSKKISQKVLRVAMLLSIIIYGVTSSTLLIVTNVTSAQFESAAYVAGYLEEGTGAEDA
                     EKNNPTVIISNPIYSWILKYVFDKDHVLSDYRDMLYFPVDTAKSKVLLIDDPRFMLDI
                     GNEDNQLLHELYSNTSTIATFKGKVTNFDLGLFPYTSMVENYEGSEVKIRVNNSNS"
BASE COUNT          608 a          447 c          410 g          697 t
ORIGIN      
        1 ttcttcattc accattaatg cacttacctt ggtcacgttc tcaaaatttt caattgtcca
       61 accaaactct cttcctacaa ggtcgactgg aatggtctca ttgacatctg ccgcagttgt
      121 gattatcggc tgtgcatcaa gaaatgaagc tactaacctt gcaagtgcgt ttgctccccc
      181 gagatgtcct gacagtgcgc ttatgacatt atttgccccg tcatcgatga ctaggactgc
      241 agggtcgctc tttttatcaa taagatgagg cgccaccatt ctgatgaccg ctccaagaga
      301 aaatatgcag atcagcgcat cataagtttt gaaaagattg ccaacaagct gtgtgctttg
      361 ctccgaaaac cagataacgt catcgccgcc atcattatgc tttgctggca catagatttg
      421 cacttcgggc atcctttgtt ttatcctacg tgctatttcg atgccgtgcc tcgtgatggc
      481 aagaacggcc atttttgtaa ccataaggca ataatggcag atatttaagg ggaaataacc
      541 ttttgcatgc cagcaaacga ttatagtctc atgttttgtt gagtagatag agtttgggtc
      601 ttctctctag gcaggtatac tctatgtcag tgttacttgt cttgatacct ttagcattat
      661 ctgcttacac tcacttatgg aaccctacag gctttcctaa cattttctat gatgaagggg
      721 tctacatgcg aagagctatg catgtcatgg aaggtcttgg gccccaagag gcctattatt
      781 atgatcaccc attttttgga caaatctttc tgggcactgt actaaagatt attggatatc
      841 cagaatcatt gaatccttct gcagacctgc attcaattga atcgctctat caagttccca
      901 gagtcttgat gggaatactg gcagtaattg atacttttct catctacaaa atcacagagc
      961 gtatgtataa cagaaatgtt gccctctttg cctcagttat attcgcggta atgccagcaa
     1021 catggttcac tagaatgatt ttattagatt ctattctttt gccattcctt ctcctttcaa
     1081 tactgctggc ggtttatact tcaaaatcaa aatctgaaaa aatcaatact atcaaaaata
     1141 ataataatat tctgattgta ttctcaggaa tatttctcgg cctagccatt tttacaaaga
     1201 ttcctgcatt taccatgatc ccattggttg ctttcctcat ttatcagaat aacaagagaa
     1261 gcctaaaaac tctgggtcta tggtttgtcc ctgtgatatt gatccctcta ctctggcctg
     1321 ctcagagtat agtagttggt gcttttaact cttggacaaa tgatgtgcta tggcaaataa
     1381 acagagaaaa tgcaggactg ccttggatcg tattcctttt agcgattact gatccgctaa
     1441 ttttcgtagt gggatttgct agcattgctt attctttcat aagaagagat tatcttattc
     1501 ttttatggac cctcccgttc atagcatttc ttgctgctat gggatatgct aacttctttt
     1561 attggatccc catattgcca gcactatgta taggagctgg taaactcttg tttgatatct
     1621 tgcaaaagag caaaaaaatt agtcaaaagg tgcttagagt tgccatgctt ttatcgatta
     1681 ttatttatgg agtaacaagt agcacgctcc tcattgttac gaatgttaca tcggctcaat
     1741 ttgaatcggc tgcttacgtt gctggctatt tagaagaagg aacgggagct gaggacgctg
     1801 aaaaaaataa tccaactgtc attatttcaa accccattta ttcatggata ctcaaatatg
     1861 tattcgacaa ggaccatgta ttatcagatt atcgagatat gctttacttc cctgtggaca
     1921 ctgctaaaag taaagttctt ctaatagatg atccaagatt catgctcgat atcggaaatg
     1981 aggacaacca actactccat gagctttata gcaataccag cacaattgca acattcaaag
     2041 gcaaggtgac taactttgat ttgggccttt tcccttatac cagcatggta gagaactatg
     2101 aagggagtga agtcaaaata agagtgaata attcgaattc ataaggtttt taaaactcag
     2161 at
//
LOCUS       DATLQL010000657         2559 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2640732, whole genome shotgun sequence.
ACCESSION   DATLQL010000657 DATLQL010000000
VERSION     DATLQL010000657.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2559)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2559)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2559
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2640732"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1069)
                     /locus_tag="VNB68_06570"
     CDS             complement(<1..1069)
                     /locus_tag="VNB68_06570"
                     /inference="COORDINATES: protein motif:HMM:NF014103.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37047.1"
                     /translation="MLSEISEIIEGDTRILVPSASLTEKIPSKTPAFFNPVAKWNRDI
                     SVLAYKSFSTLKTQDYVSFADCLSGVGARGLRVGVEVPSVESVYMNDINPIALEFARK
                     AAELNSIQGKCYFHRSEVCSFLQSNSQGSQKNRYDIVDLDPFGSPSPYLDCVLRAVND
                     RGMISITATDTAVLCGVYPKVCYRRYHGYPIRSEYTNEIGIRLLISLIAFTAARLDLN
                     ILPLFSHTNLHYMRTYVKISVSNSEANELYSKIGYVIHCFNCGHREIWDVESNPRICK
                     VCSSKCYIGGPLWKEPLNDRGFLESMAQVIPTLGVFQRTPGLRRSMDNLLSTGIEEVQ
                     EPYYFHTDYIASKLKTSPLALS"
     gene            1149..1859
                     /gene="rnhB"
                     /locus_tag="VNB68_06575"
     CDS             1149..1859
                     /gene="rnhB"
                     /locus_tag="VNB68_06575"
                     /inference="COORDINATES: protein motif:HMM:TIGR00729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HVD37048.1"
                     /translation="MNKWKGKNHTRFPLRDLLIGGVDEAGRGSLVGPLIVVGISVRFS
                     QLDELRKIGIKDSKLLTPLSRRRMLSSMMDYVESVCICKLSPTDVDFGVLFSSLNVLE
                     AQAMAAIIEDIVPHIAYIDSCDVNPERYGERVAGFLSTNRPKKIISSHHAEATSLAVA
                     AASILAKVTRDYEITRIREQYGEIGSGYPSDRKTVEFIKNWIVEKKILPPFVRKSWKP
                     MKALLNREHCITLDQFVL"
     gene            complement(1844..>2559)
                     /locus_tag="VNB68_06580"
     CDS             complement(1844..>2559)
                     /locus_tag="VNB68_06580"
                     /inference="COORDINATES: protein motif:HMM:NF003276.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="fibrillarin-like rRNA/tRNA
                     2'-O-methyltransferase"
                     /protein_id="HVD37049.1"
                     /translation="GKRRKDTIREEIGLEDESISNITLDGRQHLATLNLIRGNTVYGE
                     RLVVRKGNEYRIWDPFRSKLAAALTKGLKNFHLPVRSNVLYLGASTGTTVSHLSDIVG
                     QIGKIFAIESSSRVARELIFNVASKRQNVTPIIADARKPRSYFSVFDTIDLVYCDIAQ
                     PDQTQIAIDNCRVYLKTGGVLLLVIKTRSIDVTMDPRKVIKQEVKKLEENSFVVTQRV
                     DLDPFDKDHAMVYAIYNTN"
BASE COUNT          757 a          524 c          502 g          776 t
ORIGIN      
        1 ctgatagagc aagaggactt gtttttaatt tcgatgcaat ataatcagta tggaagtaat
       61 aaggttcttg aacctcctca atacctgtgg atagtaagtt gtccattgat ctgcgcagac
      121 caggtgtcct ttgaaacacc ccaagggtag gtatcacttg agccatactt tctagaaatc
      181 ctcgatcatt tagaggctct ttccagaggg ggcctccaat gtagcatttc gatgaacaca
      241 ctttgcaaat tctaggatta ctttcgacat cccatatttc acgatgtccg cagttaaagc
      301 agtgaattac atacccgatc tttgaataaa gttcatttgc ttcagaattg ctgacactta
      361 tttttacgta tgttctcata taatgtaaat tggtgtgact aaacaacggt aaaatgttca
      421 gatcgagcct agccgcagta aatgctatca atgatatgag tagcctaatc ccaatctcgt
      481 tggtgtattc actcctgatc ggatatccat gataccgacg ataacagact tttggataaa
      541 ctccacagag aactgccgta tccgttgcag tgattgatat catacctctg tcattgacag
      601 cacgcaaaac acagtccaaa tatggcgatg gactcccaaa tgggtccaag tctactatat
      661 cgtatctatt cttttgactg ccctgagaat ttgactgtaa aaaactgcat acttcgctcc
      721 tatgaaaata acattttcct tggattgaat ttaattcggc tgcctttctt gcaaattcca
      781 atgcaattgg attgatatca ttcatgtata ctgattctac cgatggaact tcgacaccga
      841 cgcgtagacc tctggcacct accccggaaa ggcaatctgc aaaggatacg taatcctgtg
      901 ttttcaaagt ggaaaagctt ttgtaagcaa ggaccgagat atctctgttc cacttcgcca
      961 ctgggttgaa aaacgctgga gttttggaag ggattttttc cgtcagtgaa gcgctcggaa
     1021 caagaattcg ggtatcacct tcaattattt cggatatttc agacagcaac ggttagtttt
     1081 ctaccaacag ccggcttagt aaggttatca tttaaaaaag gaggccgaaa taagatcgaa
     1141 gtagaacttt gaataagtgg aaaggaaaaa accatactag gtttcctttg agagatcttc
     1201 tcataggagg ggtggatgaa gcaggacgag gatcattggt gggtccttta attgttgtag
     1261 gaattagtgt cagattctct caattagacg agctcagaaa aatagggatc aaagattcca
     1321 aattgttgac accgcttagt cgtcgtcgta tgctgtcaag tatgatggat tatgttgaat
     1381 cagtatgcat atgcaaactg tctccaacag atgtagattt tggtgtgcta tttagcagcc
     1441 taaatgtatt ggaagcccag gcaatggcag ccattattga agatattgtc ccccatatag
     1501 catacattga ttcctgtgat gtaaatccag agcgatatgg ggaaagggta gcaggatttc
     1561 tgtctacaaa taggcccaaa aagattatct cctcacatca tgcggaagca acaagtctcg
     1621 ctgtggccgc tgcatcgatt ctagctaaag ttactcgtga ttacgaaata acaagaatcc
     1681 gtgagcaata tggtgaaata ggtagtggtt acccctcaga tagaaaaacc gtagaattca
     1741 taaagaattg gatcgttgaa aaaaaaattc ttccgccttt cgtcagaaaa tcttggaagc
     1801 caatgaaagc gttactcaac agagaacatt gtataacttt ggatcaattt gtattgtaaa
     1861 ttgcatatac cattgcgtgg tctttatcaa atggatcaag gtcgaccctc tgcgtcacaa
     1921 caaaagaatt ctcttccagc ttcttaactt cctgtttgat cacctttcta ggatccatcg
     1981 tcacatcgat gcttcttgtt ttaataacta ataacaaaac gccacctgtt ttgagataca
     2041 ctctacaatt atcaattgcg atttgtgttt gatctggctg tgcaatatca caataaacta
     2101 aatcaatcgt gtcaaatacg gaaaaatagc ttctaggttt tctcgcatct gctataattg
     2161 gagtaacatt ctgtctttta gatgcaacat taaaaataag ttctctagct actctggatg
     2221 aggattctat ggcgaatatt tttcctatct ggccgacgat gtctgataga tgactaacgg
     2281 tagttccagt agatgcccca agatataaaa cattactacg cacagggaga tgaaaattct
     2341 taaggccttt cgtaagtgcc gctgccaact tgctcctaaa ggggtcccat attctatatt
     2401 cgttaccttt cctaacaacc aacctttcac cgtatacggt attccctctg atcagattta
     2461 gagttgcaag atgttgacga ccatctaaag ttatattgct aatgctctcg tcttccaaac
     2521 cgatttcttc tcttatcgta tcctttcttc tttttccat
//
LOCUS       DATLQL010000658         1283 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2469550, whole genome shotgun sequence.
ACCESSION   DATLQL010000658 DATLQL010000000
VERSION     DATLQL010000658.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1283)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1283)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1283
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2469550"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(39..323)
                     /locus_tag="VNB68_06585"
     CDS             complement(39..323)
                     /locus_tag="VNB68_06585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37050.1"
                     /translation="MARWFKDRSTRNDEVEQLAQAIDDQSAEQKKMLEIFNIAMSNFA
                     TDRSLETCLDALNSSMQIANIRGKLVQSYEYYARLLEQEIIGLRKLQGKQ"
     gene            complement(669..>1283)
                     /locus_tag="VNB68_06590"
     CDS             complement(669..>1283)
                     /locus_tag="VNB68_06590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37051.1"
                     /translation="ECYIVQYSGLLDFEEASNQWFRGPVKAMTTDQLQRAINEHLGVT
                     GDNGKFRMTVAKEGMVWTKKEEQEQQRQSSDENAPIGKVLEIESLQKYIVKIENVDTQ
                     HRLKLTVEDSVNRFNFEFVRPTNDGNNGDIVYAQGVKGMMTKGPELKVEIVPSQSDEA
                     ASTVKIRAFRGKKNVFKDDILVSNFEAQRLKRFIKENFGVSARK"
BASE COUNT          324 a          283 c          206 g          470 t
ORIGIN      
        1 taaacagtgc tcagttcatt ggatctttgc agagtagtct actgctttcc ttgtagtttc
       61 cttaaaccta taatctcctg ttcgagtaac cttgcataat actcgtaaga ttgaaccagc
      121 ttccctctga tatttgctat ctgcatagag ctatttaatg cgtccaggca agtttcaagg
      181 gatctatctg ttgcaaagtt gctcattgct atgttaaaga tctctaacat cttcttctgt
      241 tccgcacttt ggtcatctat tgcttgtgca agttgttcta cctcatcatt tcgagtgctc
      301 ctatccttaa accatcttgc caatatttta taagaggtgg actacgaaaa taaaatttac
      361 gatgggtgct actgttttat attatctaag gtattccatg agcgtatatc tattgtcata
      421 catagaacgt taacgatgta gtaggcagat agctaacttg tagggcttga ttgaaatatc
      481 ttccttctcg caatcttttt ttgtgatatc acgattaaaa ggagcatggt gatttagctc
      541 ctcacccctt tctgtcctaa cctgataata atatgtagac tatgaatgga atcatcatcc
      601 agaccacttt atctaaagaa gaatctgatc taaaaagatt tttgatttct aaaagcttcc
      661 ttcatcacct attttctcgc gctgacgccg aagttttctt ttatgaatct cttcagtctt
      721 tgtgcctcaa aattacttac aagtatatcg tctttgaata cgttcttctt tcctcgaaat
      781 gcccttattt tgacggtgga agctgcttca tccgactgtg atggaactat ctccaccttt
      841 aactcgggtc ctttggtcat cattcctttc actccttggg catatacgat atccccatta
      901 tttccatcat tagttggtct aacaaattcg aagttaaacc tgttaaccga atcttcaact
      961 gtaagtttca atctatgctg tgtatctaca ttttcaatct tcacaatata tttctggagg
     1021 ctttcaattt caagtacctt gcctatagga gcattttcat cagaggattg gcgttgttgt
     1081 tcttgctctt ctttcttagt ccaaaccatt ccttctttgg ccactgtcat tctaaatttg
     1141 ccattatccc cagtgacccc aagatgctcg tttattgctc tttgaagctg gtcagttgtc
     1201 attgccttta caggacccct aaaccattga tttgatgctt cttcaaagtc aagcagtcca
     1261 ctatattgaa ctatatagca ttc
//
LOCUS       DATLQL010000659         1041 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1753588, whole genome shotgun sequence.
ACCESSION   DATLQL010000659 DATLQL010000000
VERSION     DATLQL010000659.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1041)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1041)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1041
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1753588"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1041
                     /locus_tag="VNB68_06595"
     CDS             <1..>1041
                     /locus_tag="VNB68_06595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HVD37052.1"
                     /translation="QRVNSLIDSDSSEIRNSYDNSENPKLFPSECRFVAEKTLLIGKE
                     KIYSNKILIAAGTRPFIPQIKGLETTHYLTSDQALRLNKQPKILTIIGGGFIAAELGH
                     YFGSLGTVINIIQKRKSLIPTEDEEISKKFTEIFSTKYNVHLECTAELVTKKGDKFVV
                     LAKSSGSNKTLEIESDQLLIATGRVPNSDTLELTRTGVDVDENGFIKVDKTLATNVEG
                     IFALGDIIGRYQFRHSANLEAQYAFYNIFNQKKKIQVDYSAMPHAIFSSPQVAGVGYT
                     EQDLKKTSKKGYDKSIHRYIDTAMGKAIEEREGFVKFLVSKENRKILGCHIIGSQASI
                     LIHEVLVAMKSG"
BASE COUNT          386 a          184 c          206 g          265 t
ORIGIN      
        1 ccaaagagta aatagtctta tagattcaga ttcaagcgag ataagaaact cttatgataa
       61 ttctgaaaat ccaaaattat ttccctctga gtgcaggttt gttgctgaaa aaaccttatt
      121 gataggcaag gagaaaattt attcaaacaa aatactaatt gccgcaggaa ccagaccctt
      181 cataccacag attaagggct tagaaacaac acattacctt accagcgatc aagctcttcg
      241 tcttaacaaa cagccgaaga tcctaaccat cataggagga ggatttatag cggctgagct
      301 tggacactac tttggatctc ttggaacagt aatcaacatc atccagaaaa gaaaatcttt
      361 aataccgact gaggatgagg aaatatcaaa aaaattcact gaaatcttct ctacgaaata
      421 caacgtacat ttggagtgta cagccgaact agtaactaag aaaggtgaca aatttgttgt
      481 acttgcaaag agttcaggat ctaataaaac tttggaaatt gaatctgatc aactattaat
      541 agcaacaggg cgtgttccaa attccgatac acttgaatta acaaggacag gagttgatgt
      601 cgatgaaaat ggattcatta aagttgacaa aactcttgca accaacgtag aaggtatctt
      661 tgcattgggt gatataatcg gcaggtacca attcaggcat agcgcaaatt tggaggctca
      721 atacgcattt tacaatatat tcaatcaaaa gaaaaaaatt caagtagatt atagcgcaat
      781 gccgcacgca atttttagct ctcctcaggt tgcgggagtt ggctatacag aacaagactt
      841 gaaaaagaca agtaaaaagg gatacgataa atcaatccat cgctatatcg atactgcgat
      901 ggggaaggca atagaagaaa gagagggatt cgtaaaattt ttggtcagca aagaaaacag
      961 aaaaattctt gggtgccata taatcggaag tcaagcttcc atactcattc atgaagttct
     1021 tgtggcaatg aaaagcggtg a
//
LOCUS       DATLQL010000660         1453 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1580281, whole genome shotgun sequence.
ACCESSION   DATLQL010000660 DATLQL010000000
VERSION     DATLQL010000660.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1453)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1453)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1453
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1580281"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..561
                     /locus_tag="VNB68_06600"
     CDS             <1..561
                     /locus_tag="VNB68_06600"
                     /inference="COORDINATES: protein motif:HMM:NF015952.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DUF359 domain-containing protein"
                     /protein_id="HVD37053.1"
                     /translation="RIKEHLLHHSLKMQLKPEIIEELKKPQGILILDEQITLESIKKY
                     LTNAQKVISVGDATTNKLLSFGIVPDVSVIDGYERRKKKASSSTKATIYSLNSQKNVS
                     LFSCVNPPGSISVDSISIIKISLKSKKPVIMEIIGEEDLLALPFFLLARNDSMVFYGQ
                     PGEGMVVVRVTDAVRNKAKELIGMFE"
     gene            1147..>1453
                     /locus_tag="VNB68_06605"
     CDS             1147..>1453
                     /locus_tag="VNB68_06605"
                     /inference="COORDINATES: protein motif:HMM:NF023188.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-3B C(17)-methyltransferase"
                     /protein_id="HVD37054.1"
                     /translation="MNGSIGIICITKHGIEIARRLKSFLPTAQIFAQSKHSDSQGDVT
                     WFDDSASSLVSKVFKTHEALICIFSLGAVIRLISPLLSDKKKDPAVLVIDDKANFVIS
                     "
BASE COUNT          468 a          270 c          291 g          424 t
ORIGIN      
        1 aggatcaaag aacatctgct ccaccacagc ctcaagatgc aactcaaacc tgagattatt
       61 gaagaattaa aaaaacccca gggaattctt attctagatg agcaaataac actagagagt
      121 attaagaaat atctgacaaa cgcgcaaaaa gtaatttccg tgggagatgc cacaacaaat
      181 aagctattat catttggaat agtccctgac gtttcagtaa ttgatggtta tgaaaggcga
      241 aagaaaaagg ctagcagttc aacaaaagca acgatttatt cgctgaattc tcaaaagaac
      301 gtatctttgt tctcgtgtgt taaccctcca ggaagtattt ctgttgactc tatctcgata
      361 atcaagattt ctcttaaaag caagaaacct gttatcatgg aaatcatagg tgaagaagat
      421 ctattggctc ttccattctt tttattggca agaaacgatt cgatggtttt ttatggacag
      481 ccaggggaag ggatggttgt tgttagagta acagatgcgg ttaggaataa agccaaggaa
      541 ttaattggaa tgttcgaata ggaatgaata ctgtaggggc atgatgaggt ggtggctgta
      601 tgaggaagga ttcaaaaatg attaagaaac tacagatttc tgacccctac atttctatgt
      661 gattagaccc cgtctagaaa tgatatcgtc gtatgagatg ctatggaacc aaaatcttga
      721 aaatcctcgg ttcgttaaaa gatacttctg cgatcctgat tagattatta tcgcgaactt
      781 ttcctgtgac aatcgcattc acattttgtc attcttatgt caaacgaaca atcatgatcg
      841 gaattacatg attcccccac tggccattca ccaggacagt cgctatgacg atctctcttg
      901 caaaaaaatg tcaatagcat cagcacatat tccttttcaa ccgttatttt gttgtttata
      961 tttgtgtatg tacttgatcc aacacataag agccctgcac gcttatttca gatgagttta
     1021 tcgtaaaaac taggtaactg cataacacgc gatttactga aaaaatcaaa tgtgagatat
     1081 atttgaaaag tggaggcgta atcacaaaga ttatcttaga gattttaccc ttagtgacgt
     1141 acattcatga acggcagcat aggcataatc tgtataacca aacacggcat agagatcgcg
     1201 cggagactta aatcttttct tcctactgcg caaatatttg cacaatcaaa gcatagcgat
     1261 tcacaaggcg atgtaacgtg gttcgatgac agtgcctcaa gccttgtatc taaggttttt
     1321 aaaactcacg aagccctgat ctgtattttc tcgttgggcg cagttatccg gctcatatct
     1381 ccgctgttat cagataagaa gaaggacccg gctgtacttg ttattgatga taaggctaat
     1441 tttgtaataa gcg
//
LOCUS       DATLQL010000661         1662 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1399260, whole genome shotgun sequence.
ACCESSION   DATLQL010000661 DATLQL010000000
VERSION     DATLQL010000661.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1662)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1662)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1662
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1399260"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(205..365)
                     /locus_tag="VNB68_06610"
     tRNA            complement(join(205..249,284..290,333..365))
                     /locus_tag="VNB68_06610"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(285..287),aa:Leu,seq:tag)
     gene            433..>1662
                     /locus_tag="VNB68_06615"
     CDS             433..>1662
                     /locus_tag="VNB68_06615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HVD37055.1"
                     /translation="MQEHRSRLFGTNGVRGVFGKELTLSSIIDLSYSLASYFKEGSII
                     IGYDGRVSSPILSKLVRSAVNSAGLNVADAGLIPTPCLQYGAKYLGFRGGIMITASHN
                     PPQYNGIKPCASDGVEISRSDELKVEQIYYTKEFSKVDGLGRAYVHTDVIDSYIESTL
                     QLLDIGSIKNRNFTIVMDTGNGAQALVAPFLLTKLGCKVIIINGNINGNFPGRGSEPT
                     SDNLGVLTNMVRKMKADFGVAYDGDGDRAIFCDDKGTVHFGDKTGALLARHLLRTRHK
                     GTEIVCPINTSMVLTWVVEEERSKVTYTKVGSVDVSREMIKRKAVIGLEENGGFMYGK
                     LNQVRDGALATALILEMLAASKNKRLSDMISSLRNVFQYKSKFVCCTKQLANNIINLC
                     LQHGSPKRVETIDGAKIW"
BASE COUNT          520 a          292 c          371 g          479 t
ORIGIN      
        1 ggtttcattc ataataatag gtcaggctaa gaaatcacga ggtaataata agcgcgcatt
       61 atgaatctcg ctagaaaata ctcaccacct aggaagtagt cgccggctta tgcataagta
      121 ttctgtttat agaatgttat atggtaatcc aacaaatagg tgataatttg cgagctatgc
      181 caatttacga caccaattaa ggagtgcggg gggtgggatt tgaacccacg aatccctaag
      241 gaacagggtt gtaggagtat attctttttt ttacctggct cattctaagc ttcgcccact
      301 tttcctctat tatttcgttt aagagaaaga gacctgcgcc gttggccagg cttggcaacc
      361 cccgcctagc gtatttagtt taatcggccg ccaaatttat ctattgttaa ttctgataaa
      421 ttgtaaccaa aattgcaaga acacagatca agattatttg gaactaatgg tgttagagga
      481 gtatttggta aagaacttac ccttagtagc ataatcgatc tttcatactc tcttgcttct
      541 tactttaaag aaggatcaat tattatagga tacgatggaa gggtatcaag tccaattttg
      601 tccaaattgg tgcgttcggc cgtcaattcc gctggattaa atgtggcaga tgcgggacta
      661 attcctacgc catgcctaca atacggagca aagtaccttg gctttcgtgg aggaataatg
      721 ataaccgctt cacacaatcc tcctcagtat aatggcatca aaccatgtgc atcagacggc
      781 gtagagattt cgaggtccga cgagttgaaa gtagaacaga tttactatac aaaagaattt
      841 tccaaagtcg atggtctcgg aagagcgtat gttcacactg acgtaatcga ttcatatatt
      901 gaatcaacct tgcagttgtt agatatcggt agcattaaaa accgtaactt cactattgta
      961 atggatacag gcaatggtgc ccaggcacta gttgcacctt tcttgttaac aaagttaggg
     1021 tgtaaggtta ttattattaa tggcaatata aatggaaatt ttcctggtcg tggatcagaa
     1081 ccgacatcag ataatttagg agtactaacc aatatggtaa ggaagatgaa ggctgatttc
     1141 ggtgtagcat atgacggcga tggggatcgc gccatttttt gcgatgacaa aggaacagta
     1201 catttcggtg ataagactgg agcattatta gctagacatt tgttaagaac aaggcataag
     1261 ggtacagaaa ttgtctgtcc tattaataca tccatggttc tgacgtgggt agtagaagag
     1321 gagagatcga aggtaactta tacgaaagtc ggaagcgttg atgtatcaag agaaatgata
     1381 aaacgtaaag cggttattgg acttgaagag aatggcggtt ttatgtatgg gaaattaaat
     1441 caggtaaggg atggtgccct tgctaccgcc ctcatcttgg agatgctagc agcatcaaag
     1501 aataaaagat tatctgatat gatttcttct ctgagaaacg ttttccaata taaatcaaaa
     1561 tttgtatgtt gtaccaaaca acttgccaat aatatcataa atttatgttt gcagcacggc
     1621 agccctaaac gagttgaaac catagatggg gccaaaattt gg
//
LOCUS       DATLQL010000662         1339 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_691163, whole genome shotgun sequence.
ACCESSION   DATLQL010000662 DATLQL010000000
VERSION     DATLQL010000662.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1339)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1339)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1339
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_691163"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            802..>1339
                     /locus_tag="VNB68_06620"
     CDS             802..>1339
                     /locus_tag="VNB68_06620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37056.1"
                     /translation="MLVVIITIIVDSEVGFVADFIPVQLSSSTGIAVFIAIAIIFAIT
                     QHFILAYVKQSNKETRARALHLDITQIIVSIAQYVLVGMLVIVILQMLTAQQYNLTTL
                     YISYAVSYGLWIVTLAILARAFFSWYRRSGKNVMVLMLTLSMIAYVVNGVTGLATYID
                     FLTQQREVITSADVAYFPE"
BASE COUNT          365 a          241 c          264 g          469 t
ORIGIN      
        1 aagtgaaaca ccagttatga gagtaagtaa tgataatggg gcaacgtttg gacctgtatt
       61 gacactcgct actaatggaa ctattggtgc tttagaacaa gaggaagggg gagacgaata
      121 aggattaagg agttacagtt attagtttgc tgttgtaggg ttgtctctga atcttctact
      181 tagacttcaa cgggcttttc agctagctta actagcagtt cctttttctt tactagtgtc
      241 ctattcaatg cccacttgat ctttacacct ctgcttcatt tcagtaataa catcttgata
      301 ctcggggatc ctattattta tgtgagttat ggaggtttgt tgttgttctg aactttttgt
      361 ttagaaataa tatatcatcg ttgactgggt ctaaagcagg tgtaaaaaaa tgttcgcaat
      421 gtatctgctt gactaatcct tgatttgata tataacaagc cacatttata tggcgagtct
      481 accttatctc gttcagtttc agttttcaat taggtgtcca ttttttgtgc tcaaatgttc
      541 acttcctata ttcacttttc ttgtagatga tgtttctttt tcatgctgcc ttatgttgct
      601 gtgacggctt ctatctctta aggagcacaa ctcgttattt ctttttttgc atcctctcca
      661 caacgtaagt aggatttcac atttaataga aaccatgagt atcatcattg tttgaacaac
      721 ttggggaaga gccgtctaca gactttatcg actaagtttt ctcttgtttc aagatttgac
      781 aataggaaac ttctgattct catgttagtt gtgatcataa ccataatagt agattcagag
      841 gttggtttcg tcgctgattt cattcctgtg caactttctt cgagtacggg aattgctgtg
      901 ttcatagcta tagcaataat atttgcgata acacagcact ttattttggc atacgttaag
      961 caaagtaata aagagactag agccagagca ctacacctcg atataacaca aatcatagta
     1021 tcaattgcac agtacgtact tgtgggaatg cttgtaattg ttattttgca gatgctaacg
     1081 gcacaacagt acaaccttac aacgctatac atatcttatg ctgttagcta tggactttgg
     1141 atcgtaactt tggctatctt ggccagagca tttttctctt ggtatcgaag gtcgggtaag
     1201 aatgtcatgg tgttaatgct aactctatcc atgattgcat atgtagtcaa cggcgtaaca
     1261 ggacttgcta cctacattga ttttttgaca caacagaggg aggtaataac atcagcggat
     1321 gtagcatact ttccagaat
//
LOCUS       DATLQL010000663         1750 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2292144, whole genome shotgun sequence.
ACCESSION   DATLQL010000663 DATLQL010000000
VERSION     DATLQL010000663.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1750)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1750)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1750
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2292144"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..886)
                     /locus_tag="VNB68_06625"
     CDS             complement(<1..886)
                     /locus_tag="VNB68_06625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37057.1"
                     /translation="MKIVHLPHSKESKNKNPIPTRRCNIFHGRYYSYSRSIISSICVV
                     LLLSSVIVVSKSADAVPPTSSSTNSSPSVLFSSDFSKASSPPPSTSNISTSSQPQPNA
                     NDDRGLFCSGTAATRIPAGSLSNSSFVCSTSTSLKNITVTKTKSISSSSLKNITEGPV
                     RFVFVNSYWTDNIPPGAVDAGLSSERTAAQPLPAVKRQEVGPGEGASILAVVLTYKGF
                     ADITGVTGSLDLPSGFQDIISPVNNNNNNGGSDGNSNSKTVLSSYNRSVKAGQTFVLY
                     FPINVLSSAQVGKEYSGSL"
     gene            1118..>1750
                     /locus_tag="VNB68_06630"
     CDS             1118..>1750
                     /locus_tag="VNB68_06630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HVD37058.1"
                     /translation="MMIINNHYADANSATEALKVENLSKIYISSMGKVVSLRNVNFSV
                     NKGEFVSVVGPSGSGKSTLMNMLGALDRPSSGKVFINGIDIFSLNDSQLSTLRNNTIG
                     FIFQSYNLINRTTILKNVEFPGITGGMSDADRRRRALKILSFLGIKDKAKFKPTNLSG
                     GQQQRVAIARALMNDPKIILADEPTGNLDTKTGHDVFELLRLLSNKFRRTI"
BASE COUNT          535 a          319 c          367 g          529 t
ORIGIN      
        1 tgagtgaacc gctatattct ttaccgactt gtgcacttga caggacattt ataggaaaat
       61 aaagtacgaa cgtttgccct gccttgaccg aacgattata gctagataac actgttttgc
      121 tatttgaatt tccatcactg ccaccattat tgttgttatt attaactggt gagattatat
      181 cctgaaatcc agagggtaag tctagtgacc cggtcacacc agttatgtct gcaaaaccct
      241 tatacgttaa tactacagcc agtattgaag ctccttctcc aggtccaacc tcttgtctct
      301 tcactgcggg taaaggctgt gcagctgttc gctccgagga taaacctgca tcaactgctc
      361 caggcgggat attgtcagtc cagtaagagt ttacaaatac aaacctaact ggaccttctg
      421 ttatattttt taaactagaa ctggagatgc ttttagtctt tgtcacagta atatttttca
      481 aactagtaga ggtactacaa acaaacgatg aattggataa tgacccagct ggaatccgcg
      541 tggctgcggt accactgcag aaaagacccc tatcatcgtt agcattaggt tgcggttgac
      601 ttgaggtaga aatatttgaa gtactgggag gtggcgatga tgctttagag aaatctgaag
      661 aaaacagaac agatggagaa gaatttgttg acgaagatgt aggcggtact gcatctgctg
      721 actttgacac cacaattacg ctcgataata agagtaccac acaaattgat gagattattg
      781 agcgggaata ggagtaatac ctgccgtgaa atatattgca cctcctcgtt gggatcgggt
      841 ttttgttctt gctttcttta ctgtgcggta ggtgcactat tttcatgata accttcagtc
      901 catttcagtt ctttgcattt atgcgtgatg aagatttcgt tcgatcttgt ctttgtgaaa
      961 actctttttt aacattctat agtgcaataa cgaaatttag ttgattgaat aacctacagt
     1021 acattcgtcg aatgtatcgt atttttttta tatctatgct tgataggaaa gatggatagc
     1081 gtaatatatc gtagaatgat atccatttgg agaagagatg atgattatca ataaccatta
     1141 tgctgatgca aatagtgcaa ctgaggctct aaaggtcgag aatctttcga aaatatatat
     1201 ctcttcaatg ggcaaagtag tgtcactgag aaatgttaac ttctctgtta ataaaggtga
     1261 atttgtatcc gttgttggcc cttctggaag cggaaaatca acattaatga atatgttagg
     1321 tgctttggac aggccgagtt caggaaaagt cttcatcaat ggaattgaca ttttttcgct
     1381 aaacgattca caactctcaa cgttgcgaaa taacactatt ggatttattt ttcaatcata
     1441 taacttgatt aataggacaa ctatactcaa aaatgtagaa tttccgggta taacaggtgg
     1501 aatgagtgac gctgacagga gacgtcgtgc gttaaaaata ttgagtttcc ttggaatcaa
     1561 agataaggcc aaattcaagc ctactaacct gagcggtggc caacaacaaa gagtagccat
     1621 agcccgagca ctgatgaatg acccgaaaat aattcttgcc gatgagccaa caggaaactt
     1681 ggatacgaaa actggacacg atgtttttga actgctaaga ttgctctcaa ataaatttag
     1741 aaggacgata
//
LOCUS       DATLQL010000664         1158 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_336811, whole genome shotgun sequence.
ACCESSION   DATLQL010000664 DATLQL010000000
VERSION     DATLQL010000664.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1158)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1158)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1158
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_336811"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(665..>1158)
                     /locus_tag="VNB68_06635"
     CDS             complement(665..>1158)
                     /locus_tag="VNB68_06635"
                     /inference="COORDINATES: protein motif:HMM:NF039346.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37059.1"
                     /translation="KLVCSDLTSKLNLSGWNNVPVDHISFWENETLKTGKRTLRFIMT
                     PHVHHWDSMMMFEENTKTLFTSDLFIQPGQYKPVISDDLSKDMIQLYNMIGIFASEEP
                     VKRAVQKLVKLGPKLICPMHGSAFDSSVFPKYIDALMNEKYAYSNKLLGKELEEKLVS
                     GGL"
BASE COUNT          327 a          228 c          218 g          385 t
ORIGIN      
        1 cttgggcaga gtgcctgcaa gaatgaccaa atctttagca gatttttgtt atagcaatct
       61 gggacactgt ctgctactgt tctataacag acagatcctc agaacctcac tagccacgtc
      121 tagtgtattt gtgccaagga cgttgaaaat gtccacataa ggaattgcat tgtttcttat
      181 ctccaagatt ctgctgcgtc atatcctcaa atacaatcag gacgcagctc atattcataa
      241 tgctgatagt cgtccctatt ttcacatttt atcaagaaca cattctcaag ctcttgattc
      301 catctggctt ctggatcaat taggagtaaa cttggtatag gttgaacaga tataaaatat
      361 cggtataact tctcattgta ctcacagtcg aaactgttgt tgtccttctc agtattccaa
      421 gcttgaatgg ttatctgcat atattattac cgttatgttc ctacaatttc tgttgttaat
      481 atcattagag caagatggct attagaggtt ttgcaatcaa gaggttgcac tctactgagg
      541 cagaaaaatt gagtccgtaa tacagttcgt ttgatctgcg ttagtgactg acgttaaggg
      601 cagggcacaa atgcagtgat ttttatcatc atatttgatc ttacaaatat ctctatgtct
      661 tgcgctatag gccgcccgaa actagtttct cttcaagctc ctttccaagc agtttgtttg
      721 aatatgcata cttttcgttc atgagtgcat ctatatattt tggaaataca gagctgtcaa
      781 aggcagaacc atgcattgga catatcaatt tgggaccaag ttttactagt ttctggactg
      841 ctcttttaac gggttcttcg ctagcaaata ttccaatcat gttgtatagt tgaatcatat
      901 cttttgataa atcgtctgaa ataaccggct tgtattgtcc tggttgaatg aaaaggtcag
      961 aagtgaacaa agtcttggtg ttctcttcaa acatcatcat gctatcccaa tggtgaacat
     1021 ggggagtcat aataaaccta agagtccttt tgcctgtttt caaggtttca ttttcccaaa
     1081 aagaaatgtg gtcaaccggc acattattcc agcctgaaag atttaatttc gaagtcaaat
     1141 cgctgcatac cagtttag
//
LOCUS       DATLQL010000665         1777 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1582327, whole genome shotgun sequence.
ACCESSION   DATLQL010000665 DATLQL010000000
VERSION     DATLQL010000665.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1777)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1777)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1777
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1582327"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            200..604
                     /locus_tag="VNB68_06640"
     CDS             200..604
                     /locus_tag="VNB68_06640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37060.1"
                     /translation="MISKDNELRERVRMMHTTIFEDEPWFVDMQKLSNEELMRIYNII
                     TTGLYEFAKDAWYIPIGEDKRCPIMIAKGYEAPNTMEKMVAFQDTAKALEREYRRFID
                     AWDFGYITKRDIEKAILSLFELRSIEIMERVV"
     gene            978..>1777
                     /gene="gatD"
                     /locus_tag="VNB68_06645"
     CDS             978..>1777
                     /gene="gatD"
                     /locus_tag="VNB68_06645"
                     /EC_number="6.3.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Glu-tRNA(Gln) amidotransferase subunit GatD"
                     /protein_id="HVD37061.1"
                     /translation="MPRYESADKNYIVMKLKNGYNVGIKISNIQFINKIGSHIGEDTT
                     SVQSLDNTIKGERHKYEYGNEVSKVALISTGGTIASKVDYRTGGVTAALSAAEIYASV
                     PELSKVASLDPEVLLNEYSENLKPEHWSMIANKVSEKVKSGIYRGIVISHGTDTMHYT
                     ASALSFALQNLPIPVVLVGAQRSSDRPSSDAALNLLGATVFATKSEFSGVFIAMHADS
                     SDDLIACHIGTRVRKNHTSKRGAFQSIDVMPVALVNGDSVNMQLQRPA"
BASE COUNT          589 a          302 c          380 g          506 t
ORIGIN      
        1 aggatataat aatattccgt taatttaaca cagccataaa tgcgttcgat tttactcatc
       61 aaagaaaagt tagcaatatg tcccaatcga cggtattagc taattgttga attatgctat
      121 aattttgaat aaatgaagaa gtggttatat ttatagtggt gaaaatgtat ttttagcagt
      181 ttatcttaat tgtttatagt tgatttccaa agacaatgaa ctcagagagc gtgttcgcat
      241 gatgcacacc acgatattcg aggacgaacc atggttcgta gacatgcaaa agctttccaa
      301 tgaggagtta atgcgtattt acaacattat tactacgggc ctgtatgagt ttgcgaagga
      361 cgcttggtat attccaatag gtgaagacaa aagatgccct atcatgatcg cgaaagggta
      421 tgaagcgccg aataccatgg agaagatggt ggcattccag gacacagcaa aggcactcga
      481 gagagaatac cgcagattca tagatgcctg ggactttgga tatataacaa aaagggatat
      541 agaaaaggca atactttctc tttttgaatt aagaagtata gagattatgg aaagagttgt
      601 ttaaatgctg actaacttcg atttatcctt ttattgtaat cttggacact atgtcctaag
      661 caattgacca tattcctaac acagaaaggc tcacccttaa gtgtagacct tgacattccc
      721 tttcgagcta agggtgcata gactttcaac gactttcatc atcaaactcg gttgtgtatt
      781 atgttagaga tgaaaatcga taaaacatat acaaagagct taaagttaga gtaagcaaga
      841 cctcatgtta tcattagggg gaatcctgaa taaaccaata taaaaaaaag gaatctgata
      901 ttctttctga aaagggcatc gtagtagggg atactgtcaa cgtaaagacg cctcaggatg
      961 aatttttagg ggttctgatg ccacgttatg aatcagcaga taagaattat atcgttatga
     1021 aactaaaaaa tggatacaac gttggaatca agatctccaa tattcaattt atcaataaaa
     1081 taggaagtca catcggggaa gatactactt ctgttcaatc tctagataat acgataaagg
     1141 gtgagagaca taaatatgaa tatggcaacg aagtatcaaa ggttgcgtta attagtaccg
     1201 gcggtacaat agcgagtaag gtggattata gaactggcgg ggttactgcg gctctttctg
     1261 cagctgagat atatgcttct gttcctgaac tttcaaaagt tgcgtcactt gatccagaag
     1321 tattattgaa cgagtatagt gagaacctaa aaccggaaca ctggagtatg attgctaata
     1381 aggtgagtga aaaggtaaag agtggaattt acagaggtat agttatttca cacggaaccg
     1441 ataccatgca ttatactgcg tcagcactta gctttgcttt acagaatctg ccaataccag
     1501 ttgtattagt aggtgcccaa agatcttctg atagaccttc ttcggatgca gcactgaatc
     1561 tacttggtgc tacagtattt gcgactaagt ctgaattttc cggagtattc attgcgatgc
     1621 atgctgattc atcagacgat ctcattgcat gtcacatagg cacccgcgta agaaaaaacc
     1681 atacaagcaa gcgcggggct tttcaatcaa tcgatgttat gccagtcgca ttggtaaatg
     1741 gcgacagtgt aaatatgcag ctacaacgtc cagcatt
//
LOCUS       DATLQL010000666         1054 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_157905, whole genome shotgun sequence.
ACCESSION   DATLQL010000666 DATLQL010000000
VERSION     DATLQL010000666.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1054)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1054)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1054
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_157905"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..821)
                     /locus_tag="VNB68_06650"
     CDS             complement(<1..821)
                     /locus_tag="VNB68_06650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HVD37062.1"
                     /translation="MSAGRRVVLTADRSLMTNYRGNFLYGFIACGPYELVPEFVFDKL
                     FCPSVETDKSTGEVKVAQCGLRRVESALLKEYQRDEVVISHPEMLAKSIGPNTTVVGI
                     NVMDPLGMAPVTTTMSPEKLSYVAMKFKKMCASIIQLKKKFSFKVVVGGNGSWELAKP
                     DRMKIHGIDTVVIGEADELALDLFQDLEGDDAPELLHTFVRNIDNIPLIRGPTINSLI
                     EAMRGCGRGCDFCDVNKRSKKDIPLDRLQTEARINLKYGFDSIWLQSDEMLLYGC"
BASE COUNT          317 a          236 c          164 g          337 t
ORIGIN      
        1 tcacatccat aaagaagcat ttcatctgac tgaagccaaa tagaatcaaa gccgtatttc
       61 aaattaatcc gggcctcggt ctgcaatcta tctaatggta tatctttctt tgaccgtttg
      121 ttaacatcac agaagtcaca accccttcca cagccacgca ttgcttcgat caaggaattt
      181 attgtcggtc ctcttatcaa aggaatattg tcaatatttc taacaaatgt gtgaagtaat
      241 tctggtgcat catctccctc taaatcttga aaaagatcca gtgcaagttc atcagcctcg
      301 ccaattacaa ctgtatcaat tccatggatc ttcattcgat caggcttagc tagttcccat
      361 gaaccatttc caccaactac caccttaaag ctaaacttct tttttaattg tatgattgaa
      421 gcacacatct tcttaaattt catagcaacg taagacagtt tttctggaga cattgtcgta
      481 gtaactggtg ccatacccag cggatccatt acattaattc ccactacagt ggtgttaggc
      541 cctattgact tcgctagcat ttctggatga gaaattacaa cttcatctcg ttggtattcc
      601 tttaataatg cactttcaac tctgcgaaga ccacattgtg caacctttac ttcacctgta
      661 cttttatcgg tttcaacgct gggacaaaat aacttgtcaa atacaaattc tggtactagt
      721 tcatacggac cacaagcaat aaagccataa agaaaattac ctcgataatt cgtcataaga
      781 ctacggtctg ctgttaatac tacacgccta ccagctgaca tcttttctga tcctcaggtt
      841 cgtttacgta tttgggtata aatctattac tatactgtta ccaatgttga ttatttaata
      901 caacccagtt ctatgaccct ttatcaaaat tgattttagc tgcctatgtg ccaaaatatt
      961 aagggcgttt agaaacgaaa cccacttgta agatgcatgt tcataagaaa ttactatttc
     1021 tctggtagga gtcgtggcaa aatagaattt gact
//
LOCUS       DATLQL010000667         1097 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2643896, whole genome shotgun sequence.
ACCESSION   DATLQL010000667 DATLQL010000000
VERSION     DATLQL010000667.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1097)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1097)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1097
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2643896"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..198
                     /gene="rpmC"
                     /locus_tag="VNB68_06655"
     CDS             <1..198
                     /gene="rpmC"
                     /locus_tag="VNB68_06655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HVD37063.1"
                     /translation="KLNTLREFNDEDLRAKLLELKADLSKLKSESAKGTLKKETGNIK
                     WTRRDIARIITIINERKSVKK"
     gene            205..468
                     /locus_tag="VNB68_06660"
     CDS             205..468
                     /locus_tag="VNB68_06660"
                     /inference="COORDINATES: protein motif:HMM:NF013985.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030677 - ribonuclease P complex
                     [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0001682 - tRNA 5'-leader removal [Evidence
                     IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein subunit"
                     /protein_id="HVD37064.1"
                     /translation="MRTIQNILKHEFIGLEVHVEYGSPRIPKSCDGMIIHETKNTFVI
                     RNEQKPKTIPKVSIKAMNLRLSNDVYFIKGSSLLGKPEDRIFR"
     gene            483..818
                     /locus_tag="VNB68_06665"
     CDS             483..818
                     /locus_tag="VNB68_06665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020266360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HVD37065.1"
                     /translation="MVKNIGLTIVPPKRTCEDELCPFHGKLPIRGKSLVGTAVSCKAH
                     KMIVVSREYPRPVQKYKRYERSSSKVHAFLPTCIDVQEGDEVKIAECRPLSKTISFVV
                     IEVLAKSGI"
     gene            808..>1097
                     /locus_tag="VNB68_06670"
     CDS             808..>1097
                     /locus_tag="VNB68_06670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uL14 family ribosomal protein"
                     /protein_id="HVD37066.1"
                     /translation="MASKSRAVSSKGVEEFRPYITRALPTSASLTCADNTGAKILRIV
                     QVTRYKGRHARQPAAAVGDFVTVTVKKGNSELRKQIFVAVIIRQKYAIRRLNG"
BASE COUNT          393 a          181 c          248 g          275 t
ORIGIN      
        1 aaactaaata ctttaagaga gtttaatgat gaagacctta gagcaaaact tctggagctt
       61 aaggctgatc tatctaagtt aaaatcagag agtgctaaag ggacactcaa aaaggaaact
      121 ggcaacataa agtggacaag acgagatatc gcacgtatca ttaccataat taatgaaaga
      181 aaatcggtaa aaaagtgaat tgaattgaga acaatccaga acattctaaa acacgaattt
      241 atcggtttgg aggttcatgt tgaatatgga tcgccaagaa ttcccaagtc gtgtgacgga
      301 atgataatcc acgagactaa gaatactttt gtcataagaa atgagcagaa gcccaagacg
      361 atacccaaag tatccatcaa ggcaatgaat ctgcgactat ctaatgacgt ttactttata
      421 aagggctctt cattgttagg aaaaccagaa gatcgcatat ttcgataatg agttgattta
      481 taatggtgaa aaatattgga ttaacaatcg ttcccccaaa aaggacttgc gaagatgaac
      541 tttgcccttt ccacggcaaa cttccaatca gaggaaagtc actagttggt acagcggtaa
      601 gttgtaaagc gcataaaatg atagttgttt cacgtgagta cccgagacca gttcaaaagt
      661 acaagagata tgaaagaagt agttctaaag tccatgcctt tcttccgacg tgtatagatg
      721 tgcaagaggg agatgaagtg aaaattgccg aatgtagacc tttgtctaag acaatttcat
      781 ttgtagtcat agaggtgtta gcaaaaagtg gcatctaaaa gcagagcggt ttcctctaaa
      841 ggtgtcgaag agtttagacc ctatataaca agggcgctgc cgactagtgc aagtctcaca
      901 tgtgctgata atacgggagc aaagatactg agaatagtgc aggtaactcg atacaaagga
      961 agacatgcca ggcagcccgc tgcggcggtt ggagattttg tcacagtcac tgtgaaaaaa
     1021 ggtaattcgg agttacgaaa acagattttt gtagcagtta ttataaggca aaaatatgca
     1081 attaggagat tgaatgg
//
LOCUS       DATLQL010000668         1067 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1935574, whole genome shotgun sequence.
ACCESSION   DATLQL010000668 DATLQL010000000
VERSION     DATLQL010000668.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1067)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1067)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1067
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1935574"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..697
                     /locus_tag="VNB68_06675"
     CDS             <1..697
                     /locus_tag="VNB68_06675"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HVD37067.1"
                     /translation="IRFVKLDVDDDDSVDRAIGEIEKELGKIDVLINNAGYGLVGGFE
                     DLAPDEIREQFETNLFGVIRVIQRVLPGMRTRRNGIIVNISSGAGIVGFPCMSGYVST
                     KFALEGLSESIAHELLPFGIKVIIIEPGVIKTDFVRNSVTSKRALNESSAYFDILGKI
                     HENLILMQEHATSPADVAKIIFDAINHREPNLRYVVGNDIAMVAEAKRNLPEAEFRKM
                     MIQDILRDLSKDD"
BASE COUNT          336 a          181 c          240 g          310 t
ORIGIN      
        1 aattaggttt gttaaactag acgtagatga cgatgattcg gtagataggg cgattggaga
       61 gatcgaaaag gaattaggga aaatagatgt cttaataaac aacgcagggt acggtctagt
      121 ggggggtttt gaggatttag ccccagatga aattagagaa caatttgaaa ccaatttgtt
      181 cggcgtaata agagtcatac aaagggttct tcctggcatg cgaacacgta gaaatggtat
      241 aattgtgaat attagctcgg gtgctggcat agtaggattt ccatgtatgt caggctatgt
      301 gagtacgaaa tttgcattgg agggccttag tgaatcgatt gcgcatgagc tgcttccatt
      361 tgggatcaaa gttatcataa tagaaccagg cgttattaaa actgattttg tacgaaattc
      421 tgttacttca aaaagagcat tgaacgaatc ttctgcatat tttgatattc tagggaaaat
      481 ccatgagaat ctcatcctta tgcaggaaca tgctactagt cccgcggatg ttgcaaagat
      541 aatttttgac gcgataaatc acagggagcc gaatctgcga tatgttgttg gcaatgacat
      601 tgccatggtc gccgaagcta agagaaactt gcctgaagct gaatttcgaa aaatgatgat
      661 acaagacatt cttcgggact tgtcaaaaga cgactgacga caaattagcc gacttattca
      721 atatacttta tctaccgtcg ccataattaa atctctaggg tactattcag tactattcga
      781 aaaagtggaa atcgaaatga aatgacttgg agattgtttc accccactct tcaagatgct
      841 atccaacatg gtgaatcaaa aacaaaactg gcaaaactta atttgaataa gtacaaatta
      901 gctgaatcaa aaatttacct tttaatatcc agatgaagat atgaagaata cacgatgtct
      961 gtcttaagtt tgctcagctc ctctccccgg atcaatgtcc gcagggtttt gttgggtcgg
     1021 gatgagcgtt aattgtcgtg tcattaagat tcggccttgt cgtttct
//
LOCUS       DATLQL010000669         1576 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_518492, whole genome shotgun sequence.
ACCESSION   DATLQL010000669 DATLQL010000000
VERSION     DATLQL010000669.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1576)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1576)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1576
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_518492"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..244
                     /locus_tag="VNB68_06680"
     CDS             <1..244
                     /locus_tag="VNB68_06680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37068.1"
                     /translation="ILILFFFNDCHLIINTTYYVESGLKFLEQIAAMHGGATNPWYSL
                     SDAAPNIFRSDCLLTKSVELFKLSIFLLLYLAGSPQ"
     gene            784..1164
                     /locus_tag="VNB68_06685"
     CDS             784..1164
                     /locus_tag="VNB68_06685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37069.1"
                     /translation="MDENPSKEEYIAFLTVVSNNFEKDLSLVKNMLATSEKMTHAENG
                     FKLSERAEMAAGWWFYDVFVTRDFLQKLFQQLVPEGVHDRKTATIKIVDFFQGQLRKY
                     GSEAKIKMYGDIPFAAPWWAWLMR"
BASE COUNT          473 a          306 c          315 g          482 t
ORIGIN      
        1 tattctcatc ttgttttttt tcaatgattg ccacttgatt atcaacacaa cctattatgt
       61 tgagtcgggc ctaaaattcc ttgaacagat cgcagcaatg catggtggtg caacaaatcc
      121 atggtattca ttgtcagacg ctgcacctaa tatattcaga agtgattgtt tgcttaccaa
      181 gtcagtagaa ttgttcaaac taagtatttt cttactatta tatctggccg gttcgccaca
      241 atgatgatga ttctttttag acgctcggtt gggaaaagcg tgagaaaact ctcaatttcc
      301 aattttattc atgttgcgga tttggttctt gttattgttt tattatcatt attatccata
      361 atcgttacga taccatctaa tgaatccgct agccgtcttt aaaggaaaag gtcgaacgaa
      421 aggagcgttc tgtaggacct gctaggaact acatcgagca tcaagttgtt ctgtgaaatg
      481 gctgatatga gcgacaatca gcctcctatg ccattctttc tcttctttgg cggcgggcaa
      541 tgtcaataaa aatcgccaga tatgggcaac atttcaagca gtcgcctacc ttttagcgtt
      601 aactgattct agtcactttg ccttcgtttc ttcgcttgat atagccatac attggggtct
      661 tctgaatatc tctgcatccc atagtttctc aaattaaatg agttgcgaca caagctccct
      721 agtatatagg ccatcctttt tgaatcatcg caattaaata ctatttttca cccaattgaa
      781 ggtgtggatg agaatccaag caaagaagag tatatagcat tccttacagt tgtgtccaat
      841 aactttgaaa aggatctgtc attagtaaag aatatgcttg ccacctctga aaaaatgact
      901 catgcggaaa atggcttcaa gctaagcgag agggcagaga tggccgcagg atggtggttc
      961 tatgatgttt ttgtcacccg tgactttctg caaaagctgt tccaacaatt agttccagag
     1021 ggagttcatg acagaaagac cgcaacaatc aaaattgtag acttttttca aggacaactc
     1081 agaaaatatg gctcagaggc caaaataaag atgtatggcg acattccgtt tgcagctcct
     1141 tggtgggcct ggcttatgag atgaaagaaa aaaaaggtgc ctaactaaat ccagttagta
     1201 aattgatgag caacgataca gcacctcggg cccgctaaaa atcgttcaca agagtgataa
     1261 gatattttgc agtcattttt cttacttctc gtacatgatc tcatggcaca attgaattgc
     1321 tataatgtta cccgtataga gatggttagc actaggagct aaaatgactt tcattttatt
     1381 acttagatag atcataatgt aattcaataa gcggttattg acaattgagg ctaggctacc
     1441 cctgtatcaa caatagcata ggatgtaagg cagcttcaag gttccagctc gcatcctatt
     1501 ctgagaaaag aatgcacgat gtcgtaaaaa ataatctggg gtgcttgcaa aagatcttac
     1561 attataacct gaagaa
//
LOCUS       DATLQL010000670         1602 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1582727, whole genome shotgun sequence.
ACCESSION   DATLQL010000670 DATLQL010000000
VERSION     DATLQL010000670.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1602)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1602)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1602
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1582727"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            112..1254
                     /locus_tag="VNB68_06690"
     CDS             112..1254
                     /locus_tag="VNB68_06690"
                     /inference="COORDINATES: protein motif:HMM:NF015411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HVD37070.1"
                     /translation="MLSIDKRQQIPAQFNKILIVGLGQLGLPVAKYVKERGFDAYGYD
                     ISPKAMDRAEKTAAIKKATDFGEFDVYILCVSTHKPEDMFSPQIDGLFSIVERISKEA
                     KNGALVSIESTIPKGTSKKVFEMLNHRLHVAHAPHRWYALEEKEHGVNQLRVVGGVCN
                     CCLKVALQFYDGSSTNNGILSDHSTPASTIIDDNNSNSNNSSVTHHITSTGDTIDISL
                     PTPTPTSTSSSTSTTISLGIPMHPVSEVEVAEITKIVENADRYLQISFAEDLYLYCQA
                     NNINFGELREALNTKWNVNILEPRDGIGGHCLPKDTRMFLQSSKSIRSKIIQAAMEVD
                     EDYRRYRESREGRGVGIGMGIGKQRSKEGAHLFSTSFNLSEDIEDK"
     gene            1275..>1602
                     /locus_tag="VNB68_06695"
     CDS             1275..>1602
                     /locus_tag="VNB68_06695"
                     /inference="COORDINATES: protein motif:HMM:NF014625.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIG-L family deacetylase"
                     /protein_id="HVD37071.1"
                     /translation="MTNKQVVLALGAHPDDIEIGMGGTVAKLVGMGYDVKLVVATLPN
                     FVKTDTKEERKKESTMSAKVMGCKTPEFLDLGPEEITFNRKFVTQINEIVRNCEPDAI
                     FTQWIGD"
BASE COUNT          556 a          266 c          319 g          461 t
ORIGIN      
        1 tggtaagagc ggctttctgt acaagcatca cataagtttt agcaatgaat taattatgtt
       61 catttgtttc ctaattcttt aataattatt tccctcgact attgtggtat attgctttct
      121 atagataaaa gacaacagat tcctgcccaa ttcaataaga tcttaatagt tggactaggt
      181 caactaggac taccagtagc aaaatatgta aaggaaagag gattcgatgc ttatggatat
      241 gatataagtc caaaagcaat ggatcgtgca gaaaaaacag cagcaataaa gaaagctact
      301 gattttggtg aatttgatgt atatattttg tgtgtatcaa ctcataaacc tgaagatatg
      361 ttctcacctc aaatagatgg tttattttct atagtagaga gaatttcaaa ggaagcaaag
      421 aatggggcac ttgtttcaat agaaagtacg attccaaagg gtacatcaaa gaaagtattt
      481 gaaatgctca atcacagatt acatgtagct catgctccac atagatggta tgctttagaa
      541 gaaaaggaac acggtgtaaa ccagttacgt gttgtaggtg gagtttgtaa ttgctgtctt
      601 aaagtagcat tgcagttcta tgatggcagt agtactaata atggaatctt atctgatcat
      661 tctactcctg ctagtactat tattgatgat aataatagta atagtaataa tagttctgta
      721 acgcatcata taactagtac tggcgatact atcgatatct ctcttcctac ccctacccct
      781 acttctactt ctagttctac ttctaccact atctctctag gaatccctat gcatccagtt
      841 tcagaagtag aagttgctga aattacaaaa atcgtcgaaa atgcagatag atatcttcaa
      901 atatcatttg ctgaagatct ttatctttac tgccaagcaa acaacataaa ctttggagaa
      961 ctgcgtgaag cactcaatac caaatggaat gtaaacatac ttgaaccaag agatggaata
     1021 ggaggacact gtctgccaaa ggatactaga atgttcttgc aatcatctaa atcgataaga
     1081 agcaagataa tccaggcagc tatggaagta gatgaagatt atagaagata cagagagtcg
     1141 agggaaggta gaggagtcgg tataggaatg ggaataggta aacaaagatc aaaagagggc
     1201 gctcacctgt tctccacatc atttaatctg tcagaggaca ttgaggacaa atagtttata
     1261 attggtatta gcatatgacc aacaaacaag tagtacttgc tcttggagct catcctgatg
     1321 atatagaaat tggaatggga ggtactgtag ctaaactggt cggaatgggc tacgatgtta
     1381 agctagttgt agctactctt ccgaattttg tcaaaactga cacaaaggaa gaacgcaaaa
     1441 aggaatcaac tatgtctgct aaagttatgg gatgtaaaac accagaattt ctagatcttg
     1501 gccctgaaga aattacgttc aataggaaat ttgtcactca aatcaatgaa atcgtccgaa
     1561 actgcgagcc agatgcaata tttactcaat ggatagggga ca
//
LOCUS       DATLQL010000671         1401 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_158221, whole genome shotgun sequence.
ACCESSION   DATLQL010000671 DATLQL010000000
VERSION     DATLQL010000671.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1401)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1401)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1401
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_158221"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..782)
                     /locus_tag="VNB68_06700"
     CDS             complement(<1..782)
                     /locus_tag="VNB68_06700"
                     /inference="COORDINATES: protein motif:HMM:TIGR00702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcaO-like family protein"
                     /protein_id="HVD37072.1"
                     /translation="MSGTSRIKPVEQTLKEVLPLTEKIGVTRLADITDMDILKIPNYS
                     AVLPGTDDYIWVYSGKGLTKHHAQASALMESIERYCSLPSGAPKNMIQGSYDDLSRKF
                     NVLHPSSVVEPMKYQYTDDMVMDFLPGFDLMNKEFLLVPAPIALFKYSARQPAINPFA
                     YHHTNGLASGNVMEEAICHSLCEVIERDAISMAQLKASAVHFHILKTVEHSLISNGYY
                     VTPITATDYVDDNSIFPDVEINDIEFEPIVRLVKKFQKANIPL"
BASE COUNT          426 a          255 c          269 g          451 t
ORIGIN      
        1 agcgggatat tcgctttctg gaatttttta acaagtctaa caatcggttc gaattcaata
       61 tcattgattt ctacgtcggg aaaaatagaa ttgtcatcca catagtcggt cgcggtaatc
      121 ggtgtaacat aatatccatt cgagatgaga gagtgctcga ctgtttttag aatgtgaaaa
      181 tgtactgcac tagccttgag ttgtgccatg ctaatcgcat ctctttctat aacttcacat
      241 agagagtgac atattgcttc ttccattaca ttgccagaag caaggccgtt tgtgtggtga
      301 tacgcgaaag gatttattgc tggttgtctt gccgaatatt tgaagagagc aatgggtgca
      361 ggtaccaaca agaattcctt attcattaga tcgaaacctg gaaggaaatc cattaccatg
      421 tcgtcagtat actgatattt catgggctca acaacactcg aaggatgaag tacgttgaat
      481 ttcctgctaa ggtcgtcata agacccttga atcatattct ttggagcgcc tgaaggaagt
      541 gaacagtatc tttcaatact ttccattaat gcactggcct gagcatggtg cttggtcaga
      601 cctttgccgc tatataccca aatatagtca tctgtacctg gtaggaccgc agaataattt
      661 ggaattttta aaatatccat atctgttatg tctgcaagtc tcgttactcc gatcttttcg
      721 gtaagaggaa gaacttcctt aagggtttgt tcaactggtt ttatccttga cgttcccgac
      781 atcgtccact tcttcctact ttggaggtca agcggcgtta ggttcaatac aatatactaa
      841 ctttttcttt gttcatatca attttactga ctccatagtc ttatatttga cctgaatgaa
      901 tttgactatg acatagactt gaataatagc aacaccaacg aaagtttaca aactgttagt
      961 agaatactaa agaaagctgc ggaagatccc gaatttagga aaactttttt cttaaatcac
     1021 caagagattc taaaagagta tggagtatct gacgaaatca agtatataat agttaagtgc
     1081 ctcagtgatt tgactaacta gccaaatcgg aaagtatcta ttaattggaa tctaagtaaa
     1141 atgataacaa gtaaggataa aactaaatat cgcacaattt gcgactccta tgttcttccg
     1201 tatctttttt gaagatcgta gaattgtgcc tatctgtcat ttgaagatgc aatgtgtatg
     1261 agtatactat ttcagtgagt tttcaacaca gtcttgataa ccagttattg gaatgtgtat
     1321 atccgtaagg ccatttgaat caactcagta taattcgtta ccaaaattgt tcagaattca
     1381 caaaaaagtt catctggatg t
//
LOCUS       DATLQL010000672         1341 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_518572, whole genome shotgun sequence.
ACCESSION   DATLQL010000672 DATLQL010000000
VERSION     DATLQL010000672.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1341)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1341)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1341
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_518572"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            31..882
                     /locus_tag="VNB68_06705"
                     /pseudo
     CDS             31..882
                     /locus_tag="VNB68_06705"
                     /inference="COORDINATES: protein motif:HMM:NF012506.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0046912 - acyltransferase activity, acyl
                     groups converted into alkyl on transfer [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="citrate/2-methylcitrate synthase"
     gene            905..>1341
                     /locus_tag="VNB68_06710"
     CDS             905..>1341
                     /locus_tag="VNB68_06710"
                     /inference="COORDINATES: protein motif:HMM:TIGR00451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PUA domain-containing protein"
                     /protein_id="HVD37073.1"
                     /translation="MKKSILSKRDTSTIKNIIRNKWPPAAQNLENEKNFASYELDNGQ
                     RIVSTKAFTAVQTDAETIVPFLGTVQILSAFPSVVVDMGAIKFVCNGAKIMRPGIVKF
                     DTFKKDDLVTVKDVKFSKILAVGRALEDSIISIQNEKGYVIDNL"
BASE COUNT          458 a          253 c          290 g          340 t
ORIGIN      
        1 aatcttgacg acgacggtaa ggatgccaac attatccgag ccattaattt gatatccaaa
       61 attcccacaa tagttgcggc atgggagcgg attagaaata acaaagaaat agtgtctccc
      121 gcaaccgaag aaacacatgc ggctaatttt ctgtatatgt taaggggtac taaacctctt
      181 gcagaagaag caaaaatatt tgatatctgt cttatcttgc acgcataaca cagttttaat
      241 gcatcaactt tcgctgcaag agaaattgcc tccacaagag cacatatgta ttcctgtatt
      301 ggaggtgcaa tcggtgcact gtctggcgaa ttacatggcg gtgcaaacgt ccaagtaatg
      361 aagatgcttc ttgagatcgg cgatattaag aacgtagaaa aatgggtaaa aaaccacctt
      421 gatacaggag ggagaataat gggcatgggg cacgcagtct acaaaaccaa tgatcctcgg
      481 tcagaggtgc tttcaagact atcaaagatt ttgtcgggtc gcaaaaaaag tcattggttt
      541 gaaattaccg aaaaagtcga gaggataact gaactataca tgatggatca gcgaaaacag
      601 gcaatatacc ccaacgttga tctttatagt gcttcgttat atcatgatat ggacataccg
      661 acggatctaa atacgccaat ttttgcaata tctagaatag caggttggtc ttcccacgta
      721 attgaagaaa aatttgccga ggccgcacct aaaccggctc tttacagacc caaggcactt
      781 tatgtaggaa gatattgcgg accgatgggc tgtgaatata ctcctctcca agaccgaggt
      841 gaagctgaga aaatccataa tagcacacgt gcttccaaat gaaataatag aaggcggttc
      901 gaaaatgaag aaatcaatcc tttcgaaaag agacacctca acaataaaga atattattcg
      961 caataaatgg ccacctgcag ctcagaattt agaaaacgaa aaaaacttcg catcatacga
     1021 gctagacaat ggtcagagga ttgttagcac taaagcattt acagcagtgc agactgacgc
     1081 tgagacaatc gttccctttt taggaacagt gcaaattttg tctgcattcc cttcggtcgt
     1141 agtagatatg ggagcaataa aatttgtttg taatggtgct aagataatgc ggcctggcat
     1201 agttaaattc gacaccttta agaaggatga tttggtaaca gtcaaagacg taaagttctc
     1261 aaaaatttta gcggtgggta gagctcttga agatagtata atatctattc agaatgaaaa
     1321 aggatatgtc atagacaacc t
//
LOCUS       DATLQL010000673         1294 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2644430, whole genome shotgun sequence.
ACCESSION   DATLQL010000673 DATLQL010000000
VERSION     DATLQL010000673.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1294)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1294)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1294
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2644430"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1158)
                     /gene="dnaG"
                     /locus_tag="VNB68_06715"
     CDS             complement(<1..1158)
                     /gene="dnaG"
                     /locus_tag="VNB68_06715"
                     /EC_number="2.7.7.-"
                     /inference="COORDINATES: protein motif:HMM:NF003108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase DnaG"
                     /protein_id="HVD37074.1"
                     /translation="MPNTGIVKYHVKLTFEVDGIVEKADIIGAIFGQTEGLLGPEMNL
                     NELQKVSKVGRIEVNVDTKSNTTKGDALLPMSTDISTAALISAAIESIDKVGPFQGKF
                     LLVGIDDIRAIKKKVIVDRAKKIIQEWATKTISEGEEMLRDVYDASKPGKLTTFGKAQ
                     LACGTGVFDSPYIILVEGRADVINLLRAGFDNSIAIEGAKIDETITNLTSGKRVIAFL
                     DGDRAADLILKELQGLVKIDKVLRAPDGKEVEECTPLEISEILKDVIEPTGEQYDVPV
                     RHQKNVKKSKNYENNNTAYEASSNSNNDDNAVDNPQITSVIKEVYPQINETLEAMILD
                     NSMQVLLKIPVSEIIKRLDSLEGARFLVLDGIITQRLIDAAYRAGIEFVVGH"
BASE COUNT          338 a          286 c          205 g          465 t
ORIGIN      
        1 atgccctacc acaaactcaa ttcctgccct gtacgcggca tcaataagtc gttgtgtaat
       61 aattccatcc agaaccagaa atctagcacc ttctaaggag tccaatcttt tgattatttc
      121 tgatactggg atcttcaaca atacttgcat cgaattatcc aatatcattg cctccaaagt
      181 ttcattgatt tgtgggtata cttctttgat aactgaggtg atttgtggat tatctaccgc
      241 attatcatca ttattagaat ttgaggacgc ctcatacgct gtattgttat tttcataatt
      301 ttttgacttc tttacgttct tttgatgtcg aactggaaca tcgtattgct cgcctgtagg
      361 ttcaattacg tcttttagta tctcagatat ttccaacgga gtgcactcct ccacttcttt
      421 gccatctggt gctctcaaaa ctttatcaat tttaaccaaa ccttgcaatt cctttaagat
      481 caagtcagca gccctatcac cgtctagaaa tgctataact ctctttcctg atgtgaggtt
      541 ggttatagtt tcatcaattt tggctccttc aatagcaatt gagttatcaa aacctgcacg
      601 taaaaggtta atcacgtcgg ccctaccttc aacaagaata atgtacggcg aatcaaatac
      661 tccagtaccg caggctaact gagcctttcc aaatgtggtt agttttcctg gtttgcttgc
      721 gtcatataca tcgcgtagca tttcttctcc ttcacttatt gtctttgtcg cccattcttg
      781 aattattttt ttggctctat ccacaataac ttttttcttg atagctcgta tgtcatctat
      841 accgactaag agaaacttac cctgaaaggg tccaacttta tctatgcttt caatcgcggc
      901 agatatcaat gcagcagttg atatgtcagt gctcataggg agcaaagcgt cgcccttagt
      961 tgtattagat ttggtatcaa catttacttc aattctccca acctttgaca ctttctgcaa
     1021 ctcgtttagg ttcatctcag ggcctagtaa tccctctgtc tggccgaata ttgcgccaat
     1081 tatatcggcc ttttctacta tcccatcaac ttcgaatgta agtttaacat gatattttac
     1141 tataccagta ttaggcattt tcaaaccctc atatttgtaa atatgatggt aagcttatct
     1201 tgcttgaata taagtgcttt gacatgtttt aataaatctt cagctcattt tttgtttaaa
     1261 tcagaatcgg aaatgtttag aattattcct tcta
//
LOCUS       DATLQL010000674         1075 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1401970, whole genome shotgun sequence.
ACCESSION   DATLQL010000674 DATLQL010000000
VERSION     DATLQL010000674.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1075)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1075)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1075
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1401970"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1054)
                     /locus_tag="VNB68_06720"
     CDS             complement(<1..1054)
                     /locus_tag="VNB68_06720"
                     /EC_number="3.2.1.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="sialidase family protein"
                     /protein_id="HVD37075.1"
                     /translation="MHKLGLFRKKDYLVFEKREAIKLNGKNLSGAEFDVKTTQFFASN
                     GLKAVKSELNWKLLYFHHGEIFGSLYPDDCDLYKSMDGGKTAIFLNKFPESIKSIFVS
                     SQNTILICLKGSLYRSSGSGKTFEKTLDLGSHVSFFRFNNAITETPDRVLMAGEYGNI
                     MDNNRWRKLAYIYISSDDGKTWKTSDFLIQMGTNKHVHIVKYSRILNKVMVADGDNYK
                     RLWLANSLNGSDHENSQWELITKFHIQMGGYTAVVESNGKVIFGTDYQGGTNFLVETV
                     DGKKFTKKIIPEPYRRSPIDNMVVRKSKAGEEIWANLPFSTVNTKCLLMYTANNGKSW
                     NKVFEYDRSTHTVWLIN"
BASE COUNT          293 a          236 c          196 g          350 t
ORIGIN      
        1 agtttatcag ccaaacagta tgagtagatc gatcgtactc aaagacctta ttccagcttt
       61 tgccgttgtt tgctgtatac attagcaggc actttgtgtt gacagtagaa aatggcaaat
      121 tggcccatat ttcttcccct gccttcgact tccttacaac catattatct attggacttc
      181 tccggtatgg ttcgggaatg atttttttgg taaatttttt gccatccaca gtttcgacaa
      241 gaaagttggt cccgccctgg taatccgtac caaatatgac tttcccatta ctttccacta
      301 ctgcagtata accgcccatc tgtatatgga atttagtgat gagttcccat tgtgagtttt
      361 catgatcaga accatttaat gaattggcta gccataatct cttgtagtta tcgccatctg
      421 caaccatgac tttatttagt attcgactgt acttaacaat gtgaacatgc ttgttggtcc
      481 ccatttgaat caggaaatca gatgttttcc aggtttttcc atcgtcagaa ctgatataga
      541 tgtatgcaag cttccgccac ctgttgttat ccataatatt gccgtattct cccgccatca
      601 acaccctatc cggggtttct gtgatggcat tattaaagcg gaagaagctg acgtgtgatc
      661 caagatccaa tgttttttcg aacgtctttc ctgaacctga acttctgtac agggaacctt
      721 tcaggcatat aagaattgta ttctgacttg aaacaaagat ggactttata ctttccggga
      781 atttattcag gaaaatagcg gttttccctc catccatgct tttgtaaaga tcacagtcgt
      841 ccggatataa ggacccaaaa atctctccat gatgaaaata aagaagcttc caattaagtt
      901 cggattttac agccttaagc ccattgctgg caaaaaattg ggtagttttg acatcaaatt
      961 cggcaccaga tagattcttg ccgtttagtt ttattgcttc gcgcttctca aataccaggt
     1021 agtctttctt acgaaacagg ccaagtttat gcaaaatctc ccaaacagca aatga
//
LOCUS       DATLQL010000675         1351 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2294155, whole genome shotgun sequence.
ACCESSION   DATLQL010000675 DATLQL010000000
VERSION     DATLQL010000675.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1351)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1351)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1351
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2294155"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            447..>1351
                     /locus_tag="VNB68_06725"
     CDS             447..>1351
                     /locus_tag="VNB68_06725"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HVD37076.1"
                     /translation="MRLRTSSMEYNWIVFMTYFKNKLLNQLVIISKMAIFYFDIRVSS
                     SVNYVENSFARIKLGFRHILVTILAAMVFLCCVIFTNASAVDSISPVLVESDTGIEQK
                     DENNWIQVNHDIYGTRNSNQTVITKNNVGTLQVKWTLFNDFEIQEPPIIIGHKGYVQD
                     YVGNIIAFDTLTGKVIWKIRAGNGPTMGLVFNHGVIFSSTASNSSIVAIDATNGEINW
                     VSKVLGDPLLGYSVDSPPIVWKDYVIAGSGGSGLPPGLGMVKGNVTAINRTNGEIIWN
                     LDTTTGAWVKLGKTPPNGGATAWSGG"
BASE COUNT          405 a          221 c          300 g          425 t
ORIGIN      
        1 aactgtgggg aaaatcgcta tcttacatcg acatcagtgc aagacatgtg gtataatttg
       61 cgaatgtgaa tctaatcttg actgtaatcc tagtatattt atgaactaca tttgtttgac
      121 ttgcagaaat tattggaatg cctaaaagga tagggatcca tggttcttgc aggcagatta
      181 taatcctcga actgtctgtt gcatgcatta atttaaatag aaagattcct tcgcagtgac
      241 tcaaatcctt agaattaata accattttaa gtcggtctaa ggaaaaatct tttaacatgg
      301 atattgtaaa gatctgtagt gtttttcgaa acatggaaat gtttatcatg tgaatgttgg
      361 caaataagtt ttcctgttcg atactttatg tgaaaccttg gcagatatga attaatcttt
      421 aaaagactcg gcttggatga gatgggatga ggttaagaac ttctagtatg gagtacaatt
      481 ggattgtatt catgacgtac tttaaaaata aattattaaa ccaattagta ataatatcga
      541 agatggcaat attttatttt gatatccgtg ttagttcgtc tgtgaactat gttgaaaact
      601 cgttcgccag aataaagctt ggtttccgcc atattttagt taccatattg gctgcaatgg
      661 ttttcttatg ttgtgttatt ttcacgaacg cttcagccgt tgactctatc tctcctgtac
      721 tcgtcgaaag tgacactggc attgagcaga aggatgaaaa taactggatt caagttaatc
      781 atgatatata cggtaccagg aatagtaatc agactgtgat aacaaagaac aacgttggca
      841 cactgcaggt taaatggacg ctcttcaatg attttgagat acaagaacct cccattatca
      901 taggtcataa aggctacgtc caagattatg tcgggaatat aatagcattt gataccttaa
      961 ctggaaaagt aatttggaag atccgtgctg gaaacggccc tacgatgggc ttggtcttta
     1021 atcatggtgt gatattttca agcaccgcgt cgaactcttc cattgtggcg atcgatgcaa
     1081 caaatggtga aattaactgg gtatcgaagg ttttgggtga tccactgttg ggttatagtg
     1141 ttgattctcc accaattgta tggaaagatt atgtgattgc aggttctggc ggaagtggcc
     1201 ttcctcctgg attgggcatg gtaaagggaa atgttactgc catcaatcgt actaacggtg
     1261 aaataatatg gaatcttgat accacaacag gcgcttgggt aaaactcgga aagactcctc
     1321 ccaatggagg tgcaacggcg tggtctgggg g
//
LOCUS       DATLQL010000676         1164 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_694043, whole genome shotgun sequence.
ACCESSION   DATLQL010000676 DATLQL010000000
VERSION     DATLQL010000676.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1164)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1164)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1164
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_694043"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..542
                     /locus_tag="VNB68_06730"
     CDS             <1..542
                     /locus_tag="VNB68_06730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37077.1"
                     /translation="VVLGVESNIIHKVDSLMPPSDGKQDALEVASSGLSKKTANNNRH
                     NTKQSSPCLPPIPVDLKAGENKIGLREFYADKHPVNHYEKTVVFAYYLTKFNNHPDVR
                     YGEILSCYEEVNEKKPSVVDIVKNSVRYKGWLEHCSDKFVTRLTISGENFVKFDLPQQ
                     KNKKMMIQESMVLGESRLV"
     gene            complement(552..1103)
                     /gene="endA"
                     /locus_tag="VNB68_06735"
     CDS             complement(552..1103)
                     /gene="endA"
                     /locus_tag="VNB68_06735"
                     /EC_number="4.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000214 - tRNA-intron endonuclease
                     complex [Evidence IEA];
                     GO_function: GO:0000213 - tRNA-intron endonuclease
                     activity [Evidence IEA];
                     GO_process: GO:0006388 - tRNA splicing, via
                     endonucleolytic cleavage and ligation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-intron lyase"
                     /protein_id="HVD37078.1"
                     /translation="MNAIHALLVENRIIVCNIEHSRELFSNGFYGKPLGIAKPKSNLF
                     DSRLILDLIEGCYLVHTKKLRLTRPNGEQIPFKEIKAICRREYVNFDNKYLVFQRLRD
                     HGYVVSPGIKFGCDFAVYEHGPGLDHAPFLIEVFSPAEYMSATGIVLAGRLATTVKKQ
                     FIIAIPRIKEKKVDFIGFDWWRA"
BASE COUNT          377 a          238 c          210 g          339 t
ORIGIN      
        1 ctgtagttct tggagtagaa agtaatatta ttcacaaagt agattcttta atgcctccgt
       61 cagacggtaa acaagatgca ttagaagtgg catcatctgg actaagtaag aagactgcca
      121 acaataacag acataataca aagcaatctt caccctgctt gccacctatt ccagtagatc
      181 tcaaagcagg tgaaaataaa atagggttaa gagaatttta tgccgataaa catccagtaa
      241 accactatga aaaaaccgtc gtctttgctt attacttaac taaattcaat aatcacccag
      301 atgttagata cggcgaaatt ctttcctgtt atgaagaggt gaacgaaaaa aaacctagcg
      361 tcgttgacat agtgaaaaat tccgtgaggt ataaagggtg gctagaacac tgctctgaca
      421 aatttgttac ccgccttaca atatcgggtg agaacttcgt aaaattcgat ctgccacaac
      481 aaaaaaataa aaagatgatg attcaagaat caatggtttt aggtgagagt agattagtgt
      541 gagtgttgca tttaagcacg ccaccagtca aagcctataa aatcaacctt tttctccttt
      601 attctaggaa ttgctattat gaactgtttt ttaacagtcg tagccaacct gcctgcaagt
      661 acaatcccgg ttgcagacat gtactcagct ggactaaaga cctctatcaa aaaaggagca
      721 tgatctaagc ccggtccatg ctcgtaaact gcaaaatcgc agccgaattt aattcccggc
      781 gatactacgt atccgtggtc tcttaatctt tgaaagacta gatatttatt atcaaaattg
      841 acgtactccc ttctgcatat agccttaatt tccttaaacg ggatctgttc gccattcggt
      901 cgtgttagcc tcaatttttt tgtgtgaact agataacatc cttcaatcaa atctaatata
      961 agacgcgagt caaacaggtt actctttggt tttgcaatcc ctaatggttt accatagaag
     1021 ccattgctaa aaagctctcg tgaatgctct atattgcaaa cgattatcct gttttctacc
     1081 agtagagcgt gaattgcatt cattacatgc tcaatgccaa tatggtaagt gaatcagaag
     1141 cctcttggca tttatctgcc atac
//
LOCUS       DATLQL010000677         4791 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1402293, whole genome shotgun sequence.
ACCESSION   DATLQL010000677 DATLQL010000000
VERSION     DATLQL010000677.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4791)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4791)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4791
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1402293"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1125)
                     /locus_tag="VNB68_06740"
     CDS             complement(<1..1125)
                     /locus_tag="VNB68_06740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HVD37079.1"
                     /translation="MTDNLYHDVVIIGSGLAGLRAAISCAETNKKLSIGVISKVQVMR
                     SHSVSAEGGTAAVLFEDEGDNKASHIYDTIRGSDFLADQDVAERLVRQMPDEIYKLDD
                     WGMPWSRKTDGRIDQRHFGGYSFPRATYAQDKVGFYEMQTLYDTCLKFDNIHFYNEWF
                     CTSILDDGNNNFAGLTVIEMKSGDFLIVKALAGIICTGGAGRMYSFSTYAYSSTPDGL
                     DMAYRAGLALKDMEFVQFHPTGIIPSGILITEGARGEGGYLINNEGERFMKRYAPKNM
                     ELAPRDVVSRSMIMEIQEGRGFVHETGVECLKLDLTHISEDRIKERLAGIREIGIKFS
                     GVDIVNEPIEIRPVCHYMMGGIHTDIDGRTEMDGLWAAGEA"
     gene            complement(1411..2667)
                     /gene="hisS"
                     /locus_tag="VNB68_06745"
     CDS             complement(1411..2667)
                     /gene="hisS"
                     /locus_tag="VNB68_06745"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: protein motif:HMM:TIGR00442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004821 - histidine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006427 - histidyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HVD37080.1"
                     /translation="MRDIEFEESKYIELMRQKFIDAAQRFNFNFMEPSPLELLSTLEA
                     KSGPSISNETYSFTDKGGRMIGLRFDLTVGLSRFVSQRRELKMPTKLASFGGVWRYDE
                     PQFGRYRYFHQWDVEIFGSFSNEADSEIIEFVYKFLENLGLEIVVEINHRQIIERFVR
                     EKLEISAISTIGEMLRAVDKLSKKKPQQIYEEYEGKLNLSKLRQLIEFSNFKGKPEDC
                     PDINILETFEGWKSTLEIFDSLKSRGVKNVQLNLGVVRGLDYYSGLVFEVFDPSTAIG
                     ALVGGGRYDKLTEIFGRKDIGTTGAAGGVERILSAMRNHNLMKLKSKPLIYVVYSSEN
                     VKNYAIRIVSDLRTSGYTTDYDFKGRRIDKQINEAISRRASAIIVVDQDEIKNQIVTI
                     RNSKGETSKHKITDLIKKMDEVLMFC"
     gene            2696..3190
                     /locus_tag="VNB68_06750"
     CDS             2696..3190
                     /locus_tag="VNB68_06750"
                     /inference="COORDINATES: protein motif:HMM:NF014058.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="archease"
                     /protein_id="HVD37081.1"
                     /translation="MRTYGSHLDFAINYIIIPSKLASVGGGFRYLEHVTDAYVEAYGH
                     SMAEAFDYSARGLVNLMFDIDNANEEIPIEIRVEGDDISHLLYNWLEKVLLIVLVEGL
                     VMSKFAVSISLKSTYKLEARSMADSVDLIKHNYKTEIKGITYHAMELIQKDNLVKIRY
                     IADL"
     gene            3367..3708
                     /gene="trxA"
                     /locus_tag="VNB68_06755"
     CDS             3367..3708
                     /gene="trxA"
                     /locus_tag="VNB68_06755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HVD37082.1"
                     /translation="MSSHTSSNPPLIELSEKNFDEVVSSDKPVLVDFWATWCGPCQFM
                     LPIFDKLAKKYGDKVSFGRLNVDDNQGIAMRFDVYAIPTFIVFMNGKAVDKAVGAVGE
                     KGLEGLLEKYQ"
     gene            complement(3736..>4791)
                     /locus_tag="VNB68_06760"
     CDS             complement(3736..>4791)
                     /locus_tag="VNB68_06760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HVD37083.1"
                     /translation="GLGPSANIILIDGVLKQGDRVVVAKRDNAIVTKVKALLLPKPLD
                     EMRDPRDKFRPVDNVVAAAGLKITSPELDGVLAGSPLYVLKDGEDEGRLRSLVESEIK
                     AAIIRTDSNGIVLRCDTIGSLEATVDLLRKDKIPIQSADIGHITRRDVLAASAVKEKD
                     RYIGVILGFNVRVLDEAEREASERGIKIFNEKIIYNLVRSYTDWVSYQKEHEDSILFN
                     EISPVCKFQFLKGYVFRRNDPAVFGAEILIGRLRQKIPVINENGKKIGSIHQIQEGGK
                     NLSEASIGTQVAVSMKEPVIGRQISEGDIFYTDLTSKEAKLLLESFSHRLGPEEQEVF
                     QHILSKKREADPSFGYI"
BASE COUNT         1347 a         1034 c          861 g         1549 t
ORIGIN      
        1 cgcttctcca gctgcccata gcccgtccat ttcagttctt ccatcgatgt ccgtgtgaat
       61 tccccccatc atatagtgac aaactggcct tatttctata ggttcattga caatatcaac
      121 tccagaaaat ttaataccaa tttctctaat tcccgcaagt cgttctttga tacgatcttc
      181 gctaatatgg gttaaatcca actttagaca ctcaactccc gtttcatgca caaagcccct
      241 tccttcttgt atctccatta tcatcgacct cgataccaca tcgcgtggcg caagttccat
      301 gttctttgga gcatatctct tcatgaatct ctcaccctca ttatttatca aataacctcc
      361 ctcacctctt gccccttcag ttatgagtat ccctgatggt atgatgcctg ttggatgaaa
      421 ttgtacgaat tccatatcct tcaaagcaag acctgctcta tatgccatat ctaaaccgtc
      481 tggcgtggag gaatacgcgt aggtggagaa gctatacatt cttcctgcac cgcctgtgca
      541 aattattcca gctagggcct taacaatgag gaaatcccca ctcttcattt ctatgaccgt
      601 caggcctgcg aaattgttgt taccatcatc aagtatagag gtacaaaacc attcattata
      661 aaaatgaata ttatcaaatt ttaaacaagt atcgtatagt gtctgcattt cgtagaatcc
      721 tactttatct tgtgcatatg ttgctcttgg gaaagagtat ccgccaaagt gacgctgatc
      781 aatcctacca tcagtctttc tcgaccaagg cattccccaa tcatcgagtt tgtagatttc
      841 atcgggcatt tgacgtacca gtcgctcagc aacatcttga tctgcaagaa agtcacttcc
      901 acgaatggtg tcgtatatat gagaagcttt gttatctcct tcatcttcaa aaagaaccgc
      961 ggccgtccca ccctccgcgg aaacggaatg cgatctcatg acttgcactt tcgaaataac
     1021 tcctatgctt aattttttat tagtctccgc acatgatata gcggcacgta agcctgcaag
     1081 ccctgagcct attattacga catcatggta aaggttgtca gtcatgcaac atcatagcct
     1141 ttaatctaac aacttcacgg cttagcatgc ccataaatag gtttgcggtt tacatataag
     1201 gaatattgtt catcgatcgg gataatttat ggccactcac tgtttagttc aacgtactac
     1261 ggataacatt acagtaatat taattaaatt gatttattag tcagatgtgc taacatcttg
     1321 aaaaaagtac tattaccgca tagataagtc aagtatctaa tccatcttag agtattgata
     1381 tttaagagat tcatatttca atcaacgaat ttagcagaac atcaaaacct cgtccatttt
     1441 ttttatgagg tcagttattt tgtgtttgct tgtctctccc ttactatttc taattgttac
     1501 tatttgattc ttaatttcgt cttggtccac tacgatgatt gctgatgccc ttctggaaat
     1561 agcttcatta atctgtttgt cgatacgcct acctttaaaa tcataatccg tagtgtatcc
     1621 actggtccta agatcggaaa ctattcgaat ggcataattt tttacatttt cggatgagta
     1681 aaccacataa atcagtggtt tacttttgag cttcatcaga ttgtggtttc tcatagccga
     1741 caatatcctt tcgacgcctc ctgcagcacc agtcgtgcca atatccttcc ttccaaatat
     1801 ttcggttaat ttgtcgtatc tacctcctcc aaccagtgca cctatagctg ttgatgggtc
     1861 aaatacttca aagaccaacc ctgaatagta atcaagtcct cgtacgacac caagattgag
     1921 ttgaacattc ttgactcctc ttgactttaa agagtcaaaa atttcgagtg tacttttcca
     1981 tccttcaaag gtctccaaaa tattaatgtc agggcaatct tcaggtttac ctttaaaatt
     2041 cgagaattct attagttgtc ttaactttga caaattcagt tttccctcgt actcttcata
     2101 tatctgttga ggtttttttt tagataattt atcaactgct cgtaacattt caccaatggt
     2161 ggagatggca gaaatttcca gtttttctct cacgaatctt tcaataatct gcctgtggtt
     2221 gatttcaaca actatttcga ggccaaggtt ttcaagaaac ttgtacacaa attcgataat
     2281 ttcagagtct gcttcattgc taaatgaacc aaatatttct acgtcccatt ggtgaaagta
     2341 tctgtatctg ccgaactgag gttcatcata cctccatacc ccgccaaagg atgcgagttt
     2401 ggtaggcatc ttcaattctc ttctttgtga gacgaatcga gagagcccaa ccgttagatc
     2461 gaatctaagt cctatcatgc gtccgccctt gtcagtaaag ctataggttt cattgctaat
     2521 cgagggccca cttttagctt cgagcgtaga aagcaactct aaaggagacg gttccataaa
     2581 gttgaaatta aatctctggg cggcatctat aaatttctgc ctcatcaatt cgatgtattt
     2641 tgattcttca aattctatgt ctctcattcc acgagggagc tcaattttca caattgtgag
     2701 gacatacggt tctcatttag attttgcgat taattatatt atcattccca gtaagcttgc
     2761 ttctgtgggt ggagggttta gatatctaga acacgttacc gatgcctacg tagaggcata
     2821 tggtcattcg atggccgagg ccttcgatta ttcagccaga ggtcttgtaa atttgatgtt
     2881 cgatatagat aatgccaacg aagagattcc aatcgagata agggtagagg gcgacgatat
     2941 aagtcacctg ctgtataatt ggttagagaa agtacttttg atcgttctag ttgagggact
     3001 tgtaatgtca aaatttgcgg tatcaatctc tctaaaatcg acttacaagt tggaggcacg
     3061 ttctatggcc gactctgtgg atttaataaa acataattac aaaacagaga tcaaaggaat
     3121 aacatatcac gcaatggaac taattcaaaa agataatttg gtaaagatac gctatattgc
     3181 agatttgtaa atttatttac cattcatccc acaaatagca gagaatagcc aacattgtca
     3241 ttcgttatgc gagaaagttt attccaaata ttccatagga tatcatatgt ttttggaaga
     3301 cctaggttaa atctaaagtg ttttcttaca agatttaaat atcaaataca actcatattg
     3361 aatattatga gttctcatac tagcagtaat cctccactga tagagttgtc agaaaaaaat
     3421 ttcgatgaag ttgttagttc tgacaagccg gtattagtag atttctgggc tacatggtgc
     3481 ggaccgtgtc aatttatgtt acctattttt gataaattgg cgaaaaaata tggtgataaa
     3541 gtttcttttg gtaggttgaa tgtagatgat aaccagggaa ttgcgatgag gttcgacgtg
     3601 tatgcaatac caacattcat cgtattcatg aacgggaaag ccgtagacaa ggcagttggt
     3661 gcagtgggtg aaaaaggact tgagggttta ttggaaaagt atcaatagga ttattcaata
     3721 atcattattt tccaattaaa tgtacccgaa cgacggatcg gcttcgcgtt ttttggatag
     3781 aatgtgttgg aaaacttctt gttcctcggg accaagacga tgggaaaagg attcaagtaa
     3841 taatttagcc tctttgcttg tcaggtcagt ataaaagata tccccctcac tgatctgtct
     3901 tccaatgaca ggttctttca tggaaactgc cacctgggta cctatagaag cttcagatag
     3961 attttttcca ccttcttgaa tttgatgtat tgacccaatt ttcttcccat tttcgttgat
     4021 tacgggaatc ttttgtctga gccttcctat cagaatctct gctccaaata ctgcaggatc
     4081 atttcttctg aaaacatatc ccttcaagaa ttggaactta caaacagggg atatttcgtt
     4141 aaacaatatc gaatcttcgt gttctttctg ataactaacc caatcggtat agctgcgtac
     4201 aagattataa atgatctttt cgttaaagat ttttatccct ctctctgagg cttctctttc
     4261 tgcctcatct aatactctaa cgttgaaccc aagaatcact ccaatatatc tatctttttc
     4321 cttaactgca gacgccgcta agacatccct tcgcgtaatg tgccctatat cggcagattg
     4381 gatgggaatt ttgtcctttc tcagtaggtc caccgtagct tctaaggaac cgattgtatc
     4441 acacctaagg actatcccat tcgaatcagt tcttattatt gctgctttaa tctcagattc
     4501 gactaatgat ctgagtcgcc cctcgtcttc accgtccttc agaacataca acggacttcc
     4561 tgccagaacg ccatctagct ccggtgaggt aatttttagt cctgctgcgg ctacgacatt
     4621 gtcaactggt ctaaacttat cacggggatc acgcatctca tctagtggtt taggtaaaag
     4681 aagggccttg actttagtaa caattgcatt gtcacgttta gctacaacca cccggtcgcc
     4741 ctgttttagc accccgtcga taagaatgat atttgcggaa ggccctaaac c
//
LOCUS       DATLQL010000678         1068 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2645720, whole genome shotgun sequence.
ACCESSION   DATLQL010000678 DATLQL010000000
VERSION     DATLQL010000678.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1068)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1068)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1068
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2645720"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..686)
                     /locus_tag="VNB68_06765"
     CDS             complement(<1..686)
                     /locus_tag="VNB68_06765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HVD37084.1"
                     /translation="MGFEILEFGFMQRALITGLAVAVTCSVIGLFLVLRRQSLFGDAI
                     SHVAFGGIAIGLFINLYPIWTAFIVSIFGALGITKLRESTKIPPDSAIAVLLTSGLAV
                     GVVLIGLAGGFTLDLYSFLFGSILLVSPQDTLTILVLSAAVLSIISVIYRKLLYVTFD
                     EQQAKVSGIQVTNLNYLFIVLASITVITSIRLVGVLLISSLVVIPNITAIMFGKGFKK
                     TLLISFLIAV"
     gene            complement(676..>1068)
                     /locus_tag="VNB68_06770"
     CDS             complement(676..>1068)
                     /locus_tag="VNB68_06770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37085.1"
                     /translation="DPKLLILDEPTTSIDQDTQDKFYALLKKLNQKNKISIIWASHDL
                     DAVNKLANKVACINRSMFFHGDAHEFFENDELLKTYSESAMQAHMHLHLRKEDRKGDN
                     SNSSNNNNSNSNSNNKGTNTGGQDYRGI"
BASE COUNT          339 a          216 c          188 g          325 t
ORIGIN      
        1 taaactgcga tcaaaaacga tattagtaag gttttcttga aaccttttcc aaacattatg
       61 gcagtaatgt ttggaattac aactaatgac gagatcagca gcactcctac caatcgaatt
      121 gatgtgatta ccgttatact agcaagtaca atgaaaagat aattaagatt tgtaacttga
      181 attccactaa cttttgcctg ctgctcatca aaagtaacgt acaatagttt tctataaatg
      241 accgatataa tagatagaac tgctgcactt aataccaaaa tcgttaaggt gtcttgagga
      301 ctcactagta ggatgcttcc aaataagaag ctgtacaaat caagagtgaa cccgccggct
      361 aaacctatca agacaacacc aactgcaagt cctgatgtca acaataccgc gatagcagaa
      421 tcaggaggga tctttgtgga ctctcttaat ttagtaatac ctagagctcc aaagatggag
      481 acaatgaatg cggtccatat cggatataaa ttgataaata agcctatagc gattcctcca
      541 aatgccacgt gtgatatagc atctccaaat agtgattgac gccttagcac aagaaacagg
      601 ccaattaccg agcaggttac agctactgca agaccggtga tgagagcacg ttgcataaaa
      661 ccgaattcaa gaatttcaaa tcccacgata atcttgccca cctgtattag tccctttatt
      721 attgctattg ctattgctgt tgttgttgtt gctgctgtta ctgttatcgc ccttcctatc
      781 ttccttcctt aaatgcaaat gcatatgtgc ttgcatagct gattcagaat atgttttcag
      841 caattcgtca ttttcgaaga attcatgtgc atcaccatga aagaacatgc ttctgttaat
      901 gcatgcgacc ttgtttgcta atttattgac cgcatccaaa tcatgagaag cccatatgat
      961 agatatctta ttcttctggt ttaacttctt taacaatgca tagaatttgt cttgtgtatc
     1021 ctgatcaata cttgtagtag gttcgtctaa aatcaataat ttaggatc
//
LOCUS       DATLQL010000679         1010 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2646025, whole genome shotgun sequence.
ACCESSION   DATLQL010000679 DATLQL010000000
VERSION     DATLQL010000679.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1010)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1010)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1010
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2646025"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            475..825
                     /gene="erpA"
                     /locus_tag="VNB68_06775"
     CDS             475..825
                     /gene="erpA"
                     /locus_tag="VNB68_06775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster insertion protein ErpA"
                     /protein_id="HVD37086.1"
                     /translation="MENAQQTHLINITPKAAEKVMEFMKQENKGNLYLRVYVSGGGCS
                     GLSYGMGFEEKADEDDALINENGVQVIVDSYSQKYMKGANVDYIESLMGSGFKINNPN
                     VTKSCSCGSSFSTD"
BASE COUNT          318 a          186 c          199 g          307 t
ORIGIN      
        1 acattagctg ccatgtcaga gaagaccgac aatgtaagtt acagtttttc cctctcaaaa
       61 tcttatcgat catttaaata gttactaatt aagtcttttg accgtttaga cgaagcgtta
      121 gtacctcgtt tatatacgaa cataaattaa attgtcacaa gagttcataa tattgggacg
      181 agcacgcgga atttgatatt ctattaagtc tcaagccatc aggaatgcct ttggaaaaac
      241 cctcccaatt tatgaaaagt agtatctatc atcgattgga caggaaatac taaattttgt
      301 gtcgtagtct atgaaatcac aatccagctg cggccctcgg catactgttg ttattcgagt
      361 gtgtaatttg tattatcagc accttatata gtctagtcta aactcgttta cgaacaactg
      421 cctcttttaa acataggcac aagattctta tattttattg atcgaataat ctatatggaa
      481 aacgcacagc aaacacattt aatcaatatc actcctaagg cggccgaaaa ggtaatggag
      541 ttcatgaagc aagagaacaa gggcaatcta tacttgcgtg tttatgtttc aggaggagga
      601 tgttcaggac tctcctacgg tatggggttt gaggaaaagg ctgacgaaga tgacgctctc
      661 attaacgaaa atggcgtaca agtcatagtt gatagctaca gccagaagta catgaagggg
      721 gctaacgttg actatatcga gagtttgatg ggttctggat tcaaaattaa caatccaaat
      781 gtaacaaaaa gctgctcatg tggaagttca ttttctactg attgacttca ttgcagacat
      841 ttttggtcta gcctaagata tctgtgcgta cacggctgtt gcgcagaaac tttaatgttg
      901 ccgacttgaa atctgtctct ggcgtgtact aattaccaaa tttttgttcc ctgataaccc
      961 ctaatttaaa aaaggactaa ccttagcagg tatacaataa tgtttgagtc
//
LOCUS       DATLQL010000680         1784 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1937175, whole genome shotgun sequence.
ACCESSION   DATLQL010000680 DATLQL010000000
VERSION     DATLQL010000680.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1784)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1784)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1784
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1937175"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(303..839)
                     /locus_tag="VNB68_06780"
     CDS             complement(303..839)
                     /locus_tag="VNB68_06780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin family protein"
                     /protein_id="HVD37087.1"
                     /translation="MPIDPDFPKNHQVTGKIQLADGEHFHFMWGPGKLAEAAENEEVK
                     AAYAARGEEIVPLGVSATMVAVDWDSCIADGACIEACPVQVFQWYRTEHDVPAKEAKN
                     QTWKGTGSTVKEERKDYTDKADAIREHDCIWCMACVSVCPPQAVKVDQSSLEFHEKAS
                     GTFNEALSKGSAPPPHAH"
     gene            complement(995..>1784)
                     /locus_tag="VNB68_06785"
     CDS             complement(995..>1784)
                     /locus_tag="VNB68_06785"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013227.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HVD37088.1"
                     /translation="ETYTINPLDLEEKITKRTRAIIPVHLYGHPAKMDEILEIASKHS
                     LFVIEDACQSFGSSYDGKQTGTLGEMGCFSMYASKVLTSGEGGAITTNNDDFAAKLRM
                     IRNHGMVSGYDTRIIGFNMRLPEISAAIAKTQMKKIQSMLDKRAINAKKLGELLTNKV
                     DNQDIVLPQENPRVIYNWYLYTVAFNNYRNKVKKLLNENGIGATIYYDPPVHQTPYYS
                     KFHNGELKITEWASRSVLSLPVHPSIRENDINFMVSKVGEALKS"
BASE COUNT          482 a          352 c          317 g          633 t
ORIGIN      
        1 tgtcttgcaa ttccttccat tgtttttctc gctatatctt taacattggt aatttccaat
       61 tcaccattga ccttatgatc cttaccaaag atgtaaaaag tcgcaatcaa ttcgtctttt
      121 tgggtaaagg gcaagtttgc ttttccattt ataaaattca aaactctatg gggaaaatct
      181 ctgggcataa aaactcccat atatgaatca gagataatca acttttgtct ttatagtacc
      241 taacacattg gactattaaa aagtagcaaa aataactacc ggaaaaaatg aggtaagatt
      301 acctagtgtg cgtgtggtgg tggagcacta ccctttgaca gagcttcatt gaatgttcct
      361 gaagcctttt catggaattc aagtgaagac tgatctactt ttacagcttg tggcgggcaa
      421 accgatacac aggccataca ccaaatgcaa tcatgttcac gaattgcatc tgccttgtcg
      481 gtataatctt tacgttcttc tttgaccgtg ctacctgttc ccttccatgt ttgatttttt
      541 gcctctttag caggaacatc atgttctgtt ctataccact ggaatacctg tacaggacat
      601 gcttcgatac aagcaccatc ggcaatacat gaatcccaat caactgctac catagtagcg
      661 ctcacgccaa gaggtacgat ttcttcaccc cttgcagcat aggcggcctt tacttcttca
      721 ttttctgcag cttcggcaag ttttcctggt ccccacatga aatggaaatg ttcaccatct
      781 gcaagttgta ttttaccagt gacttgatga ttttttggaa agtccggatc tataggcatg
      841 tttatcattt tgatctttgt ctgaatatta tataaaccat atgtgtaaag gtaagcatga
      901 tgcatattgc caaccttgac tatttaagaa ggaaatagaa taaaatttcg taagccttac
      961 tttgaagatt tattgatatt agctgaaatc ctatctaaga ctttagggct tctccaactt
     1021 tacttaccat aaaatttatg tcattttctc ttattgaggg atgtacgggt aacgaaagaa
     1081 cgcttctcga agcccattct gttatcttaa gttccccatt atgaaatttt gagtaatatg
     1141 gagtttgatg aactggagga tcataataga tggttgcacc gattccgttc tcatttagta
     1201 attttttgac tttatttcga taattattga aggccacggt atatagatac caattatata
     1261 ttactcttgg attttcttgt ggaagaacta tatcttggtt gtcaacttta ttagttaata
     1321 gttctcctag tttttttgcg ttaattgctc ttttgtccaa catggattga atttttttca
     1381 tctgagtttt tgcaattgct gcagagattt ctggtaatcg catattgaat ccaattattc
     1441 gtgtatcata tccacttacc attccatgat ttcttatcat tctcagtttg gctgcaaagt
     1501 catcgttatt ggtagtgatt gcgcctccct ctcctgaagt taagactttt gatgcgtaca
     1561 tgctaaagca tcccatttca ccaagtgtcc cagtctgttt tccatcgtaa gaagatccaa
     1621 aggactggca tgcatcttca attacaaata acgaatgctt gcttgcaatt tcgagtattt
     1681 catccatctt tgcgggatga ccgtacaggt gaactgggat tattgccctt gttcttttgg
     1741 taatcttctc ttctagatcg agagggttta ttgtataggt ttct
//
LOCUS       DATLQL010000681         2162 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_695782, whole genome shotgun sequence.
ACCESSION   DATLQL010000681 DATLQL010000000
VERSION     DATLQL010000681.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2162)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2162)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2162
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_695782"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            391..1563
                     /locus_tag="VNB68_06790"
     CDS             391..1563
                     /locus_tag="VNB68_06790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046912 - acyltransferase activity, acyl
                     groups converted into alkyl on transfer [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="citrate/2-methylcitrate synthase"
                     /protein_id="HVD37089.1"
                     /translation="MDARNIGLRNIEVADTRICAIDGENGKLIYRGYDILDLVSHSTF
                     EETCFLLLFGDLPTTSELLQFTSRLKETRTLNDGIYRNLKNRPTTATPMDILQSCAVE
                     LADYDPDIQDDTKETNVQRAIMLISTIPTIVAAWNRIRQGLEPLEPLEELTHAENFLY
                     MLFGERPTQEVAKIFDICLILHAEHSFNASTFAAREIASTKAHLYASISGAIGALSGS
                     LHGGANTQVMKMLLEIGERNIVENWVVKKLKDNEKIMGMGHAVYRTTDPRAEVLYRLS
                     KAIARERNTPWFDITEQIEKVTRKYFYENRKQSIYPNVDLYSASLYYSLAIPRDLNTA
                     IFAISRISGWSAHVIEEKFAEAAPKPALYRPKAVYVGRYCGPMGCEYNPIEKRPKA"
     gene            1700..1788
                     /locus_tag="VNB68_06795"
     tRNA            join(1700..1735,1753..1788)
                     /locus_tag="VNB68_06795"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1732..1734,aa:Cys,seq:gca)
     gene            1912..>2162
                     /locus_tag="VNB68_06800"
     CDS             1912..>2162
                     /locus_tag="VNB68_06800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37090.1"
                     /translation="MVAMPEQDKEIYSVHFARFAAKLEKHLLNHGVACNDADIIIEES
                     SVIFFERLNNPRKIISRLFKKQQPLQLFVESAFQAIAKH"
BASE COUNT          688 a          398 c          458 g          618 t
ORIGIN      
        1 atatacttat ctatgactaa tcgtcattat aatggatgct tcggtactca taatcgtcat
       61 cattaaattc agacggctct tccttcactt catcagcatc cactgatcta gtatgtggga
      121 caaaataaag tgtttcacta aattcaaatg attcctttta atttagaagc acttttcgta
      181 ataataggtg gaagacaacg gaggggcgtt cagactcggg caaaatcctc agttgcgtcc
      241 ataaaatact aagcattttg atcgccttga gagggccaaa cgacagcttg ttctgaacct
      301 gatatgtcct acctctacat aatttattga aaaacatgaa tatttagaaa acattagttt
      361 aatatataaa attgacacat tatagtttag atggacgcac ggaatatagg cttgaggaat
      421 attgaggttg ctgatactag aatttgtgct atagatggag aaaatggcaa gctcatttac
      481 aggggttatg atattttgga tttagttagc cattcaactt ttgaggagac ttgtttcctc
      541 ctcttgttcg gtgatttgcc cacaacaagt gaactgttgc aatttacttc tagattgaag
      601 gaaacgcgaa ctttgaatga tggaatttat agaaatttga aaaatagacc aacaactgct
      661 acgccgatgg acatcttgca gtcttgcgca gtggaacttg ctgattacga tcctgacatt
      721 caggatgata ctaaagaaac gaacgttcaa cgagccataa tgctaatctc aacaatccct
      781 acaattgttg ctgcatggaa caggataagg caagggcttg agccactgga gcccttagag
      841 gagcttacgc atgcggagaa tttcctatac atgctattcg gtgagagacc tactcaagag
      901 gtcgctaaga tcttcgatat ctgtctgata cttcacgctg agcatagttt taatgcttcc
      961 acatttgcag ctagagagat tgcctcgact aaagcccatt tgtacgctag tattagtgga
     1021 gcaattggag cactttcagg atcgctgcac ggtggagcaa atacgcaggt tatgaaaatg
     1081 ctccttgaaa tcggtgagag aaatatcgtc gagaattggg ttgtaaaaaa attaaaggat
     1141 aatgaaaaga taatgggcat gggtcacgcc gtatatcgaa caaccgatcc tagggcagag
     1201 gttctgtaca gactatctaa agcaattgcc agagaacgaa atactccttg gtttgacatc
     1261 accgaacaaa tcgaaaaggt aacaagaaaa tatttttacg agaacagaaa gcagtcaatt
     1321 tatccaaacg tggaccttta tagtgcttca ctatattata gtctggcaat acccagagat
     1381 ctcaataccg ccatttttgc gatatccaga atatctggct ggtctgcaca cgtaattgaa
     1441 gaaaaatttg ccgaagcagc gccaaaaccg gcactttaca gaccgaaggc agtttatgta
     1501 ggcagatatt gtggtccgat gggctgtgag tataatccaa tcgaaaagag acccaaggcc
     1561 taattaccgc atcaccagat ttcttatatc atatgtggcc aaaatgtgta atgcgcgaat
     1621 acgagataat gggattgtat tcgctcaaat taactagtga caaatgcttt aaattgagaa
     1681 ccaaatgcaa tttgagtaag gtggggtggc agagaggcta tgcgttcgcc tgcagcatgt
     1741 ctaatcgtag gtagcgaatc tataagggtt cgaatccctt ccccacctct ttttttgttc
     1801 ttgtttcagt gtacaattgg acctaatgct gtattaatca gatttgtgac acgatggaaa
     1861 gataaagata ataatgattt aattggtata attcgctgat agtaattact agtggtagca
     1921 atgccggagc aggataaaga aatttattcg gtacactttg ctagatttgc tgcaaagtta
     1981 gaaaagcatc tactcaatca tggagtagct tgcaacgatg ctgacattat aatcgaggaa
     2041 agttcagtta tctttttcga gagactgaat aatccccgaa agattatttc taggttattc
     2101 aagaaacaac aaccacttca gttgttcgta gaatcagcgt ttcaagctat agcaaagcat
     2161 at
//
LOCUS       DATLQL010000682         3341 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2647268, whole genome shotgun sequence.
ACCESSION   DATLQL010000682 DATLQL010000000
VERSION     DATLQL010000682.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3341)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3341)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3341
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2647268"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            84..638
                     /locus_tag="VNB68_06805"
     CDS             84..638
                     /locus_tag="VNB68_06805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HVD37091.1"
                     /translation="MSVAEYKHILRIAGKDIEGGKKLIVALSQVRGLGYNLSQVIVQS
                     LNINPNMRVGFLSEREIADIETAIRNPAQIGVPSFYLNRRKNMDTGLDTHLLTSDLDF
                     TISNDIEREKTVYSWRGYRHMFGLKVRGQCTRTSGRKAGAVGVKKLPKPGPAGAPGAP
                     AKETPPASGTSAPKAAPEKVEPSK"
     gene            651..1145
                     /locus_tag="VNB68_06810"
     CDS             651..1145
                     /locus_tag="VNB68_06810"
                     /inference="COORDINATES: protein motif:HMM:TIGR01018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HVD37092.1"
                     /translation="MGDPKKPKKSYRRPRRIWTSDQLSSELYVVGSYGLRNKKELWKA
                     QTKVANFRNQARTLLALTTEDRHGKESNLLSFLNRLALVKDSATLDDVLNLKIEDILE
                     RRLQTIIMKKMAIKSPLQARQVVVHGFVSVGNRKVNLPGYLVKREEEPQILVHLEVPQ
                     IAKE"
     gene            complement(1186..2154)
                     /locus_tag="VNB68_06815"
     CDS             complement(1186..2154)
                     /locus_tag="VNB68_06815"
                     /inference="COORDINATES: protein motif:HMM:NF024248.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HVD37093.1"
                     /translation="MDRKNLVYDGDHQSSTKEIGVLEKASHMRILSNPVAWRILNLLS
                     REPLYPSQIAKELKIYEQSAYYYIRKLLSIGAITHVETSMVRGGTAKFYRTSCPAFGL
                     EMDWGEERIEGKKKQTKYHKVQLFFEDFIKDGSFNGLIVVGAPDPHGPYRSSSRDGHY
                     AIHLAFLLGTFCGIPRNFSVKLDADAKAEKVTTAENIISIGGPGTNIITAEFNRFLPI
                     RFNENNFWSGLTSPSGKSYTLDNHGLIAKIRNPFNDKSNVIVLAGVRSVGTKSSIIGL
                     TNYADGILRNYKKDLNWALVVQGFDMDSDGKIDNVDILDEVFLPVP"
     gene            2337..>3341
                     /locus_tag="VNB68_06820"
     CDS             2337..>3341
                     /locus_tag="VNB68_06820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HVD37094.1"
                     /translation="MCSIIGYSGIGEVGPILVDGLQKMEYRGYDSVGIATLNNGKLLI
                     RKGIGKVAEVNASLGLKEMPGLLGIGHTRWATHGGVTDLNAHPHSACSANVAVVHNGV
                     IENYHELRDCLLKDGHVFKSQTDSEVIAHLLEHYWALKNDIKEAMIHTCNRLLGSFAF
                     VAIFEDSTLCGARYDEPLIIGIKPDGYFISSDVLGFLDYTDRAIFLDNRDIVMLEGNN
                     ISLINFDGDKVNRTPTQVAWELGSADKGRYTHFTLKEIYEQSQTIFTSIHQTKPNLET
                     FCDILAKAEDVFITGSGTSYHSALLAKHILSRYSKIRVESIMSSEFQYSSELLDKNSV
                     L"
BASE COUNT         1039 a          622 c          720 g          960 t
ORIGIN      
        1 atgattcagt caacatcaca agcgcattca agataaatga tgccagcatg gtttttattg
       61 cggaatatta gtttattgca ccgttgtcgg tagccgagta taaacatatc cttagaattg
      121 caggcaagga tatcgaggga ggtaagaaat taattgttgc tttaagtcaa gttagaggtt
      181 taggttataa tctttctcag gtgatagttc aatcgttaaa cattaaccca aatatgagag
      241 ttgggttctt gagcgagaga gaaatagcag acattgaaac agctattagg aatcccgctc
      301 aaattggtgt tccaagcttc tatctcaata ggcgtaaaaa catggatacg ggcttggaca
      361 cacaccttct gacttcggat cttgacttta ctatatccaa tgatatcgaa agagaaaaga
      421 ctgtgtatag ttggagaggt tacagacata tgtttggact gaaagttaga ggacagtgta
      481 cccgaacatc tggtagaaag gccggagctg ttggagtaaa gaaattgcct aagcctggtc
      541 ctgccggtgc acctggagct cccgcaaaag aaacgcctcc tgcgagcgga acaagtgcac
      601 caaaagctgc gcctgaaaaa gtggagccat caaaatagtc gtggtttaga atgggagatc
      661 caaaaaaacc taaaaaaagc tatagacgtc cgagacgtat ctggacctca gatcagctta
      721 gttcggagct ctatgtagtt ggttcctatg gcctgagaaa taagaaagaa ttatggaaag
      781 cccaaacaaa ggtggctaac tttcgaaatc aggccagaac tcttctcgca ttgactactg
      841 aagatagaca tggcaaagaa tccaacttgc tgtctttttt gaaccgactt gcattggtta
      901 aggactctgc cacccttgat gacgttctaa atctcaagat cgaagatatt cttgagagga
      961 ggcttcagac aattattatg aaaaagatgg caataaagtc tcctctgcaa gcaaggcagg
     1021 tggttgttca cggattcgta tcagttggga acagaaaagt gaatctgcct ggatatttgg
     1081 taaaacgtga agaagagccc caaatactgg ttcatttgga agttccacaa atagccaaag
     1141 aatagcgtaa aaaagtccac atattacata gttgccataa ggtcgttaag gaactggaag
     1201 aaaaacttca tccaaaatat ccacattatc gatcttgcca tcggagtcca tgtcaaagcc
     1261 ttgaactacc aaagcccagt tcaggtcttt cttataattt ctaagaatac cgtcagcata
     1321 atttgtgagg ccaatgatgg aagatttggt gccaactgat cttactccag ccaagacgat
     1381 aacattgctc ttatcattga atgggtttct tatttttgca attagtccgt gattatccag
     1441 agtataagat tttccgctag ggctagtcaa gccagaccaa aaattatttt cgttaaagcg
     1501 gattgggagg aagcggttaa attctgccgt tattatgtta gtacccggtc ctcctataga
     1561 tatgatgttc tctgctgttg taactttttc agcttttgca tcagcatcta atttgactga
     1621 aaaatttcgg ggaatgccac aaaacgttcc taatagaaag gcgagatgaa tagcataatg
     1681 accatctctt gaggaagatc tatatggtcc atgggggtcc ggggcaccta ccactattag
     1741 tccgttaaat gaaccatctt taatgaaatc ctcaaagaat aactggactt tgtgatattt
     1801 tgtttgcttt ttcttgcctt caatccgttc ctcaccccaa tccatttcca atccaaatgc
     1861 cggacatgac gttctgtaaa atttcgcagt gccaccacgg accattgatg tttcgacatg
     1921 agtgatagcg ccaatagaga gtagttttcg gatgtagtaa taggcgcttt gttcgtatat
     1981 ctttaattcc ttggctatct gagatgggta taacggctct ctagagagca aatttagtat
     2041 tctccatgcc accggatttg aaagtattct catatgacta gccttttcaa gaactccgat
     2101 ttcctttgtc gaggattggt gatcgccatc gtagacgagg ttttttctat ccaaacggac
     2161 tgttcttgcc ggcgaagatt atatatggat tttgtccgct atatgtaaat ttataagctt
     2221 tcaaacaaat tccttcttat ctattcccaa tatgtgtatg taaaacttat tgtagtggtt
     2281 agaatctatc ttcataagta ttttaagtaa gaattgtcga aaatctgcgt cttaatatgt
     2341 gttcaataat aggatattca gggataggag aggtcggtcc tatattggtt gacggactac
     2401 aaaaaatgga atacagaggg tatgatagtg taggaatagc caccctgaac aatggaaaat
     2461 tgcttataag aaaagggata ggcaaagttg cagaagttaa tgcatcgctg ggattgaaag
     2521 agatgccagg actattaggt ataggtcata caagatgggc cacccatgga ggagttacag
     2581 acctgaatgc ccacccacat tctgcttgtt cagccaatgt ggctgtagta cataatggcg
     2641 taatagaaaa ctatcatgaa ttaagagatt gcttgttaaa agatggtcat gtattcaaga
     2701 gccagactga tagcgaagtt atagcgcacc tcttagaaca ctattgggca ttaaagaatg
     2761 acattaaaga ggcgatgatt catacatgta accgattact gggttcattt gcttttgttg
     2821 ccatatttga agattcaaca ctgtgtggcg caagatacga tgagccgcta ataattggaa
     2881 tcaagcccga tggctatttc atttccagtg atgtgttggg ttttctagat tacacggatc
     2941 gcgctatatt cttagacaac agagatatag taatgttaga ggggaacaat atctctctaa
     3001 ttaactttga tggcgataaa gtaaaccgga ccccaactca agttgcatgg gaactggggt
     3061 ctgctgataa aggacgatac acacatttta ctctgaagga aatctatgaa cagagccaga
     3121 caattttcac aagtatccat caaacgaaac caaatctaga aacattttgt gatatccttg
     3181 caaaggcaga agatgtattc attacaggta gtggcactag ttatcattcg gcattattag
     3241 ctaaacacat cctgtctaga tactcaaaga ttcgtgtaga gtcaatcatg tcaagtgaat
     3301 tccaatattc ttctgaatta ctcgataaaa attcagttct c
//
LOCUS       DATLQL010000683         2036 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1585337, whole genome shotgun sequence.
ACCESSION   DATLQL010000683 DATLQL010000000
VERSION     DATLQL010000683.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2036)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2036)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2036
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1585337"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            481..>2036
                     /locus_tag="VNB68_06825"
     CDS             481..>2036
                     /locus_tag="VNB68_06825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase family protein"
                     /protein_id="HVD37095.1"
                     /translation="MNNKSRIDKIIQASRGNPKVITEDSAKEILSQYSINVPPYALVT
                     SSKDSISKARDIGFPLVAKIVSPDILHKTDVGGVKVGLNSEQEVKDAFEEMYFRLKEK
                     YDVTGVLLEKMVPPGVEIIVGLQNDSQFGPCIMVGLGGIYTELFKDVSFRVLPINKTD
                     ALEMLESLKGKSILKGFRGSKPIDLEMLATAIVNIGTLGTDMAGKYESVDFNPVVVYP
                     DNYYVVDAKIILRTLPSDDSISKSVPDSSYMDLFFNANSVALIGASPEAGKIGNSVLE
                     SLSKHQYKGKVYPVNAKGYPEIMGLKAYKSLSDISDAVDVVVVTVDLRFVPDLLKECG
                     RKNIHNMVVISGGGKELGGERAEIEKQVQTISKELKVRIIGPNCIGIFNAENGLDCAF
                     QGHARMLRPRKGKVAFLSQSGTIGIAFMETSDAFGLSKMISYGNRSDVDEADMIQYLA
                     EDPKTDVIGLYVEGLGDGRKFINAARRVIKDYKKPIVVFKNGRSVRGAKQAASHTGSL
                     GGSFAVINGA"
BASE COUNT          651 a          341 c          466 g          578 t
ORIGIN      
        1 tggatacttt attcatcaca actttatatt tagaataaaa tgataaagat gaggatttgc
       61 tcagcgtcaa aatggacttg attaaatggg gcttgttcta aatagcaata ataaaaatga
      121 atagataaac gctttagagg aattcttcta atttggagtg ggtcattaac aataggccaa
      181 gtttcaaaca cttgaataca aaactaaata ttttagtgaa agcatcaata tttattcgta
      241 aacggtcatt ttgtcctttt atccataaat ctaaaccgca tccgagatat gcacgaacgt
      301 gtcctccttt acacaaaacg tgggcggcct gccagtaaga cctgagaagt agtctggctt
      361 ttgtaaagaa tttggtcatt cccgaatcac ctgagccgtg tgtttttgag aaaataagat
      421 aaattctcga gaaaagttaa ttagaagcaa aggaagcctc tttgttcgtc tgagttagtc
      481 atgaataaca agagtagaat agataaaata atacaggctt ccaggggaaa cccaaaagta
      541 ataacagaag attctgcgaa agaaattctt agtcagtatt ctatcaatgt tccaccttac
      601 gctttagtta cttcctctaa agattctatc agcaaagctc gtgatattgg attcccgctt
      661 gttgcaaaga tagtttctcc tgatatttta cacaaaactg atgtgggtgg agtcaaggtc
      721 gggcttaata gtgaacagga ggtaaaggat gctttcgaag agatgtactt ccgacttaag
      781 gagaagtacg atgtgactgg agttttgctt gaaaagatgg tccccccggg cgtggagatt
      841 attgttgggc ttcaaaatga ctcacaattc ggaccttgta ttatggtggg acttggagga
      901 atttacaccg aattgtttaa ggacgtttct tttagagtct taccaataaa taagactgat
      961 gctttggaaa tgctagaaag cctcaaaggg aaatcgatac ttaagggatt caggggatca
     1021 aaacccatag acctggaaat gcttgcaaca gctatagtta atataggtac cctcggaact
     1081 gacatggcag ggaagtacga aagtgtagac tttaacccgg tagttgttta tccggacaat
     1141 tactatgtcg ttgatgcaaa gattatctta agaacgttac cgtctgacga ttcgatctca
     1201 aagtctgttc cagattctag ttacatggac ctcttcttta atgcaaactc ggttgcctta
     1261 attggtgcat ccccagaagc aggcaaaata ggaaactctg tgctcgagag tctctcaaag
     1321 catcaataca aagggaaggt ttatcctgta aacgccaaag gatatcctga aataatgggt
     1381 ttgaaagctt acaagagtct atccgatatt agtgacgctg ttgacgtagt agttgtaact
     1441 gtggatttac gatttgttcc agatttgcta aaggagtgtg gtcgtaaaaa tattcacaat
     1501 atggtggtca tatctggagg aggaaaagaa ttaggaggag aacgagctga aatagaaaaa
     1561 caagtccaga ccatttcaaa ggagctcaag gttcgtatta tcggacccaa ctgtattggt
     1621 attttcaatg cggaaaatgg tcttgactgc gcctttcagg gacatgcgag gatgcttagg
     1681 ccaaggaaag gaaaagttgc attcctctcc caaagtggga ctatagggat cgcgtttatg
     1741 gaaacatcag atgcatttgg attaagtaaa atgatatcat atgggaatcg ctcggatgtt
     1801 gatgaagcag atatgatcca atatttggct gaagatccaa agacagatgt tataggatta
     1861 tacgttgaag gtcttggaga cggacgtaaa tttatcaatg ctgcaaggag agtcataaaa
     1921 gactacaaga aaccgatagt ggtctttaag aacggacgtt cagtgagagg tgcaaaacaa
     1981 gctgcttccc atactgggtc tttgggaggt tcgtttgctg taatcaatgg tgcctt
//
LOCUS       DATLQL010000684         1239 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1050798, whole genome shotgun sequence.
ACCESSION   DATLQL010000684 DATLQL010000000
VERSION     DATLQL010000684.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1239)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1239)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1239
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1050798"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..202)
                     /locus_tag="VNB68_06830"
     CDS             complement(<1..202)
                     /locus_tag="VNB68_06830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HVD37096.1"
                     /translation="MKAARIIKPKESLQVQDLDIPKATGSQVVVKVRSSGVCHSDIHL
                     WEGGYEGIEGQFLKATDRGVTYP"
     gene            complement(305..>1239)
                     /locus_tag="VNB68_06835"
     CDS             complement(305..>1239)
                     /locus_tag="VNB68_06835"
                     /inference="COORDINATES: protein motif:HMM:NF012402.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HVD37097.1"
                     /translation="RNAKASPETSWVTDLKSYAVVVDEKGGEITVETDPTGYGNLQNH
                     NKSVRSQQTTVDEEIVPTIPLKLELKLLEKIPKNGTDVMSFKFSKSDDHNHLKYRAGQ
                     FAIIDLGTKEDPKGPLRSFTMASSPTEDVIQITTRIRDTPFKMKLATLEIGSTAKITS
                     PLGKFVLPDDDSKSVVFLSGGIGVTPFRSMTRYATDKHVPSKVTMFDSNRNVENTLFK
                     EEFDDCLKRNNNLKIVYTITEEEQSKNVEEWKGERGFINEAMLTKYLTRNELDNSIFY
                     ICGPPGMLKAMQKLLELDLNIPKLHIKIEEFTGY"
BASE COUNT          327 a          255 c          206 g          451 t
ORIGIN      
        1 gtggataagt tacgcctcta tcagttgcct taagaaattg tccctcaatt ccttcataac
       61 caccttccca tagatgaata tcactatgac agactccaga tgagcgaacc tttacaacga
      121 cctgagaccc cgttgcctta ggtatatcga gatcttgtac ttgtagagat tcctttggtt
      181 ttataatcct cgcagctttc attatagttc aatcattctc aaaatatatt caggcaagca
      241 atataatact atttttacac cagcgataat taattacgac ttccaacgaa aatatacatt
      301 tatgctagta gccagtaaac tcttcgattt ttatgtgcag ttttggaata tttaagtcaa
      361 gctccaacaa tttttgcata gcttttaaca tcccaggtgg accacagatg taaaatatgg
      421 aattatcaag ttcatttctt gttaaatatt tagttagcat tgcttcgttt atgaatcctc
      481 gttcaccttt ccattcctcc acatttttgg attgctcttc ttccgtaatg gtataaacta
      541 tctttaggtt attgttacgt ttcaagcagt cgtcaaattc ttctttaaat aacgtattct
      601 ccacattcct gtttgaatca aacattgtta cctttgaggg aacatgtttg tctgtagcat
      661 atcttgtcat acttctaaat ggcgtaactc ctattccacc tgaaagaaat actacggatt
      721 ttgagtcatc atctggtagt acaaatttcc ccaagggtga ggtgatcttc gctgtggatc
      781 caatctctaa ggttgctagc ttcattttga aaggtgtatc tcgtattctt gtagtaattt
      841 gaataacatc ttctgtaggc gacgaagcca tggtgaacga acgtaatggt ccttttggat
      901 cttcctttgt tcccaagtct attattgcaa actgtcctgc ccgatacttt agatgattat
      961 ggtcatcact ttttgaaaac ttgaaggaca tgacatctgt tccgtttttt ggtatcttct
     1021 ctagcaattt tagttctaac tttagtggta ttgttggcac gatttcctca tcgactgttg
     1081 tttgctgact gcggacagat ttattatgat tttgaagatt accataacca gtaggatctg
     1141 tttctactgt tatttctcca cctttttcgt caaccacaac tgcatatgac tttagatctg
     1201 taacccaact tgtttcaggc gatgccttag cattgcgta
//
LOCUS       DATLQL010000685         1449 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_162417, whole genome shotgun sequence.
ACCESSION   DATLQL010000685 DATLQL010000000
VERSION     DATLQL010000685.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1449)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1449)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1449
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_162417"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..187)
                     /locus_tag="VNB68_06840"
     CDS             complement(<1..187)
                     /locus_tag="VNB68_06840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37098.1"
                     /translation="MLQSPGQSVFEAIFSSYCSKQSQYGNLKLIIRIIIDKSKLTGSD
                     EKRSKTKKERYGSNTLQY"
     gene            complement(493..684)
                     /locus_tag="VNB68_06845"
     CDS             complement(493..684)
                     /locus_tag="VNB68_06845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37099.1"
                     /translation="MFDILNTTSTTVLMETTYRLLPCGIPHSTISTALMETRTIKDDE
                     RIRTGCEGMEWHPKTPPDA"
     gene            961..1296
                     /locus_tag="VNB68_06850"
     CDS             961..1296
                     /locus_tag="VNB68_06850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37100.1"
                     /translation="MDNPNEQIRGANKELRTRLMRIVTKKNLTSQFPRGDSSSILEIV
                     DVLINNAIISREGRSRESAEIITNMGVRVDRGEIITPVEFSNGNYTDAIAWFDSTLQN
                     VEDQFVDTL"
BASE COUNT          459 a          262 c          298 g          430 t
ORIGIN      
        1 cgtattgtaa ggtgtttgag ccgtatctct ctttttttgt cttacttcgt ttttcatctg
       61 acccggttaa cttagattta tctattatga ttctaataat cagctttaga ttcccatatt
      121 gcgactgttt agagcaatat gaagaaaaga ttgcctcaaa tacagattgt ccaggcgatt
      181 gaagcattta gcctcgccgg caacaatagc ccctggcaac acaagaatat ttgcagactg
      241 tcagaatcaa gaaagacctt gccataagac ctctaccttc aagtcagcca aaaggccttg
      301 gagccctgaa gagtgacaat atatctatct taaatactgg tactagcgaa cttacttttg
      361 caggcttata tcaaactcaa agagaaggaa attaaagtag gaaagggaaa aaagaagatc
      421 atggcagaac aggcagtatt acgatgtttg acttgaattc tgcaaacgag ttctgcaaaa
      481 cctaggctgt cgttaagcat caggaggggt ttttggatgc cattccatac cttcacaccc
      541 cgtcctgatt ctctcgtcat cctttattgt tctagtttcc attagtgcag ttgaaattgt
      601 cgagtgtggt ataccacaag ggagcaatct atacgtagtt tccattaaaa cggtagtcga
      661 tgtagtgttc agtatatcga acactagaag aagccttctg ttgctattgc tgctcccaaa
      721 catgcttgag cagtctggag gaaaaagata gtccacagga tatgcatgtc acatatcttc
      781 ccttttctcc tacctctctc tattttacat aaagacaaaa tgtttaggga tggtcattag
      841 gattgtaacg gatccccaac gatcttagtt gattatgtta ccaaattctt attggcaatc
      901 aggtcatttt gattgtcggt taggaaaatt actatgagcc atactgctag gagatgggat
      961 atggataacc ctaatgagca gatacgtggt gcgaataaag agttacgcac tagattaatg
     1021 cggatcgtca caaagaagaa tctaacttca cagtttccta ggggggatag ctcatcaatt
     1081 ttagagatcg tagatgtgct aatcaataat gcaataattt caagagaagg acgatcaagg
     1141 gagtctgctg aaataatcac gaatatgggg gttagagttg acagaggaga gataattaca
     1201 ccagttgagt ttagtaatgg aaattatacc gatgcaatag catggtttga tagcacatta
     1261 caaaacgtag aagatcaatt cgttgataca ttataaaaac tatttttgag tgtaatatca
     1321 cttctttata aggacgtagt ctagctcttg ctgcctcaaa ggtaatagga cataattttt
     1381 attgcataaa gtagcatttc gaaacgatgt agtagatatg gcatcatcac aagaaggacc
     1441 aataataat
//
LOCUS       DATLQL010000686         1535 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_341598, whole genome shotgun sequence.
ACCESSION   DATLQL010000686 DATLQL010000000
VERSION     DATLQL010000686.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1535)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1535)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1535
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_341598"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            611..940
                     /locus_tag="VNB68_06855"
     CDS             611..940
                     /locus_tag="VNB68_06855"
                     /inference="COORDINATES: protein motif:HMM:NF002258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31e"
                     /protein_id="HVD37101.1"
                     /translation="MSESEESLTRVYTIRLGKAWGTPQYRRTDRVLNMIKEFAKKHMK
                     TDKIKIEQDLNRYVWRKGKTNPPRTVRVRMIREDDVVIVSSFTEPRIAEETKDQGSEI
                     SNGKDPE"
     gene            complement(1055..>1535)
                     /locus_tag="VNB68_06860"
     CDS             complement(1055..>1535)
                     /locus_tag="VNB68_06860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37102.1"
                     /translation="DLSLEECFSITNKTLVHIIKLMPSINLPPGKRIISTSSSEELGV
                     ENALRDSLAMLYSSSDPDSLGKSFLYINNEIAGSIGNLNSIIDKLRKIQNIDRNAEID
                     LSPSRTFDRPVNLVTLVEGHSKFDSYDPLAIIPGDSCLDWEIPESHPDIVLPLSNIE"
BASE COUNT          517 a          277 c          304 g          437 t
ORIGIN      
        1 ctcacgtgta cgaatttgga gttgcacctc aatcaactat atggaaattc acatgcacca
       61 tgtgatccac gtggacctac cttgattcgt tgactttgta ccatcagtca gttttttgtg
      121 gtaaatgctc ttgcatgtcg ctatcttcat ttcttcctcc gacataaggt gaacactttt
      181 catcttcttc tcgtcgtaaa tagtagcaag aaatttaaaa caaattaggc aaactgattc
      241 ataacccaac gtggatttct ttgcactaat agtgtcatag aattattatt cattacccct
      301 tcatcatcca cagttttgta tccaatattc aaatcaatgg tggacactca acgtgataac
      361 tttaacaata aggattggag agagattctc gttcagacca acacttaaaa ggaggaatat
      421 taaaaatgat taaaatggct gcacgaaaga atacatctag aaagaagcga ttgatcaaac
      481 gcatcaaaca gaataggcca gtgccagcct gggtaattat tagaactcat cgtcatgtca
      541 ggactaatcc aaaacgcaga gcgtggagaa agtcagatgt aggtgtagga taattttgga
      601 gtgagattgg atgtccgaga gtgaagaaag tttaacgcgt gtttatacga taaggttggg
      661 aaaggcatgg ggtactcccc aatacaggcg aaccgacagg gtcttgaata tgataaagga
      721 atttgcaaag aaacatatga aaacagacaa aataaaaatt gaacaggact tgaataggta
      781 cgtatggcga aaaggcaaga ctaatcctcc gcgaactgtt cgagttagaa tgataagaga
      841 agatgatgtg gtcatagtga gttccttcac ggaaccaaga attgctgaag aaacgaaaga
      901 tcaagggtct gaaataagca atggcaaaga tccagaatag ttatttttca tagtaacagt
      961 cgaaatctag actttcttac aagaaaatct ctacaaagct aatttggaat atcatgtatc
     1021 ttttatttca tgaagaaccg tagcaatcga ttcactattc aatattactc agtgggagaa
     1081 caatatcagg atgagactct gggatctccc aatctagaca gctatctcca ggaattattg
     1141 ctaacgggtc gtaagaatca aactttgagt gcccttctac caaagttacg agattaaccg
     1201 gacgatcaaa agtacgagat ggagaaagat cgatttccgc gttcctgtca atattttgaa
     1261 tcttcctcag cttatctata attgaattca aatttccaat agaacctgca atttcgttat
     1321 ttatatacaa gaatgatttt cctagtgagt ctgggtctga tgacgaatag agcatagcaa
     1381 gagaatccct cagcgcattt tccacaccaa gttcctctga actgctggta gagattattc
     1441 tctttccagg tgggagattt attgaaggca tcagttttat aatatgaact aaagttttat
     1501 ttgttataga aaaacattct tctagtgaca aatca
//
LOCUS       DATLQL010000687         2365 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1405930, whole genome shotgun sequence.
ACCESSION   DATLQL010000687 DATLQL010000000
VERSION     DATLQL010000687.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2365)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2365)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2365
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1405930"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            134..514
                     /locus_tag="VNB68_06865"
     CDS             134..514
                     /locus_tag="VNB68_06865"
                     /inference="COORDINATES: protein motif:HMM:NF013450.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37103.1"
                     /translation="METEIVVLRDFDNLFMKRKELRLILKNAAGRITKTDAINLIAAK
                     NNIEKKTIVPISMNCSYGKPDVDASFYIYESEAAMKDSLPKHRNLRLLGKAERKKIIE
                     DEKAAKLKAKQAALESSKSGRKNK"
     gene            560..763
                     /locus_tag="VNB68_06870"
     CDS             560..763
                     /locus_tag="VNB68_06870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S27ae"
                     /protein_id="HVD37104.1"
                     /translation="MKNTDKKKGGETQIFKFYEVSDDKLVRKKRDCPRCGRGVFMAEH
                     SDRSTCGKCGFTEFVQKTKTKKS"
     gene            complement(1107..2240)
                     /locus_tag="VNB68_06875"
     CDS             complement(1107..2240)
                     /locus_tag="VNB68_06875"
                     /inference="COORDINATES: protein motif:HMM:NF044739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37105.1"
                     /translation="MMQLSERLIKSFVVCNRCLIRQTGKVISSEPVGGESKGCYICKG
                     LWERMESITRAAKSTGNKHDFNTFLIGLTIPTSMSEREDQLRSMYKIRGRETIKTTFT
                     RAIRQRFIELSGKYLDLLHPDIIIIIYIGDDVNDEFRLSVRSKPLTLRGVYKKNNRQI
                     FLQCIGPLPCSRDNPCSIEDILRWKLLSETGAESVSFSWFGKEDKESLVLGKGRPFYA
                     TLKNPRRRYLKHDLRFESNDIRVRIHKEPAFLPRHLPPLINKIRVVVSCGENEKIEPT
                     ELKVLNKKEIICVKFLNKNANNIKLIYSMSARHLDMRRFLLTMICDGGLPVKRFIDGY
                     EQTMPNVADLVDKHCKCDVFDILDLSVQEDSINQSEIELNCSR"
BASE COUNT          749 a          441 c          444 g          731 t
ORIGIN      
        1 tggattgaat agtgcattgt catagctgaa tgctcaagct agaaatcttg gctgcagatg
       61 aaatctaaat tctggcgtga tattttactc aagtaatcct tatatgagca cccaggggtg
      121 ctattagatt actttggaaa cagaaattgt ggtactacgg gactttgata atctattcat
      181 gaaacgaaaa gaacttcggt tgatattaaa aaatgcagca ggacgaatta ccaagactga
      241 tgctataaac ctgattgccg caaagaacaa tattgagaaa aaaacaattg tcccaatcag
      301 tatgaattgc agctatggaa agccagatgt agatgcgtca ttttacatct acgaaagcga
      361 agctgctatg aaggattctc tacctaagca tagaaatttg cgcttgctgg ggaaagcaga
      421 aagaaagaag attattgaag atgaaaaagc tgcgaaattg aaggctaagc aagcagcatt
      481 agaatcctct aaatctggca ggaagaataa gtaggagtat attgggttga taagtattga
      541 gtaggggagg aggatcagtt tgaaaaatac agataagaaa aaaggcggag agacacaaat
      601 ttttaagttt tacgaagtgt ccgacgacaa acttgtaagg aaaaaacgag attgcccaag
      661 gtgtggaagg ggggtcttca tggctgagca ttctgataga agcacttgtg gtaaatgcgg
      721 ctttactgag tttgttcaaa agacaaagac caagaagagt tagtccagat ggaatgatct
      781 tggtaacttt ttttagtgca agattttcct aattgaattc atgtcaggcg atatgccatt
      841 tttgaggtag caagccgctg tccaaaatgc gctatcacta tatcacttca atccttacat
      901 attaataaaa gaagtcggtc aatccatttt catagaggga aatgtcgttt cacaatatta
      961 tgaataaaat tcacaaccga tttctagttt tttatttcgt gttcaagata tgaaaacatc
     1021 agagtttctt aaagtcgtag attgagttca tggaaatctc gattccataa accttaaaga
     1081 aggatccggg ctatcgcatc tattctttac cttgaacaat tcaattcaat ttctgactga
     1141 ttaatagaat cttcctgaac tgacaagtcc aaaatatcaa agacatcaca cttacagtgt
     1201 ttatcaacta aatctgccac gtttggcatc gtttgctcgt atccatctat gaatcgttta
     1261 acaggcagac ccccatcaca gatcattgtt agtagaaacc ttctcatgtc taaatgcctc
     1321 gcagacatag aatagattaa cttgatatta tttgcatttt tgttaaggaa cttaacacat
     1381 attatttctt ttttgttcaa gactttcaat tcggtgggct caattttttc attttctcca
     1441 caactgacaa caacacgtat tttgtttatg agcggaggta aatgcctagg caaaaaagca
     1501 ggctctttgt ggatcctaac acgaatatcg tttgattcaa aacgaagatc atgcttcaga
     1561 taccttcttc tgggattttt cagggtagca taaaatggtc ttccctttcc taaaactaaa
     1621 ctctctttat cttcttttcc aaaccatgaa aaagaaacag actcagcccc ggtttcagat
     1681 agtaacttcc atcgcaaaat atcttcaata ctgcaaggat tgtctcttga gcatggaaga
     1741 ggacctatgc attggaggaa tatctgacgg ttattctttt tgtaaacacc tcttagtgtc
     1801 aaaggtttgg atctcacaga tagccgaaac tcatcgttaa catcatcgcc gatgtaaata
     1861 ataataatta tatctggatg aagaaggtct aaatatttac cactaagttc aatgaacctc
     1921 tgtctgatcg ctcgtgtaaa tgtggtttta atagtttctc ttcctctgat cttatacatc
     1981 gatcttagtt gatcttctct ttcggacatt gaagtgggaa ttgtcagtcc gataagaaag
     2041 gtgttaaaat catgtttatt gcctgtagat tttgctgctc tggtaataga ctccatcctt
     2101 tcccacaatc ctttgcaaat gtagcaacct ttgctttcac ccccaacagg ctctgatgaa
     2161 ataaccttac ccgtctgcct gatcaaacac ctgttgcaaa ccacaaaaga tttgatcaaa
     2221 cgttcagaaa gttgcatcat gagtttaacc gatgcctagt cttctgagca ttccatgcat
     2281 ttgtcttccc tttgattgct tcatcattgt cttggaatta ttgaaatttt taaccagatc
     2341 tttaacatca tgctccatta ctcca
//
LOCUS       DATLQL010000688         1381 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2298444, whole genome shotgun sequence.
ACCESSION   DATLQL010000688 DATLQL010000000
VERSION     DATLQL010000688.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1381)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1381)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1381
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2298444"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(640..909)
                     /locus_tag="VNB68_06880"
     CDS             complement(640..909)
                     /locus_tag="VNB68_06880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018003564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37106.1"
                     /translation="MQTNSNNNGSSCDVRVHAYKNGKTWEQCKEEARKNTELLSEEIL
                     KKGELSWARILEAADYDELVYKLTLKYLRQKGYDIGYNKTPRVKA"
     gene            complement(1117..>1381)
                     /locus_tag="VNB68_06885"
     CDS             complement(1117..>1381)
                     /locus_tag="VNB68_06885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37107.1"
                     /translation="ICLKFIVSYQWKYAIDVGRIATLHTPVIIHRKDQCVQNAISLSI
                     GLLTTIMTTFPRHNSMDLKRRGIFLRLAMLPGVHKRENEEKKS"
BASE COUNT          390 a          269 c          267 g          455 t
ORIGIN      
        1 tattatcggt tatgtttcta aacctcccta ctattatgta gtatttctaa taatggctat
       61 tgatgattgt tcgtgtcata gatgctatgg caatggccaa tcatggctgg tcttttatcc
      121 cccgacggaa taagaaccat aattttggat gctaaacaac attttgaaga ttaatacaag
      181 attgaaccat caatgtgaca aaacattcag actaatatga ataccatcct tgaagcatga
      241 catgagaaaa agaggaagat tagctgtaag gtaaaaatag cgcaaggcct tgtggtgatt
      301 ggtttgagag gataaaagct atcgcactcg cggttggagg agaagtaaaa acagtcgcaa
      361 gcgtgctttg gagtttattc atagacagct tttccttcgg aaatatactt tttgatcctt
      421 ctgccaggaa gcggttctgc agtagtagga tgggtaggct gagaagttgt ttactccata
      481 acctttccta cagtttctgg tttcttgtgc cctatagtct gtccaaaatt caattagtaa
      541 ctgacggatt gcaacacatc aaaatattgc aggacagtaa ctcgacatta gtcatcaaac
      601 atctatttct atccgacatc aggagatgag gatatgatat taagctttaa ctcttggagt
      661 tttattataa cctatgtcgt atcctttttg ccgaagatat tttaaagtta atttgtaaac
      721 caattcatca tagtctgccg cttctaatat tcttgcccac gaaagttcgc ccttctttag
      781 aatctcttcc gagagtaatt ctgtattttt tctggcttct tctttacatt gttcccaggt
      841 cttgccattt ttatatgcat ggacgcgaac atcgcagctg ctgccattat tattactatt
      901 ggtctgcatc tttaccatag aagctaacag aaaccagtaa taataatcat gatagccgct
      961 tgcttcattt ttttctctgg atctaaaagt gatagtatat gagaggtaga agtaggatgt
     1021 atccggtcgg gacctaatgt cccagtcaga ggatagatat cagattccta tatcggagct
     1081 cgactggtcc agttggttct agcttggttg aaaacgctat gactttttct cctcattttc
     1141 tctcttgtgc acgcctggca acatagccaa ccttaagaag atgcctctcc tcttcaaatc
     1201 catactattg tgtcttggaa aagttgtcat tattgttgtt aatagcccaa tggataaact
     1261 gatagcattc tgtacacatt ggtctttcct gtgtatgatc acaggagtat gtaatgtcgc
     1321 tatccgcccc acatcgatag catacttcca ttgatatgat actataaact tgaggcagat
     1381 a
//
LOCUS       DATLQL010000689         1424 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_523960, whole genome shotgun sequence.
ACCESSION   DATLQL010000689 DATLQL010000000
VERSION     DATLQL010000689.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1424)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1424)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1424
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_523960"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..693
                     /locus_tag="VNB68_06890"
     CDS             <1..693
                     /locus_tag="VNB68_06890"
                     /inference="COORDINATES: protein motif:HMM:NF014419.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37108.1"
                     /translation="ARKIARLDPDVMGQMNVSDGDLIEVISKSTTELFTVLALIPTDT
                     SSGVIRLDRGARDILGTGIGDTIFVKRAEYRNNTALEGSKINSPPSTGAEEHSIESRA
                     TLLISGSCIDFENQRHKIMDYLNTLAMEVHMESNCKCYSEGKKTLGWDFFQISFPLQL
                     VEKIQQIHPEIDKHEGNTLEDRFVIWLSERMKKKQLEYHLKISEIPYEAVSGFRLDPK
                     NYQNANDRDDLK"
     gene            862..>1424
                     /locus_tag="VNB68_06895"
     CDS             862..>1424
                     /locus_tag="VNB68_06895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37109.1"
                     /translation="MTIDIPPSIAEYLNQNIKGRIALIGCRAQDVENSFECCEYDIAL
                     LDPNDPLDRVVELEDSVIEFLNFSSRGNQHRMQLESMIPIGYKNMPLFSPSFSSTNVS
                     TDRIFMGQSKKMIVNALFNIERADSHKESNVELSSLHLKIAAYHLLEGILFSSGIRPM
                     PTHELNQIRTLDEPNEAFATAFKSGLD"
BASE COUNT          460 a          268 c          298 g          398 t
ORIGIN      
        1 gctcgaaaaa tagcgcgatt agatccagat gtaatgggtc agatgaatgt ctcagatggc
       61 gatcttatag aggtgatcag taaatcaact accgaattat ttacagtcct tgcactcatt
      121 ccgaccgaca ctagttccgg agtcatacga ttggaccgtg gtgcaagaga tatactaggt
      181 actggaatag gagatacgat cttcgttaaa cgtgctgaat atagaaacaa cacagcactt
      241 gaagggtcaa agataaattc accaccttct acaggtgccg aggaacactc catagaaagc
      301 agagcgaccc tattgatttc aggatcttgt attgactttg agaatcaaag acacaagatc
      361 atggattact tgaatacctt agcgatggaa gttcatatgg aaagtaactg taagtgttat
      421 tctgaaggaa aaaaaacact gggatgggat ttttttcaga tctctttccc attgcaactt
      481 gtggaaaaga tccagcagat tcatcctgag attgacaagc atgaaggtaa taccctagaa
      541 gatagatttg tcatttggct atcagagaga atgaaaaaga aacaactgga atatcatctg
      601 aagataagcg aaattccgta tgaagcagta agtggattca gattggatcc taagaattat
      661 caaaatgcaa atgacaggga tgacttgaaa tagatgtcat tattttctat gcgctttttt
      721 cttcttttcg tcagtggcaa cctgaaatag aattccaata atgcgtgctt gtataacacc
      781 tattccgtag ctttgtcaga tacaaacttg gcctaatgcc cctgagttgg cttcaaataa
      841 gtctagtcaa tttagtagga catgactata gatattcctc cgtcaattgc agaatacctt
      901 aatcaaaata tcaagggtag aatagcactc atcggttgca gagcacagga tgtagaaaat
      961 tctttcgagt gctgtgaata tgatattgcg ttgcttgatc ctaacgatcc gctcgatcga
     1021 gtggtcgagc ttgaagacag tgtgattgaa tttctcaatt tttcgtcccg tggaaaccaa
     1081 catcggatgc aattggagag catgatacct atcggataca agaatatgcc cctcttttcc
     1141 cccagcttca gtagtacgaa tgtttctaca gatagaatat tcatgggcca atccaagaaa
     1201 atgatagtaa atgccctatt caatatagaa agagctgaca gtcacaaaga atcaaacgta
     1261 gaattatctt ctttgcattt gaaaatagct gcttatcacc ttttggaggg tattttgttt
     1321 agttctggaa ttagaccgat gccaacacac gaattaaacc agattagaac tcttgacgag
     1381 ccgaacgagg cattcgccac agcattcaag tccggacttg attg
//
LOCUS       DATLQL010000690         1103 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1940501, whole genome shotgun sequence.
ACCESSION   DATLQL010000690 DATLQL010000000
VERSION     DATLQL010000690.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1103)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1103)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1103
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1940501"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1103)
                     /locus_tag="VNB68_06900"
     CDS             complement(<1..>1103)
                     /locus_tag="VNB68_06900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37110.1"
                     /translation="EKTQPEKKFINLFLIVDHDFMDDLWIRLAQLPSIRHSGGILELR
                     MPVSNSDRWRLVCNMPIPRRTIVDYWRRQVYSWIRNSSSRYPSKSDKSVFLKNLEEFW
                     HEVEGSYSGAKSYSDFNAFLISRLLNLMWGYDTLFVRLPDLSPVFEDGFKFLISNFGT
                     YSRALSETENMFIRQGINTGVSATSYLNATVWLHCKCGSKASAKIIKNQEEVLLVGTC
                     ISCKKDLQVNLGKLSNLDIPQEDIHQLSPRAIPILLLLSRDLGISSYASGTGGSMDYA
                     MVGSVAFQELSIKIPLTMVWPSKDLYTGLGQSEALDYLEITNKTEVTIHKEELKRKVE
                     DYSTKIKPLLAERSTRIKSRQSVNDLLSELFIL"
BASE COUNT          326 a          231 c          204 g          342 t
ORIGIN      
        1 tttagaataa ataactctga aagtaaatcg ttaaccgact gcctggactt tattctggtt
       61 gatctttctg ctagaagggg ttttattttg gtgctataat cctcgacttt tctctttagt
      121 tcttctttat gtattgtaac ctcggtttta ttggttattt ccaagtaatc aagagcttca
      181 gattgtccca agcctgtata aagatcctta gaaggccata ccattgttag cgggatttta
      241 atagacaatt cttgaaatgc cacgcttcct accattgcat aatccatgct tccacctgtc
      301 cctgatgcat aggagctaat ccctagatct ctggaaagaa gtaacaggat agggatggct
      361 cgaggagaaa gctgatggat atcctcctgc ggaatatcaa gattgctcag cttacccagg
      421 tttacctgca aatccttttt acatgatata caagtaccca caagtagaac ctcttcctgg
      481 ttttttatga tcttagccga agccttgctg ccacatttac aatgtagcca aacggtagca
      541 ttcaaatatg atgttgcgct gacgccagtg ttgatacctt gacgtataaa catattttca
      601 gtttcactta atgctcgtga atacgttcca aaattggaga tcaagaactt gaatccatct
      661 tcaaaaacag gtgatagatc aggtagtctc acaaacaagg tatcgtaccc ccacattaaa
      721 ttgagcaatc tagagatcaa aaaagcatta aagtcggaat aggatttggc acctgaatag
      781 gagccttcaa cctcgtgcca aaactcctct aaatttttta aaaagactga cttatcagat
      841 ttggatggat atctagatga ggaatttctt atccatgaat aaacctgtct tctccaataa
      901 tccacaattg tccttcttgg gataggcatg ttgcatacca agcgccatct gtcggaatta
      961 ctaacgggca tcctaagttc aagtatccct cctgaatgac ggatactcgg taactgcgca
     1021 agacgtatcc aaagatcatc cataaaatcg tggtcgacga tcagaaacag attaataaat
     1081 tttttttctg gttgagtttt ttc
//
LOCUS       DATLQL010000691         2557 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2299041, whole genome shotgun sequence.
ACCESSION   DATLQL010000691 DATLQL010000000
VERSION     DATLQL010000691.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2557)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2557)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2557
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2299041"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..453)
                     /locus_tag="VNB68_06905"
     CDS             complement(<1..453)
                     /locus_tag="VNB68_06905"
                     /inference="COORDINATES: protein motif:HMM:NF042555.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6659 family protein"
                     /protein_id="HVD37111.1"
                     /translation="MRAEEFSKNILGVDPQIRFAGIMEKSGHLYAGGMREGKEEYLRG
                     RSPEISFAQTAYVVDLRKMFSSELGELKYVVYAHDKVKLFSIVVKDHILVFSAESTAD
                     IEDLTKKVLEYVESVKADLSLYPPANVVNNEKKEILRNLHESGMSEDII"
     gene            649..1413
                     /locus_tag="VNB68_06910"
     CDS             649..1413
                     /locus_tag="VNB68_06910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenine-N1)-methyltransferase"
                     /protein_id="HVD37112.1"
                     /translation="MKIEQGFYVLFFHTPRKKWLIRVEPEKRLHTHLGIIDVSSVIGL
                     EYGSSIETTQGSVIYLIRPTTHDFIMKSERKTQIIYPKDLGFIVARTGLENGSMVLEI
                     GTGSGALTTFMASIVRPNGHIYTFDVNENFMEIAKRNLEKAGVIDYVTMNRHDPHEGI
                     DVTDVDIAIVDLGDPWTLIREVRKALKGSGSFVAICPTVNQLERTAFELKENDYVDID
                     CVELMIRNIEARQGMTRPSMRMIGHTTYLIFARKVK"
     gene            complement(1498..2037)
                     /locus_tag="VNB68_06915"
     CDS             complement(1498..2037)
                     /locus_tag="VNB68_06915"
                     /inference="COORDINATES: protein motif:HMM:NF014678.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF192 domain-containing protein"
                     /protein_id="HVD37113.1"
                     /translation="MGRITQPVNIVATIALFSALVLSVYFIMNPFAFNYHKAFTNLVE
                     GALGSTSLSKYGKAIATVNNFQVAADVANTEEQQSKGLSVRDKMQENEGMLFVFGGPS
                     KQAFWMKDMKFPIDIIWLDKNGNVVHQELKVQPCVASATCPTYTPDSDSTYVLETVAG
                     FSQTHDIKIGTHIDLRIAS"
     gene            complement(2188..2484)
                     /locus_tag="VNB68_06920"
     CDS             complement(2188..2484)
                     /locus_tag="VNB68_06920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATP synthase subunit F"
                     /protein_id="HVD37114.1"
                     /translation="MRVIAIGSRVFVTSFKLAGVEGMKVDSSAQALSQLNQLNSTTDV
                     GLVLLSDDIGKEIRNQLTDLRTKKPIPLIFELPSPGSSKHDVDYRALLKQILGV"
BASE COUNT          763 a          504 c          498 g          792 t
ORIGIN      
        1 tattatatcc tctgacattc cagattcatg aagatttctt aagatctcct tcttctcgtt
       61 gtttactaca ttagccggcg gataaagtga tagatctgct ttcactgatt caacgtattc
      121 taagaccttt ttagttagat cttctatgtc tgctgtgctc tctgcagaaa acaccaatat
      181 gtggtccttg actactatac tgaacaactt tactttgtca tgtgcataga caacatactt
      241 tagttcgcct aactctgatg aaaacatttt tctcaaatca acaacatatg cagtttgagc
      301 aaaacttatt tctgggcttc ttcctctcaa atattcttct tttccttccc tcatacctcc
      361 agcgtacaga tgtcctgatt tttccattat cccagcaaac cttatctgag gatcaacacc
      421 aagtatattt tttgaaaatt cctctgctct catcctttat acactttata cacacaggta
      481 catacaggta tagatatctt ctttgataaa aatttttatc ctgtccaagc gaataagcac
      541 cgcggaatat ggtaatattt taacgagcag gaggatataa gggaaaaaat ggaagttttt
      601 atctaggaat gatttttatc acctgtaact tttgtgttat tgctgccaat gaagattgaa
      661 caaggcttct acgttttatt ttttcatact ccaagaaaga agtggttgat tcgggtcgag
      721 ccggagaaga gattacatac tcacttaggt ataatagacg tctcatcggt aattggactg
      781 gaatatggtt cgagcataga aacaacgcaa ggcagcgtca tatatcttat tagacctaca
      841 actcatgact ttataatgaa atcggaacgt aaaacccaaa ttatatatcc aaaagatctt
      901 ggcttcattg tggcaaggac tggtctagaa aatggatcga tggtattaga aattggaact
      961 ggaagtggtg cgcttactac atttatggca agtattgtac gacctaatgg acatatttac
     1021 acctttgatg ttaatgaaaa tttcatggag atcgcaaagc gcaatttgga gaaggctggg
     1081 gtaattgatt acgttacgat gaaccgtcac gatcctcatg aaggcattga tgttaccgat
     1141 gtcgacattg caatagtgga ccttggcgat ccgtggactt tgatcaggga agtacgtaag
     1201 gcattaaaag gtagcggttc atttgttgcg atctgtccta ctgtcaatca actggaaaga
     1261 accgcgtttg aacttaaaga gaatgattat gtagatattg attgtgttga gctgatgatt
     1321 agaaatatag aggcaaggca aggaatgact aggccctcaa tgaggatgat aggacatact
     1381 acttatctta tattcgcaag aaaagtgaaa tgaacatcaa cacatctagg catagcaaaa
     1441 aaagaaaata gcggtttgaa agtaataata aaagactcta aagcagcttt tagtccttca
     1501 cgaagcaata cgtagatcga tatgagttcc tatcttgata tcatgcgttt gagaaaatcc
     1561 tgctacagtt tctaacacat acgttgaatc gctatcagga gtataggttg gacaggtggc
     1621 agatgccaca caaggttgca cttttagttc ttggtgcact acattgccat tcttgtctag
     1681 ccagataata tcgatcggaa acttcatatc cttcatccaa aaggcttgct tagaaggtcc
     1741 tccaaaaacg aataacattc cttcattttc ctgcattttg tccctaacac ttagaccctt
     1801 actctgttgt tcttcagtgt tagccacgtc agccgctact tggaagttgt tcacggttgc
     1861 tattgctttc ccatacttgc ttaacgaagt gctgcctaat gctccctcca cgagattcgt
     1921 aaatgcttta tggtagttga aagcaaaggg attcattatg aagtaaacag acaaaactaa
     1981 ggcagagaat aatgcgatag ttgcaacaat gttgaccggc tgagttattc ttcccattat
     2041 ctctatgctg ggctccttga tatttagagt tagttctttc cgtaagcaat taatgaccag
     2101 gtaaatttag agatgccagg gttaaaaagc agggatttga tatttttgat cgcacttcta
     2161 caatacacgg aatccaaacg cacgatctca tacgcctagt atttgtttca gcagggctct
     2221 ataatctaca tcatgtttag agctacccgg cgaagggagc tcaaagatta aaggaattgg
     2281 tttctttgtc cgcaaatctg taagttggtt acgtatttcc ttgcctatgt catcacttaa
     2341 gagtacaagg cctacgtcgg ttgtactatt gagctgatta agctgcgaaa gcgcctgtgc
     2401 agaagagtcg accttcatcc cttccacccc agctaacttg aagcttgtaa caaacacacg
     2461 actaccgatg gcgataactc tcaatatgtc gtccttacgt ggtagatttg gaacccctat
     2521 taattctttt taacataagg agtaattgat attagcc
//
LOCUS       DATLQL010000692         4045 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1588085, whole genome shotgun sequence.
ACCESSION   DATLQL010000692 DATLQL010000000
VERSION     DATLQL010000692.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4045)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4045)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4045
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1588085"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..720
                     /locus_tag="VNB68_06925"
     CDS             <1..720
                     /locus_tag="VNB68_06925"
                     /inference="COORDINATES: protein motif:HMM:NF024634.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin family protein"
                     /protein_id="HVD37115.1"
                     /translation="KPLEFFGDPYWVRNYRDKADKNAKMVIDTILRNSRIGDKLIAHY
                     QKAEKLTQEAAIAKLEGLAPLAKNPKARNPTTASAAAGPSTGPKPVSSSSSAAQLQQT
                     PQAPAAIATAGAAGDTTISLTGTGTNYSGVEGPIDPEFKSKRQVVGTFQGIKVWGPID
                     PPGQIGIWGTEVTVDFDICIADGACIEACPVDVYEWLETPGHPSSEKKPFMIREKDCI
                     FCMACENVCPPQCVKIFQKGM"
     gene            855..3014
                     /locus_tag="VNB68_06930"
     CDS             855..3014
                     /locus_tag="VNB68_06930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose synthase family protein"
                     /protein_id="HVD37116.1"
                     /translation="MLGLGAFLYTIFISAAWIMTIYTLNFYYLSYQSRHNQKHEKLRH
                     ENIQLNQDNALPVVTIQLPLFNEKYVARRLIDAVCKLDYPKHKLQIQVIDDSDDETVE
                     LIKKTFDEYQRKGFDIVHLRINQNRSGYKAGALKDGMKYAKGEFIAIFDADFVPPYWF
                     LKKTLGHFVDPKVGLIQCRWGHINENYSTLTAAQAVSLDLHFLIEQKAKSLSHLFMNF
                     NGTAGIWRSSCINDAGGWHTGTLVEDLDLSYRAQMKGWKSLFLEDVVVDAELPVQMNA
                     AKRQQFRWAKGSIQVALKLLLDLISERKLPVDTKVQAFIQLTRHVVHPLFLIQFIVFP
                     ILLALDFKLYTVSWAPVTGLLIYVLMGPATYLYIIRKIWGDKWKDKAKQYLFLIFFAT
                     GISVNNTVAVFDALLRHNSEFLRTPKFGILKKGDDWKDKEYVLPFTKTTLLEAFFGLY
                     GCIAIFISIFSRNPVFVPIIAIQTVGFIYIAYFSMLHSSYNTRSKTVQPDLSRIRMIA
                     GQRDRDKNVELLEVETNSLNTIGDVNVTTESRCNKKGGKNSMTSNSRIVLVVLLGFLA
                     FGAAVAYAGYQITIYPIDKALGYLSRSQSAQTPEMMTGYIKMIKALLPMKGNAVWSFP
                     NPRTDFGLIQDDLNAILSRTQSLSSIERNSAAYNTGLEDLHGTLKIIESNLEEASPYL
                     YVSFTNVLLSCVWITIILLMFFLIMKKRTKYTEYNSA"
     gene            3398..4036
                     /locus_tag="VNB68_06935"
     CDS             3398..4036
                     /locus_tag="VNB68_06935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37117.1"
                     /translation="MSVEEQIYTRILSAGTLGVKKTDLRKEFAGVEIDSVIENLVNVG
                     SVFIEKRGVAYTCWHKDHYLQNLLNTDPKFRLTIDAIRSLQISFNKTSDSLLKFADTL
                     ANDNLVYKQTRKTVEGNTLEPLANDKTSMQLEEFEHLFDIAVTNNSDSIGWVELAKIR
                     QQICKDHLITNEYFYSLVEEVINSYCDKYELSSGGSEGVTMRGLLHGLVRCI"
BASE COUNT         1284 a          760 c          823 g         1178 t
ORIGIN      
        1 aaaccactag aattttttgg cgatccgtat tgggttagaa attataggga taaggccgat
       61 aagaacgcta aaatggtcat cgacaccatc ctccgaaact caagaatcgg tgacaaatta
      121 attgcccatt atcagaaggc agaaaagctt acccaagagg cagcaatcgc aaaactagaa
      181 ggattagctc ccttagctaa gaatcccaag gcgcgaaatc ctacaactgc gtctgctgct
      241 gcaggaccat caacaggtcc taaacctgtt tcttcatcct cttctgcagc ccaattacaa
      301 caaacgcccc aagctccagc agcaatagca acagcgggtg cagctggtga cacgaccata
      361 tcacttacag gtactggaac taattattct ggcgttgagg ggcctattga tcctgaattt
      421 aaatcaaaga gacaggtggt tggtactttc cagggcataa aagtttgggg cccaattgac
      481 ccaccaggtc agataggcat atggggtaca gaagtgactg tagattttga catatgcata
      541 gcagatggtg catgtattga agcctgtcct gtggatgtat atgagtggtt agaaacacca
      601 ggacatccat cgtcagagaa gaaacctttc atgataaggg aaaaagattg tatattttgc
      661 atggcatgcg agaacgtatg tcctcctcaa tgtgtaaaaa tatttcagaa aggtatgtaa
      721 aagtcagcta gtaatgaaca atcatataat ctatcaataa tccttcataa ccagctgtgg
      781 tatactttct tgaaaagacc gtggtgtgaa tataaatatg tgttctgata actttttggc
      841 taggacgggt tcagatgctt ggactaggtg cattcctcta tacaatattc atctctgcag
      901 cttggataat gacaatttac actcttaact tttattatct gtcatatcag tcaagacaca
      961 atcagaaaca tgaaaaacta agacacgaaa atatccagct caatcaggat aatgcactgc
     1021 ctgtggttac aattcaactt ccacttttta atgaaaagta tgtagcgcgt agattgatcg
     1081 acgcagtatg caaacttgat tatccgaagc acaagttgca aattcaagtt attgatgatt
     1141 cagatgacga aacagttgaa ttgataaaaa aaacgtttga tgaatatcaa cggaaaggct
     1201 ttgacattgt tcacctccgg ataaatcaaa atagatctgg gtataaagct ggtgctctga
     1261 aagatgggat gaaatatgcc aaaggtgagt tcatagcaat atttgatgca gactttgttc
     1321 caccttattg gtttctaaaa aaaacgctag gtcactttgt ggacccaaaa gtaggtttaa
     1381 ttcaatgcag atggggacat atcaacgaaa attactctac cctgacggcg gcccaggcag
     1441 tgtcgcttga cctccatttc ttaattgaac agaaagcaaa gagtctatcg catttattta
     1501 tgaattttaa cggtacagcc gggatatgga gaagctcctg tataaatgac gcaggtgggt
     1561 ggcacacagg tacgttggtt gaggatctcg atttgagcta cagggcccag atgaagggtt
     1621 ggaaatccct attcttggaa gatgtagtcg tagacgcaga gctccccgtc caaatgaacg
     1681 cagccaagcg ccaacagttt cgatgggcaa agggatcaat acaggttgcg ctgaagctgt
     1741 tactcgatct aataagtgaa agaaaattgc cggtggatac caaagtgcag gcctttattc
     1801 aattgacaag acatgtggtt catccgttgt ttctaattca atttatcgta tttcctatcc
     1861 tgctagccct ggatttcaaa ttatatactg tcagttgggc tccggtaact ggccttttga
     1921 tttatgtgct gatgggtcct gcaacctacc tctacataat aagaaaaata tggggcgaca
     1981 aatggaagga taaggctaag cagtatttgt tcttgatatt cttcgcaaca gggatatctg
     2041 tcaataacac tgttgcagta tttgatgcat tgctgaggca taatagtgaa ttcttacgaa
     2101 ccccaaagtt tggaatactt aaaaaaggcg acgactggaa ggataaggag tatgtcctac
     2161 cttttaccaa aacgactctt ctcgaagcat tctttggact ttacggatgt attgcaatat
     2221 ttatctccat cttttcccgg aatccagtct ttgttcctat tatagcaatt caaaccgttg
     2281 ggtttatcta catagcatat tttagcatgt tacattcttc gtataataca agatcaaaga
     2341 cagtgcaacc ggatttgagc cggataagaa tgatagctgg acagcgggat cgtgataaga
     2401 acgttgaact ccttgaagta gaaaccaata gtctaaatac tattggagat gttaatgtca
     2461 ctaccgagag caggtgtaac aaaaagggcg gtaaaaatag tatgacttca aacagcagga
     2521 ttgtgctagt ggtgcttttg ggttttctgg cctttggagc tgctgttgct tatgctggat
     2581 atcaaataac tatatatccc atagataagg cgcttggtta tctatctcga agccagtcgg
     2641 ctcaaacacc tgagatgatg acaggatata taaaaatgat taaagcttta cttccaatga
     2701 aaggaaatgc cgtatggtct tttccaaatc ccaggacaga ttttggttta attcaggatg
     2761 atctgaatgc tatactttct cgtacacagt cactttcatc aatagaacga aatagcgctg
     2821 catacaatac tgggttggaa gatttgcatg gaaccctaaa aataatcgaa tcaaatcttg
     2881 aggaagccag tccttacttg tatgttagtt tcactaatgt acttttgagc tgtgtatgga
     2941 taaccataat cctcttgatg ttctttctca ttatgaaaaa gagaacaaaa tatacagaat
     3001 ataatagcgc ttaatttgtg ccaaatgctg cgaacctacg ctattaacct aaagaattta
     3061 aatgctgtca gattctactt gtccacgaaa aagatacttc ttgttttgta aagacaaatt
     3121 caatttacat atcatatgaa gctcgcaata gtgagataat ctgtattaat tcgttgtcta
     3181 gacagttcga tatattctgt ttattcatta tttttatgaa tgaaaatttg gtcagttacc
     3241 ctagtacttt catcatagct cagaaataga tatcatcatc ccgccctcaa tattaattaa
     3301 acctattata acccttattg tgagtttaat tttgtttatc aaagattcag cagcatgtca
     3361 cctgtcaact taaataataa ttctaaagat tttcctcatg tcagttgagg aacaaattta
     3421 cacgcgaatt ctttctgccg gaacactcgg tgtaaaaaaa accgatcttc gcaaagaatt
     3481 cgcaggagtt gagattgata gtgtgataga aaatcttgtc aacgttggct ctgtctttat
     3541 cgaaaaaaga ggagtagcat acacgtgttg gcacaaagat cattatcttc agaatttatt
     3601 aaataccgac cccaagtttc gattgaccat cgatgcaata agatccctcc aaatatcgtt
     3661 taacaaaact tcagattcat tattgaaatt cgcagacact ctggccaatg ataatctggt
     3721 atacaaacaa acaaggaaaa ctgtcgaagg taatacatta gaacccctag cgaatgataa
     3781 aacatcaatg cagcttgagg agtttgagca tctctttgat attgctgtta cgaacaattc
     3841 cgattcgatc ggttgggtcg aacttgcaaa aatcaggcaa caaatttgta aagatcatct
     3901 cataaccaac gaatatttct attctcttgt agaagaggtc ataaattctt attgcgacaa
     3961 atatgagttg tcgagtggcg gtagcgaagg tgtaactatg cgtgggctac ttcatggttt
     4021 ggtcaggtgt atttgattgt atcca
//
LOCUS       DATLQL010000693         1551 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2650247, whole genome shotgun sequence.
ACCESSION   DATLQL010000693 DATLQL010000000
VERSION     DATLQL010000693.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1551)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1551)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1551
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2650247"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..193)
                     /locus_tag="VNB68_06940"
     CDS             complement(<1..193)
                     /locus_tag="VNB68_06940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcdA"
                     /protein_id="HVD37118.1"
                     /translation="MVESSILVSGLAGLASFLSPCILPILPAFVSYLSGTTINEIQND
                     SPATINEIRRVNAKPSDISG"
     gene            790..1425
                     /locus_tag="VNB68_06945"
     CDS             790..1425
                     /locus_tag="VNB68_06945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37119.1"
                     /translation="MEIQIIIDIFSGRENPVIELEGDEAKETLEGLKPSRKLKKDDLG
                     IPPSSTLGYRGLIIKQKGKKSESKDLPKTFRLVNGDLFGPRLSHRATDENYEDFFCSP
                     RGPTRKINLGRNFPGFLRKEITQFHELRKKYRPKPYPWPLEFNVDVRPSMSQIGGMME
                     ARYNSIIIATIMAATIEQIHTDSLDVQLVQCTLHSLALLWTNSIILVVALR"
BASE COUNT          513 a          290 c          300 g          448 t
ORIGIN      
        1 ttccacttat atcactaggc tttgcattca ctcttcgaat ttcattgata gtagctggtg
       61 aatcattctg aatttcgttg atggtagttc cagacagata tgacacaaat gctggtaata
      121 taggaagaat acatggggat aaaaaggaag ctaatcctgc caatccggaa accaagatac
      181 ttgattctac catttagctc tcttccattc caaagtcagc agcgatgaat tatcatcgtt
      241 attactgcca accataaatt aaaacatctc cggaaactat taatactttt ttccagattt
      301 ttgccagatt acatccaatt catataaact ctaaaaacgg ttctaatcga acgctgctat
      361 atagatatga ttactgacgt ataatttgaa ctaggcaaca gctgataaaa agtcgtaact
      421 ggaggcctag cttacaactg taaagagaaa gatgtatgta atgttcgttt cgcaagctat
      481 ccagattcct caagtacaac ggtagagtgt ttaattgata acaacagctt tggtcctctt
      541 cctttcagtg gtgctattga tcaatagcat ttcagccatc ttaccagagg aggacatcat
      601 tttaggattc gccagatgaa tggatctttc ttcttctata gtcttgtagt ttacaaggtt
      661 taacaattag agaacttttt gtccctatct ttagtgggag ctaaaattga aactagccag
      721 taatttagct cgcatgattc aacttatata tcacagagat atttgaatat ctaaaattgg
      781 taaagtaaga tggaaattca aataattatt gatattttca gtggtagaga gaatccagtt
      841 atagaacttg agggagatga ggctaaagaa acactggaag ggctgaaacc ttcccgcaaa
      901 ctaaaaaaag atgatcttgg tatacctcca agctcaactc ttggatatag agggctaata
      961 attaaacaaa aaggcaaaaa atcggaatca aaggatcttc caaagacttt tcgattagtc
     1021 aatggagatt tgtttggtcc taggctttcg catcgagcta cagatgaaaa ctatgaggat
     1081 ttcttctgta gtccaagagg gccgactaga aaaataaacc taggaagaaa ctttcccgga
     1141 tttcttagaa aagagattac acaatttcat gaattgcgca agaaatacag gccaaagcca
     1201 tatccttggc ccctagaatt taatgtagat gtgcgcccct ctatgagcca gattggtgga
     1261 atgatggagg ccagatacaa ttcaataata attgctacaa ttatggcagc aactatcgaa
     1321 cagatacata cggacagcct ggacgtgcag ctggtgcaat gtacacttca ctctcttgcg
     1381 cttctgtgga ccaacagcat tatccttgta gtggctctgc gttgatggaa tcacaatata
     1441 catgacctcg gcaaagataa caaaagaaac cctacgatca gaaggaggtg agtattgctt
     1501 cttacatcag taggtggttt taaaagcaaa gctgcctata tatctatgac a
//
LOCUS       DATLQL010000694         1291 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2650962, whole genome shotgun sequence.
ACCESSION   DATLQL010000694 DATLQL010000000
VERSION     DATLQL010000694.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1291)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1291)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1291
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2650962"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            173..541
                     /locus_tag="VNB68_06950"
     CDS             173..541
                     /locus_tag="VNB68_06950"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HVD37120.1"
                     /translation="MKILVIEDNVEISEALSFFCGPRKDIGCEVVNTGQEGLDRIRAE
                     NFDLILLDLAMPDFSGMDVLLSLKLDGLIKLRNIVIFTASSNQDLLHEIIDIGVKEIF
                     KKPFSLDDLIKLIEKYRPRA"
     gene            complement(684..890)
                     /locus_tag="VNB68_06955"
     CDS             complement(684..890)
                     /locus_tag="VNB68_06955"
                     /inference="COORDINATES: protein motif:HMM:NF022410.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sporulation protein Cse60"
                     /protein_id="HVD37121.1"
                     /translation="MVAVQLIESPNIISLQTEINKFLESIDKTDLIDIKLTSPQKDSV
                     APPAKYGAMIIYEPKANIDSKGLR"
     gene            complement(922..>1291)
                     /locus_tag="VNB68_06960"
     CDS             complement(922..>1291)
                     /locus_tag="VNB68_06960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37122.1"
                     /translation="KLKTRNYGTERISSEGKNIVEVELKRIATMVKKIPDKNAKEQAK
                     LLGLSTIDVDIKSNPLAFNVLKNFVANMILEQVEGKPGKINYERIISGIVNYIMTFCI
                     GYKAASLQSTKKASQKRKQK"
BASE COUNT          360 a          226 c          273 g          432 t
ORIGIN      
        1 agagaatacg gagaggagga gatgaaacta aagaatgcta tgggcgagta ttcagaagaa
       61 gacagaggga aaagagccct tactcctctt atgtgattca tgtcgccaag gccttaggat
      121 attgcctaca tatttcacac gataagccag cgttcgaggg tgagtattta atttgaagat
      181 tcttgtaata gaagacaacg tcgagatatc agaggcgttg agtttcttct gtggtccgag
      241 gaaagatatt gggtgtgaag tggttaatac tggtcaagaa ggattggata ggatccgagc
      301 agagaatttt gaccttatct tactagattt agcaatgcct gactttagtg gaatggacgt
      361 acttctttca ctgaaactag acggattaat aaaattaaga aatatcgtta tctttaccgc
      421 ttcatcaaat caagacttac tccatgaaat catagatatc ggtgtcaagg agatattcaa
      481 aaaacccttt tcgttggatg acttgataaa attgatagag aaatatcgtc ctcgcgcttg
      541 acacttcgga atcgggagag cggaaagttg acagatgaag aaataggggt acggatgctt
      601 aattgtgatt actgtcgcag acgaataagc gtatctaccg tagccgatat tatagcttct
      661 gtaataccag ttgtgctgag aactcaacgc aaccctttag aatcgatatt tgccttaggt
      721 tcgtaaatta tcatagcccc atattttgca ggaggggcaa ctgagtcttt ttgtggactt
      781 gtcagtttta tatctatcaa gtcagtttta tctatggatt caagaaattt gtttatctct
      841 gtttgtagcg atataatatt cgggctttct attagttgca ctgctaccat attcgctatc
      901 acggggggat gtcaaattta attatttttg tttccttttt tgtgacgcct ttttggtaga
      961 ttggagtgaa gccgctttgt agccgataca gaatgtcata atatagttta ctattcctga
     1021 gattattcgt tcgtaattaa tttttccagg cttcccttcg acctgctcta atatcatgtt
     1081 ggctacaaag ttcttcaaaa cattgaaggc aaggggattg cttttgatat ccacgtctat
     1141 tgtagacaaa cctagtaatt tcgcttgctc cttggcgttt ttgtctggta tctttttcac
     1201 catagtcgca atccttttca attcaacttc aactatgttt tttccctcac ttgaaattct
     1261 ttcagttcca taatttcggg ttttcaattt g
//
LOCUS       DATLQL010000695         1261 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2651306, whole genome shotgun sequence.
ACCESSION   DATLQL010000695 DATLQL010000000
VERSION     DATLQL010000695.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1261)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1261)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1261
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2651306"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..234
                     /locus_tag="VNB68_06965"
     CDS             <1..234
                     /locus_tag="VNB68_06965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37123.1"
                     /translation="KKNPDVYFLVDIADRGVRGKARAKVIDDPEYAKKITSRNLVRYM
                     GSAETPEAKDRIELAKNYSAIEVYPYFIASWKA"
     gene            283..801
                     /locus_tag="VNB68_06970"
     CDS             283..801
                     /locus_tag="VNB68_06970"
                     /inference="COORDINATES: protein motif:HMM:NF024304.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HVD37124.1"
                     /translation="MVSNSTSGNDVKSHSLTTAEINKILSMTLIANLATLGEDNTIHI
                     VPMWFIRIGNDICIPTSRHTRKYKNLRAKPFASVMIDISRAGLDLKGVLIKGQVELVE
                     GDEARKINRQIHLKYVTPEGLSDQSVASYLSKGDDVTVRIHMDDLVNWNLAQSKAGIA
                     LSDKGRSRKLDV"
     gene            complement(1001..>1261)
                     /locus_tag="VNB68_06975"
     CDS             complement(1001..>1261)
                     /locus_tag="VNB68_06975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37125.1"
                     /translation="ETLLMMSREYSLPVILDLFDSWLNVSNLQYDRESSEGSLTYIIN
                     HGLGRKWSLFLEKVFWYMVKDLEITGATFDVTDGTVTFKINL"
BASE COUNT          410 a          242 c          247 g          362 t
ORIGIN      
        1 aagaaaaatc ccgacgttta ttttctagtg gacattgccg atagaggagt gcgtggcaag
       61 gccagagcta aagtcatcga tgaccctgaa tacgcaaaga agattacttc gcgtaatcta
      121 gtaagatata tgggttccgc cgagactcct gaagcaaagg acagaattga attggcaaag
      181 aactatagcg ctatagaggt ttatccctac tttatagcta gttggaaagc ttgatagtaa
      241 tattataaaa ttcagagtgc ctttaattag agaggactag caatggtatc caattccact
      301 tccgggaatg atgttaaatc acattccctt accaccgctg agatcaacaa gatcctttca
      361 atgaccctca ttgctaattt ggccactcta ggtgaagata acactatcca tattgttccc
      421 atgtggttta ttcgcattgg taacgatatt tgtatcccca cttctcgaca cactcgtaaa
      481 tacaagaacc taagagcaaa accattcgca tcagtaatga tagatatttc acgcgcaggg
      541 ctggacttga aaggggtgtt gattaagggt caagtagagc tcgttgaagg cgatgaagca
      601 cgaaagatta accgtcagat tcatttgaag tatgtgacac cagaaggcct aagcgatcaa
      661 agtgttgcct cctatctgtc taaaggcgat gacgttactg tgaggattca catggacgat
      721 ctggtcaatt ggaatctagc acaatctaag gcaggaattg cccttagtga taaaggccgg
      781 tctcgaaaac tagatgtata aaaatgaata aatagaaaat aatagaaccc taatacatgc
      841 aaggttctaa tcctgacgaa tcctaagtgt tagaaaagtc ttgaggtatg caatagaatt
      901 aagacatcct tcatggttta atgatttgta ataattaaat tacttttttt acgttcatag
      961 attaagttgc aatgtgaaaa catggcttac ctacctattg tcataaatta atcttgaatg
     1021 ttaccgtacc atctgttaca tcgaatgtag ctccggttat ctccaaatct ttaaccatgt
     1081 accaaaacac cttttctaag aaaagagacc attttctccc aagtccatga tttattatgt
     1141 atgtcaaaga accttcgcta gattcacgat cgtattgcag atttgacaca ttcaaccatg
     1201 aatcaaagag gtcgaggatt actggtaaag aatattctct gctcatcatc aatagtgttt
     1261 c
//
LOCUS       DATLQL010000696         1927 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2300367, whole genome shotgun sequence.
ACCESSION   DATLQL010000696 DATLQL010000000
VERSION     DATLQL010000696.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1927)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1927)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1927
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2300367"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            322..909
                     /locus_tag="VNB68_06980"
     CDS             322..909
                     /locus_tag="VNB68_06980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37126.1"
                     /translation="MAIFQTGSNSSLAQTINSTQNLNQTGLNGNLLYIVIFGNKTIGN
                     IDNQTNFVSSVVGNSLDRIREEFVKSISMIPSEQLKKEINQVVDAGISGAGCKNIVHT
                     VHSKVDCIKSGDKVFWFVSEVVTPKTQDANKTSGIGVSIANGTLGYKTVYEHTTSPKT
                     FTPEEQAAIDMRCNVLGNNYSSLSIADRGWLLANC"
     gene            1577..>1927
                     /locus_tag="VNB68_06985"
     CDS             1577..>1927
                     /locus_tag="VNB68_06985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HVD37127.1"
                     /translation="MISNWIARVGSVIPRGFSRHYVLALLKEQPMTGKEIIDKAILQS
                     DGKWKPSPGLIYPMLGRLLEEGLISETDSGKYRITSKGLEIVDVDSVRSIMQKQLDVM
                     LRVGNVGKFMTMDLI"
BASE COUNT          656 a          331 c          407 g          533 t
ORIGIN      
        1 cggctgagta ttaggcatca tctggaggcc agatttcagc ggtactcttc ggctagcggg
       61 gcttcccttg aaactacgtt tgtgattagt actgaaagga catatccaat gcaaggttca
      121 atgagataca atagatagga ttgacgatta tttaattagg cagatcgatt agtatttgaa
      181 gagcatttac aaagatacat ggaagaattt tgtatggact ggatgaaatg tagggatttg
      241 atcgaaaata atattaatta atcttcttac tgtacgaata agttgaacag gctcattggt
      301 tttattttca ttgcagggtt tatggccata tttcaaacag gctcaaatag ttcgttggca
      361 caaaccatca actcaactca aaatttgaat caaaccggtc taaatggcaa cttgctgtac
      421 atagtaattt ttgggaataa aacgatagga aatatagaca accagacaaa tttcgtatcc
      481 tctgtagttg ggaatagcct ggataggata agggaagaat ttgtaaagag cattagtatg
      541 attccctctg aacaactaaa gaaggaaata aaccaagtag tcgacgcagg gatatctgga
      601 gctggctgca aaaacattgt ccatactgtc catagtaaag tagattgtat caagtcagga
      661 gacaaggtat tttggtttgt ttcggaggtg gttacgccta aaactcaaga tgcgaacaag
      721 acgtctggca ttggagtatc catagctaac ggaacattgg ggtacaagac agtatacgaa
      781 catactacga gtccaaaaac gtttactcct gaggaacagg cagcaataga tatgcgttgc
      841 aacgtactcg gaaataatta ctcgtcttta tcaattgctg atcgtggatg gctcctcgct
      901 aactgctgat ccaatgttta ccatgggcca agcgcaaaaa cgtgagcggt cggacaagag
      961 agaaatcgga aagcacaaaa gctagtacta ctcaagtcca tgcatatcct ttttccagtt
     1021 tgagttaaat tcaaaacaga aaaggtgtgt ttctgccttt actaccattc aggatgcagt
     1081 acatagcccc tctatgttat ttaattaaac caggtaagta ttgtcggaaa taaaataaaa
     1141 tgaacagttg tttattgata aattcctaag cttgtcaatg ggagtattta cgatttgcag
     1201 ataaaggaaa ttctcaccat tccatttttt ccactgctcc cactctgtca aattcgaaca
     1261 gtaaaaatat taaagattgc cttccaataa ctaacttgat cttggcttgg tgaaaactgg
     1321 cagctccgaa aatgacgaaa agaagaaacg gacaacaaag aaaggtattt tggtaacaat
     1381 catcatagtc gcagctattg tagctacaag ctttcttgtg tacttgatcc cttgatagac
     1441 gggcacggga aatttaacat catttaatag aacatgttct cagctaaata aaaaactatg
     1501 ccaaaatcag ttgtccgtca cagcaatacc tatgcagcca taagactaaa atatcactag
     1561 taatatcact agtgatatga tctcgaattg gattgcaagg gttggaagtg taatacccag
     1621 aggattttct cgtcactacg ttttagcatt actaaaagag caacctatga cgggcaagga
     1681 aataatagat aaagccattt tgcaaagtga cggaaagtgg aaaccatctc caggcttaat
     1741 ttatccaatg ttaggtaggt tactggaaga aggactaata agtgaaacag acagtgggaa
     1801 atatcgtatc acgtcaaagg gattggaaat agtagatgtt gattcagtac gcagcataat
     1861 gcaaaaacaa ctagatgtaa tgcttagggt agggaatgtt ggtaaattta tgacaatgga
     1921 tctaatc
//
LOCUS       DATLQL010000697         1159 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_879482, whole genome shotgun sequence.
ACCESSION   DATLQL010000697 DATLQL010000000
VERSION     DATLQL010000697.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1159)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1159)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1159
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_879482"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..239
                     /locus_tag="VNB68_06990"
     CDS             <1..239
                     /locus_tag="VNB68_06990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37128.1"
                     /translation="QVDQYIGEKTILEAKKCRNTGIEIDTIMISEEDSLLSYVNELER
                     LVKGRSYYINPADIDKILLTDYLNNKKIILSSHT"
     gene            285..1094
                     /locus_tag="VNB68_06995"
     CDS             285..1094
                     /locus_tag="VNB68_06995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HVD37129.1"
                     /translation="MMANTDMIYLDWNNSFNILRKAHKASLFVLIIGPKGTGKTSLVR
                     KFTSDLHKELHSVNFSLRTRESHLVGSKTMNQGEISFVEGILIKSMKNGGILYLDELN
                     AAEADVLLRLDEALDDRRQIILKEAEGQVIKASQDWFVIATINPLSHAGTKELPPQIL
                     SRFPVRIRLDYPPKDIEMQIVKNHVSVTTLEERELERAFKLANGLREAASLEELYYSP
                     SLRESIAFAKLIREGVTAKEAAEVIYANVYEQWGEVEYRKVMDMITSIFAS"
BASE COUNT          389 a          202 c          241 g          327 t
ORIGIN      
        1 gacaagttga tcagtatatt ggagaaaaaa cgattctaga ggcgaagaag tgtcgtaata
       61 caggcattga aattgatacc atcatgatca gcgaagaaga ttctctgctg agctatgtta
      121 acgaattaga gagattagtc aaaggccgct cttactacat taaccctgca gacattgaca
      181 aaatactgct cactgactac ttaaataaca agaaaatcat cctatcctca catacatagt
      241 ttataccatt agtttttatt tacaatacga ggaactgact tacgatgatg gccaatacag
      301 atatgattta cttggattgg aataactcat ttaacatatt aaggaaggct cacaaagctt
      361 ccttatttgt acttataatt ggtcctaaag gaacaggaaa gactagtctt gttaggaaat
      421 tcacatcgga tctccacaaa gagcttcatt ctgttaactt cagtcttcga acaagggaat
      481 ctcatttagt tggctctaaa acaatgaatc aaggagagat cagttttgta gaagggatat
      541 tgatcaaatc aatgaaaaat ggtggaattc tttatttgga tgaattaaac gctgctgaag
      601 ctgatgtcct cttacgcctt gatgaggcac tcgatgacag acgtcaaatc attttgaaag
      661 aggcagaggg acaagtaata aaggcctccc aagattggtt tgttatagca acgataaatc
      721 cattgtccca cgcaggcacc aaagaacttc caccccagat attgagccgg tttcctgtaa
      781 gaattagact ggactatccc ccgaaagata tcgaaatgca aattgtaaaa aatcatgtta
      841 gtgttactac tcttgaagaa agagagctag aacgagcgtt caagttggca aacggtttaa
      901 gagaagctgc ttctcttgaa gagctttact atagtcccag ccttagggaa tcaattgcgt
      961 ttgcaaagct cataagagaa ggtgttacag caaaggaagc tgcagaggtg atatatgcca
     1021 atgtttatga gcagtggggt gaggtggaat ataggaaagt catggacatg ataacctcta
     1081 tattcgcttc ctaaattgtc agttgattat aaacaacgtt ttgtgatgcg caatgatgtt
     1141 cttattaata taggtactt
//
LOCUS       DATLQL010000698         1900 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2651537, whole genome shotgun sequence.
ACCESSION   DATLQL010000698 DATLQL010000000
VERSION     DATLQL010000698.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1900)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1900)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1900
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2651537"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            146..283
                     /locus_tag="VNB68_07000"
     CDS             146..283
                     /locus_tag="VNB68_07000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37130.1"
                     /translation="MNKKDKVAVVTGSSRGIGFENLAYLSKERLPNICNNEESSEGKK
                     H"
     gene            410..1000
                     /locus_tag="VNB68_07005"
     CDS             410..1000
                     /locus_tag="VNB68_07005"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HVD37131.1"
                     /translation="MTPVNNAGYGQVGAFEELSIDEIKQQFETNFFGVIRVTQAVLPV
                     MRKRGDGIIVNISSGAGKFGYPNGSAYVNSKFALEGLSKSMAYEIEPYGLRVVLVEPR
                     FVRTNFSNLVAKRSQSPNSLYSKMTEKMAASVEKMKINSSPPELVADAVLKAVTSKEP
                     KPNLRYLVGKYVEHWMEQKKNMSDKEFLNVIKQSLQ"
     gene            complement(1275..>1900)
                     /locus_tag="VNB68_07010"
     CDS             complement(1275..>1900)
                     /locus_tag="VNB68_07010"
                     /inference="COORDINATES: protein motif:HMM:NF013899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="urease accessory protein UreD"
                     /protein_id="HVD37132.1"
                     /translation="AHVTTQGATRIYKMEKNYGTQIVNIKVGEGSYLEYIPDQIIPFC
                     NSRFYQEVELSVHDSATLIYSETIVPGRVASGEKFEYDICYIKTIARSHLGNHRFIDI
                     IKLEPKKEDLTSDGILGNFDVVGTIYIVTRELHVKDLQYEVSEKIKEFEVEGRMSCGT
                     SILPARQGIIVRVLGKTAGDVKNLIFEVVRIARNQIIGASFSGIRKA"
BASE COUNT          586 a          363 c          352 g          599 t
ORIGIN      
        1 tactttgaca atatgcgata gtactttttt ttgttccctc gctcaaatta gtttactagt
       61 tttactaaat tagttttctg agctcacagc catagaggcg acgcatttaa tatttgttaa
      121 ataagatgaa atcccatttc atataatgaa taaaaaggac aaagttgcag tcgtaacagg
      181 aagttcaaga ggcatagggt ttgaaaacct cgcttacctt agcaaggaac ggcttcctaa
      241 catatgcaac aatgaggaat cttcagaagg aaaaaaacat tagtctaatt tcagataaag
      301 aaaggatacc attaaaaacc ttgcaacttg atgtgactga ttcgacctcg gttaataatg
      361 cgataaaggt ctataatgga tgaaaccgga agagaagatg tattagttaa taacgccggt
      421 taataacgcc ggatatggac aggttggtgc ctttgaggaa ctgagtatag atgaaatcaa
      481 acaacaattt gaaacgaatt tttttggggt tataagagta actcaggctg ttctcccagt
      541 aatgagaaaa cgaggagatg gaataatcgt aaatattagt tcaggcgccg gaaaattcgg
      601 ttaccctaat ggttcagcgt acgttaattc caaatttgca ctagaagggc ttagcaaatc
      661 tatggcatat gaaatcgaac catatggtct tagggttgta ctggtggaac ctagatttgt
      721 aagaacaaac ttttcaaatt tagtggcaaa aagatcacaa agtcctaatt cgctatattc
      781 aaagatgaca gaaaaaatgg cagccagtgt tgaaaaaatg aagataaata gttctcctcc
      841 agaacttgtt gcagatgcag tcctaaaggc agtaacaagt aaggagccta aacctaacct
      901 taggtatctg gttggaaaat acgtagaaca ctggatggaa cagaaaaaga atatgtccga
      961 taaagaattt cttaatgtaa taaagcaatc cttacaataa aaacaatcgc tacagtgaga
     1021 tgaatttaat tggtgtctga aatttcacat gtccccttgt gttgccttaa agcattgcct
     1081 cccttggaag ctgattttgt caatttcacc gttgggacat gttcaattgg tatgttactt
     1141 aatttgagat ctgaaccata gaccttggga tacttctttc aatcttgcac ttgcaatcag
     1201 gaccttcttc cagcttcaac taagttttgc tcgaagtttt aatttaccgt cggtatgaac
     1261 gtgtctttta ctgattatgc ctttcttatc ccgctgaatg atgcccctat aatttgattc
     1321 ctagctatcc ttactacttc gaatatgaga ttcttcacat ctccagccgt tttacctagt
     1381 accctgacta ttattccctg tctggctgga agaattgacg tgccacaaga catccttcct
     1441 tcaacctcaa attctttgat cttttcacta acctcatatt gcaagtcttt cacatgtaat
     1501 tccctagtaa cgatatatat tgtgccaact acatcaaagt ttcccaatat tccatcagac
     1561 gtcaagtctt ctttctttgg ttctaacttt attatgtcta tgaatctgtg attgccaaga
     1621 tggctccttg cgatagtctt tatgtaacag atgtcatatt cgaatttttc accacttgcg
     1681 accctgccgg gaacgattgt ttctgaatag atcagtgtgg cactgtcatg gacactcaat
     1741 tctacttcct ggtagaatct agaattacaa aatggtatta tctgatctgg gatatactca
     1801 agatagcttc cttcccctac cttgatattg actatttgag tcccataatt tttttccatc
     1861 ttgtagattc tggtagctcc ttgcgtggta acatgagcaa
//
LOCUS       DATLQL010000699         1226 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_344856, whole genome shotgun sequence.
ACCESSION   DATLQL010000699 DATLQL010000000
VERSION     DATLQL010000699.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1226)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1226)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1226
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_344856"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            599..>1226
                     /locus_tag="VNB68_07015"
     CDS             599..>1226
                     /locus_tag="VNB68_07015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37133.1"
                     /translation="MASRKDDKKDDKRDDKREQGTNTANNNNNPQQQATDAASASINR
                     AIDETRDSIKRTTEETRRELPRYRDSMIDFQRETVDTTREMADSFLESQRDIANSFQS
                     AWTPAIHSMMNFWFPYTNLPAAMAEAYTRTISTMAESVVTGTRMANNMMVASMESMRT
                     TIDIARDNVKDVTGLASNNARAAEEITKGITRLSSGSSFAAGSSSGTGS"
BASE COUNT          457 a          219 c          256 g          294 t
ORIGIN      
        1 tatttggagc aactactttt ctaattagtg caggagtcat attcacagtt tttatcatgt
       61 catttcgact aatgaaaatg aaaattaaat aagaagtggg tatgcaatga aatgagctca
      121 cctacgcaag gcgagagata gcagattaga tcgcgtaggc tgttagcaag taatatagct
      181 aaaactttaa agctagtttc tatctcatca tgtgcagaac tcttctaaaa gaactaataa
      241 tggagcgggc cgctcgggat ttggataaaa atttatttga atccaaaatc agaattccat
      301 tcttctatat cgtagaagaa ttccctcaga tgagacaaca atttcacagt taatccagta
      361 ataaagtggg cccgggggga tccgagagga aaaccttcaa aattaagaca cagtccaact
      421 aaaagatgga ttcggtaggg tttggtatcg tcatagtggt aggttcatag gctatcctaa
      481 ttactaaacc caaaaaataa tcgaatatat cagaagagaa agagagcttt ctcttctaaa
      541 gagtctggca tgaatcattt agttgaaacc cttatcatat gtaaaaacat tgataattat
      601 ggcatcaaga aaagacgata aaaaagacga taagagagat gacaaaagag agcaaggcac
      661 taatacagcc aacaacaaca acaatcctca gcaacaagca acagatgcag cctcagcttc
      721 aattaacagg gcaattgatg agacaagaga cagcataaag cgtacaactg aagagacaag
      781 aagggaactg ccccgatata gagactcaat gatagacttt caaagggaaa cagttgatac
      841 tacaagggaa atggcagaca gctttcttga atctcaaaga gatattgcta attcatttca
      901 gtcagcatgg actcccgcaa tacacagtat gatgaacttt tggtttccat acacaaactt
      961 gccagcagca atggccgaag catatactag gacaatttca accatggcag aaagtgttgt
     1021 gactggaact agaatggcaa ataatatgat ggtagcaagc atggaatcca tgagaactac
     1081 gatagatatt gcaagagata acgtaaagga tgtgacagga ttagcatcaa acaatgcaag
     1141 agctgcagaa gagatcacca aaggtataac aagactttcc tctggttcat cgtttgcagc
     1201 gggatcatcg tcaggaacag gttcaa
//
LOCUS       DATLQL010000700         2645 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_700685, whole genome shotgun sequence.
ACCESSION   DATLQL010000700 DATLQL010000000
VERSION     DATLQL010000700.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2645)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2645)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2645
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_700685"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(115..501)
                     /locus_tag="VNB68_07020"
     CDS             complement(115..501)
                     /locus_tag="VNB68_07020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide-binding protein"
                     /protein_id="HVD37134.1"
                     /translation="MKDESIQTQNKFIVAAIKGKILVNKCRNCGQLMLETVYYCPVCS
                     KSDFELVEFDGVGTVVTHTIQAVAPEGFEDLGSYAWVVFSVDNTPIRASGFLPGIKVP
                     ADLPIGSKVKVTGYDKKHGLSLQKLP"
     gene            complement(521..1678)
                     /locus_tag="VNB68_07025"
     CDS             complement(521..1678)
                     /locus_tag="VNB68_07025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiolase domain-containing protein"
                     /protein_id="HVD37135.1"
                     /translation="MTNSVCVLGAGSTRYGKLNESIIEIALNAAKGAIDSAGITPKEI
                     QAGYISNVFGVADKQVHMAPVLMSNLGIPNVPGLTIESACGSGSVMFREAYANVAAGF
                     YDCLLALGVEKVTHTGTTQSTTLFSYCSDFFYEGGNGASFPGLFASIARAYLTTHKAT
                     EEDLAYVAVKNHDNGLLNPKAHIRKKITVEDVMNSPMVASPLKVFDCCPFSDGASAVI
                     LCTEEFAKRSGKPYMRVIGSGRGASPAAVQGREDITTIPSTVAAAKQAYKMAGLRPED
                     IDFAEVHDCFTIAEVIDVEDLGFFKKGTGAQAAREGATRRDGRIPINPSGGLKSKGHP
                     IGATGIGQVVEVFEQFTGAAGDRTVKDAEIALTHNFGATGASAAVHIFQKV"
BASE COUNT          753 a          580 c          475 g          837 t
ORIGIN      
        1 tatttgtttg tatgaacgta gggcgtcaac aaagaaatat tatgattaat agtaatattg
       61 cagctgtgac gtttgaaaac tagacaacct ttcggttgtt tttttctgtt agtctcacgg
      121 tagcttctga agcgagagac cgtgcttctt atcataaccg gtgactttga ccttagaacc
      181 aatcggtaaa tcagctggca ctttaatccc aggcaaaaac cctgatgccc ttattggcgt
      241 gttgtccaca ctgaagacaa cccatgcata agaaccaaga tcctcgaaac cttcaggagc
      301 tactgcctgg attgtatgag tgacgacggt tcctactcca tcgaattcta ctaattcaaa
      361 atcacttttt gaacaaacag gacaatagta cacagtctcc aacatgagtt gaccgcaatt
      421 tctgcatttg ttaactaata tttttccttt tattgcagca actatgaatt tattctgagt
      481 ctgaatcgat tcatctttca taatctaaca agtctccagc ctatactttt tgaaaaatgt
      541 gaaccgccgc gcttgcaccg gtcgccccaa aattatgcgt caatgcgatt tctgcgtcct
      601 ttacagttcg gtcgcctgca gctcccgtaa actgttcgaa tacttctacc acttgtccta
      661 ttccggttgc acctattggg tgtccttttg attttagtcc gccagacgga tttattggga
      721 tccgaccatc cctccgtgtt gctccctccc ttgcagcttg tgcccctgtt cctttcttga
      781 agaaacctaa atcctcgaca tcaattacct ctgcaattgt gaagcaatca tgaacctcag
      841 caaagtcaat atcttcgggt ctcaagcctg ccattttgta cgcctgtttt gcagctgcaa
      901 cggtactagg aatagtcgta atatcttctc taccttggac tgcagcaggt gaggcacccc
      961 tccctgaacc tattaccctc atatacggtt tacccgacct cttagcaaat tcctcggtac
     1021 ataaaatcac cgcagacgct ccatctgaga aagggcagca atcaaaaact tttaacggtg
     1081 aggccaccat aggagaattc atgacgtcct cgactgtgat cttttttctg atgtgtgcct
     1141 ttggattgag aagtccgtta tcatggtttt ttactgcaac atatgccaaa tcttcttcag
     1201 tcgctttatg cgtggtcaga tatgcacgag ctatggatgc aaaaagtccg ggaaaggatg
     1261 cgccattgcc accttcgtaa aagaagtctg aacaatatga gaacagagtt gtactctgag
     1321 ttgtacctgt atgagttact ttttcaacac ccagggcaag aagacagtca taaaaaccgg
     1381 cagcaacatt ggcatatgct tccctgaaca ttacagaacc cgacccacat gctgattcga
     1441 tggtcagtcc tggaacattt ggaattccca aattactcat tagaacaggt gccatatgta
     1501 cttgtttatc agcaactcca aaaacattcg aaatatatcc ggcttgaatt tcttttggcg
     1561 taatgcctgc agagtcgatc gctcccttgg cagcatttaa cgctatttct attatgcttt
     1621 cgttaagctt gccatatctt gtacttcctg ccccaagaac gcagacacta ttcgtcattc
     1681 gttaaaaaat agtgtagagc atataaaaat gttagacagt tgcgacacga tttgtagtat
     1741 tgggtaggga atttatcgaa tgatagatac tataaacttc aatattgact ttctcttctc
     1801 catgacgaac tttgcccaat gctttacaat cgatcctaat aaacgtgata taatcggttg
     1861 cactattatg ttttggttct tttgtcgaca gatatcttaa ttgatacaaa caatgccagc
     1921 ttctcaccgg tcgacccgtg gcatattgtg tatttgtatc tataagtcta ttatgcttta
     1981 tgtttaagca tagattgaat gacgctacta tgcctatttc tattaacacc tttgttaaca
     2041 agcagggcca aatagacgct agaaagcatt aattccaaat tcaacaagcc gagtaaatag
     2101 aaagcgacaa aaatatagac ttaaattgag atgttacatc ttctatttat tagagtatca
     2161 atatttgata gaaatgtttt ctattcctgc tatctaattt attaattcga accttgaaag
     2221 tattataaga taatttttag ccctctggca gcagatacag ttattcgcgg ctggcaaatt
     2281 gaaggcgaca tataaatttg aacatttatc tgtaataaat tagaaagaaa taccaatgct
     2341 gagatctgtg ataaccttac ctatctgtaa gctgtttttc ctaaccgata actgaactaa
     2401 agtacaagtc ccgcctttat cgccagaata ttatttttcc atttaatatt aataatagta
     2461 tcacttacgt tagacacttt gcgactccct ttggtcttta gattctctcc tttctttgca
     2521 gtcgatgttt tattgtgtaa tactcaaaag ttacctcaga aataattcac agtgaggctt
     2581 ttggaataat aagcagtaag gatggagaga tcgcacttgt atttccattt cctttagact
     2641 cagaa
//
LOCUS       DATLQL010000701         1166 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1590532, whole genome shotgun sequence.
ACCESSION   DATLQL010000701 DATLQL010000000
VERSION     DATLQL010000701.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1166)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1166)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1166
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1590532"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            45..>1166
                     /locus_tag="VNB68_07030"
     CDS             45..>1166
                     /locus_tag="VNB68_07030"
                     /inference="COORDINATES: protein motif:HMM:NF016906.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="right-handed parallel beta-helix
                     repeat-containing protein"
                     /protein_id="HVD37136.1"
                     /translation="MISTQQLQFTDATTGCVGYESGVNTITITCNASFQDVVQAINDP
                     ALLEQEEDGQYILKANLQVADGVTFEMNSNGVDNLQYLKIAGENGIIVYGKILMDGVK
                     ITSWDVSGDDVVQQDDNGTIRRGYVQFAASEGSQIMNSEFGYLGEVEPGRRGFDLFGG
                     GGPSHDMEIRGSKFHDMWMAFFSNGAYNITVDGNEYYNNIKYSLDPHTTTHDMNITNN
                     WLHDNLIGAICSDDCYDILIEGNRAEHNSNAGIFLSRNMTHSIVRNNYVSNSSSGILI
                     SESPNNQIYNNTIEGATEEGILLFNPSVIDDAPTEGNVIYNNIISDSDIGVRATRSQN
                     NIVQNTTFSNIESSEYHISANSNIMIRGQQFDNALISGGG"
BASE COUNT          383 a          202 c          245 g          336 t
ORIGIN      
        1 agggtttcgc tagtgtaact gctctattcc tattttctgt gaccttgata tcaacccagc
       61 aactccaatt tactgatgca actactggct gtgtaggcta tgagtcagga gtaaacacca
      121 ttaccataac ctgcaacgcc tcctttcagg atgttgttca agctataaat gatcccgcgt
      181 tacttgagca agaagaagat ggtcaataca ttctaaaagc taacctccaa gttgcagacg
      241 gtgtcacatt tgaaatgaat tcaaatggtg ttgataatct gcaatacctg aagattgctg
      301 gcgaaaatgg aattatagtt tatggaaaaa tactcatgga tggtgtaaaa ataacttctt
      361 gggatgtttc tggcgacgac gttgttcaac aagatgacaa cggcactatt cgccgtggct
      421 atgtgcaatt tgctgcgagt gaaggctctc aaattatgaa ttcggaattt ggatacctag
      481 gtgaggttga accgggaaga agaggctttg acctttttgg aggtggagga ccatcccatg
      541 acatggagat aagaggtagc aagtttcacg atatgtggat ggcatttttc tctaatggag
      601 catacaatat tacggttgat ggtaatgaat attacaacaa tatcaagtac tctttagatc
      661 ctcatactac gactcatgac atgaatatta caaataattg gcttcatgac aatctaatag
      721 gggcaatatg ttcagatgat tgctatgata ttctcatcga gggaaatagg gcagagcaca
      781 attcaaacgc tggcatcttc ttgtcaagaa atatgacaca ctcaattgta aggaataatt
      841 atgtctctaa ttcaagtagt ggtatactga tatcagaatc accaaataat cagatctaca
      901 acaatacaat tgaaggagca accgaggaag gaatactttt gtttaatcct agtgttatag
      961 acgatgctcc gacggaggga aatgttatct ataataatat catatctgat tctgacattg
     1021 gggttagagc aacaagaagc caaaataata ttgtgcaaaa tactacgttc tctaatatag
     1081 aatcaagcga ataccatata tctgcaaatt caaatattat gataagagga caacaatttg
     1141 ataatgcttt gatctcaggg ggaggc
//
LOCUS       DATLQL010000702         2286 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_527291, whole genome shotgun sequence.
ACCESSION   DATLQL010000702 DATLQL010000000
VERSION     DATLQL010000702.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2286)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2286)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2286
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_527291"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            235..1134
                     /locus_tag="VNB68_07035"
     CDS             235..1134
                     /locus_tag="VNB68_07035"
                     /inference="COORDINATES: protein motif:HMM:TIGR03026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003979 - UDP-glucose 6-dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide sugar dehydrogenase"
                     /protein_id="HVD37137.1"
                     /translation="MGTSKISIIGSGIVGTATGRGFHKLGHDVIFYDIASEKIRPLKN
                     LGYNVASTLEEAMSQTGISFICVNTPTNNGQQDLSQIMSVLYQLSNFLNNSDGFHLLV
                     FRSTMLPGTMSNFVVNYLERHCTKKRGIHYEVCYNPEFLRQNSALDDFFSPDRVILGE
                     DRKGISESLISMYKELTDKIIVTSFEAAELIKYASNCFLSLKISFFNEIGMICRSVGV
                     DDKIVSLGVSLDKRIGKYGTEAGRPFDGMCLPKDTQALASFMKQHDIEPDLLQVVLDI
                     NKKIEDITATRQIVSGIRESVQV"
     gene            1289..>2286
                     /locus_tag="VNB68_07040"
     CDS             1289..>2286
                     /locus_tag="VNB68_07040"
                     /inference="COORDINATES: protein motif:HMM:NF012377.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cellulase family glycosylhydrolase"
                     /protein_id="HVD37138.1"
                     /translation="MTVLFSITHFQAQAAPYKPHLIGVDMLGYYTSMPQTREFKDPLP
                     ENYFDDSFKLISQAGLNHIRFVYYWESYVKDPLAVINELKFVASTADKYGLKVIYDNH
                     QFHTSSWLNPQRGTGFPSFFFQNNTQYAFGSGGGPKYPTASTWWGNWWNRQITDLNGT
                     DGWTLLDQFLKKVVDTVDSHASTVGYEILSEPQVHSSDQWEKIGVFNSFITDQLRTVT
                     AKDIVFSMTIPVDLKSPIGVNATNLAKMTPSDKTNVVFKFSLYGLPKPGSYQEQRLKM
                     FVNTGQIAGVPIYVGEWNNVDRDLTVNEEGDVVFEINPQTSNITPADTSLILNKFN"
BASE COUNT          726 a          411 c          471 g          678 t
ORIGIN      
        1 aggttggtgc ttaagtatgc ctgtagtatt tattaaattt gttcgccttt ttattatagt
       61 gatcccggta tttttattta atagtaactg ttcctatgct ctataaatca gtgagctaac
      121 atatttcttg ctaaattcaa caaaagcata tcaaggtaga agagacagga ttgtatatat
      181 atgattcctt acaaacggat acaattataa tgacattaaa agggatagga gggtgtggga
      241 acgagtaaaa tcagtataat tggctccggg attgttggaa ctgcaacagg tcgaggcttt
      301 cataagttag gacatgacgt aatcttttat gatattgcaa gtgaaaagat cagacctctc
      361 aaaaacctag gatacaatgt cgcatctact ctagaagaag ctatgtctca aactggaatc
      421 tcctttattt gtgtaaatac tcccactaat aatggacagc aagatctgtc gcaaatcatg
      481 tctgtgcttt atcaactttc aaatttcctc aacaatagcg atggatttca tcttctggta
      541 ttcagaagta caatgttgcc aggaactatg agcaattttg tagtaaatta tctagaaaga
      601 cattgtacta agaagagagg tattcactat gaagtatgct ataatccaga atttttaaga
      661 caaaattcgg cattggatga ttttttctcc ccagacagag tcatattggg cgaggatcgc
      721 aaaggaatat cagaatcact aatatcaatg tataaggaat taaccgacaa gattattgtt
      781 acatctttcg aagcggccga gctgataaag tatgcctcaa attgtttcct ctcactaaag
      841 atttcatttt tcaatgaaat tggcatgatt tgcagaagtg tgggggtcga cgacaagata
      901 gtcagtttgg gagtttctct agataagagg ataggaaagt acggaactga agctgggaga
      961 ccgtttgatg gaatgtgctt accaaaggat actcaagctc tggcgtcgtt tatgaaacaa
     1021 cacgatatag aacctgattt actccaggtc gtgctcgaca ttaacaagaa gattgaagat
     1081 ataactgcca cgagacaaat tgtatcagga attagggagt cggtacaagt ttagttgtcg
     1141 acacatatca tttaattata acattttctt tgtataatat tccacaagct gggccaagcg
     1201 acatttagta aatttatatt tggtagaaga ccgttccgcc ttgatggttt tgtcgcgtat
     1261 tacattttct ctgtcaatct tcttgatttt gacagtttta ttctccataa ctcattttca
     1321 ggcacaggcc gctccctata aaccacattt gataggtgta gacatgcttg gatattatac
     1381 gagtatgccg cagaccaggg aatttaaaga tccgttgcca gagaattatt ttgatgatag
     1441 tttcaaatta attagccaag cgggactgaa ccacatacgg tttgtgtact actgggagtc
     1501 gtatgtgaaa gatccgcttg cagtcattaa cgaactaaag ttcgtggcgt ctacggcaga
     1561 taaatacggt ctcaaagtta tttatgataa ccatcaattt cacacatcat cgtggcttaa
     1621 ccctcaaaga ggaactggtt ttccatcttt cttttttcag aataatactc agtatgcatt
     1681 tggtagtgga ggaggtccca aataccctac agcctctaca tggtggggga actggtggaa
     1741 tagacagata acagatttga atggtaccga cggatggacg ctgttagacc aatttctaaa
     1801 gaaagttgta gataccgtag actctcacgc cagcactgta ggctatgaga tattaagtga
     1861 acctcaagta catagctctg accaatggga aaaaataggc gtattcaatt cattcataac
     1921 agatcagctc aggaccgtaa ctgcaaagga cattgtcttc agcatgacta ttccagttga
     1981 tctaaagagc cccattgggg taaacgctac aaaccttgca aaaatgaccc caagtgacaa
     2041 gacaaacgtt gttttcaagt tcagcttgta tggcttaccc aaacctggaa gctatcaaga
     2101 acaacgactt aagatgtttg taaacactgg acaaatagca ggcgtaccta tctacgttgg
     2161 agaatggaat aatgttgaca gagaccttac tgttaatgag gagggagatg tggtttttga
     2221 gataaatcct caaactagta atattacacc tgcggataca tctctcattc tcaacaagtt
     2281 taacga
//
LOCUS       DATLQL010000703         1240 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_167039, whole genome shotgun sequence.
ACCESSION   DATLQL010000703 DATLQL010000000
VERSION     DATLQL010000703.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1240)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1240)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1240
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_167039"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1079)
                     /locus_tag="VNB68_07045"
     CDS             complement(<1..1079)
                     /locus_tag="VNB68_07045"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HVD37139.1"
                     /translation="MKILMVSTEYPPMQGGVGRYCKKLVDSLRNQDVEVRVVCNEDGQ
                     GDYSGISPLNPANSDILMKIVEEYQPDLVHVQYEPGLYGIHLDPLNPNKTCTNIEAFY
                     RECKVPIVTTFHSAYTFRQWMSLVVPLVNKKFGKIGTWLRVAYDYWTHFLNYRSFNSL
                     NTQKIGPNRKGIVFSRYLANLIPGSHLIYHGSEPSLIPAPDKREARRKFSLPEEGNIA
                     LALGFLTATKGLEIIRKMKVPAGWKIVVNTSRNHYNMEKIQEKFDNEGVIELGKGFLT
                     DKELSLLLYSADALILPYTVSSGSGVMYDGLAHGLPFVSSNIEFFKEFSKLGLGISVE
                     RDPLEFSKAFVKLEQDYKKYENAVE"
BASE COUNT          346 a          259 c          234 g          401 t
ORIGIN      
        1 atttccactg cattttcata ttttttataa tcttgttcaa gtttcacaaa tgctttggaa
       61 aattcgagtg ggtcacgttc aactgaaatc cctagcccta atttggaaaa ttccttgaag
      121 aattctatat tgcttgacac gaatggaagt ccgtgggcga ggccatcata catgacgccc
      181 gaaccagaac ttactgtata cgggagaatt agagcatcgg cagaatagag aagcagtgaa
      241 agctctttat ctgtcagaaa tcccttgcca agttcaatta caccctcatt atcgaacttt
      301 tcttgtattt tttccatgtt gtaatggttt ctcgaggtat tgacgacgat cttccagcct
      361 gcaggaactt tcatttttct aataatttcc aagcccttcg tggcagtcag aaagcccaga
      421 gcgagggcga tattgccttc ctcgggtaat gaaaatttcc gtcttgcttc cctcttgtca
      481 ggagctggta ttaggcttgg ctctgatcca tgataaatca aatgagatcc tggtatcaaa
      541 ttagccaagt atcttgaaaa aacaatccct tttctatttg gacctatctt ttgtgtattg
      601 agggaattga atgagcgata attcaaaaaa tgagtccaat agtcgtaggc cacacggagc
      661 caagttccta tttttccaaa ctttttatta actaaaggaa cgacaaggct catccactgt
      721 ctaaaggtgt aagctgaatg gaaagtagtc acaataggta ctttgcactc ccggtagaag
      781 gcctctatat ttgtgcatgt tttattagga ttcaatggat ccaaatgtat tccatacaat
      841 ccaggttcgt actgaacatg aactaggtct ggctgatatt cttcgactat tttcatgagt
      901 atgtctgaat tagcaggatt gagaggtgag atgccagagt aatctccttg tccatcttcg
      961 ttacatacga cacgaacttc gacatcttga tttctcaagg agtcgactaa ttttttgcag
     1021 tagcgaccca caccaccttg cataggtgga tattccgttg acaccattaa gattttcata
     1081 tttttagaca caccagctta acaaatcaaa taaaccaagt acttattgca caacaaccta
     1141 tatcttcctt gtgttcaggg tcatttgatt attcagtcgt atacgttaga gccgttctca
     1201 attctttttt tcatttgatt ctctttagca tggaccttcg
//
LOCUS       DATLQL010000704         1802 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2302212, whole genome shotgun sequence.
ACCESSION   DATLQL010000704 DATLQL010000000
VERSION     DATLQL010000704.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1802)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1802)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1802
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2302212"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..460)
                     /locus_tag="VNB68_07050"
     CDS             complement(<1..460)
                     /locus_tag="VNB68_07050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HVD37140.1"
                     /translation="MVFTSVFVADMDYDLIRQIKDGSLKIAIYGLGHVGSPLAAAWLR
                     AGAHVIGVDNSRKVLRAAMEGRTLIPEPGISEAYAEALKNNRFELFEDPIEASKKSYF
                     KMICVPVLSEEMSADLRAVNEVATSIGKGLKKGDVISLNPSVPPGTTEDVI"
     gene            complement(599..985)
                     /locus_tag="VNB68_07055"
     CDS             complement(599..985)
                     /locus_tag="VNB68_07055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37141.1"
                     /translation="MSSHDPNPLPYGALPYYQVHFIVDSVKVVDPAIFMAKCEPLTRG
                     HLRNKAVIDLQWSGGRLADLLKSDKTLSEMLMPLMLDEGEISIDPQDNRVRIYTSWKR
                     EDNLKFSLSFFKAIERIAATIRQLSK"
     gene            complement(1128..>1802)
                     /locus_tag="VNB68_07060"
     CDS             complement(1128..>1802)
                     /locus_tag="VNB68_07060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="His/Gly/Thr/Pro-type tRNA ligase C-terminal
                     domain-containing protein"
                     /protein_id="HVD37142.1"
                     /translation="YYLTLLVLFYEKTGIDMSRTRLRQLSTSEKAFYASFAFDFEVET
                     SVGWLELVACNYRSDYDLRGHSTVSKQNLHVIDPIDNIKVLPNVFELSMGIDRSIYSI
                     LEHSYCEDFEHERTVLRLRPYLAPILAGILPLITKDGLREKAQLIYSQLKLDFPVFYD
                     ESGSIGRRYRRLEEIGTPFAVTVDRQTLSDDTVTIRNRDTMLQVRIQICELSSYLRKE
                     AYKLVS"
BASE COUNT          513 a          383 c          327 g          579 t
ORIGIN      
        1 caatgacatc ttccgttgtg cctgggggca cgctggggtt caaggaaatt acgtctccct
       61 tctttagtcc cttccctatt gatgtagcta cttcatttac tgccctaaga tcagccgaca
      121 tctcttcaga cagaacggga acacagatca ttttgaaata cgactttttg gacgcctcta
      181 ttggatcttc aaataattca aaacgattgt ttttcaaggc ctctgcgtat gcctccgaaa
      241 ttccaggttc tggaatcaaa gtccgacctt ccattgctgc tcttaatacc tttcgagaat
      301 tgtcaacacc tattacatgg gcaccagccc tcagccaagc tgcggctagc ggagatccaa
      361 catgacctaa tccatatatt gcaatcttta aacttccatc cttgatctgc cggatcaggt
      421 cataatccat gtctgcgaca aagactgaag taaaaaccat aaagtacttc tgatgcgttc
      481 aattctgtat atatttgatt acgcccgatt tgaatactgt ataatcaact gactaacttg
      541 ctcgccatct cgatatgaaa ggaacattgg tatactgttt tcttaattat acctgctatt
      601 atttagataa ttgtctgatt gtggcagcaa ttctttctat agccttaaag aagctcaaac
      661 taaatttaag attgtcttct cttttccaac ttgtgtaaat tcttactctg ttatcctggg
      721 ggtcaatgct gatttcacct tcatctagca ttaagggcat caacatttca gataatgttt
      781 tgtccgattt tagtaggtcg gccaatctcc caccactcca ctgtaaatct attactgctt
      841 tgtttctaag atgacctctg gttagaggct cacacttagc catgaaaata gcaggatcta
      901 caactttgac agagtctact ataaaatgaa cctgatagta tggaagagca ccatatggaa
      961 gaggatttgg gtcatgtgaa gacatgggtc tactgaatca cttagaagca ttcgtatctc
     1021 cttgtatatc aatttatgtt ccactctgcc ggtttattat tctgctcaaa atcaaaaaaa
     1081 catctacatt ggacgtgaaa gtaaattgga gttgttgttc aaatctgtca tgacactaat
     1141 ttgtatgctt ctttacggag ataactagag agttcgcata tttgaattct tacttgcaac
     1201 attgtatctc tgtttctgat cgtcactgtg tcgtcagaaa gggtttgcct atcgaccgtt
     1261 actgcaaaag gtgtaccaat ctcttcaagc cttctatatc ttcttccgat tgaaccagac
     1321 tcatcgtaaa aaactgggaa atctaatttg agttgagaat agatcagttg agctttttct
     1381 cgcaatccat cttttgttat aagtggaaga attcctgcta atatgggtgc aagatatggt
     1441 cttaatctca gaaccgttct ttcatgttcg aagtcttcgc aatatgagtg ctctaagatt
     1501 gaataaatac ttctatctat ccccatagac aactcaaata cattaggaag gaccttgata
     1561 ttgtcaatgg gatcaatgac gtgcaaattc tgtttgctta ctgtggaatg tccacggaga
     1621 tcgtaatcgg aacggtaatt acatgccacc aattccaacc aaccaacgct cgtttcaact
     1681 tcaaaatcaa acgcaaaaga ggcataaaat gctttttcgc tggtcgaaag ttgtcttagg
     1741 cgtgtacgac tcatgtcgat tccagttttt tcatagaaca gaactaagag tgttaggtaa
     1801 ta
//
LOCUS       DATLQL010000705         1512 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_881482, whole genome shotgun sequence.
ACCESSION   DATLQL010000705 DATLQL010000000
VERSION     DATLQL010000705.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1512)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1512)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1512
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_881482"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..760
                     /locus_tag="VNB68_07065"
     CDS             <1..760
                     /locus_tag="VNB68_07065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37143.1"
                     /translation="ALNLNNGQEIISSLPMTRTMLDPFEFVRESHAAAFINGKSVYEV
                     RKRMGKTQADFLGKEINIESAFAEPDYPRPMTLGFSTEYQRYHSNFVTSEGIINDRYD
                     DTDHMTDFSEHVSKNKLLASKKSLKFVLKGSITGKKIASIQGTIQTGDTVKESVYYLR
                     KAGAKSITVIVSYVPTVDGRQVGLYTHNRDLIAHKYVGTVPSIDALNQHIAKETGADS
                     VFYNSPYILSKGIGISEQELWFQEWVRFLDYEAH"
     gene            760..1092
                     /locus_tag="VNB68_07070"
     CDS             760..1092
                     /locus_tag="VNB68_07070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37144.1"
                     /translation="MSVKKDFDVSQWQSRPIRIVKISEKILFFQEIEVGSLELRQYFP
                     RSEAQDANTCLYTVFIQTNLGSVEMKYIESHCNSQELDRICFLLKDLIGISSLINRMM
                     IELESYRR"
     gene            complement(1260..>1512)
                     /locus_tag="VNB68_07075"
     CDS             complement(1260..>1512)
                     /locus_tag="VNB68_07075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37145.1"
                     /translation="KGFIERNIDASLQVIGLYSKFNEILKLISHEYIGRKIASHKIVV
                     STINSTSTMDKIARCWVDIADLVKPVYLMENPRNISNAR"
BASE COUNT          485 a          265 c          303 g          459 t
ORIGIN      
        1 agcattgaat ttgaataatg gacaagagat catttcttcc ctaccaatga cacgtacaat
       61 gttagatccc tttgagtttg tcagagaatc acatgcagcc gcattcatca atggcaaaag
      121 tgtttacgaa gtaagaaaaa ggatgggaaa gacacaggca gatttcctcg gaaaagagat
      181 caatattgag tcggcatttg cagagcccga ttatccaaga cccatgacgc tcggatttag
      241 cactgaatat cagagatatc atagtaattt tgttacttca gaggggataa ttaatgatag
      301 atatgacgac actgaccata tgactgactt ttccgagcac gtcagcaaga ataagttgct
      361 ggcttcaaag aagtcgttaa aatttgttct gaaaggttca attactggca aaaaaattgc
      421 gagcattcaa ggtacaattc aaacaggtga tacggtgaaa gaatcagtat attacttgag
      481 aaaagcaggt gcgaaatcta taactgtcat agtaagctat gttccaactg tcgacggccg
      541 ccaagttgga ctttatacac acaatcgcga tttaattgct cacaagtatg tagggacggt
      601 tccatcgatt gatgcgttga atcaacatat agcaaaggag acaggcgcgg actcagtttt
      661 ttacaatagt ccttatattc tatctaaagg cattggtatt tctgaacagg aattatggtt
      721 ccaagagtgg gtcagatttc tcgattatga agcacactaa tgtcagtaaa gaaggatttt
      781 gacgttagtc agtggcaaag tcggccaatt cggattgtaa agatatctga aaaaatcctt
      841 ttctttcaag aaatagaagt cgggtctctg gagcttagac aatattttcc ccgttcagaa
      901 gctcaagacg caaacacatg tctatacact gtcttcatac aaaccaatct tgggtcagtc
      961 gaaatgaagt atatcgaatc gcattgtaac agtcaagaat tggacagaat atgttttcta
     1021 ttgaaggatc tgataggtat aagttcgctg ataaacagga tgatgattga attagagtca
     1081 tatcgtcgct agcttagcta tttttaatca cggcctagtg cgtcccagga ccttcaacta
     1141 tgaatttaga ataggttctc taaaagcgac ttaggaaata tttgatatca aagtaagggt
     1201 tatttcggtt taataagata tatgcagtcc cgttttacca tctgaattgt ttattaattt
     1261 tatcttgcat ttgatatgtt ccgtggattt tccattaggt atacaggttt aactaaatct
     1321 gctatatcga cccaacatct tgctatttta tccatagttg atgtagaatt aattgtagac
     1381 accacaattt tatggctagc gatttttcga cctatatact catgactaat caactttaga
     1441 atttcgttga acttggaata aagaccaata acttgtaatg aggcgtcaat gtttctctcg
     1501 atgaaccctt tc
//
LOCUS       DATLQL010000706         1244 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_702136, whole genome shotgun sequence.
ACCESSION   DATLQL010000706 DATLQL010000000
VERSION     DATLQL010000706.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1244)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1244)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1244
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_702136"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..535)
                     /locus_tag="VNB68_07080"
     CDS             complement(<1..535)
                     /locus_tag="VNB68_07080"
                     /inference="COORDINATES: protein motif:HMM:NF014016.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CbiX/SirB N-terminal domain-containing protein"
                     /protein_id="HVD37146.1"
                     /translation="MKALLLIDRGSREPGVKQELKKICSIAKYKTGYDYATYCFLEVV
                     PPFIEEGIKRCLDNGADFISVMPYFLYPGMKLKDSVKRSAKICYIQDLRMAITKPLSY
                     HSTLKEVLKDRITQLKIENQIQYSDAECDIVVIGHGSSDKNARTAFDHTIKSLIPYYR
                     NVHSCFLELDKPNIEEGI"
     gene            complement(540..>1244)
                     /locus_tag="VNB68_07085"
     CDS             complement(540..>1244)
                     /locus_tag="VNB68_07085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin biosynthesis protein"
                     /protein_id="HVD37147.1"
                     /translation="PNAQSVITTAADVNETIAVDLVGKEFGWTIENLENVTKVSALMV
                     NEEKIGLYQSTGEKNWWHEPSLPKNVESVHDLAELKSDSFKGALIISDKIVNEPTILS
                     KSVIYRPKSLVIGIGLHWDTRKELIESGIALVMKEEGLSLRCVRNIASINRKADIEGL
                     KEFSNEHSIPIENYDKDMLSDVNVPNPSDIVQRYEGTPSVSESSSILSSKGQLIVPKR
                     KFPPNLTLAVARAVFN"
BASE COUNT          331 a          261 c          202 g          450 t
ORIGIN      
        1 ttatgccttc ttctatattt ggcttgtcga gttctaaaaa acaagagtgt acgtttctat
       61 aataaggaat aagagacttg atagtatggt cgaaggccgt cctagcgttt ttatcactac
      121 tgccatgtcc aataacgact atgtcacatt ccgcgtcaga atattgaatt tgattttcaa
      181 tcttcaactg ggtaattcta tctttaagta cctctttcaa cgtagaatga tagcttagag
      241 gttttgttat tgccattcta agatcctgta tataacatat ttttgcacta cgtttcacac
      301 tatcttttag tttcattccc ggatatagaa aatatggcat aacactgata aaatctgcgc
      361 cgttatcaag gcaccttttg attccttctt ctataaatgg tggaaccact tctaagaagc
      421 agtaggtggc ataatcatat cctgttttat acttagctat tgaacatatt ttcttaagct
      481 cctgtttaac accaggttct ctactgcctc tatctataag caacaatgct ttcattaatt
      541 taattaaaca ccgctctcgc tacagccaat gtgagattgg gtggaaactt tcttttaggt
      601 actattagct gaccttttga acttaatatc gaagacgatt cagaaacact tggagtgccc
      661 tcatatcgtt gtactatgtc agaaggattc ggaacgttta catcagaaag catatcttta
      721 tcataatttt ctattggaat actgtgctca ttggagaact ctttcaatcc ttctatgtca
      781 gcctttcggt ttatggatgc gatattccgg acacatctga ggctaagtcc ttcctctttc
      841 attactaaag caattccaga ttctattaat tcttttcttg tgtcccagtg tagacctatt
      901 cctattacaa gactttttgg ccgataaatt acagacttac tcaaaatcgt tggctcatta
      961 actattttat ctgatattat caaagctcct ttgaatgagt cagattttag ttcagctaga
     1021 tcatgcacac tttctacatt tttcggaagt gatggctcgt gccaccagtt cttctctcct
     1081 gtactctggt acagccctat tttctcttca ttaaccatta gggcgcttac ctttgttaca
     1141 ttttcaaggt tttctattgt ccatccaaat tcctttccaa ccaaatcaac tgcgatggtc
     1201 tcattgacat ctgcagcagt tgttatgact gactgtgcgt tagg
//
LOCUS       DATLQL010000707         1392 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1056362, whole genome shotgun sequence.
ACCESSION   DATLQL010000707 DATLQL010000000
VERSION     DATLQL010000707.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1392)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1392)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1392
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1056362"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..731)
                     /locus_tag="VNB68_07090"
     CDS             complement(<1..731)
                     /locus_tag="VNB68_07090"
                     /inference="COORDINATES: protein motif:HMM:NF024660.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PHP-associated domain-containing protein"
                     /protein_id="HVD37148.1"
                     /translation="MNVELHCHNIFSNYRSNSSRLPFDCGVSLEDQLNEALKKNVQAL
                     FVTNHNTLDGYHQILEYQKAHDRYSNIQIYPGEEITIDNKGHVLAYGLDKEISPGKTL
                     EETLDEIKRQGAVSCAAHPFAVSNGIRKKARLCDMIESFNSNNIDKFSNMVASKFAAE
                     NGLLSIAGSDSHIASTFGRSVNTVEAENNLDAILQKMLAGQFKIQAAQYATAKEIYEH
                     AHYILSNSRAPLLEYASQYHPRAHIA"
     gene            1075..>1392
                     /locus_tag="VNB68_07095"
     CDS             1075..>1392
                     /locus_tag="VNB68_07095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37149.1"
                     /translation="MPRFGLFKKKDGSTSKFKSQDSTVDSRLSGDRISISEARLVLNE
                     VESRSVKDLSVKLSRIKMSVEKSLRHISELADSLEEEKIKLDEPKFESIVHNSRKTVV
                     SSLR"
BASE COUNT          428 a          259 c          267 g          438 t
ORIGIN      
        1 gctatatgag ctcttgggtg atattgcgat gcgtactcta acaggggtgc tctagaattt
       61 gaaagaatat aatgtgcatg ttcataaatt tctttcgctg ttgcgtattg tgcagcctgg
      121 attttgaatt gacctgcaag cattttctgc agtattgcat ctaaattatt ttcagcttca
      181 acagtattga cgcttcttcc gaacgttgat gctatatgag aatcgctccc agcaatggat
      241 agcaagccat tttcagctgc aaacttagat gctaccatgt ttgagaattt gtcgatgtta
      301 ttgctattga aagattctat catgtcacac agacgggcct tcttacggat tccattgcta
      361 actgcaaagg gatgtgctgc acaggaaaca gcaccttgac gctttatttc atccagtgtt
      421 tcctcaagcg ttttgccggg acttatttct ttgtcaagcc cgtaggccaa tacatggcct
      481 ttattgtcta tggttatttc ttcgccagga taaatttgaa tattgctata tctgtcgtga
      541 gccttctgat actcaaggat ctgatgataa ccatctagag tattatgatt ggtaacaaat
      601 aaggcctgta cattcttctt taacgcctcg tttaattgat cctccagact tacaccacag
      661 tcgaagggga gtcgcgagga attgctccta taattagaaa atatattgtg gcaatgtaac
      721 tcaacattca aaatgtttgc cgtgacttta gacctatact aagttataaa aatataatat
      781 ataaactaac ttgaattcgg ctcgagaatt tttttaaata acttgtatgc ctttccgttg
      841 tcataaataa atcttgctat ctgccgttcg ttgttctcgt atttaagcga gtgaggttta
      901 atattaactg actgagaatc acccagggca cgtaatcaca agatataaaa aaagcccatg
      961 tatagtaata attgagatat gagaagaaca aaattaccac aaattgtttc aaactgctac
     1021 acaagcacta cgttccatcc agccctcaca ataggatgca taaaagcttg aaagatgcct
     1081 cggtttggac ttttcaaaaa gaaagatggc agtacctcaa aatttaaaag tcaagatagt
     1141 acggtagatt ctaggctatc tggtgataga atatctattt ctgaagcaag gctggtatta
     1201 aatgaagttg aatcaagaag cgtaaaggat ctctccgtaa agctttcgcg tatcaagatg
     1261 tcagtagaaa aatcattgag acatatttca gagctggccg attctttgga agaagaaaaa
     1321 atcaaactgg atgaacctaa atttgaatca atcgttcaca attcaagaaa aactgttgtt
     1381 tcttctctca gg
//
LOCUS       DATLQL010000708         1315 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1765338, whole genome shotgun sequence.
ACCESSION   DATLQL010000708 DATLQL010000000
VERSION     DATLQL010000708.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1315)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1315)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1315
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1765338"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..853
                     /locus_tag="VNB68_07100"
     CDS             <1..853
                     /locus_tag="VNB68_07100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37150.1"
                     /translation="KDNDGEINILRVITVPNQTPLSAGSAFTESAARAFEPLEKVIEK
                     ESILNHYLVRISHDATEALLSTIEEQRIDLLITEFETFRRNKALQALVTCKVLAVLAG
                     GTSDEELVLDESDKNNEPKSESDRQKKTMVVLYDGGDHSDIVLKTASWLEHSGRFKVT
                     VLSIKKKEQAAEEKQEKEEHTQYLEQIGVEFTEVYISEEIENNPEEYAEVIVSSINAS
                     QPDLVITGLTIGKFSVLDNPYFAAMLDRLNCPAIVARTFIIPGVSRIRAVMFSIFHRI
                     LEIFDKK"
BASE COUNT          440 a          229 c          287 g          359 t
ORIGIN      
        1 aaaagataat gatggagaaa taaatatcct tagggtcatc accgtaccaa atcagacgcc
       61 actttctgct ggttccgcat tcacagagtc tgcagcaaga gctttcgaac cattagaaaa
      121 agtcatagaa aaggagagca tactaaatca ttacctcgtt agaatttctc atgatgctac
      181 tgaagcctta ctttccacga ttgaggagca gcgcattgac cttttgataa cagaatttga
      241 aacattccgg agaaataaag cgttgcaggc ccttgtaacg tgtaaagtgt tagctgtttt
      301 ggccggcggc actagcgatg aggagcttgt tttggacgaa tctgataaaa acaatgaacc
      361 aaagtccgaa tcggatagac aaaagaaaac catggttgtt ctgtatgacg ggggcgacca
      421 ttcagatatt gtgctgaaga cggcaagctg gctagagcat tctggaaggt ttaaggtcac
      481 tgttttgtca attaagaaaa aagaacaggc agcagaagag aaacaagaga aggaagaaca
      541 cacccagtat ttggaacaga ttggagtaga atttacagaa gtctatattt ccgaggaaat
      601 agaaaacaat ccggaagagt atgccgaggt aattgtgtct tcaatcaatg cttctcagcc
      661 agatctagtc ataaccggat tgactattgg taaattcagt gtactggata atccatattt
      721 tgccgcaatg ttggataggc tcaactgtcc ggctatcgtt gctagaactt ttatcattcc
      781 gggtgtaagt cgaataagag ctgttatgtt ttccattttt catagaatat tagagatatt
      841 tgataaaaaa taattccaaa aaaggtaaac aaagtaaaca atgcaatagt aagggtgtac
      901 ttggtagtat cataaatcgg gtactaaaac aaaggaggaa taccaaaccg aaacaaggta
      961 gaccacatgt cttcctctac cgagactata cgagagttag aagtagtgta gaaagattct
     1021 ttggatggct caaaagcttt aggcgcatcc agacgtggta tgaaagacta gtatcaacgt
     1081 atcttgggtt tgttcaacta ggctgcgtaa taatactaat gaaagttgtc agatgagctc
     1141 gtgatcatcc cctgtatgag ttgtcggctt gttaaattta ataaatgtca ttacaaatga
     1201 tttccaagta gtaaaagact ggaatctgat gtcaaatttc aaagtaaccg attatcactg
     1261 tattccgtct atgcggctat ctaattacct caccgtgcaa tggtatattt aatca
//
LOCUS       DATLQL010000709         1411 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1056673, whole genome shotgun sequence.
ACCESSION   DATLQL010000709 DATLQL010000000
VERSION     DATLQL010000709.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1411)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1411)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1411
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1056673"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            36..>1411
                     /locus_tag="VNB68_07105"
     CDS             36..>1411
                     /locus_tag="VNB68_07105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HVD37151.1"
                     /translation="MSRYRCPNCNSHSSIDVNKVHDGRLMFACSRCNVCALVPSMVTH
                     DDAYMEFLDMYDNGHITKVEDLKSLMQQERLLRPYSEIDAMILHNNASENEMLKTVLY
                     SQKNYVVDYRVIQEPEPEPGGALTDLPIDEAIITALAGRQIKKLYRFQEESIKKILQG
                     KDVVIVAPTASGKTEAFCLPIVQKIAEEGQYQFAPLSSSSSTSSSRIKRPGRVFAIFV
                     YPTKALARDQLPKIKHFAEPLGLHVNIFDGDTSKEQREYILSVSVPEIIVTNFDVLHY
                     HLLNRTNFSRLIRTAKFLVIDEAHIYTGVFGANVHYIIKRLERLSTNKKMQIIAASAT
                     LPNAGEFCMSLFGRKMDVVYGKGRRGKINFVILFPSLHSHRTLMLDLVKQTISRNHKT
                     IAFNKSHLSSELLAFYLSKQGIRIRVHRAGLLPSERKIVEHSFRNGSLLAISATPTLE
                     LGIDIGDI"
BASE COUNT          453 a          260 c          282 g          416 t
ORIGIN      
        1 aaaaaattta tttcgttaaa ggcttcttga actctatgtc tcgttataga tgtcctaact
       61 gcaactctca tagttcaata gatgtgaaca aagtgcatga cggacggctg atgtttgctt
      121 gttctaggtg caacgtttgt gctcttgtgc cttctatggt tacccacgat gacgcgtata
      181 tggaattctt ggatatgtat gataatggac atatcacaaa ggtcgaagat ctaaaatcgc
      241 tgatgcaaca ggaaagactt ttgcgtccat attctgaaat agacgccatg attttacata
      301 ataatgctag cgagaacgaa atgctcaaaa ccgtattata ttcccaaaaa aattatgttg
      361 ttgactatag ggtaattcag gagcccgaac ctgaacctgg aggcgcactt acagaccttc
      421 caatagatga ggctatcatt actgctttag ctggaaggca gatcaagaag ctatacagat
      481 ttcaagaaga gtcaataaag aaaattctgc aaggaaaaga cgtagttatt gttgccccga
      541 ctgcttctgg caaaacagag gcattttgtt tacctattgt acaaaaaatc gccgaagaag
      601 gtcaatatca gtttgcgccg ctgtcgtctt cgtcgtcgac gtcatcttct agaataaaaa
      661 ggccaggaag agtatttgcg atatttgttt atcctacaaa ggctctcgct agagatcaat
      721 taccgaagat aaagcacttt gcagagcctc taggattgca tgtcaatatt tttgatggag
      781 atacctctaa ggaacaaagg gaatacatct tgtccgttag tgtccctgag attatcgtta
      841 caaactttga cgtacttcat taccatcttt tgaacagaac aaatttttca cgtttaatta
      901 ggacagccaa gtttttagtc atagatgagg cacatatcta tactggtgta tttggagcca
      961 atgttcatta tatcataaag agacttgaaa ggttatctac aaataagaag atgcaaataa
     1021 tagctgcatc agcaactctg ccaaatgcag gtgagttctg catgtccctc tttggaagaa
     1081 aaatggacgt tgtatatggc aagggacgaa gaggtaaaat taactttgtg atcttatttc
     1141 catcattaca ctctcataga acattgatgc ttgatcttgt caagcagaca atttcaagaa
     1201 atcataaaac aattgccttt aacaagtccc atttgagttc agagctctta gcattttatt
     1261 tatctaaaca aggaatacga ataagggtac atagggctgg actcttaccg tcagagcgta
     1321 aaatagtaga acattcattt agaaacggct cattattagc gatctctgcc acacctacat
     1381 tagagttagg catagatatt ggcgatatag a
//
LOCUS       DATLQL010000710         1044 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1217241, whole genome shotgun sequence.
ACCESSION   DATLQL010000710 DATLQL010000000
VERSION     DATLQL010000710.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1044)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1044)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1044
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1217241"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..680)
                     /locus_tag="VNB68_07110"
     CDS             complement(<1..680)
                     /locus_tag="VNB68_07110"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HVD37152.1"
                     /translation="MTQMLKKVKETSGNSECCSDECCSTDTSPKQEIKEKIKERYGKI
                     ALSGNSDSCCMPECCSSDSSPMQSSVAIGYDDKILETIPQSSILGLGCGAPLNFAKLE
                     EGETVVDLGSGAGIDAFLASKQVKYSGKVIGIDFTDDMLEKASKAARENGFSNVEFRK
                     GDIENKIPIGDNLANVAISNCVINLTTNKVKAFKEVYRILKKGGKGRMVISDLITSKE
                     VHGESINA"
     gene            726..>1044
                     /locus_tag="VNB68_07115"
     CDS             726..>1044
                     /locus_tag="VNB68_07115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HVD37153.1"
                     /translation="MTLGVKLETKRQQVNHLRIYNDACNFEGYNPADLMSETAKLRKL
                     ITKRGTLEMLIPLCCTSDPVRHKQFRGLLKGFSSKTLARRLKELEKGGILERQVYNEI
                     PPRV"
BASE COUNT          314 a          200 c          190 g          340 t
ORIGIN      
        1 tctgcattta ttgactcacc atgaacttct ttacttgtaa tgaggtcaga aatgaccatt
       61 cttcctttgc ctcccttctt caagatgcga taaacttcct tgaaggcttt gactttattt
      121 gtagtaagat tgataacaca attgcttatt gcaacattgg ctaggttatc tccaattgga
      181 attttgtttt ctatatcacc ttttcggaac tccacgtttg aaaaaccatt ttcacgtgct
      241 gccttgctag ctttttccaa catatcgtct gtaaagtcta tgccaatgac tttaccacta
      301 tacttaacct gttttgatgc taaaaatgcg tctattccag ctcctgaacc caaatcaact
      361 acagtctctc cttcttccaa tttggcaaaa ttaagagggg caccgcaacc aaggccgaga
      421 atagacgatt gtggtattgt ttctaatatt ttgtcatcat aaccgattgc aacagatgat
      481 tgcataggtg aagaatctga actacaacat tcgggcatac aacaagaatc agaattaccg
      541 cttaatgcaa tcttaccgta tctttctttg attttttctt ttatttcttg ttttggagat
      601 gtatctgtac tacaacattc atctgagcaa cattcagaat taccacttgt ttctttgact
      661 ttttttaaca tttgagtcat actattgttt tcataggaaa ctatttaagt tgtcaagagg
      721 acttattgac actaggtgtc aaattggaaa ctaagagaca acaggtaaac catttacgca
      781 tttacaatga tgcatgtaat ttcgaaggat ataacccagc tgacctgatg tcagagactg
      841 caaaattaag aaaattaatt accaagaggg ggactttgga gatgttaatt cctttatgtt
      901 gcactagcga ccctgtcaga cataagcagt ttagagggct tttgaaaggc tttagcagca
      961 aaacactagc aagaagattg aaagaattgg agaagggtgg catactggag aggcaggtgt
     1021 ataatgagat accaccaagg gtag
//
LOCUS       DATLQL010000711         1451 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1945325, whole genome shotgun sequence.
ACCESSION   DATLQL010000711 DATLQL010000000
VERSION     DATLQL010000711.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1451)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1451)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1451
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1945325"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            224..>1451
                     /locus_tag="VNB68_07120"
     CDS             224..>1451
                     /locus_tag="VNB68_07120"
                     /inference="COORDINATES: protein motif:HMM:NF012428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HVD37154.1"
                     /translation="MSLYDFHSYVNKTNLSKAWYERACKVFPGGVSHNIRFFPPYPFF
                     VERAHGKNLQDVDGNTFVDFWMGHWALILGHSPQNVVQPLEKALGQGTIFGTVNDTSV
                     LLGEIIQKFVPSAELMRFCSTGTEATMYATRIARAFTGKRIVAKVLGGWHGFNSDLMH
                     SVNYPFEINEGLGLIGGEGDFVESLPFNDLAGSIAILDTVKDDLACIILEPILGGAGG
                     VVGEREYLVGLREYANKNNVLLIMDEIVTGFRLNFGTLSASYGIEPDLLTLGKIVGGG
                     FPIGVVSGKEEIMKIADTSLKEKRDRCYVGGGTFSSNPISMKAGLLTMDYLKRNNETI
                     YTKINRLGKEARSKLHQLFADFGIDVEVTGLGSLINVHFLNQNVKIIKNATDAAMTDQ
                     EKLLKYHLCLLADYGIF"
BASE COUNT          436 a          258 c          333 g          424 t
ORIGIN      
        1 caagcttcgg cgaggtgttc agcctgccgt gaccaatagc ccaaggcacc tgaaaaattt
       61 ctactggtta gcatggtagg tcgcctttaa ggaacgtaaa gaataatcag tatcgagtcg
      121 aagaaacttg ttcttgttgc atgatgattt ttttacctca ataaacccat gacaaaaact
      181 gtaatatgta agtaaaatga aggctagata aatctgatta cacatgtcac tttacgattt
      241 tcattcttat gtgaacaaaa ctaatttatc caaagcttgg tatgaacggg catgtaaagt
      301 gtttccgggc ggagtcagtc acaatattag attctttccg ccatatccat tctttgtaga
      361 acgagctcac ggcaagaatc tccaggatgt agatggaaat acgtttgttg atttctggat
      421 gggtcattgg gcactaatat tgggtcattc gcctcaaaac gttgtccaac ctcttgaaaa
      481 ggcgttgggt caggggacaa tatttggaac tgttaatgat acaagtgtac ttcttgggga
      541 gataattcaa aaattcgtgc caagtgccga gctcatgaga ttctgttcaa ctgggaccga
      601 agcaactatg tacgctacaa ggattgctcg cgcatttacc ggaaaaagaa ttgttgccaa
      661 agtacttggg gggtggcacg gatttaattc tgacctgatg cactcagtca attatccctt
      721 cgaaataaat gaagggttgg gactcattgg gggcgaagga gattttgttg aatcattacc
      781 ttttaacgat cttgccggtt ctatcgcaat tttggatact gtcaaagatg accttgcttg
      841 cattatactc gagcccatat taggaggggc tggaggcgtt gttggagaaa gggaatacct
      901 agtcggcttg cgagaatatg caaataaaaa taatgtgcta ttgataatgg atgagattgt
      961 cacaggattt agactaaatt ttggcacttt atctgcatct tatggtatag aaccagattt
     1021 attgactctc ggaaaaatag ttggaggagg gtttccaata ggcgttgtta gtggcaagga
     1081 ggaaataatg aaaattgctg atacgtctct taaggaaaag cgtgatcgat gctacgtggg
     1141 tggggggaca ttttcttcaa acccaatatc aatgaaggca ggccttctta caatggatta
     1201 tctaaaaagg aacaacgaaa cgatctatac aaaaattaat cgacttggca aggaagctcg
     1261 gtccaaactc caccaattat ttgctgattt tggtattgat gttgaagtca ctggacttgg
     1321 atcgcttatt aatgtccact ttctgaacca gaatgtgaag attataaaaa atgcaaccga
     1381 tgcagcgatg actgaccagg aaaaacttct caaatatcat ctctgtcttc ttgctgacta
     1441 tggaattttc t
//
LOCUS       DATLQL010000712         1712 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_882496, whole genome shotgun sequence.
ACCESSION   DATLQL010000712 DATLQL010000000
VERSION     DATLQL010000712.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1712)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1712)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1712
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_882496"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            251..>1712
                     /locus_tag="VNB68_07125"
     CDS             251..>1712
                     /locus_tag="VNB68_07125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HVD37155.1"
                     /translation="MVSKQQRIVCFLIILLSVSLLVFLTTDISRAKQQQQDPFSTQQL
                     LPHQTATLSQQSEASNNITPAPILKDSDLEVQLVTEGLKSPTSMAFIGNQGDMLILEK
                     SGEVILFVSENKSKITLLNFTVNDQTERGLLGVAVINNNNNNMSALHTTAIPARSNNQ
                     TITTRENSTNDSTSTTTSPSSTSTFVFFYLTEASKEDRSHVLGNRIYRFEWNDTDKSL
                     SNGKLILDLPVLPGENHNGGKLIADSENRHIYAVIGDLNRRGMLQNFKNGSLPDDTSV
                     ILRINPDGSPAQGNPFIDVSRTDGRYSNLSKYYAYGIRNSFGLALDPVTGILWDTENG
                     LADFDEINIVRPGFNSGWTKVMGPIGRSNVTPENDLVNFLGSSSYADPVFSWGSTQGV
                     TDIEFYDSDKLGDDYANNIFVGDANNGDLYYFEVDEDRSGLRFGQAGLSDDLIASNER
                     QRAEVIFGTGFPSSITDIQTGPDGYLYVLTFHPTQGT"
BASE COUNT          563 a          317 c          340 g          492 t
ORIGIN      
        1 taccttcttt cgccgtatga cattaatcaa atgcataatg gttcttctct ataatataaa
       61 tggtggattg attgctcaag tttgatctta tgccaagagg agggtgacat tttatcgaac
      121 atcaaaacct taccatagaa cttgaacaca aatgtaacgg tcccggacgt tctctttttg
      181 agatattgtt agaataaaaa cttagacaat ccataaaccc tttttagagg gtccatcaac
      241 taaacgtgac gtggtttcaa aacaacagag aattgtttgt tttttaatta ttctattaag
      301 tgtctcgctt ctagtctttc ttactacaga tattagcaga gcgaaacagc aacagcagga
      361 tccattctcc acacaacaat tattgccaca ccaaacagca acattatctc aacaatcaga
      421 agcatctaac aatattactc ctgctcctat cctcaaggat agcgacttgg aggtacagct
      481 cgtgacagag ggacttaagt ctccaacaag tatggccttt attggtaatc aaggtgacat
      541 gctaatttta gaaaaaagtg gcgaagtaat tctctttgta agtgaaaata aatctaaaat
      601 aacgttgttg aattttactg ttaacgatca gactgaacga gggctgcttg gagtggctgt
      661 aattaataat aataataata atatgtcagc cttacacacc acagcaatac cagcacgtag
      721 taataatcaa acaataacca cacgagagaa tagcaccaat gactctacct caacaacaac
      781 atcaccatca tcaacatcaa cgtttgtatt tttctacctt accgaagcta gcaaagaaga
      841 tagatcgcat gtattaggca acaggatata taggtttgaa tggaacgata cagacaaatc
      901 tctttcaaat ggaaaattga ttttagatct ccccgtgtta ccaggagaaa accataatgg
      961 tggcaaatta atagctgatt cagagaatag gcacatttat gctgtcattg gagatcttaa
     1021 cagaagggga atgcttcaga atttcaagaa tggttctctg cctgatgata catcagtgat
     1081 actaagaata aatccggatg gttcaccggc tcaaggcaat ccatttatag atgttagcag
     1141 aacagatggt agatactcga atttaagcaa gtattatgct tatggcattc gaaacagctt
     1201 tgggctagca ctagatcctg taacaggtat tctatgggac accgaaaatg gtctcgctga
     1261 ctttgatgaa attaatattg ttagaccagg ctttaacagt ggatggacga aggttatggg
     1321 tccaattgga agaagtaacg taacacctga gaatgacttg gttaactttc ttggttcttc
     1381 ttcatatgca gacccagtat ttagctgggg aagtactcaa ggtgttacgg acatagaatt
     1441 ttatgattcc gataagctgg gtgatgatta tgccaataat atcttcgtcg gagacgctaa
     1501 caatggtgac ctctactatt ttgaggtaga cgaagataga tctggtttga gatttggaca
     1561 ggcaggacta tctgatgatt taatagcaag caatgaaaga cagagggccg aagtaatatt
     1621 tggtactggc tttcccagta gtattactga tatacagacc ggtcctgatg gatacctata
     1681 tgtgctaaca tttcatccga cacagggtac ta
//
LOCUS       DATLQL010000713         1215 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_168384, whole genome shotgun sequence.
ACCESSION   DATLQL010000713 DATLQL010000000
VERSION     DATLQL010000713.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1215)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1215)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1215
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_168384"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..585
                     /locus_tag="VNB68_07130"
     CDS             <1..585
                     /locus_tag="VNB68_07130"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HVD37156.1"
                     /translation="IIERQIRWLSKLGIKDIIVCVGHLKERIIAHLNDGQEYDVVVKY
                     VAEKEPLGTGGALRNAKKSIVANSQDKGFFVINGDILTDINPLTLIDLGSNSIALVNL
                     RSTFGIVETVDNIVSHFVEKPAIHDKWINAGIYYFSADVFQYLPEFGNFEITALPSLA
                     KERKLKALKYPNNYWRSIDSHKDVEEATEELAQK"
     gene            664..>1215
                     /locus_tag="VNB68_07135"
     CDS             664..>1215
                     /locus_tag="VNB68_07135"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HVD37157.1"
                     /translation="MINFARSADHFVKADSIWMPESWGREAFVMLGAISQVTKRIKLG
                     TSIISIFARSPATTSMAASTLDTISSNRVIIGIGASTPVLAQNWHGIEFREPLKRMQE
                     FAECFSRIVSGDQVNYDGKFFRINNFRIMNVSTRKRIPVYFGAVNSGMINLATKIADG
                     VILYLHPLHKLTDTVRGINSNIGK"
BASE COUNT          400 a          216 c          260 g          339 t
ORIGIN      
        1 attatagaaa gacagatcag atggctttct aaattgggaa taaaggatat cattgtttgt
       61 gtcggccatc tgaaggagag gataattgca cacctgaatg atggtcaaga atatgacgtg
      121 gtggtgaagt acgtggcaga aaaagaacct ctcggtacgg gaggagcatt gaggaatgca
      181 aaaaaaagca tagttgcaaa ctcacaggat aagggcttct tcgtaattaa cggagatatc
      241 ttgactgaca ttaatcctct aactttaatc gatcttggaa gcaattctat agctttggtt
      301 aaccttcgaa gtacgtttgg aatagtcgaa actgtcgaca atattgtttc ccatttcgtg
      361 gaaaaaccgg ccatacatga caaatggata aatgcaggaa tatactattt ttctgccgat
      421 gttttccagt atcttccaga attcggcaat tttgaaatta ctgccttacc ttctctcgca
      481 aaagagagga agttaaaagc tctaaagtat ccaaataatt attggcgttc tattgactca
      541 cataaagatg ttgaagaagc gacagaagaa ttggctcaaa agtaaaaaca aacaaacaaa
      601 caaatgaatt gtgaaaagac acgaatcggt tacaatccaa gtagtctctt tgggagtctt
      661 gatgtgatta attttgcaag atcagctgac cattttgtaa aggcagattc tatctggatg
      721 cctgaatcat ggggaaggga agcattcgtc atgttaggtg ccatttctca agtaacaaag
      781 agaataaaac ttgggacttc cataataagc attttcgcaa ggtctcctgc taccacctca
      841 atggctgctt ccaccttaga taccatctcg tctaaccgtg tgatcattgg tatcggtgcg
      901 agtactccag tgttagctca gaattggcat gggatagaat ttcgcgagcc actgaaacga
      961 atgcaggaat ttgccgaatg cttctcaagg attgtaagtg gcgatcaagt aaattatgat
     1021 ggcaaattct ttagaattaa taactttaga atcatgaatg tatcaaccag aaagagaata
     1081 cctgtctatt ttggcgcagt aaacagtggg atgatcaatc tagccactaa aattgcagat
     1141 ggtgttatac tatacttgca tccattgcac aagctaacag atactgtccg aggcatcaat
     1201 tccaatattg gaaag
//
LOCUS       DATLQL010000714         1296 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1946883, whole genome shotgun sequence.
ACCESSION   DATLQL010000714 DATLQL010000000
VERSION     DATLQL010000714.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1296)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1296)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1296
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1946883"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..325
                     /locus_tag="VNB68_07140"
     CDS             <1..325
                     /locus_tag="VNB68_07140"
                     /inference="COORDINATES: protein motif:HMM:NF016050.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cyclophilin-like fold protein"
                     /protein_id="HVD37158.1"
                     /translation="AECEIVRHLSPLTISRILKALPLRDRVHRLEDKLVYIETGLMIG
                     AEKQRTQFKRGDVAYMTSNASLCVFIRDSAASAMNPLGIIRSKLDLLEATRTGDVIVL
                     KYPDN"
     gene            complement(459..830)
                     /locus_tag="VNB68_07145"
     CDS             complement(459..830)
                     /locus_tag="VNB68_07145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37159.1"
                     /translation="MGGVKKKPIGSSEKTASSAGPAAADAKAKKKGDSKKGGGTGSAS
                     GGGGKTQSKQKLSVLVEESHGKRALQNMKALTIQGFARAVGVKISVANAYIKSLEAKG
                     IVKSTGGYSGHRVYQVIKPPQ"
     gene            975..1271
                     /locus_tag="VNB68_07150"
     CDS             975..1271
                     /locus_tag="VNB68_07150"
                     /inference="COORDINATES: protein motif:HMM:NF016553.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37160.1"
                     /translation="MDFSTIVDTFEQMDQTSSRLALTEFLVRLLKKTPIDIIDKVIYL
                     IQGKLYPDYEGIELGLAEKMALRSLANSIGIDIATLVEVYRKTGDIGDSAQELM"
BASE COUNT          374 a          273 c          237 g          412 t
ORIGIN      
        1 tgctgaatgc gaaattgtac gccatctttc acctcttact attagcagga ttttgaaggc
       61 tttgccatta cgagatagag tgcaccgttt agaagataaa ctggtttata ttgaaacagg
      121 cctaatgata ggagccgaga agcagcgaac acaattcaag cgcggagatg tagcttacat
      181 gacatctaat gcgtcgctat gtgtttttat tagggactcg gctgcgtcgg cgatgaatcc
      241 attgggcatt atcagatcta aattagatct cctagaagca acaaggacag gagacgtaat
      301 tgttcttaaa tatcctgata attgaaatta tactctttct tcactggcat ttccaatgaa
      361 aaatctcata ttcactatta atcatctaag gatagtaaat agacagaatt tatctattaa
      421 gcccagcttt agtctctaaa aattctatct attctttttc actgaggtgg ttttatgact
      481 tgataaactc tgtgtccgct atagcctcct gtgctcttca cgataccttt agcttccaaa
      541 gacttgatgt aagcattggc tacagaaatc ttcacaccta ctgctcttgc gaagccctgg
      601 attgtaagag ccttcatatt ctgcaaagcc cttttaccgt gagattcctc taccaaaact
      661 gaaagcttct gttttgactg cgttttgccc ccgccgccgc tagcacttcc tgttcctccc
      721 ccttttttgc tgtctccttt ctttttagct ttagcatctg cagctgctgg tccagctgag
      781 gaagcagttt tctcagaaga tccaatcggt tttttcttta ctcctcccat aacgccttat
      841 tagaaaacta ctaccacttt ataatctata ggggtaatat tcaagaaatg cgagtatgaa
      901 attaaagaag ccgtacacaa tgcttctata ctttttactt aaatgaattt aaacaacaat
      961 tgcaaaatta cagagtggat ttttccacta ttgtagacac ttttgaacaa atggaccaga
     1021 catccagtag gctcgctcta actgagttcc tagttcgtct tttgaaaaaa actccgatcg
     1081 atatcataga taaggtaatt tacctaattc aaggcaagct ttatcctgat tatgaaggaa
     1141 ttgagctagg tctagccgaa aagatggctt tacgttcatt agctaattct attggtatcg
     1201 atatcgctac tttggtagaa gtctatagga agaccggaga tatcggagat tccgctcagg
     1261 agttaatgta aaaaaagaac cagactaccc ttttcg
//
LOCUS       DATLQL010000715         1453 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_349418, whole genome shotgun sequence.
ACCESSION   DATLQL010000715 DATLQL010000000
VERSION     DATLQL010000715.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1453)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1453)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1453
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_349418"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(150..563)
                     /locus_tag="VNB68_07155"
     CDS             complement(150..563)
                     /locus_tag="VNB68_07155"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HVD37161.1"
                     /translation="MTTRLQTIGKSETAKDAAKKMVDKNVSSLVVIDDDNQTVGIITE
                     RDITRGVCIHDVASKDFKIHHLMSTSLATIDPNSSAENAANQMLQSKVRHLIVKDGDR
                     PVGIITASKFIDYLDEQLTRDDPNARVLRTLKDEV"
     gene            complement(1255..>1453)
                     /locus_tag="VNB68_07160"
     CDS             complement(1255..>1453)
                     /locus_tag="VNB68_07160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37162.1"
                     /translation="AIGHHHNMLSVIELLERKFAFKEVDYAIGQGVIAFNRPNPRVNL
                     ASIESANRSTVNSRNTNRQPI"
BASE COUNT          433 a          289 c          265 g          466 t
ORIGIN      
        1 acagtcagat acaagttatt atattttgca attatgacgg atttgaaaat ccgttatcga
       61 agttcataag gtttgcataa actcgtctta ccagcgggct tatcgactct ttttttaact
      121 gtcttcgtaa tacaaccgac ccttccaatt cacacttcgt cttttaaagt tctaagtact
      181 ctagcgtttg gatcatctcg ggttaactgt tcatccaagt agtcgatgaa tttactagca
      241 gttattatgc ctaccggcct atctccatct ttgactatga gatgtctgac tttactctgc
      301 aacatttgat ttgcggcgtt ctcggctgat gaattgggat caatcgttgc cagtgaggta
      361 gacataagat gatgtatttt aaagtctttg ctagctacat catgaataca tacacctctc
      421 gtaatatctc gttcagtgat gatgcccaca gtctgattat catcatcaat aactacaagt
      481 gaactaacgt tcttgtcgac catcttcttt gctgcgtcct tggcagtttc agactttccg
      541 atagtctgca atcttgtcgt cattatgtct tttacactct ttgtcacact tcataaagct
      601 atagaagatc aatatatttt aatttgaagg cgaacaagat tctgacagtg ctcctactgc
      661 atgtcggtta gaactttaac atcttcacca atggagcaca gatttcagaa gtagcgaact
      721 ttagtaacgc ctaagatttg ctatgtctct cgattcttga acgaataggt gaatgactcg
      781 aaggtaaatg tacgagaaca gtcggtgaat taatgtcgga atctatatgt gcagaatgtt
      841 atatacataa gtttgctgta taaccgtcca tacggtaatc gttatatacg tcaattcaga
      901 ttttatgttt gtgagtaaga aggaagaagt aattaaaacc acttgtggat tcctaaacct
      961 ctgatgaagc aaataaaaca ggctgcgttg gataatgata ctacagtatc acaaatcgtg
     1021 atccaagcct tcaaagagtt tctcgacaaa aaggagaaat agaaatggct gctcggacat
     1081 tttcgtgttc caattgtaat gagccgttca gtgtacacct tccagaagat gcgacaagag
     1141 tagactttag taaatgtcaa gatatagact caacttatca caatttagag cgcacaatac
     1201 aatgtcagaa ttgtgatcac aaaaacacca tttactattg tactgaaact catcctatat
     1261 tggctgacga ttagtattcc gactatttac tgtgctccta ttagcgcttt caattgatgc
     1321 caagttaacc cttggatttg gcctattgaa agcaataacg ccttgtccta ttgcgtaatc
     1381 aacctctttg aatgcgaatt tacgttccaa caactctatt acggaaagca tattatgatg
     1441 atgaccaata gcg
//
LOCUS       DATLQL010000716         1648 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1058923, whole genome shotgun sequence.
ACCESSION   DATLQL010000716 DATLQL010000000
VERSION     DATLQL010000716.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1648)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1648)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1648
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1058923"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            88..>1648
                     /locus_tag="VNB68_07165"
     CDS             88..>1648
                     /locus_tag="VNB68_07165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HVD37163.1"
                     /translation="MNTDNVHIKQNAEISKIETNSIVSELNRQLFLVADEILEREKPR
                     IKYPWPITGLAVYLNKSLPIRIIYKEVIEKLPGFGKSIIQEANETLADMKEEKLLMAI
                     CQLASKKGVQADRIDSIRALAKYLSHSYEVQGLGEGSTKYHNFHHSLEVTYLCLQLIP
                     AEFHGYKFFPNEIEMVIVAGLLHDHDPMQVKSIIDSNGIKEPEAPKVSRTIEEIQRTR
                     IHDAYFVLNAMEFERFFPGTPGISGLDSTFRPEFPSSGERPYESLVVEAIIWRTDFPY
                     FKQKNAQERFAKLLAELRGRGQDTNKITLLAEIVWLADLSVTYMGSDPLRAWNRVTSL
                     YDELYLSKLEAVSRTDTFFSDFADKKIFQELLKVKSFPEIFRNRWNLVYQFFHEGNPS
                     TSLNRTIENAHKLFLKVNMEIGMLYGKMMYFIAGNNWAEYFIGIGRNHSEVSKAKAEF
                     VCLEPQNASAFWGEPKKLIPNMPDGSIDNFLLRMPRKYYRIETMQDKVSLRALIEMLP
                     DKLRNDGTLQIL"
BASE COUNT          552 a          300 c          348 g          448 t
ORIGIN      
        1 actataaagg aaaacctaag cgtcggttca gtttccgcgc cgcggaaaag attccggtat
       61 agagtaaaga ttccacagtg ggttgtgatg aatacagata atgtccacat aaaacaaaat
      121 gcagaaatat ctaaaattga aactaattca attgtatccg aattgaatag gcagctcttt
      181 ttggttgctg acgaaatatt agaaagggaa aagccacgga taaaatatcc ttggcccatt
      241 acaggacttg cagtatatct gaataagagt ttaccaatac gcattattta caaagaagtt
      301 atagaaaagt tacccggatt tggtaaatcc atcattcagg aagcgaatga gacacttgct
      361 gacatgaaag aagaaaaact gctcatggct atatgtcaac ttgcttctaa aaagggtgtc
      421 caagcagaca gaattgatag catcagggca ttagcaaaat atctcagtca ttcttatgag
      481 gtacaaggct taggagaagg atccactaaa tatcacaact ttcaccatag cctcgaagta
      541 acttacttgt gtctacagct aattcccgct gaatttcatg gatacaaatt ttttccaaat
      601 gaaattgaaa tggtcatagt ggccggacta ttgcacgacc atgatccgat gcaggttaaa
      661 tccattattg attccaatgg cattaaggaa ccggaggcgc ctaaggtatc aagaacaata
      721 gaagaaattc agcgtaccag gattcatgat gcctattttg ttctgaatgc catggaattt
      781 gaaagattct ttcctggcac ccctggaatt tctggtttag attcgacatt ccggccagag
      841 tttccatcct ccggagaacg cccatatgaa agcttggtag tcgaagcaat aatttggcgg
      901 acagattttc cgtactttaa gcagaaaaat gcgcaggaaa ggttcgcaaa attgcttgcc
      961 gaactaaggg gaagaggcca agatactaat aaaattacgt tacttgccga gatagtgtgg
     1021 cttgcagatc tttcagtaac ttacatggga tccgatcctc taagagcatg gaatagggtt
     1081 acaagtttgt atgatgagtt gtacttgtct aaactggagg cggtttccag aacggatact
     1141 tttttttctg attttgcaga caagaagatc tttcaagaat tattaaaggt aaaaagtttt
     1201 ccagaaatat tcaggaatcg ttggaacctc gtttaccaat ttttccatga gggtaaccca
     1261 tcaacatcac taaatagaac tatagagaat gctcacaaat tgtttctcaa agtaaatatg
     1321 gaaattggca tgctatacgg taagatgatg tacttcattg caggtaataa ttgggcggaa
     1381 tatttcattg gaataggcag gaaccactca gaggtatcca aggcaaaagc agaatttgtc
     1441 tgtttggaac cccagaacgc atctgccttc tggggagaac ccaagaaatt aattccaaat
     1501 atgcccgatg gatcgatcga taacttcctt ttacgaatgc caagaaaata ttatcgcatt
     1561 gaaacaatgc aggacaaggt atctctgcga gcgttgatag agatgctgcc agataaatta
     1621 agaaatgatg gaacacttca gatattaa
//
LOCUS       DATLQL010000717         1327 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1947512, whole genome shotgun sequence.
ACCESSION   DATLQL010000717 DATLQL010000000
VERSION     DATLQL010000717.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1327)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1327)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1327
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1947512"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            252..>1327
                     /locus_tag="VNB68_07170"
     CDS             252..>1327
                     /locus_tag="VNB68_07170"
                     /inference="COORDINATES: protein motif:HMM:NF024627.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="right-handed parallel beta-helix
                     repeat-containing protein"
                     /protein_id="HVD37164.1"
                     /translation="MIIPKALFMTTIAAILIFSMASISYQQQVELPFDDNGEAAVVEE
                     EEEEEAEAAVEEEEGEEEAACIEYEAAENTIAINCNASFLDVVRAINDPEILEQEDDG
                     QYILNANLEVGDGITFKMNSSGDNLQYLKISGENGIIVQGRIEISGIKITSWDTETDS
                     PISQTETGSVPRTFINLRVSEGGFIENSEVAHIGYDAPPRRGIDLGEAGEGPSHDFAI
                     RNSTIHDNWMGFYSAGAYNITLDGNEFFNNILYAIDPHTATHNMTVSNNKIHNNQGIA
                     VICSLDCYNIIYEQNEVYNNVESGLMFSRATHDSIIRNNLIYNQYGSAYPISIFESRN
                     NEIYGNIIRNSTTGISVHNPLELD"
BASE COUNT          466 a          240 c          260 g          361 t
ORIGIN      
        1 cagctgcctc cataatccct cactgcttac cgcctttcat ggtattgaag cgaacttgta
       61 caacagattg atgtgttaat cgaatatgtt attagagaaa ttacaaaatg aattttccta
      121 cctattattg accctataaa gcgctataaa agaactcata tagctgtgat atagaatagg
      181 ctctacatct ttttatttct atagtaggaa cccttttgtt taaatgttcg aaaaggagga
      241 ctatgatgac aatgattatt cctaaagcac tttttatgac cactatagcg gctattctca
      301 ttttctctat ggccagcata tcataccagc agcaggtgga actccctttt gatgataatg
      361 gagaagcagc agtagtagaa gaagaagaag aagaagaagc agaagcagca gtagaagaag
      421 aagaaggaga agaagaagca gcatgtatag agtacgaagc ggcagaaaac accattgcca
      481 ttaactgcaa cgcttctttt ctagatgttg tccgggccat aaatgatcct gagatacttg
      541 agcaagagga tgatggccaa tacattctaa acgctaactt ggaagtgggt gatggtataa
      601 cctttaaaat gaattcaagt ggtgataatt tacaatacct aaagatttct ggcgaaaatg
      661 ggataatagt tcagggaaga atagagataa gtggcataaa aataacatca tgggatactg
      721 aaactgattc gccaatctct cagacagaga cgggatcagt tccaagaaca tttatcaatt
      781 tgcgagttag tgagggcgga tttattgaaa attcagaggt tgcacatata ggatacgatg
      841 caccccctag acggggaatc gatttaggag aagcaggaga aggcccgtca catgattttg
      901 caataagaaa ctcaacaatt catgacaact ggatgggatt ctattctgca ggcgcctaca
      961 atattacact tgatggtaac gagttcttca acaatatctt gtatgctata gatcctcata
     1021 ctgctacaca taacatgaca gtatcaaaca acaaaataca caacaaccaa ggcattgccg
     1081 ttatatgttc attggattgc tataatatta tatacgaaca aaatgaagta tacaataatg
     1141 tcgaatcagg cctgatgttc tctcgagcta cacatgattc aatcataaga aacaacttga
     1201 tatacaatca atacggatct gcatatccaa tctcgatttt tgaatctcgc aacaatgaaa
     1261 tctatggtaa tatcatacgt aattccacaa ctggaatatc agtacataat cctctggaat
     1321 tagatga
//
LOCUS       DATLQL010000718         1007 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_349744, whole genome shotgun sequence.
ACCESSION   DATLQL010000718 DATLQL010000000
VERSION     DATLQL010000718.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1007)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1007)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1007
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_349744"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..303
                     /locus_tag="VNB68_07175"
     CDS             <1..303
                     /locus_tag="VNB68_07175"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HVD37165.1"
                     /translation="NLEGDSMTPSARDFSYPSNHVACITAFSYLIGYSLSRGLGNAKH
                     LIWFLPFAVGLSQLILRQYYFSDMIGGFLFGLIFAILMSNILHIEMPFSRDRFKIN"
     gene            complement(328..666)
                     /locus_tag="VNB68_07180"
     CDS             complement(328..666)
                     /locus_tag="VNB68_07180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37166.1"
                     /translation="MNSILLSKLSVYSTTEVKEMSDVHKVAVDIVKAYVDLNPKRKFS
                     YRILLPRKGDSSNSLARKLGLAVQGEILLTMKKHRLKPSLKEIRYLHDDAHYGWLLMD
                     ADFMDDVIKD"
     gene            846..>1007
                     /locus_tag="VNB68_07185"
     CDS             846..>1007
                     /locus_tag="VNB68_07185"
                     /inference="COORDINATES: protein motif:HMM:NF014916.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37167.1"
                     /translation="MESALLVNRHRWKTLEHRGVAFPPEHVQRGIGITVFGERFLLNR
                     DQEELIYAWA"
BASE COUNT          286 a          198 c          186 g          337 t
ORIGIN      
        1 aacctggagg gcgacagcat gacgccctct gctcgggatt tttcctatcc ttcaaatcat
       61 gttgcctgta taaccgcatt ctcttatttg attggttatt cactttctag gggccttggt
      121 aatgccaaac acttgatatg gtttcttcca tttgccgttg gtctttcgca attgatctta
      181 agacaatatt acttcagtga tatgataggg ggttttctct ttggtctaat ttttgcaatt
      241 ctcatgagca acatattgca tattgaaatg cccttttccc gagatagatt taagataaat
      301 tgactgcaaa gaatttcaca aatttcgcta gtccttgatt acatcatcca taaagtctgc
      361 atccattaat aaccaaccgt aatgtgcatc gtcatgaagg tacctgattt ccttaagaga
      421 cggtttcaat ctatgtttct tcatggttag aagaatttcg ccttgcactg ctaaaccaag
      481 ttttctagca agcgaatttg aagagtctcc ctttctcggt agcaagatcc tgtaactgaa
      541 ctttcttttt ggattcaaat caacatatgc tttaacgatg tccactgcca ccttatgaac
      601 gtcagacatt tcttttactt ctgttgttga atagacgcta agttttgaga ggagtattga
      661 attcatgcat acacttaccc taaactcaaa ttccttagat tcctaaaagg ttattgaaat
      721 acaatgctac cattgcttat ataaaatact ggcagtagaa taaataaatt gttccattaa
      781 tctctagcat taatcgcgat aggtaaagtt tatcaatagt taccatggca caagcggtat
      841 atttaatgga atctgcattg cttgttaacc gacatcgatg gaaaacgctt gagcacagag
      901 gggtagcgtt tcctcccgaa cacgttcaaa ggggaatcgg tataacagta tttggtgaaa
      961 ggtttctgct taatcgtgat caagaggaat taatttatgc ctgggca
//
LOCUS       DATLQL010000719         1439 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_884509, whole genome shotgun sequence.
ACCESSION   DATLQL010000719 DATLQL010000000
VERSION     DATLQL010000719.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1439)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1439)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1439
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_884509"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1105
                     /locus_tag="VNB68_07190"
     CDS             <1..1105
                     /locus_tag="VNB68_07190"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HVD37168.1"
                     /translation="KNEILGLFSTSNGFHRQERAGSLSLAEEVSKSQGIQVRILTPFD
                     DKIRQLEQNLEKERGFDIRDIEEGSRTRVSILIVDRRSSLVVELNDDAKESSLEAIGT
                     ATYSNGEAMVNTYASFFESLWKQSELYKKVKTHDSLQNEFISLAAHELRTPIQPILAL
                     SQHLLSQESALDAKQRKEYLEIIVRNAIRLQQLTEDILDITKIERRSLQLKLEQINFN
                     EIVLSSIQDANGSLDNKSKVKINCHFSEDETNLVMVDRQRLSQVMTNLLNNSIKYTSE
                     GKIDVFIERSKEGSRANDQFVIIRVRDTGVGIDPQMMDKLFSKFGTKSETGTGLGLFI
                     SKGIVEAHGGHIWAENNVDGIGACFAFRLPLSH"
BASE COUNT          500 a          260 c          308 g          371 t
ORIGIN      
        1 gaagaacgag atcttgggac tgttttcaac gtcaaatggt ttccacagac aggagcgtgc
       61 tggttcactt tctttggccg aagaagtttc gaagtcgcaa ggaatacagg taaggattct
      121 gactccattt gatgacaaaa taagacagct agaacaaaac ctggaaaaag aaagagggtt
      181 tgacattaga gacatagaag agggatcgcg aacaagagta tctatcttaa tagtagacag
      241 gaggtcttca ctcgtagtcg agctcaatga cgacgcgaag gaaagttctt tggaggctat
      301 cggcacagca acatattcca acggcgaggc aatggttaac acatatgctt cgttttttga
      361 gagcttgtgg aaacagagcg agttgtacaa aaaagtgaaa acccacgaca gtttgcaaaa
      421 tgaattcatt agcttggctg cccacgaatt gagaactcca attcaaccta tactcgcact
      481 ctcgcaacat ttgctttctc aagaatctgc attagatgca aagcagagaa aggaatacct
      541 tgagatcata gttaggaatg ctattcgtct acagcagctt accgaagaca tattagatat
      601 tacaaaaatc gaaagacgtt cgttacagtt gaaattggag caaatcaact ttaatgaaat
      661 tgtacttagt tccatacagg atgccaatgg cagtcttgat aataaaagta aagtaaaaat
      721 caattgtcat ttctctgaag atgaaactaa cctcgtaatg gtagatcgcc aacgcctgag
      781 tcaagttatg accaacctct taaacaattc aatcaagtac acatctgaag ggaagataga
      841 tgtatttata gagcgttcta aagagggctc tcgggcaaac gatcaattcg taataatacg
      901 ggtaagggac acaggtgttg gaatcgatcc acaaatgatg gataaattat tttcaaaatt
      961 cggtacaaaa tcagaaacag gaacgggact gggccttttt atctctaaag gcatagttga
     1021 ggcccacggg ggacatatat gggctgaaaa caatgtcgat ggcataggtg catgtttcgc
     1081 attcaggctc ccgctttccc attaatacaa aaatagattc aagagttaca gcaagtaaca
     1141 tagcctcaca gacataagat ctctagctta tatatcacaa gttttatcta tctttacaat
     1201 ccaagtttta ctatattcta tattgcagat atccaaagga caaatgataa aaaatatggc
     1261 agatagcagg ttaatactag gggcacgaag gtgccgtaaa gataaaggta ctcgagattt
     1321 agaacagatc atgtcttttt gcccaagctt gatcataaat gggagatcag gagagtgatt
     1381 taatttaatt tgaactctac accagacgag gaaataaaat tttcagatcg ctcggagaa
//
LOCUS       DATLQL010000720         1514 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2656544, whole genome shotgun sequence.
ACCESSION   DATLQL010000720 DATLQL010000000
VERSION     DATLQL010000720.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1514)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1514)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1514
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2656544"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..480
                     /locus_tag="VNB68_07195"
     CDS             <1..480
                     /locus_tag="VNB68_07195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chlorite dismutase family protein"
                     /protein_id="HVD37169.1"
                     /translation="MQVLTSKIYLTVFGKYIESSRVYLASYRQSIYSKNTKMTPGYLL
                     EEDIKENEPMKYVIVYPFTKSREWYLLPFEDRMKMMDEHITVGRKFPQVRLNTSYSFG
                     IGDQDFMLAFETNNLMVFQDLIVQLRETRVSSYVVKDTPMIVGIYKGGVEEFIKTLG"
     gene            473..1312
                     /locus_tag="VNB68_07200"
     CDS             473..1312
                     /locus_tag="VNB68_07200"
                     /inference="COORDINATES: protein motif:HMM:NF020398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1802 family protein"
                     /protein_id="HVD37170.1"
                     /translation="MDSSTYDAGPSFNPNFYRVQSTTNRRTTETRNTNLDKSKIPFLN
                     TLAEHSQPVPHSVQDLNSNTPVITAALKEWAVVCKALEDGRQVLLLRKGGVLEYRQGF
                     QVRHSNFFLYPTFEHQSSESIQADFIEKFEMIMHEQPSKGKNTITSYARAVTVKQIKD
                     VSLLPSLQKYHIWNDSYVNLRMNYNPKKPLSVVLLRVYRIDPIEVDVKSEWLGCKSWI
                     PIESIPSQSQSKNHLDEQNKANPEHRSSYGNYFNNIRSNEHPVIEDLKFKRIVDELEE
                     ILK"
     gene            1317..>1514
                     /locus_tag="VNB68_07205"
     CDS             1317..>1514
                     /locus_tag="VNB68_07205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HVD37171.1"
                     /translation="MKYRKLGKSGIRVSEIGFGAWTIGMDWWNKKIDDDEAIRMLKKA
                     YDLGINFYETADVYGKGKSERL"
BASE COUNT          527 a          270 c          316 g          401 t
ORIGIN      
        1 atgcaagtat tgacatcaaa aatctatctc acggtttttg ggaaatatat agagtcttcg
       61 agggtatacc tcgcttccta ccgtcagtcc atttactcaa agaatacaaa aatgacacct
      121 ggatatctct tagaagaaga cataaaagag aatgaaccaa tgaaatatgt tatagtttac
      181 ccattcacaa aatcaagaga gtggtatttg cttccctttg aagacagaat gaaaatgatg
      241 gatgaacata taacagttgg aagaaagttc cctcaggtaa gactgaatac atcatactca
      301 tttggtattg gggatcagga tttcatgcta gcttttgaaa caaataattt aatggtcttt
      361 caggacctaa ttgtccaatt acgcgaaacg cgtgttagta gttatgtagt taaagatacc
      421 ccaatgatag ttggcattta taagggtggc gtggaggagt ttatcaagac ccttggatag
      481 ttcaacttat gacgctgggc cttctttcaa tcctaatttc taccgggtcc aatctaccac
      541 aaataggcgc accacggaaa ctaggaacac taacttagac aagagtaaaa ttccgtttct
      601 taacacatta gcagaacatt cacagcctgt tccccattca gttcaagact tgaattctaa
      661 caccccagta ataactgcag cactcaaaga atgggcagtt gtttgcaagg cgcttgagga
      721 cggtagacag gtattgctgt tgagaaaagg cggggtcttg gaatacagac aaggatttca
      781 ggtaagacac agtaactttt tcctttaccc tacttttgag catcagtcaa gtgaatccat
      841 acaggccgac ttcattgaga aatttgaaat gataatgcat gaacagccct caaaggggaa
      901 aaatacaatc acttcttatg cccgtgcagt aacggtgaaa caaataaagg acgtatcact
      961 attgcctagc cttcagaaat atcatatttg gaacgacagt tacgttaatc taagaatgaa
     1021 ttataatcca aagaaaccct taagtgtagt attgcttagg gtttacagaa tagacccaat
     1081 cgaagtagat gttaaatcgg aatggcttgg atgtaagtca tggattccta ttgaatccat
     1141 tccatctcaa tcgcaatcaa aaaatcacct cgatgaacaa aataaggcaa atccggaaca
     1201 tcggagcagt tatggtaatt attttaataa cattcgcagc aatgaacacc ccgttataga
     1261 ggatttaaaa ttcaaaagga ttgtagatga attagaggag atcctgaaat agcattatga
     1321 aatacaggaa attaggaaag agcggaatac gtgttagtga aatcggattc ggagcatgga
     1381 ccatcggtat ggattggtgg aataaaaaaa ttgatgatga cgaagcaata aggatgctaa
     1441 aaaaggctta cgacctcggc atcaattttt acgaaacagc agacgtttac gggaagggaa
     1501 agagcgagag gtta
//
LOCUS       DATLQL010000721         1020 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1220162, whole genome shotgun sequence.
ACCESSION   DATLQL010000721 DATLQL010000000
VERSION     DATLQL010000721.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1020)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1020)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1020
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1220162"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(2..328)
                     /locus_tag="VNB68_07210"
     CDS             complement(2..328)
                     /locus_tag="VNB68_07210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37172.1"
                     /translation="MSSVESIVSALSELESDINNLSSKVDEMKKSLMVHSEQEISNIR
                     ERVIEIAKEEAGKIMNISKEEAEKESAKILEEADQNLTKVRINIESSFNKCVEIVLKS
                     VFTGKA"
     gene            complement(618..932)
                     /locus_tag="VNB68_07215"
     CDS             complement(618..932)
                     /locus_tag="VNB68_07215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nascent polypeptide-associated complex protein"
                     /protein_id="HVD37173.1"
                     /translation="MRRMLDKMGLEMKDLGNVEEVIIRTENKEFYLPKPQVIEMKGKD
                     STIFQIVATSVEESQRETPSIKEEDVILVMQQASVSKEKALIALTESKGDIAQAILGL
                     TT"
BASE COUNT          261 a          229 c          155 g          375 t
ORIGIN      
        1 gttatgcttt gcctgtaaag actgatttta gcacaatttc aacgcacttg ttaaacgacg
       61 actcgatgtt aattctgact ttagtcaagt tttgatcagc ttcttccaaa attttagcag
      121 attccttctc agcttcttcc tttgagatat tcattatttt ccccgcttct tctttagcga
      181 tttcaattac tctctctcga atgttggaga tttcctgttc agagtgaacc atgaggctct
      241 tcttcatttc gtccactttt gatgaaagat tattaatgtc cgactccagc tctgaaagag
      301 cacttactat actttccacc gatgacattt atcccgttcg aatgaattat tcaaagtata
      361 tattaattga ttggttctcc aaatgaattc tagaaaaata acactcgtac acctagtaaa
      421 ccaaaaaagc gcagtaagca gtattttctc aactactagt gccttgtagt ctgattttag
      481 acaggttccg atcgagcaga agcgcaataa ttaattatat ttagcaactt atgcgaatcg
      541 ttgatcagca actcttttga gtttgtaaca tatggaataa ccttcagata tccagttcta
      601 ttgctcatgt ctgatgatta tgtcgtgagg cccaatatcg cctgagctat gtctcccttg
      661 gactctgtca aagcaattag tgccttctcc tttgatactg aggcctgttg cattactagt
      721 atgacatctt cttctttgat tgatggcgtt tccctctgag attcttctac actcgttgca
      781 actatctgaa aaattgtact atcttttccc ttcatttcga taacctgagg tttaggtagg
      841 tagaactctt tattttcagt tctaattatt acttcttcta cattccccaa atccttcatt
      901 tcaagcccca ttttgtccaa catacgcctc atgtcacggt tgcctgatcg catcatttca
      961 actcattcat tgatagctct actttttaat ccttttctga ttttaattgc aatgcccctc
//
LOCUS       DATLQL010000722         1821 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1768413, whole genome shotgun sequence.
ACCESSION   DATLQL010000722 DATLQL010000000
VERSION     DATLQL010000722.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1821)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1821)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1821
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1768413"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..194
                     /locus_tag="VNB68_07220"
     CDS             <1..194
                     /locus_tag="VNB68_07220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37174.1"
                     /translation="SGLLDLQLLEQDKYRWNDWDCTRVLEDKGQLDKKSSSFQSLFSC
                     YKIDQHLSSSVLPVFFLLS"
     gene            344..1369
                     /gene="mtnA"
                     /locus_tag="VNB68_07225"
     CDS             344..1369
                     /gene="mtnA"
                     /locus_tag="VNB68_07225"
                     /EC_number="5.3.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046523 -
                     S-methyl-5-thioribose-1-phosphate isomerase activity
                     [Evidence IEA];
                     GO_process: GO:0019509 - L-methionine salvage from
                     methylthioadenosine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S-methyl-5-thioribose-1-phosphate isomerase"
                     /protein_id="HVD37175.1"
                     /translation="MITVSWKDDSVVLIDQTKLPNRLAYVQCRNYNEVADAIKEMVVR
                     GAPAIGVTAALGLALAGLKSKATTPNELRADLDKAFTVLFSTRPTAVNLSWALTRVIK
                     RAIHKKSMAQIKKALLEEALTLAKEDAEINLKIGMNGAQLFSDGDVVMTHCNAGSLAT
                     TTYGTALGVIRAATQKGKRLSVIATETRPVMQGSRLTAFELQHDGIDVSLIPDTAVGY
                     MMSKGIIGRVIVGADRILRTGHVFNKIGTYQIASMANLHGIPFYVAAPISTFDFEGTL
                     QGIVIEDRSADELVKVGTKRIAPIGVRIFNPAFDITPPDLISAIVTEKGVLTPPYEKS
                     VNFILDK"
     gene            1548..>1821
                     /locus_tag="VNB68_07230"
     CDS             1548..>1821
                     /locus_tag="VNB68_07230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly protein"
                     /protein_id="HVD37176.1"
                     /translation="MSLKTITEEEVYSALRKCMDPEIPVNVVELGLIYGVKVKPENNI
                     DIKMTMTTRGCPLHDTLVSDIKRHVGKINGIGIIDVEIVWDPPWSIE"
BASE COUNT          570 a          325 c          396 g          530 t
ORIGIN      
        1 attcaggtct actagatttg cagttattgg agcaggataa atatagatgg aatgactggg
       61 actgcaccag agttttagag gacaaaggcc aactagacaa gaaatcatca tcatttcaat
      121 cactctttag ttgctataaa attgaccaac acttaagcag cagtgtacta cctgtcttct
      181 ttttgctttc ataaccgtat gattaaactt tctgtattat tacatattcc ctgtttagta
      241 atattttgcg gtagcttttc agtttagtta actttaatac acttgaatca atttttaatt
      301 tgtattgaat tataataata attatgataa tcgcttcgat tctttgatta ctgttagttg
      361 gaaggatgat tctgtggtcc ttattgatca aactaaatta ccaaacagac ttgcatacgt
      421 acaatgcagg aattacaacg aagtagcaga tgcaataaaa gagatggtag taagaggtgc
      481 tcctgcgatt ggtgtaacgg ctgcactagg attagcactt gctggtctta aaagcaaagc
      541 tacaactcct aatgaactac gagcagatct tgataaagcg tttacagtct tattctcgac
      601 aaggccaacg gcagtcaatc tatcctgggc actaacccga gtaataaaaa gggcaattca
      661 caagaagagc atggcccaaa ttaagaaagc acttttagag gaagctctga cactagccaa
      721 ggaagatgcg gaaattaatt taaagatagg catgaacggt gcgcaacttt tcagtgatgg
      781 tgacgtagta atgactcatt gtaatgcggg ttcactagcg acgactacct atggaacagc
      841 tctgggagtt atccgagcgg caacgcaaaa aggcaagcgg ttaagcgtaa tagcaaccga
      901 aacacgccct gtaatgcagg gttctagatt aactgcattt gaacttcagc atgatggtat
      961 tgatgttagt ctaatcccgg atactgcagt aggatatatg atgtccaagg gcattatagg
     1021 gcgtgtgatt gtaggtgcag accggatttt acgaactgga catgtattca ataagatcgg
     1081 aacatatcag atagcaagta tggccaattt gcatggcatt cctttttatg tagccgcacc
     1141 gatatctaca tttgattttg aaggcactct tcaaggaatt gtgattgaag atagatccgc
     1201 agatgagcta gtaaaggtcg gaacgaagag gattgcacca atcggtgtcc gaatatttaa
     1261 cccggccttt gatataactc ctcctgattt gattagtgct atagtcactg aaaagggagt
     1321 gcttactcca ccttacgaga agagtgtcaa ttttatttta gataaatgat ttgctcacta
     1381 ctaattaaga agcagagatg gggcagcacc attgtcaatt tatcataatc tattaacaag
     1441 cctacttagt gcgcctaata ggtccattga ttatcatcgt ttaacggtag catcgaagtg
     1501 tgataaagtt tttatcatgt agaggtccat ttacgtgcag attccaaatg tctctgaaaa
     1561 ctatcactga agaagaagtt tattcggctt tgagaaaatg tatggatccc gaaatacctg
     1621 ttaatgtggt ggaactcggg ctgatatatg gcgtcaaggt taagcctgaa aataacatcg
     1681 atatcaaaat gaccatgact acgcggggtt gtcctcttca cgatacattg gttagcgaca
     1741 taaagaggca cgtcggaaaa attaatggta tcggaattat tgacgtcgaa attgtttggg
     1801 accccccttg gagtattgaa a
//
LOCUS       DATLQL010000723         1144 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1948234, whole genome shotgun sequence.
ACCESSION   DATLQL010000723 DATLQL010000000
VERSION     DATLQL010000723.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1144)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1144)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1144
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1948234"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            447..>1144
                     /locus_tag="VNB68_07235"
     CDS             447..>1144
                     /locus_tag="VNB68_07235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37177.1"
                     /translation="MTLSPEPGIVIISDLGLSDDERVIDICNRTFAKTKASKWQVRWV
                     DHHPWSKKALESLKPFIDIVLDESGKKCAADLMYETFLRGNELAATLARLAHTMDFFT
                     NDQYLTPTSELIHYYRTFSDFYRRLTILAQKAAHGILWDVEMQEQYNKYAVLRNDAKK
                     QILSTIIVKEVNALNVAFVPTSPYIHTSIFSAEVFQKTHADIAIFYSTEGKVSIRRNN
                     ESVHCNKIAANLNEG"
BASE COUNT          368 a          209 c          231 g          336 t
ORIGIN      
        1 agaaaagatc ttaagtgtta ggacaaactg gaggtttact caattcatat ttccgaagaa
       61 ttagatatct gatgtattgc tggagtatat ttatcagata gttgttgctc tgattaatta
      121 tagagctaga tcttgctatg aaattttgga ccggaccgcg ctgtatctga gcatacgatt
      181 tataatagcg tacagcatag gcttcttaaa gatcgatttc ctatacgtga tgtaatatga
      241 aagaatttct aaaggaacaa cacctgctcc ggaattgcta aagcaggtgc agataaataa
      301 aagctataat actatcacat gaatcagacc ttgatggaat attctctgca gctatcgggt
      361 taatacgatt tcctcaagca cgtactatct tccttggata tggaattgaa aattttacca
      421 aactggcaaa ctttattgat tccgtaatga cactgtcacc cgagcctggt atagtaatta
      481 tttcagattt gggactttct gatgatgaac gagtgattga tatttgcaat aggacatttg
      541 caaagaccaa agcaagcaaa tggcaagtaa gatgggttga tcaccatccc tggtcaaaga
      601 aggctctgga gtcacttaaa ccttttatag acattgtact tgatgagtca ggcaaaaaat
      661 gtgcagctga cctaatgtat gaaacatttc ttcgcggaaa tgagctcgca gccacacttg
      721 ctaggctcgc ccatacaatg gattttttta caaacgatca atatctaaca cctacttctg
      781 agcttatcca ttactatcgg actttttcgg atttctaccg caggctgact attctagcac
      841 aaaaagctgc tcatggaata ttgtgggatg tggaaatgca agaacaatat aataaatatg
      901 ctgtactgcg taacgatgcg aagaagcaga tcctttccac aattatagtt aaagaggtta
      961 atgccctaaa tgtagccttt gtgccaactt cgccgtacat acataccagt atcttctcgg
     1021 cagaggtatt tcaaaagaca catgcggata tcgccatttt ttatagtact gaagggaaag
     1081 tgagtattag aaggaacaat gaaagcgtac attgcaataa gattgccgct aacttgaatg
     1141 aagg
//
LOCUS       DATLQL010000724         1231 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1060584, whole genome shotgun sequence.
ACCESSION   DATLQL010000724 DATLQL010000000
VERSION     DATLQL010000724.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1231)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1231)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1231
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1060584"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(54..374)
                     /locus_tag="VNB68_07240"
     CDS             complement(54..374)
                     /locus_tag="VNB68_07240"
                     /inference="COORDINATES: protein motif:HMM:TIGR00231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HVD37178.1"
                     /translation="MELRQPVVVVLGHVDSGKTSLLDKIRGTAVQSREEGGITQHIGA
                     SYFPIETIKEITGKLFDKLSKSENPVPGLLVIDTPGHEVFANLRMRGGSAADIAIVVV
                     DVNK"
     gene            complement(375..782)
                     /gene="ndk"
                     /locus_tag="VNB68_07245"
     CDS             complement(375..782)
                     /gene="ndk"
                     /locus_tag="VNB68_07245"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004550 - nucleoside diphosphate kinase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HVD37179.1"
                     /translation="MSDLEQTLIVVKPDGFKRGLVGKIISRFEEKGFQIVNLKSFQFD
                     TDTARKFYDAHKDKHFFNELVSFICSGKTVGCILEGNNAISTVRLMVGNTKSTEAQPG
                     TIRGDFGLGFTDNIIHASDSAESFIKESKIIFS"
     gene            complement(793..1002)
                     /locus_tag="VNB68_07250"
     CDS             complement(793..1002)
                     /locus_tag="VNB68_07250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24e"
                     /protein_id="HVD37180.1"
                     /translation="MSKAAASLRNCFFCGKHIPTDAGTMSVKNDGSIQWTCSPKCKKN
                     MKLKRDPRKLKWTRKYVKGGIKVKK"
     gene            complement(1012..>1231)
                     /locus_tag="VNB68_07255"
     CDS             complement(1012..>1231)
                     /locus_tag="VNB68_07255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018193263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="30S ribosomal protein S28e"
                     /protein_id="HVD37181.1"
                     /translation="LVSKAAEVRVTPAEVIQIVGRTGIAGEVIQVRVKVLEGKDKGRI
                     LTRNVKGSVRMKDILMLRETEREARKIK"
BASE COUNT          313 a          291 c          196 g          431 t
ORIGIN      
        1 gggacctttc tcttttttaa tatatccaaa ctttcaatcg tttgcgcctc aagtcatttg
       61 ttaacatcaa ctactactat ggcaatatcc gctgctgacc cacccctcat gcggagattt
      121 gcaaagactt catgaccggg agtatctatc acgagtagcc ctggaacggg attttctgat
      181 ttggacagct tgtcaaataa ctttcctgta atctctttga ttgtttctat cgggaaataa
      241 cttgcaccta tgtgttgcgt tattcctccc tcttctctgg attgtacagc cgttccacga
      301 attttgtcaa gtaaggaggt tttaccggag tctacatgac ctaatacaac tacaacaggt
      361 tggcgaagtt ccacttaact aaaaatgatt ttagactctt ttatgaagct ttcagccgaa
      421 tcggaggcat gtattatatt atcagtaaat ccaagtccaa aatcacccct gattgtcccc
      481 ggttgggctt ctgttgactt ggtgtttcca accattagcc ttactgttga aattgcattg
      541 tttccttcta aaatacagcc gactgtttta ccagaacata tgaatgaaac tagctcgttg
      601 aaaaaatgct tgtctttatg agcatcgtag aatttgcgtg ccgtatctgt atcaaactga
      661 aacgacttga gattcactat ctgaaaaccc ttctcttcaa atctggaaat aatttttcca
      721 acaagacccc tcttgaagcc atcaggtttt accacaatga gagtttgctc taaatcagac
      781 atttcctagc tcttattttt tgaccttaat tccaccctta acgtactttc gagtccattt
      841 cagttttctt ggatcccgtt tcaatttcat gttcttttta catttaggtg aacatgtcca
      901 ctgaatagaa ccatcatttt ttactgacat cgttcctgca tcagtaggaa tatgttttcc
      961 acaaaagaaa caatttcgga gagacgctgc tgctttactc aaacaatatc actactttat
     1021 ctttcttgcc tctctttcag tttctctcaa catcaggatg tctttcatcc taactgagcc
     1081 tttaacattt cttgtgagaa ttcgaccctt gtcctttcct tctagaacct ttactcttac
     1141 ttggattact tctcctgcta tgccggttct gcccactatt tgaataactt ctgctggagt
     1201 tacccttact tctgcagctt tactcactag t
//
LOCUS       DATLQL010000725         1191 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_171880, whole genome shotgun sequence.
ACCESSION   DATLQL010000725 DATLQL010000000
VERSION     DATLQL010000725.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1191)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1191)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1191
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_171880"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..228)
                     /locus_tag="VNB68_07260"
     CDS             complement(<1..228)
                     /locus_tag="VNB68_07260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37182.1"
                     /translation="MDFDRNNRISLSIIISFIFVIVGLQGSVTGYTGEEIVIMLSSAH
                     FAPVAGTDNYQVKVVVNYSVSDPILVGHKINA"
     gene            complement(367..699)
                     /locus_tag="VNB68_07265"
     CDS             complement(367..699)
                     /locus_tag="VNB68_07265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37183.1"
                     /translation="MKYHISSQPFQCSFFLVAALISAGIIGSGLVLSTVATIAYGVSS
                     SSGQDSGLLATVQDVSIIGIKKDKSFDPNPIEINAGDSITWTNDDNEIHTVTSGSVEG
                     PSIGTEFD"
BASE COUNT          382 a          211 c          242 g          356 t
ORIGIN      
        1 agcgttaatc ttgtgtccaa cgagtatagg gtcggacaca gagtagttaa caactacttt
       61 gacttgataa ttatcagttc cagctactgg agcaaaatgt gcactgctta acattataac
      121 aatttcctct cctgtgtagc ctgttacaga tccttgtagt ccaacgataa caaagatgaa
      181 actaattatg atggatagag aaattctgtt atttctatca aaatccattt tttctcgcct
      241 acgatttatc atggcttatc ctacgatcac ttttccagtc attgaatcgt gaaaagagca
      301 aaagtattcg taagttccag gtttatcaaa ctgatgggtg aaggattgtc cggaagccat
      361 agtactttaa tcaaattccg ttcctatact aggtccttca acactacctg atgtaacggt
      421 atgaatttca ttgtcatcat tggtccaggt aattgaatcg cctgcattga tctcaatggg
      481 attcggatca aatgatttgt ctttctttat accgattata gatacatctt gtacagtggc
      541 taataaccca gagtcttggc cagacgatga ggagacgcca tacgcgattg tggcgacagt
      601 tgatagaact agcccgctgc cgatgattcc tgcagaaatc agagcggcaa ctagaaaaaa
      661 cgagcattga aatggttggc tactaatatg gtatttcata gcaatcctat ttctcgttgg
      721 ctattgagat ttatgcccgg aggtgaccta tgttagacta aagattaaaa accttataac
      781 cctggaatcg agagaaaacc cagttattgg gctattaacg tagattatga acaatctcag
      841 tacatctaga taataatttt taggattaaa gaagatatga agggcacccg ttaataggaa
      901 atagataggt gcacgatgat tcaaatgaag caaggaagta aagcaaggaa gtaaagcaga
      961 tattattccc gtgctcctag atgttgcgaa ggacggaatc accaaaactc atctcatgta
     1021 tatgaaggct tattgtcatt tgttcgaatg cgagagtatc tttgcatgtt gttagaaaag
     1081 ttctgattcg gcattaatac gggaaaatat agaacaaccg aaagaggatt gcaaatgatt
     1141 tttatttgca atcaattaaa tgaagaaatc tttttttaga atggccctga a
//
LOCUS       DATLQL010000726         1914 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_171902, whole genome shotgun sequence.
ACCESSION   DATLQL010000726 DATLQL010000000
VERSION     DATLQL010000726.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1914)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1914)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1914
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_171902"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1848
                     /locus_tag="VNB68_07270"
     CDS             <1..1848
                     /locus_tag="VNB68_07270"
                     /inference="COORDINATES: protein motif:HMM:NF012377.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cellulase family glycosylhydrolase"
                     /protein_id="HVD37184.1"
                     /translation="MTAIALAVSGIQIIMAGVRGRRKALSQRHGAEALTRGSVVEQES
                     SAEGRKGIWKSGSWFRDEEKRYVLFRGVNFGSRSKMPPYLPIAPLDVHDISKLDLKKE
                     IESVKLGLDLLKNLGFNIVRLLISWKAIEPRPNPNLEELLPEGKKYLEYMKEIIDELH
                     ARKLYVILDFHQDIANEVYGGDGFPDWAIAIDEEHEKPKPPTKPDKKWQFKYMINKSL
                     KETLKSFWENDLTNLDEGFKNYPVRTHLEKTIGQTVKFFKSLNDGLGHPAILAVEPFN
                     EPHPSTIPKKDFEVKFLVDYYRNVNSEIEKFDKALFIFIEPRVDWIMPTDTGGMPVKY
                     GAAPLEIKRSFGMDFIKNVMVDKKLVTKKLETYLPSDLNSVSRFGNNGVLSFHYYDTM
                     AVASSFVKIPESLYTYKIEFPMIFIQLVHAATERGLIPFITEFGAFQEAEQIREYLDL
                     QYNQIEAFLLNATIWNYDLYNTEEGKDNWNYENYSLLGPDRKPRNVDAVARPYPMRSS
                     AEPTLIFFDIDSKYASIVLEGKVVTEEPTVVYIPFDIHYSPEFTVWSTSNELKWDRMN
                     NLLHWYPSKDQDYNQLVIGKGKLIKLETKFLPEQSKELASKTLFTSTFG"
BASE COUNT          642 a          335 c          393 g          544 t
ORIGIN      
        1 atgaccgcaa tagccctagc tgtaagtgga atacaaataa taatggcagg agtcaggggc
       61 aggcgtaagg cactttcaca aagacatgga gccgaagctc taacaagagg gtctgtggtc
      121 gaacaagaat cttctgcaga aggtagaaaa ggaatttgga agagcggatc ctggttcagg
      181 gatgaagaga aaagatatgt tctatttagg ggagtgaact ttgggtcaag aagtaaaatg
      241 cctccttatc ttccaatagc acctcttgac gttcacgaca tatccaaact tgatttgaag
      301 aaggaaatcg aatcggtaaa attaggattg gatcttttga aaaaccttgg gtttaatatt
      361 gtacgtctct taatttcatg gaaagctata gaaccccgcc caaacccaaa tctagaagag
      421 ttactgccag agggaaagaa atatcttgaa tacatgaagg aaataattga tgagctgcat
      481 gcaagaaagc tttacgtaat tttagatttc catcaggata ttgcaaatga agtttatggt
      541 ggtgatgggt tccctgattg ggccattgcg attgatgaag agcatgaaaa gccaaagccc
      601 cctaccaagc ctgacaaaaa gtggcaattt aaatatatga ttaacaagtc cctaaaagag
      661 accttgaaat cgttctggga gaatgatttg acaaacttag atgagggttt taaaaactat
      721 cctgttcgca cacatttaga gaaaactatt gggcagactg ttaaattctt caaatcatta
      781 aatgatggtc ttggacatcc agccatcttg gctgttgaac cctttaatga accacatcct
      841 agtactatac ccaaaaaaga ttttgaagtc aagtttcttg tggactatta tcgcaatgta
      901 aactctgaaa ttgaaaagtt tgacaaggcc ctctttatat ttattgaacc aagagttgat
      961 tggattatgc ctactgatac cggcggtatg cccgtaaaat atggagcagc ccctcttgag
     1021 ataaagagat catttggtat ggactttata aaaaatgtaa tggtagataa gaaactcgta
     1081 acaaagaaat tggaaaccta tctgccaagt gatctaaact ctgtttccag atttggtaat
     1141 aacggtgtcc tgtcttttca ttactatgat acaatggctg ttgccagctc atttgtaaaa
     1201 atccctgaaa gtctttacac ttataaaatc gaatttccca tgatttttat tcaattagtt
     1261 cacgctgcca ctgaacgtgg acttattccg tttataacag aatttggggc attccaagag
     1321 gcagagcaga ttagagaata tttggatcta caatataatc aaatagaagc gtttctcctt
     1381 aatgctacta tatggaacta cgatctatac aataccgaag agggcaagga taattggaat
     1441 tatgaaaact attcacttct tggacctgac agaaaaccac gaaatgtaga tgcagttgca
     1501 cgcccatacc cgatgcgaag ctcagcagaa cctactctaa tattttttga tatagattca
     1561 aagtatgctt cgattgtcct agaggggaaa gttgtgacgg aggagccgac ggtggtctac
     1621 attccttttg acatacatta ctcccctgaa tttacagtgt ggtctactag taatgaattg
     1681 aaatgggata ggatgaacaa tcttttacac tggtatcctt caaaggatca agattataat
     1741 cagttagtaa taggaaaggg taaacttatc aaactggaaa ctaaattctt acctgaacaa
     1801 tcaaaagaat tagctagcaa gacattattc accagtactt ttggataaac tggttaagaa
     1861 acagtgggtc atttagaatt ttcttaactt ttcaggtcgc tcactgaaat aaga
//
LOCUS       DATLQL010000727         1112 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_886173, whole genome shotgun sequence.
ACCESSION   DATLQL010000727 DATLQL010000000
VERSION     DATLQL010000727.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1112)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1112)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1112
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_886173"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(674..>1112)
                     /locus_tag="VNB68_07275"
     CDS             complement(674..>1112)
                     /locus_tag="VNB68_07275"
                     /inference="COORDINATES: protein motif:HMM:NF014582.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ZIP family metal transporter"
                     /protein_id="HVD37185.1"
                     /translation="RKGGGAGILLGIGLDSIPESLAIGASIAGGTGLVLALLIGIQNV
                     PEGIASYREMISGKTTAFGGNKIKGLIAIGFVSVLPIVLGLIGLFFVQGMQVVIALTL
                     AISAGGIFYMLFYDMIPKAHKERKWLPTFGAVLGFIIGFALLG"
BASE COUNT          339 a          228 c          207 g          338 t
ORIGIN      
        1 cagtaccaaa gactaaattc aaggatgttt gactatatca acacatcaag ctctgttgat
       61 agacttggct ttgaagtctg gtgcagagtt gcagtttagc ctattacttg tatttctgtt
      121 accatgctac aaggttgtag cggctatttc atcaaaaggg caacaatctg tgcttttgtt
      181 cctcctcatc gggagcgcac atcggattat tacaataata taatttacca tcatcgctaa
      241 tacgcctgct tccaaaagac ttgagaagtt ttaagtccaa tgtagccctg catgttggac
      301 aagaaggcag cactggactg aaattgtcct ttctctttat tggcatatac acacaatatt
      361 cttccataat ttggtataca tggaaaatag atatatagat tggtaaaatc caggtcatat
      421 gtatcataac agtcaggcgc agttagtacg ggttgctagt tgtagcgtgt gtatattatg
      481 ggaaagcgcg ttagagacaa tatattttca atcatcaggc acttttatac ttcaattaac
      541 aaagtgggta caatagtgaa aggaaaataa agacattatt gtagttagaa tcaataattt
      601 tttctttttc ctttcctttt tcaaaagaac tcttttagtt tttcttttgt tgtcgtcgtt
      661 gttgtttagc caattagcct aacaaagcaa atcctataat aaatccaagg acagctccaa
      721 atgtcggcag ccattttctt tctttgtgag cttttggtat catgtcgtaa aacagcatat
      781 agaaaatgcc gcccgctgag atggcaaggg tcagcgcaat aacaacttgc atgccttgaa
      841 caaagaataa acctattaat ccaagaacaa ttggaagcac tgatacaaac ccgatagcaa
      901 tcaagccttt tattttgtta cctccaaaag ccgttgtctt gccagaaatc atttcacgat
      961 aagaagcaat tccttctggg acattttgta ttccaataag caatgcaagc acaagcccag
     1021 tcccgccggc tatcgaagct cctatggcaa gcgattctgg aatagaatca agacctatgc
     1081 cgagtagaat gccagcccct ccacccttgc gc
//
LOCUS       DATLQL010000728         1337 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_351704, whole genome shotgun sequence.
ACCESSION   DATLQL010000728 DATLQL010000000
VERSION     DATLQL010000728.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1337)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1337)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1337
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_351704"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1021..1311)
                     /locus_tag="VNB68_07280"
     CDS             complement(1021..1311)
                     /locus_tag="VNB68_07280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37186.1"
                     /translation="MKSGLYCRHSDSYIVPTISKIEEQLQQQAKNGYWQNELLSLGIS
                     EPKESKELNENKEELENLADNIKQAMFQDYKLAYGDKGDVHKEEAKSTVTVG"
BASE COUNT          393 a          248 c          251 g          445 t
ORIGIN      
        1 gattaatgcc tttgtgacaa gcacggaacg ctatttatga aatgcgctat tatacattgt
       61 ctcatttaag tcaaaagtaa gtgatcccct gtaattagcg ggttcggtgg aacccagaac
      121 gatatcggtt ctttaaagag attctattat tcagagtaga gaacctctta actttaaagt
      181 tttcctactt gtatgaatag gctatacatg taaaagagta atcaaaagac tttggtcata
      241 tctttaagta tgtaatgaca taaaactatc tgagagattt gcaggctgga cagcatataa
      301 gagagcatgc tgagagatgt aaagtctagg aatgtcaaac aacatgtcat caaaaacttc
      361 tttctccatc tgatttatcc aaagctttgc gaaatggctt tccatttctc cttctccttc
      421 ccattgcaag cgcaagccca aatgatggca tggtcctact caggtactct gcagacaccg
      481 ctactatagc cgcaatgtgt tatcaaactt taagtcatac caacacgtat gataagacat
      541 atacacaatg gatatgtctt ctgtctgcgg tggatgtggt aataaaacgc aagactatcc
      601 aatttactgt tacatgtgtg atgattactt ttgttcagaa aattgtcatc ttaaaaagca
      661 ttctagacca tggcagaagt tttagcagtc gcgcctcatc ctacttgaag aataccttgc
      721 ctatattctt gaagagtata ggtttgaatt cgctatcctt gaagattcca gtcgtacaga
      781 ttaattctga ttgacctgtc tcttaattgc gattagggat ttgaaaaaat tccgttccgc
      841 tgtatatacc tgtcattatt atttgaacac tttggcatat agcgaatttt tgtatgctac
      901 tgtttctttt gatgatgtag tataaaaaac gaacataatt agcggttctg tgggatgcag
      961 ctgaaaatgg agatgagtcc cgagatggca aaaagagaaa aatatacgtt ttaataacaa
     1021 ttatccaaca gtcacagtcg atttcgcttc ttctttatgc acgtcgcctt tatcaccata
     1081 tgctagttta taatcctgaa acatagcctg tttgatattg tctgctaggt tttcaagttc
     1141 ttctttattt tcgttaagtt ctttgctttc ttttggctcg gatattccaa gcgaaagaag
     1201 ttcattctgc caatagccat tcttggcttg ctgctgtagt tgttcttcta tcttggaaat
     1261 tgttggcacg atataggagt cactatgtct gcaatataag ccagatttca tttaacaagt
     1321 actgaacgga atactgg
//
LOCUS       DATLQL010000729         1645 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1596854, whole genome shotgun sequence.
ACCESSION   DATLQL010000729 DATLQL010000000
VERSION     DATLQL010000729.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1645)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1645)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1645
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1596854"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(420..584)
                     /locus_tag="VNB68_07285"
     CDS             complement(420..584)
                     /locus_tag="VNB68_07285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37187.1"
                     /translation="MATWLGLAEMSTQIEKDLYFTPELETAAIENPLYRGSIYYENLT
                     DFLPIPSKIL"
     gene            884..>1645
                     /locus_tag="VNB68_07290"
     CDS             884..>1645
                     /locus_tag="VNB68_07290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37188.1"
                     /translation="MTLTSGATNEKTEVFHGEENAMKILLQTMSNVQKEALVCADVNS
                     AAFSMGVAPIKKEYNDFKRRGVRIRFITEITSQNLEYVKDLINYAEVRHMDTVKGNMA
                     VSETEYIATATLEGAKPITQTIYSNAKPILDQQRYFFENLWIKAVRADQRIREIEEGI
                     EPHITKIIESPEDIISRARHVIETSNHLSVCSDLGGLKMIETIVSDSIKKILEKSQKG
                     QHKGVRWIGTINKDDLDLVQRFLASGMEIKHIIYTP"
BASE COUNT          529 a          288 c          353 g          475 t
ORIGIN      
        1 tgtcatggaa aaactgatcg acaatactgc cctgtaagtt gaatgatgat atgatatctg
       61 ttgcctttga agctgcacac gctagaaaaa gactaagagg taaaggatta ctcccggtaa
      121 tatcctacgt aggcatcatc gagcgatctg atcgaagcta gagtaattaa gatcaggatt
      181 ggatgagtaa gagagctaga gaggggcaca caacatatgc atactatggc aacaagagag
      241 agatatgcat gatatatgtg tgcccagtct cttcccctct cctctgagtt tcttaccttc
      301 agggattatt tccctcaatt tagcataaac tttgatagga cttgtacttg acttatcaga
      361 gcagcaacat atgtataatc tcttcttatg agacatccag tacaataatt tcaagaatat
      421 tacaatattt tactgggtat cggcaaaaag tcagtcaagt tctcatagta aattgaaccc
      481 cgataaagcg gattctcaat agctgcggtc tcaagctcag gtgtgaagta gaggtctttc
      541 tcgatttgag ttgacatctc tgctaatcct aaccatgttg ccattgttcg ttaaatcaaa
      601 agtccgaatt atcttgtatt ctttaagaag tttttctaat tgatggtttg tgccttctat
      661 ggtaaatgaa tgtgaatcca ttttcgtact ccaatttcaa gtggttcttg ttgttcctcg
      721 cttattgttt tggggaattg tgtgtgcacg tgtgagaata ttataaactg tgagaggatg
      781 aggattctcc taggatagat tctgtaacat gatggtttag gcatgttata taacattcct
      841 tacattggtt ttaaagctgc attgcgcaag ctgcttttgt tcattgacgc ttacttcggg
      901 tgctaccaat gagaaaacgg aagtatttca tggcgaagaa aatgcaatga aaatactctt
      961 acagacaatg tccaatgtac aaaaagaggc gctggtttgc gctgacgtaa actctgcagc
     1021 tttttcgatg ggtgttgcgc ccataaaaaa ggaatacaat gactttaaga gaagaggggt
     1081 aagaatcaga ttcatcaccg aaataacttc acagaatctg gaatatgtga aggatttgat
     1141 caattatgca gaggttagac acatggatac cgtcaaagga aatatggcag ttagcgaaac
     1201 agaatacatc gccacagcaa cgcttgaagg tgcaaaacca attacgcaga cgatttatag
     1261 caatgccaag ccaattttgg accaacagcg ttattttttt gaaaaccttt ggataaaggc
     1321 cgtccgtgca gaccaaagaa taagagagat agaagagggc atagaaccac atattacaaa
     1381 aataattgaa tctccagagg atatcatttc aagggcaagg catgttatag aaacttctaa
     1441 ccacttatct gtatgctctg accttggggg cttgaaaatg attgagacta ttgtctcaga
     1501 ttcaataaag aaaattttag aaaaatcgca aaagggccag cataaaggtg tgagatggat
     1561 tggcacaata aacaaagacg atctggatct agtccagaga tttttggcgt caggtatgga
     1621 gattaagcat ataatttaca ctcca
//
LOCUS       DATLQL010000730         1121 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2660466, whole genome shotgun sequence.
ACCESSION   DATLQL010000730 DATLQL010000000
VERSION     DATLQL010000730.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1121)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1121)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1121
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2660466"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..587
                     /locus_tag="VNB68_07295"
     CDS             <1..587
                     /locus_tag="VNB68_07295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HVD37189.1"
                     /translation="NVSRNSPTHTSIIIFPFSKYFKGEGIKACVSSWRRIHDTATPPM
                     AKAAGNYLNSVLATQECRSHGYDESIMLDKEGNVSEASGENIFVVRNNTIYTPYIAGS
                     ALEGITRDTALTIAGNLGYKTIERPISRTELYLADELFLTGTAAEIIAITSIDGRQIS
                     SGKEGPITKTIREMYTRIVCAEERQYMDWITPVW"
     gene            581..>1121
                     /locus_tag="VNB68_07300"
     CDS             581..>1121
                     /locus_tag="VNB68_07300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HVD37190.1"
                     /translation="MVTTATNLNVAVIGVGGWGKNHARVLRDLGALAAICDVNIQRSR
                     ELAKMYDAKPYDSVDRMLQEERKLDACIVCTPTTSHFTIAKKIMEKGINVFVEKPLSF
                     STKECEEMIELTKMNKVILTSGYIERFNPAVQDVKQIIENKQYGDLLMMEFHRENRMP
                     THVVDVGIIYDTSVHDIDTA"
BASE COUNT          378 a          201 c          250 g          292 t
ORIGIN      
        1 taaatgttag tagaaattct ccaacccaca catcaattat tatttttccg ttttcgaaat
       61 acttcaaggg ggagggcatc aaagcttgtg tttcatcgtg gagaagaatt cacgatactg
      121 ctacaccccc tatggctaaa gcagctggaa actaccttaa ttcggtgctt gctacacagg
      181 aatgccgaag tcatggatat gatgaatcaa taatgctcga caaagagggc aatgtcagcg
      241 aggcctcagg tgaaaatatt tttgtcgtta gaaataatac tatttacacc ccttacatcg
      301 ctggatcagc attagaaggt attactagag acacggcact aactatagcg ggaaatctag
      361 gttacaaaac aatcgaacgc cccatatcga ggacagaact atatttggct gatgagcttt
      421 ttttaactgg cacagcagca gaaattattg cgatcactag tattgatggt cgtcagataa
      481 gcagcggaaa agaaggaccc ataacaaaaa ctattcgcga gatgtacaca aggatagtct
      541 gcgcagaaga acgacaatat atggattgga ttactccagt atggtgacaa ccgcaacaaa
      601 tctcaacgta gccgtgatag gtgtaggagg gtggggaaaa aatcatgctc gagttttgag
      661 ggacttgggc gcacttgcag ctatttgtga tgtaaatatt cagcgtagca gagaattggc
      721 caagatgtat gatgcaaagc cttatgattc ggtggatcga atgcttcaag aggaaagaaa
      781 attagatgcc tgcattgtct gtactcctac cacgtcacat tttactatcg caaaaaaaat
      841 aatggagaag ggaattaatg tttttgttga aaaaccccta tccttttcta caaaagagtg
      901 cgaggagatg atagaattaa caaagatgaa taaagttatt ttgacatcag gctacattga
      961 aaggttcaac cccgctgttc aagatgtcaa acagattata gaaaacaagc agtatggtga
     1021 tctattaatg atggaatttc atagggagaa taggatgccc acacacgtag tagatgttgg
     1081 cataatatac gatacatcgg tacatgatat tgatactgca a
//
LOCUS       DATLQL010000731         2660 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_2660670, whole genome shotgun sequence.
ACCESSION   DATLQL010000731 DATLQL010000000
VERSION     DATLQL010000731.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2660)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2660)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2660
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2660670"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            299..>2660
                     /locus_tag="VNB68_07305"
     CDS             299..>2660
                     /locus_tag="VNB68_07305"
                     /inference="COORDINATES: protein motif:HMM:NF017262.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA];
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein CopC"
                     /protein_id="HVD37191.1"
                     /translation="MREIIKYTMRVYTRCYLSVRVNYFTKQRYRDLLLTVFVLAIASF
                     LICGTMEKSYGHAFLTNSNPVASQSLSSPPGKIEAFFSEPVDIKYSQVKVLDPNGKEV
                     DNKDIHHIDGDQSSLSVTLPRLEDGVYTVSTNVLSQTDGHVTKSAYVFAVGQAAIPSN
                     LSSTNSESSIIYVPEAIARFPTLVGQVIIVGGAFSVLWLWRPFSKIQWLSDILLETRK
                     NIDKRLVSLFLLGSIILVVSDFAIVVFQAFAISATLLDVLTTRFGMVLVARIFLSLTL
                     LGVSLFEFRRFRKSRTVLSKGEMTGIISLGITLLLTTSLIGHGAANNQFSSIAIDFVH
                     NLTASIWIGGVIYLAFILIPKLKVEHSLNEYTKIAFLTILIPRFSTSVIVVLGFIVIT
                     GPFLLYILENRIDLLISSLYGKTIIVKLTLATIMLALGAYNQLIIYRDSMKCTSVPIT
                     VAEGHKGSKTSPDFDPPPGKRQNKPTGKSRDIVSRFSRSTKIESAVGIILLASVAFLV
                     NTGLPQSEFQNQFRQQESSSSETSSLTGVESFKATGFIDNDTRVVLSITPFAVGSNNF
                     SISFVDSKNNPIDMKLAEMKYTEIEKSIGPIDVELQQVSKGVFFVKAAFGIPGVWYIQ
                     IEGVPNKSNVPRVVATFENIVVKPKLDQLQFNANRFEIPGNRSQPLYPIYDSNRNAIW
                     VGDTTIDSGRILEFRLDSNKYIEHKIDGTSIITVAAQDSNGRIWYIDPLTRHLGSYDP
                     STSSNKLYGLPNRVIPSAVAIDIANKVWITSPATNEILRFDPSKGNF"
BASE COUNT          819 a          522 c          522 g          797 t
ORIGIN      
        1 atgcattcaa cactggagat ataccttttc ccgacccctt ttggacctct atcaatacgt
       61 tatttaaatc gcctagaaga gctggctcat ttaccaagcc gacgagaata gtaacgtttc
      121 caaacttttt ggttaaatga ccataggtgg gtatgtaact gtaataaagc aaaaatgcga
      181 ttgcgaatga cgacaacaaa aacataacca atatgaaacg aatagacttc aattttaagt
      241 atcagctatc atattcgacg cttaaatctt tccccaatat tcgacgactg tatcagttat
      301 gagggaaata ataaaataca ctatgcgtgt gtataccaga tgctacttgt ctgttagagt
      361 taactatttt acaaagcagc gatataggga tctgcttcta acagtatttg tattggcaat
      421 tgcttcattt cttatctgtg gtacgatgga gaaatcatat ggccatgcgt ttcttacaaa
      481 tagtaatcca gtggcttctc aatcattatc ttctccccct ggaaagatag aagccttctt
      541 tagtgaacca gtcgatatca aatatagcca agtaaaagtt cttgatccca atgggaaaga
      601 agtggataac aaagatatcc atcacattga tggagaccag tcctcactaa gtgttacact
      661 accacggcta gaggacggag tgtacaccgt gtctacaaat gtactgtcac aaactgatgg
      721 ccatgttaca aaaagtgctt atgtatttgc tgttggccag gccgcgattc cttcgaactt
      781 gtcaagcact aattcggaat catctatcat atatgtacct gaagcaattg caagatttcc
      841 tacccttgta ggacaggtca taatagtggg tggcgcattc agcgtgcttt ggctatggag
      901 acccttttca aagatacaat ggctttcaga tatccttctg gaaactagaa agaatattga
      961 caaaaggttg gtttccttgt tcctactagg atctataatt ttagtcgtat cagatttcgc
     1021 tatagtcgtt tttcaagcat tcgcaatctc tgctactttg ttagatgttc ttactactag
     1081 atttggtatg gtgttggttg caaggatctt tttatcactt acactcttgg gagtatcatt
     1141 atttgaattt cgtaggttca gaaaatccag gacggtttta tccaaaggag aaatgacagg
     1201 aataatttca ctgggtatta ccttacttct tacaactagt ctgatcggtc atggcgctgc
     1261 taataaccag ttttcatcta tagctattga ttttgtgcac aacctgacgg catcaatatg
     1321 gattgggggc gttatctact tggcgtttat tctcattcct aaactcaaag ttgaacattc
     1381 tctcaacgaa tacacaaaaa ttgcatttct cacaatactt atcccaagat tttcaacctc
     1441 tgtgatagtt gtgcttggct ttatcgtaat aaccggtcct ttcctactat acattcttga
     1501 aaaccgtatt gacctgctaa tatcttcgct ctatggtaag accataatcg taaagcttac
     1561 tttagctaca ataatgttgg cgctgggggc atataatcaa ttaataattt acagggactc
     1621 tatgaagtgt acatccgtgc ctataactgt ggcagaaggt cataaaggat caaagactag
     1681 tccggatttc gatcctcctc caggtaagag acaaaacaaa cctactggaa aaagtcgtga
     1741 catagtttct agattttcca ggagcacaaa aatagaaagc gctgtcggga ttattctttt
     1801 agcgtcggtt gcatttcttg taaatacagg attgcctcaa agtgaatttc agaatcaatt
     1861 tcgacaacaa gagtcctcca gcagtgagac atcctcgctg accggggtcg agagctttaa
     1921 agcaactggc tttattgata atgatacacg agtggtcctc tctataactc catttgccgt
     1981 agggagtaac aatttctcca tttcatttgt tgattcaaaa aacaatccca tagatatgaa
     2041 actagcagaa atgaagtata cagagattga gaagtctatt gggcctattg atgttgagct
     2101 tcaacaagta tcaaaaggcg tcttttttgt gaaagcagca tttgggattc ctggtgtatg
     2161 gtacatacaa atagaaggtg tcccgaataa gtctaatgtc cctcgagtag tcgctacgtt
     2221 tgaaaatatt gtcgtaaaac caaagctcga tcagttgcag ttcaatgcga acaggttcga
     2281 gatacccggt aataggagtc aaccactgta tccgatttac gatagtaata ggaatgccat
     2341 ctgggtcgga gacactacaa ttgatagtgg acgaatactc gaattcagat tagactccaa
     2401 caaatatatc gaacataaga tagatggaac tagtattatt acagtggctg cgcaggacag
     2461 taacggaagg atctggtata ttgacccatt aacaagacat ctaggcagtt atgacccttc
     2521 aaccagtagt aacaaattgt acggattacc aaacagagtt attccttcgg cggttgcaat
     2581 tgacatcgct aacaaagtat ggatcacatc ccctgcaaca aacgaaattt tgagatttga
     2641 tccaagtaaa ggaaacttta
//
LOCUS       DATLQL010000732         1267 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1227132, whole genome shotgun sequence.
ACCESSION   DATLQL010000732 DATLQL010000000
VERSION     DATLQL010000732.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1267)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1267)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1267
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1227132"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(166..642)
                     /locus_tag="VNB68_07310"
     CDS             complement(166..642)
                     /locus_tag="VNB68_07310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HVD37192.1"
                     /translation="MAELGLAEYFSMAEALGIIATLFVILYFSRKQMQSLSVDVQTKV
                     LNDLDEKVRKMAEIIIEKPSMQKVIYKLEKPSEEIAFAYYILFICSHAYAMRQRKVLN
                     DHEWTGWLQWMKNCFKYGTIGEQWKQIQAERWLNPDFENFLNEEIIPKPGSRRTDF"
BASE COUNT          369 a          271 c          213 g          414 t
ORIGIN      
        1 acagagagga tggccagagg aatttagata aagaggcaac cagtcacgac gtctttttcg
       61 atgcattcag attatctttg atgtcctggc attgattata ccagtgaaga cagcgatagt
      121 gtatagcgta tgtattgagc tggctgtagc tttagtatat taggcctaga agtctgtacg
      181 tctagaccct ggttttggta ttatttcttc atttaggaaa ttctcaaaat caggattcaa
      241 ccatctctct gcctgtattt gtttccattg ttcacctata gttccatact tgaagcaatt
      301 tttcatccac tgtaaccatc ctgtccattc atggtcatta agcacttttc tttgacgcat
      361 agcatatgca tgagaacaaa taaacaagat ataatatgca aatgctatct cttctgatgg
      421 cttttcaagt ttatatatga ccttttgcat cgatggtttt tcaattatga tttctgccat
      481 cttgcgaacc ttctcatcca agtcattgag aacctttgtt tggacatcta ctgaaagact
      541 ctgcatttgc tttcttgaga aatacagaat cacaaacaat gtagcaatta tcccaagtgc
      601 ctctgccatg ctaaaatatt cggctaaacc aagttcagcc atacattttc ctcatcgtga
      661 ggtgtgtcac attaaggaat aatagtcttc ttctacctaa ttttgtaaat gttgtatttt
      721 aattgttatc tgttcgactt gtcaaatgcg tcccattaaa ctgctcatat cagtggagca
      781 gagaattgac ataagcagta cttgataaag cctcatagca tgtgcagcat aagagcaagc
      841 tgagaaatgt gagattagga atgtcaaaca tctcatcaaa cttctctata tctgattcac
      901 cttaagcttc gctaggtttt ttgtccgaca attgttaaaa atcaagctca tttaataccg
      961 tagttccctc acagaaagaa atggaccggg tgggatttga acccacgacc tcagcaactc
     1021 tcaaggatat aattatccag actgaagtgt cgaaactggt ctattgcata aggacagagg
     1081 ttctcacgtt aactactttg aatacttcat aaccatgata gaagacaccg tcagtgctaa
     1141 gattcccctt cttgtttcct catcttcata gtattcaatt ttatactaac tacttccatt
     1201 cccaaacctt ttctgtcacg tttccaaact catcgacctc agtttcaaaa actccaacca
     1261 tcccatg
//
LOCUS       DATLQL010000733         1326 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U13877
            k141_1230019, whole genome shotgun sequence.
ACCESSION   DATLQL010000733 DATLQL010000000
VERSION     DATLQL010000733.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37939755
            Sequence Read Archive: SRR8553639
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1326)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1326)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/05/2024 09:49:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,464
            CDSs (total)                      :: 1,445
            Genes (coding)                    :: 1,434
            CDSs (with protein)               :: 1,434
            Genes (RNA)                       :: 19
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 8 of 11
            Pseudo Genes (multiple problems)  :: 2 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1326
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1230019"
                     /isolate="SMAG_U13877"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="38.9206 N 106.9489 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            150..1025
                     /locus_tag="VNB68_07315"
     CDS             150..1025
                     /locus_tag="VNB68_07315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA ester lyase"
                     /protein_id="HVD37193.1"
                     /translation="MFRSLLFVPGNSQKFIEKSKTLDADIICLDLEDSVPPNQKPLAR
                     EMIRGVLSERKSYHSSSALYVRINSVDSGFAVEDLSASVQQGIEGIIVPKVNTEDTII
                     DTARLVSKLEEERAIVKGHIKLIASIETAQGVLNAYDIAKADGRINALLFGVFDFLYD
                     MHLDYVENNGTGYAYARAKLPVDARAAGALAIDAIWQNVDDTEGLKRDTQYARRLGYS
                     GKSIIHPSQIDPVHKIFVPTKTEIEWAKKVVQSLAPAVENGTATGAGAISLEGRMIDI
                     VHYKLAKSILDLLKS"
     gene            1130..>1326
                     /locus_tag="VNB68_07320"
     CDS             1130..>1326
                     /locus_tag="VNB68_07320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HVD37194.1"
                     /translation="MFTGIVEGLARVRSISKIKAKNKAADTKMSIYLGRLQKGLKIGD
                     SISVNGACLTITKLHKGCADF"
BASE COUNT          441 a          231 c          298 g          356 t
ORIGIN      
        1 aaggggaaga taaaaccggt tatttacgaa attttaccat ttaatgatat ggtaaagggt
       61 catgtcatga tggcaaaagc tgaacagatt ggaaaaatga tcactactcc tcataaattg
      121 taaggaccgc tttggagaac ttcggaggga tgtttagaag tctacttttt gtcccaggca
      181 atagccagaa gttcatagaa aaatccaaaa cgcttgatgc ggatatcatt tgcctagacc
      241 ttgaggactc ggttcctcct aatcagaaac ccctggcccg cgagatgata agaggagtat
      301 tatcagagag aaagagctac cattcttcat ctgcattata tgtacggatc aattcagttg
      361 actcaggttt tgcagtagaa gatctctcag cttcagttca gcaaggaatc gaaggtatta
      421 tcgttccgaa ggtgaatact gaagatacca taatagatac tgcgcgcctt gtttctaagc
      481 tggaagaaga aagagcgatt gtaaagggcc atattaaatt aattgcttct atcgaaactg
      541 cgcaaggggt gttaaatgcc tacgacattg cgaaggcaga cggaagaatt aacgcattgc
      601 tttttggtgt ttttgacttc ctttatgata tgcatttaga ctatgtagag aataatggaa
      661 ctggatacgc atatgctcgt gcaaagctcc ccgttgacgc aagagcagca ggagcattag
      721 ccatagatgc catatggcaa aatgtagatg atacagaagg tctaaaaaga gatacacagt
      781 atgcaagacg attaggatat tccggaaaaa gtattattca cccttcgcag attgacccag
      841 tccataaaat ttttgttcct actaaaactg aaattgaatg ggccaagaaa gtagtacaat
      901 ccttagcgcc ggccgttgaa aatgggacgg ctactggagc tggtgcaatt agcctagaag
      961 gcagaatgat cgatatagta cattacaagc tagcgaaatc aatattggat cttttaaaat
     1021 cctaatgagc agaatgcaag ccagaagtaa aatataaaaa aaagttattt accttacatc
     1081 tgcagtttta ggtatgcttt ttattctgtt gtaatgaaat aaccattcga tgttcacagg
     1141 tatcgtcgaa ggtctggcta gagtaaggtc aatttcaaag atcaaagcaa agaataaagc
     1201 agcagatact aagatgagca tctaccttgg gagattacag aagggtttga aaatcggcga
     1261 tagcatcagt gttaatggag cttgtcttac cattacaaag ctgcataaag gctgcgcaga
     1321 ttttga
//
